RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9538
(117 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 118 bits (297), Expect = 7e-33
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAML 68
+ ++ Y M R +E+P FNPDRF P P++ Y PF+ G+R CI ++A +
Sbjct: 340 NTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHRSCIGQQFAQM 397
Query: 69 QMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
++K+V++ +L+ + P + + TL + + L R
Sbjct: 398 EVKVVMAKLLQRLEFRLVPGQ----RFGLQEQATLKPLDPVLCTLRPR 441
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 115 bits (291), Expect = 5e-32
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
A I+ YA+ RDP Y++ +F+PDR+LPE+ PKY +PF+AG RKC + ++M Q
Sbjct: 360 ADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMAQ 419
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+ ++ + + ++ + + +TL ++ + +
Sbjct: 420 LTLITAALATKYRFEQVAGS----NDAVRVGITLRPHDLLVRPVARH 462
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 112 bits (282), Expect = 1e-30
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 16 IYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIS 75
YA+HRDP + P++F P+RF + Y Y PF +G R CI ++A++ MK+ +
Sbjct: 376 SYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALI 435
Query: 76 TVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
VL++F P +T LK + L + + +ESR
Sbjct: 436 RVLQNFSFKPCK--ETQIPLKLSLGGLLQPEKPVVLKVESR 474
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 110 bits (278), Expect = 4e-30
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
+ R + + FNPDR+L + K+ Y PF AG +CI +A +Q
Sbjct: 351 HQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQ 410
Query: 70 MKIVISTVLRHFKILPSPRY 89
+K + ST+LR ++ Y
Sbjct: 411 IKTIWSTMLRLYEFDLIDGY 430
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 107 bits (270), Expect = 6e-29
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
I+ I MHR + P++F + F P +QPF G R C AM+
Sbjct: 392 TNIILNIGRMHR-LEFFPKPNEFTLENFAKNV----PYRYFQPFGFGPRGCAGKYIAMVM 446
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL---TFYNGIYVNLESR 116
MK ++ T+LR F + + ++ ++ ++L N + + R
Sbjct: 447 MKAILVTLLRRFHVKTLQG-QCVESIQKIHDLSLHPDETKNMLEMIFTPR 495
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 106 bits (266), Expect = 1e-28
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAYKYAM 67
+ +R P + +P F P R+ + ++ + PF AG +C+ +A+
Sbjct: 342 GDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAI 401
Query: 68 LQMKIVISTVLRHFKI-LPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+Q+K + S +LR ++ + P +D ++ + V R
Sbjct: 402 MQIKAIFSVLLREYEFEMAQPPESYRND---HSKMVVQLAQPAAVRYRRR 448
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 105 bits (264), Expect = 2e-28
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
T++ Y R + + + F P+RFL E+ P Y PF G R C+ +A+L+
Sbjct: 290 TTLVLSPYVTQRLH--FPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGRDFALLE 345
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
IV+ R F++ P P + + +VTL G+
Sbjct: 346 GPIVLRAFFRRFRLDPLPFPRVL------AQVTLRPEGGLPARPREE 386
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 105 bits (264), Expect = 3e-28
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAYKYAML 68
+ I H DP++Y +P++F+P+RF P+ P + + PF G R+C+ ++A L
Sbjct: 340 WLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARL 399
Query: 69 QMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLES 115
+MK+ + +++ F P +L+ + + + + V L S
Sbjct: 400 EMKLFATRLIQQFDWTLLPGQ----NLELVVTPSPRPKDNLRVKLHS 442
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 105 bits (264), Expect = 3e-28
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
I H D + P +++P+R + + F AG KCI K+ +LQ
Sbjct: 351 DIIACSPLLSHHDEEAFPEPRRWDPERDEK------VEGAFIGFGAGVHKCIGQKFGLLQ 404
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+K +++T R + + D Y V + V R
