RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9538
(117 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 90.8 bits (226), Expect = 1e-22
Identities = 28/79 (35%), Positives = 51/79 (64%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAML 68
++ +YA+HRDP V+ NP++F+P+RFL E + + PF AG R C+ + A +
Sbjct: 359 GTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARM 418
Query: 69 QMKIVISTVLRHFKILPSP 87
+MK+ ++T+L++F++ P
Sbjct: 419 EMKLFLATLLQNFEVELPP 437
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 80.6 bits (199), Expect = 4e-19
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
++ I A +RDP V+ +PD+F+P+RF + PF G +C+ A L+
Sbjct: 318 TVVLLSIGAANRDPEVFPDPDEFDPERFN---------NAHLPFGGGPHRCLGAALARLE 368
Query: 70 MKIVISTVLRHFKIL 84
+K+ ++ +LR F +L
Sbjct: 369 LKVALAELLRRFPLL 383
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 63.7 bits (155), Expect = 4e-13
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPK-----YNYQPFAAGNRKCIAYKYA 66
IM +Y +HR P V+E ++F P+RF + G P + Y PF+ G RKC+ ++A
Sbjct: 378 IMISVYNIHRSPEVWERAEEFVPERFDLD--GPVPNETNTDFRYIPFSGGPRKCVGDQFA 435
Query: 67 MLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFY--NGIYVNLESR 116
+L+ + ++ +L+ + P D M T + NG+Y+ + R
Sbjct: 436 LLEAIVALAVLLQRLDLELVP------DQDIVMTTGATIHTTNGLYMTVSRR 481
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 59.8 bits (145), Expect = 8e-12
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 16 IYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
+ A+H ++ ++ ++FNPDRF F P ++ PFAAG R CI +AM++ KI++
Sbjct: 419 VLAIHHSEELWGKDANEFNPDRFAGRPFA--PGRHFIPFAAGPRNCIGQAFAMMEAKIIL 476
Query: 75 STVLRHFKILPSPRYK 90
+ ++ F S Y+
Sbjct: 477 AMLISKFSFTISDNYR 492
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 59.0 bits (143), Expect = 2e-11
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
I IY + D +ENP++++P+RFL EK+ Y F AG R C AML
Sbjct: 362 IAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIAC 421
Query: 72 IVISTVLRHF 81
+ I+ +++ F
Sbjct: 422 MAIARLVQEF 431
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 55.6 bits (134), Expect = 3e-10
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 16 IYAMHRDPNVYENPDQFNPDRFLPEKFGKY-PKYN---YQPFAAGNRKCIAYKYAMLQMK 71
I+A+ RDP+V+ENP++F P+RFL EK K P+ N PF AG R C + ++ ++
Sbjct: 394 IWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVE 453
Query: 72 IVISTVLRHF 81
++ T++ F
Sbjct: 454 YILGTLVHSF 463
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 52.0 bits (125), Expect = 5e-09
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
++NY Y++ R+ +ENP+QF+P RFL + PF+ G R C+ ++A ++
Sbjct: 386 LINY-YSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQFAQDELY 440
Query: 72 IVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+ S ++ +FK+ K + +Y + + + V LE R
Sbjct: 441 LAFSNIILNFKLKSIDGKKIDETEEYGLTLKPNKFK---VLLEKR 482
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 50.9 bits (122), Expect = 1e-08
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 22 DPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPFAAGNRKCIAYKYAMLQMKIVISTVL 78
+P +++NP++F P+RFL E+ N + PF G R C A+ + IV+ ++
Sbjct: 404 NPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLV 463
Query: 79 RHFKILPSPRYKTID 93
++F++LP P ID
Sbjct: 464 QNFELLPPPGQSKID 478
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 49.7 bits (119), Expect = 3e-08
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 17 YAMHRDPNVYENPD--QFNPDR------FLPEKFGKYPKYNYQPFAAGNRKCIAYKYAML 68
YAM R ++ PD +F P+R F+PE KYP F AG R C+ + A++
Sbjct: 400 YAMGRMERIW-GPDCLEFKPERWLKNGVFVPENPFKYPV-----FQAGLRVCLGKEMALM 453
Query: 69 QMKIVISTVLRHFKI 83
+MK V V+R F I
Sbjct: 454 EMKSVAVAVVRRFDI 468
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 49.3 bits (118), Expect = 5e-08
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
+H DP VY NP +F+P R+ + + + PF G+R C A L+ IS
Sbjct: 397 QVHMDPEVYPNPKEFDPSRW--DNYTPKA-GTFLPFGLGSRLCPGNDLAKLE----ISIF 449
Query: 78 LRHF 81
L HF
Sbjct: 450 LHHF 453
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 47.5 bits (113), Expect = 2e-07
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ--PFAAGNRKCIAYKYAMLQ 69
+M +A+ RD N +E+PD F P RFL + +++ PF +G R C + +
Sbjct: 404 VMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYA 463
Query: 70 MKIVISTVLRHF 81
+ + ++ +L F
Sbjct: 464 LDLAVAHLLHCF 475
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 47.5 bits (113), Expect = 2e-07
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLP--EKFG---KYPKYNYQPFAAGNRKCIAYK 64
AT++ ++A+ RDP + +P +F PDRFLP E G K + PF AG R C
Sbjct: 396 ATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLS 455
Query: 65 YAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