Sbjct: 405 VKTILATAFRSYDFQLLRDE--VPDPDYHTMVVGPTASQCRVKYIRR 449
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 103 bits (260), Expect = 1e-27
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 9 DATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAM 67
+M I +HRD ++ ++ ++F P+RF P++ ++PF G R CI ++A+
Sbjct: 350 GDELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNGQRACIGQQFAL 407
Query: 68 LQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+ +V+ +L+HF Y+ L + +TL G V +S+
Sbjct: 408 HEATLVLGMMLKHFDFEDHTNYE----LDIKETLTLK-PEGFVVKAKSK 451
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 98.5 bits (245), Expect = 2e-25
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPF-------AAGNRKCIAY 63
+ Y RDP +++ D+F P+RF+ E+ K ++ GN++C
Sbjct: 388 MLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGK 447
Query: 64 KYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIY 110
+ +L ++ + + R + L + + +
Sbjct: 448 DFVVLVARLFVIEIFRRYDSFDIE--VGTSPLGSSVNFSSLRKASFH 492
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 95.5 bits (238), Expect = 1e-24
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPE---------KFGKYPKYNYQPFAAGNRK 59
D I Y MH DP +Y +P F DR+L E G KY Y PF +G
Sbjct: 367 DDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATI 426
Query: 60 CIAYKYAMLQMKIVISTVLRHFKI-LPSPRYKTIDDLKYEMRVTLTFY--NGIYVNLESR 116
C +A+ ++K + +L +F++ L + K L N I + +
Sbjct: 427 CPGRLFAIHEIKQFLILMLSYFELELIEGQAK-CPPLDQSRAGLGILPPLNDIEFKYKFK 485
Query: 117 Y 117
+
Sbjct: 486 H 486
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 95.1 bits (237), Expect = 2e-24
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 9 DATIMNY-----------IYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGN 57
+ Y + + +E+ +F P+R+L ++ P + + PF G
Sbjct: 369 PTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKINP-FAHLPFGIGK 427
Query: 58 RKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
R CI + A LQ+ + + +++ + I+ + + ++ L + + R
Sbjct: 428 RMCIGRRLAELQLHLALCWIIQKYDIVATDN----EPVEMLHLGILVPSRELPIAFRPR 482
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 93.8 bits (233), Expect = 6e-24
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG---------NRKCI 61
+ Y +DP V++ P+++ PDRF+ + G+ Y ++ G N++C
Sbjct: 371 MLFGYQPFATKDPKVFDRPEEYVPDRFVGD--GEAL-LKYVWWSNGPETESPTVENKQCA 427
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGI 109
+ +L ++ + + R + L + +T I
Sbjct: 428 GKDFVVLITRLFVIELFRRYDSFEIE--LGESPLGAAVTLTFLKRASI 473
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 93.2 bits (232), Expect = 1e-23
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 9 DATIMNY-----------IYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGN 57
D + +Y IYA+ R+P + +P+ F+P R+L + + F G
Sbjct: 361 DLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKNITY-FRNLGFGWGV 419
Query: 58 RKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
R+C+ + A L+M I + +L +F++ D+ + L I
Sbjct: 420 RQCLGRRIAELEMTIFLINMLENFRVEIQHL----SDVGTTFNLILMPEKPISFTFWPF 474
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 87.1 bits (216), Expect = 1e-21
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG----NRKCIAYKY 65
++ +Y + D + +P +F P+RF +N+ P G +C
Sbjct: 310 RQVVLDLYGSNHDAATWADPQEFRPERFRAWDE---DSFNFIPQGGGDHYLGHRCPGEWI 366
Query: 66 AMLQMKIVISTVLRHFKI-LPSPR 88
+ MK+ ++ + +P
Sbjct: 367 VLAIMKVAAHLLVNAMRYDVPDQD 390
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 86.8 bits (215), Expect = 2e-21
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 16 IYAMHRDPNVYENPDQFNPDRFLPE---------KFGKYPKYNYQPFAAGNRKCIAYKYA 66
+ RDP +Y +P+ F +RFL K GK K P+ AG+ C+ YA
Sbjct: 378 FLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYA 437
Query: 67 MLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFY--NGIYVNLESR 116