+ L+M +++ L H +T D L E LT
Sbjct: 456 WG-LRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLT 494
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 47.7 bits (113), Expect = 2e-07
Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 9/105 (8%)
Query: 9 DATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFG--KYPKYNYQPFAAGNRKCIAYKY 65
++ I+ IYA+ R +V+ E+ F P+R++ + G P Y + F +G R C+
Sbjct: 393 ESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHL 452
Query: 66 AMLQMKIVISTVLRH--FKILPSPRYKTIDD----LKYEMRVTLT 104
A+LQMKIV ++++ FK++ + + I +K+ ++VT+T
Sbjct: 453 ALLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVT 497
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 46.0 bits (109), Expect = 6e-07
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 3 PKEKILDATIMNY-----------IYAMHRDPNVYENPDQFNPDRFLPEKFGKY-----P 46
P E + TI Y + + R+ ++++ ++F P+R P + + P
Sbjct: 377 PHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGP 436
Query: 47 KYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSP--RYKTID 93
+ PF+AG RKC + + + ++ + F P R + ID
Sbjct: 437 DFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDID 485
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 45.9 bits (109), Expect = 7e-07
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 17 YAMHRDPNVY-ENPDQFNPDRFLPEK-FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
Y+M R + + F P+R++ + F + + F AG R C+ A LQMK+ +
Sbjct: 418 YSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMAL 477
Query: 75 STVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+ + R FK P + +KY M L+ NG+ V + R
Sbjct: 478 ALLCRFFKFQLVPGH----PVKYRMMTILSMANGLKVTVSRR 515
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 44.9 bits (106), Expect = 1e-06
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 16 IYAMHRDPNVYENPDQFNPDRFL---PEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI 72
++ +HR P +++ ++FNP+R+ P ++Y PF G RKC+ +A + +
Sbjct: 494 VWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVV 553
Query: 73 VISTVLRHFKILPSP 87
+ ++R F +P
Sbjct: 554 ATAMLVRRFDFQLAP 568
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 43.7 bits (103), Expect = 4e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPE-------KFGKYPKYNYQPFAAGNRKCIAYK 64
++ I A+H D ++Y+ P FNP R+ N+ PF G R C +
Sbjct: 384 VLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSE 443
Query: 65 YAMLQMKIVISTVLRHFK 82
A L+M + I ++ +F
Sbjct: 444 LAKLEMAVFIHHLVLNFN 461
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 43.0 bits (101), Expect = 7e-06
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 7 ILDATIMNYIYA-MHRDPNVYENPDQFNPDRFLPEKFGK------YPKYNYQPFAAGNRK 59
I +N++ A M RD +E P +F P+RFL G+ + PF G R
Sbjct: 402 IPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRI 461
Query: 60 CIAYKYAMLQMKIVISTVLRHFK 82
C AML ++ ++ ++R F+
Sbjct: 462 CAGLGIAMLHLEYFVANMVREFE 484
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 39.1 bits (92), Expect = 2e-04
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 17 YAMHRDPNVYENPDQFNPDRFL 38
RDP V++ P++F PDRF+
Sbjct: 384 LVT-RDPKVFDRPEEFVPDRFM 404
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 39.2 bits (91), Expect = 2e-04
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
A+H D +++ FNP R+ P + PF G R C Y+ A + + + + +
Sbjct: 376 AVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRL 435
Query: 78 LRHFKILPSPRYKTI 92
+ F +P+ + K +
Sbjct: 436 VTRFSWVPAEQDKLV 450
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 38.6 bits (90), Expect = 3e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
++ Y ++H D Y+NP QFNP R+ EK ++ PF G R C A L+
Sbjct: 355 VLAYFRSVHLDEENYDNPYQFNPWRW-QEKDMN--NSSFTPFGGGQRLCPGLDLARLE-- 409
Query: 72 IVISTVLRHF 81
S L H
Sbjct: 410 --ASIFLHHL 417
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 37.4 bits (86), Expect = 6e-04
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 17 YAMHRDPNVY-ENPDQFNPDRFLPEKFG-KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
+A+ RD + NPD+F P+RFL ++ K Y + PF +G R C + +++
Sbjct: 397 WAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPY 456
Query: 75 STVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNL 113
+ +L +F P DD+ ++ L + ++ L
Sbjct: 457 ANLLLNFN-FKLPNGMKPDDINMDVMTGLAMHKSQHLKL 494
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 37.0 bits (85), Expect = 0.001
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 4 KEKILDATIMNY-----------IYAMHRDPNVY-ENPDQFNPDRFLPEKFG---KYPKY 48
+E I DA I Y +A+ RD + +NP++F P+RF+ E G K +
Sbjct: 370 RETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDF 429
Query: 49 NYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFY 106
PF +G R C A + ++I + +L F P+ +D+K ++ L +
Sbjct: 430 ELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFD-WSLPKGIKPEDIKMDVMTGLAMH 486
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 35.3 bits (81), Expect = 0.004
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 19 MHRDPNVYENPDQFNPDRFLPEKFGKYPKYN-YQPFAAGNRKCIAYKYAMLQMKIVI 74
+H +++ +P +F+P RF PK N + PF G C + A L++ ++I
Sbjct: 374 IHHSADIFSDPGKFDPSRFEVA-----PKPNTFMPFGNGTHSCPGNELAKLEISVLI 425
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 30.5 bits (69), Expect = 0.14
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 15 YIYA--MHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI 72
Y+Y ++ DP +Y +P FNP R+L + + + F G R C + +++
Sbjct: 368 YVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFL--FGGGTRLCPGKELGIVE--- 422
Query: 73 VISTVLRHF 81
IST L +F
Sbjct: 423 -ISTFLHYF 430
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 29.6 bits (66), Expect = 0.38
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 17 YAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPFAAGNRKCIAYKYAMLQMKIV 73
Y + R+P V+ +P F P+R L E N + F+ G R C A ++
Sbjct: 433 YGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMM 492
Query: 74 ISTVLRHFK 82
++ +L+ FK
Sbjct: 493 LARLLQGFK 501
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 28.8 bits (64), Expect = 0.71
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 21 RDPNVYENPDQFNPDRFL------PEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
R+P ++++P + P+R L E + + F+ G R C+ K + M +++
Sbjct: 424 RNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMML 483
Query: 75 STVLRHF 81
+ L+ F
Sbjct: 484 ARFLQGF 490
>gnl|CDD|111311 pfam02404, SCF, Stem cell factor. Stem cell factor (SCF) is a
homodimer involved in hematopoiesis. SCF binds to and
activates the SCF receptor (SCFR), a receptor tyrosine
kinase. The crystal structure of human SCF has been
resolved and a potential receptor-binding site
identified.
Length = 273
Score = 28.0 bits (62), Expect = 1.2
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI---VI 74
A ++ ++ E+ RF PE F F NR A+K + + V+
Sbjct: 116 AEDKNKDIKESGKLPEERRFTPENF----------FRIFNRSIDAFKDFAVALDTSDCVM 165
Query: 75 STVL 78
S+ L
Sbjct: 166 SSTL 169
>gnl|CDD|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family.
This family represents a division of a larger family,
the other branch of which is predicted to act as
glutamate--cysteine ligase (the first of two enzymes in
glutathione biosynthesis) in the cyanobacteria. Species
containing this protein, however, are generally not
believe to make glutathione, and the function is
unknown.
Length = 287
Score = 27.7 bits (62), Expect = 1.2
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 22/85 (25%)
Query: 17 YAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 76
YA +R N+++ + P LP FG + + AY +L+ ++
Sbjct: 166 YASYR-RNIFQ---AW-PTAGLPPAFGSWDAFE------------AYFADLLETGVIDDD 208
Query: 77 VLRHFKILPSPRYKTIDDLKYEMRV 101
+ I PSP + T+ E+RV
Sbjct: 209 GDLWWDIRPSPHFGTV-----EVRV 228
>gnl|CDD|222441 pfam13898, DUF4205, Domain of unknown function (DUF4205). The
proteins in this family are uncharacterized but often
named FAM188B.
Length = 341
Score = 26.5 bits (59), Expect = 3.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNG 108
H+ +L + + D K E R L +Y+G
Sbjct: 260 HYSVLFCLNPELLSDWKMERRFDLYYYDG 288
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 26.4 bits (59), Expect = 4.0
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 15 YIYAMHRDPNVYENPDQFNPDRF 37
+ + +P+ NP N DRF
Sbjct: 43 WTRFLKHNPD---NPKWINRDRF 62
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 26.1 bits (58), Expect = 5.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPF 53
I+ + HRD VYE + P F + +Y F
Sbjct: 176 ILKDLERWHRDEEVYEKECRNLPGFATTFDFQPSDELSYDDF 217
>gnl|CDD|178266 PLN02660, PLN02660, pantoate--beta-alanine ligase.
Length = 284
Score = 25.8 bits (57), Expect = 5.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 25 VYENPDQFNPDRFLPEKFGKYPK 47
+Y NP QF P E YP+
Sbjct: 54 IYVNPGQFAPG----EDLDTYPR 72
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 25.6 bits (57), Expect = 6.6
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 30/57 (52%)
Query: 61 IAYKYAML---------------QMKIV--ISTVLRHFKILPSPRYKTIDDLKYEMR 100
IAY+YA+L Q K V +T++RH+K + EMR
Sbjct: 339 IAYEYALLADEDSNAAAFLKSNNQAKYVKDCATMVRHYK-------------RAEMR 382
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.427
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,262,578
Number of extensions: 544751
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 41
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)