+ +K + VL H + I + + + V R
Sbjct: 438 VNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQPEHDVPVRYRIR 489
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 85.9 bits (213), Expect = 4e-21
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG----NRKCIAYKYA 66
+++ +Y + DP ++++PD+F P+RF + ++ P G +C
Sbjct: 313 SVLLDLYGTNHDPRLWDHPDEFRPERFAEREE---NLFDMIPQGGGHAEKGHRCPGEGIT 369
Query: 67 MLQMKIVISTVLRHFKILPSPRYKTID 93
+ MK + ++ + +
Sbjct: 370 IEVMKASLDFLVHQIEYDVPEQSLHYS 396
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 80.0 bits (198), Expect = 5e-19
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPE---------KFGKYPKYNYQPFAAGNRKCIA 62
+ + DP +++ P+ F DRFL K G KY P+ + C
Sbjct: 355 CVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPG 414
Query: 63 YKYAMLQMKIVISTVLRHFKI 83
+A+ +K ++ T+L F +
Sbjct: 415 RHFAVHAIKELVFTILTRFDV 435
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 73.0 bits (180), Expect = 1e-16
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KFGKYPKYNYQPFAAGNRKC 60
PK D + ++++ DP + NP+ F+P RFL + K F+ G R+C
Sbjct: 375 PK----DTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRC 430
Query: 61 IAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
I + + +Q+ + IS + +P + + +T+
Sbjct: 431 IGEELSKMQLFLFISILAHQCDFRANP--NEPAKMNFSYGLTIK 472
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 67.6 bits (166), Expect = 1e-14
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIA 62
P+ ++ + H D V+E P +F PDRFL + F G R C+
Sbjct: 378 PE----GMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPG----ANPSALAFGCGARVCLG 429
Query: 63 YKYAMLQMKIVISTVLRHFKILPSPRYKTID-DLKYEMRVTLT 104
A L++ +V++ +L+ F +LP P V L
Sbjct: 430 ESLARLELFVVLARLLQAFTLLPPPVGALPSLQPDPYCGVNLK 472
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 67.2 bits (165), Expect = 2e-14
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNY-QPFAAGNRKCI 61
PK ++ + ++ D + +P++F P+ FL E GK+ +Y +PF+ G R C
Sbjct: 363 PK----GTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNEN-GKFKYSDYFKPFSTGKRVCA 417
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
A +++ +++ +L+HF + P K ID +
Sbjct: 418 GEGLARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCI 460
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 66.8 bits (164), Expect = 2e-14
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNY-QPFAAGNRKCI 61
PK + + ++ RDP+ + NP FNP FL EK G++ K + PF+ G R C
Sbjct: 364 PK----GTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEK-GQFKKSDAFVPFSIGKRNCF 418
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTID 93
A +++ + +TV+++F++ S K ID
Sbjct: 419 GEGLARMELFLFFTTVMQNFRLKSSQSPKDID 450
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 66.4 bits (163), Expect = 3e-14
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNY-QPFAAGNRKCI 61
PK TI+ + ++ D + NP+ F+P FL E G + K Y PF+AG R C+
Sbjct: 365 PK----GTTILISLTSVLHDNKEFPNPEMFDPHHFLDEG-GNFKKSKYFMPFSAGKRICV 419
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
A +++ + ++++L++F + K +D
Sbjct: 420 GEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASV 462
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 66.1 bits (162), Expect = 4e-14
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPK-YNYQPFAAGNRKCI 61
PK T++ +Y++H D + +P+ F+P+RFL G + K PF+ G R C+
Sbjct: 369 PK----GTTVITNLYSVHFDEKYWRDPEVFHPERFLDSS-GYFAKKEALVPFSLGRRHCL 423
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 103
A ++M + + +L+ F + + + DLK + +TL
Sbjct: 424 GEHLARMEMFLFFTALLQRFHLHFPH--ELVPDLKPRLGMTL 463
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 65.7 bits (161), Expect = 6e-14
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN-YQPFAAGNRKCI 61
PK T++ + ++ +D V+E P +F+P+ FL + G + K + PF+AG R C+
Sbjct: 368 PK----GTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQ-GHFVKPEAFLPFSAGRRACL 422
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
A +++ + +++L+HF ++
Sbjct: 423 GEPLARMELFLFFTSLLQHFSFSVPTGQPRP-SHHGVFAFLVS 464
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 64.5 bits (158), Expect = 1e-13
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KFGKYPKYNYQPFAAGNRKC 60
K ++ ++A+H + + PDQF P+RFL P +Y PF AG R C
Sbjct: 369 DK----GTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSC 424
Query: 61 IAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
I A ++ ++++ +L+ F + + L+ +V
Sbjct: 425 IGEILARQELFLIMAWLLQRFDLEVPDDGQLP-SLEGIPKVVFL 467
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 64.5 bits (158), Expect = 1e-13
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KFGKYPK-YNYQPFAAGNRK 59
PK + + ++ DP ++E+P +F P+RFL P F G R+
Sbjct: 378 PK----KCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRR 433
Query: 60 CIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
CI A ++ + ++ +L+ + P K DL +T+
Sbjct: 434 CIGEVLAKWEIFLFLAILLQQLEFSVPPGVKV--DLTPIYGLTMK 476
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 63.4 bits (155), Expect = 3e-13
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNY-QPFAAGNRKCI 61
PK + + + + DP +E P+ FNP FL G + PF+ G R C+
Sbjct: 364 PK----NTEVFPVLSSALHDPRYFETPNTFNPGHFLDAN-GALKRNEGFMPFSLGKRICL 418
Query: 62 AYKYAMLQMKIVISTVLRHFKILPSPRYKTID 93
A ++ + +T+L++F I + ID
Sbjct: 419 GEGIARTELFLFFTTILQNFSIASPVPPEDID 450
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 40.0 bits (94), Expect = 4e-05
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ-PFAAGNRKCIAYKYAMLQMKIVISTVL 78
+RDP +E PD FN R + F +G C+ +A +++IV + VL
Sbjct: 348 NRDPEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGTAFAKNEIEIVANIVL 407
Query: 79 RHF 81
Sbjct: 408 DKM 410
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 38.8 bits (91), Expect = 1e-04
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 14/67 (20%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
+ DP + NP DR P FG G C +I I
Sbjct: 311 GANFDPEHFPNPGSIELDRPNPTSHLAFG-----------RGQHFCPGSALGRRHAQIGI 359
Query: 75 STVLRHF 81
+L+
Sbjct: 360 EALLKKM 366
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+ +RD V+ENPD+FN +R P + FG G+ +CIA A ++ V
Sbjct: 318 SANRDEEVFENPDEFNMNRKWPPQDPLGFG-----------FGDHRCIAEHLAKAELTTV 366
Query: 74 ISTVLRHF 81
ST+ + F
Sbjct: 367 FSTLYQKF 374
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 22/92 (23%)
Query: 21 RDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
RD V + P++F DR P + FG G +C+ + A +Q++I+ +
Sbjct: 345 RDDEVIDRPEEFIIDRPRPRQHLSFG-----------FGIHRCVGNRLAEMQLRILWEEI 393
Query: 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGI 109
L F R + + + + RV F G
Sbjct: 394 LTRF-----SRIEVMAEPE---RVRSNFVRGY 417
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 24/96 (25%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ-PFAAGNRKCIAYKYAMLQMKIVISTVL 78
+RDP V+++PD F+ R P + F G C + + V + +
Sbjct: 312 NRDPEVFDDPDVFDHTR--------PPAASRNLSFGLGPHSCAGQIISRAEATTVFAVLA 363
Query: 79 RHFKILPSPRYKTIDDLKY----------EMRVTLT 104
+ R + ++ ++ + L+
Sbjct: 364 ERY-----ERIELAEEPTVAHNDFARRYRKLPIVLS 394
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 37.6 bits (88), Expect = 3e-04
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 20/75 (26%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+RD VYE+PD + R + FG G +C+ A L+++++
Sbjct: 322 IANRDGTVYEDPDALDIHR--SARHHLAFG-----------FGVHQCLGQNLARLELEVI 368
Query: 74 ISTVLRHFKILPSPR 88
++ ++ P+ R
Sbjct: 369 LNALMDRV---PTLR 380
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 36.8 bits (86), Expect = 5e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
M+RD YENPD F+ R + FG G +C+ A +++I
Sbjct: 320 LMNRDAKAYENPDIFDARR--NARHHVGFG-----------HGIHQCLGQNLARAELEIA 366
Query: 74 ISTVLRHF 81
+ +
Sbjct: 367 LGGLFARI 374
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 36.8 bits (86), Expect = 6e-04
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+ + DP V+++P + +R + FG G +C+ A ++++IV
Sbjct: 323 SANWDPAVFKDPAVLDVER--GARHHLAFG-----------FGPHQCLGQNLARMELQIV 369
Query: 74 ISTVLRHF 81
T+ R
Sbjct: 370 FDTLFRRI 377
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 36.8 bits (86), Expect = 6e-04
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+ DP +++P++ + R + FG G +C+ A L++++
Sbjct: 327 GANHDPEQFDDPERVDFHR--TDNHHVAFG-----------YGVHQCVGQHLARLELEVA 373
Query: 74 ISTVLRHF 81
+ T+LR
Sbjct: 374 LETLLRRV 381
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 36.5 bits (85), Expect = 0.001
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A +RDP + + D+ + R FG G C+ A L+++ V
Sbjct: 314 AANRDPALAPDVDRLDVTR--EPIPHVAFG-----------HGVHHCLGAALARLELRTV 360
Query: 74 ISTVLRHF 81
+ + R F
Sbjct: 361 FTELWRRF 368
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A DP E P++F+ R FG G +CI + A ++++IV
Sbjct: 315 AADFDPAFVEEPERFDITR--RPAPHLAFG-----------FGAHQCIGQQLARIELQIV 361
Query: 74 ISTVLRHF 81
T+ R
Sbjct: 362 FETLFRRL 369
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
A +RDP V+ PD+ + DR ++ A + +
Sbjct: 299 AANRDPEVFAEPDRLDVDRPDADRAL---------SAHRGHPGRLEELVTALATAALRAA 349
Query: 78 LRHFKIL----PSPRYKT 91
+ L P R +
Sbjct: 350 AKALPGLTPSGPVVRRRR 367
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A +RD + + D+ + DR FG G C+ A +++++
Sbjct: 333 AANRDQAQFPDADRIDVDR--TPNQHLGFG-----------HGVHHCLGAPLARVELQVA 379
Query: 74 ISTVLRHF 81
+ +L+
Sbjct: 380 LEVLLQRL 387
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 35.3 bits (82), Expect = 0.002
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+RD + +PD + +R FG G C+ A +++
Sbjct: 323 MANRDEALTPDPDVLDANR--AAVSDVGFG-----------HGIHYCVGAALARSMLRMA 369
Query: 74 ISTVLRHF 81
T+ R F
Sbjct: 370 YQTLWRRF 377
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 35.3 bits (82), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVI 74
+RDP+++ NPD F+ R P F G+ C+ A L+ +I I
Sbjct: 313 NRDPSIFTNPDVFDITR--------------SPNPHLSFGHGHHVCLGSSLARLEAQIAI 358
Query: 75 STVLRHF 81
+T+L+
Sbjct: 359 NTLLQRM 365
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 35.0 bits (81), Expect = 0.002
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 35/111 (31%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAY 63
+ A +RDP +++PD F P R +P F G C+
Sbjct: 323 TPVVAWLPAA-NRDPAEFDDPDTFLPGR--------------KPNRHITFGHGMHHCLGS 367
Query: 64 KYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKY----------EMRVTLT 104
A +++ +V+ + R + + E+ V T
Sbjct: 368 ALARIELSVVLRVLAERV-----SRVDLEREPAWLRAIVVQGYRELPVRFT 413
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 35.0 bits (81), Expect = 0.003
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 30/97 (30%)
Query: 21 RDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
RD V+ NPD+F+ RF P + FG G C+ A L+MKI +
Sbjct: 347 RDEEVFSNPDEFDITRF-PNRHLGFG-----------WGAHMCLGQHLAKLEMKIFFEEL 394
Query: 78 LRHFKILPSPRYKTIDDLKY----------EMRVTLT 104
L + + + + T
Sbjct: 395 LPKL-----KSVELSGPPRLVATNFVGGPKNVPIRFT 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.003
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 29/104 (27%)
Query: 17 YAMHRD-PNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAY---------KYA 66
YA+HR + Y P F+ D +P +Y Y++ I + +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSH----------IGHHLKNIEHPERMT 491
Query: 67 MLQMKIV----ISTVLRHFKILPSPRYKTIDDL----KYEMRVT 102
+ +M + + +RH + ++ L Y+ +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 25.2 bits (54), Expect = 7.7
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 24 NVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAM-----------LQMKI 72
++ + D + L + Q F + I YK+ M + ++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRM 111
Query: 73 VISTVLRHFKILPS------PRYKTIDDLK---YEMR 100
I R + R + L+ E+R
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 34.9 bits (81), Expect = 0.003
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP---FAAGNRKCIAYKYAMLQMKIVIST 76
+RD + +++PD+F+P R K F G C+ A L+ ++ +
Sbjct: 320 NRDSDAHDDPDRFDPSR----------KSGGAAQLSFGHGVHFCLGAPLARLENRVALEE 369
Query: 77 VLRHF 81
++ F
Sbjct: 370 IIARF 374
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 34.9 bits (81), Expect = 0.003
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
+ D + P++F+ R FG G CI A L+++ +
Sbjct: 320 LPNFDERAFTGPEEFDAAR--TPNPHLTFG-----------HGIWHCIGAPLARLELRTM 366
Query: 74 ISTVLRHF 81
+ +
Sbjct: 367 FTKLFTRL 374
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 34.9 bits (81), Expect = 0.003
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A +RDP+V+ +PD+ + DR +G G+ C A +Q +++
Sbjct: 323 AANRDPDVFPDPDRIDLDR--DPNPHLAYG-----------NGHHFCTGAVLARMQTELL 369
Query: 74 ISTVLRHF 81
+ T+L
Sbjct: 370 VDTLLERL 377
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 34.5 bits (80), Expect = 0.003
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
+ D V+ P++F+ R F G C+ + A L++ ++ VLR
Sbjct: 309 NFDEAVFCEPEKFDVQRNPNSHLA---------FGFGTHFCLGNQLARLELSLMTERVLR 359
Query: 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGI 109
P + + D F +G+
Sbjct: 360 RL-----PDLRLVADDSVLPLRPANFVSGL 384
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 34.6 bits (80), Expect = 0.004
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
HRDP + PD+F+PDR G F G C+ A L+ + + +
Sbjct: 335 HRDPTIVGAPDRFDPDRAQIRHLG---------FGKGAHFCLGAPLARLEATVALPALAA 385
Query: 80 HF 81
F
Sbjct: 386 RF 387
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 34.6 bits (80), Expect = 0.004
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKY 65
D ++NY+ A + DP + P +F+P R + FG C+
Sbjct: 358 DWLMLNYVAA-NHDPAQFPEPRKFDPTRP-ANRHLAFGAGSHQ-----------CLGLHL 404
Query: 66 AMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGI 109
A L+M++++ +L + + K RV TF G
Sbjct: 405 ARLEMRVLLDVLLDRV-----DSLELAGEPK---RVNSTFVGGF 440
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 34.5 bits (80), Expect = 0.004
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A +RDP V+ +PD+ + +R FG G C A L+ +++
Sbjct: 320 AANRDPEVFPDPDRIDFER--SPNPHVSFG-----------FGPHYCPGGMLARLESELL 366
Query: 74 ISTVLRHF 81
+ VL
Sbjct: 367 VDAVLDRV 374
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 34.5 bits (80), Expect = 0.004
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 16/65 (24%)
Query: 20 HRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 76
+RD ++ PD F R E FG C+ A L+ I ++
Sbjct: 265 NRDETFFDEPDLFKIGR--REMHLAFGIGIHM-----------CLGAPLARLEASIALND 311
Query: 77 VLRHF 81
+L HF
Sbjct: 312 ILNHF 316
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A +R P+ +E+ D F+ R K FG G C+ A +++ +
Sbjct: 321 AANRHPDWHEDADTFDATR--TVKEHLAFG-----------HGVHFCLGAPLARMEVTLA 367
Query: 74 ISTVLRHF 81
+ ++ F
Sbjct: 368 LESLFGRF 375
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 34.2 bits (79), Expect = 0.005
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
RD V+ PD F+ R + G C A L+ +I + T+ R
Sbjct: 334 LRDGTVFSRPDVFDVRRDTSASLA---------YGRGPHVCPGVSLARLEAEIAVGTIFR 384
Query: 80 HFKILPSPRYKTIDDLKYEMRVTLTFY 106
F P K + + F
Sbjct: 385 RF-----PEMKLKETPVF--GYHPAFR 404
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 34.2 bits (79), Expect = 0.005
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 17/68 (25%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
HR P + +P +F+ R FG G CI A L+ +I
Sbjct: 341 DAHRTPERFPDPHRFDIRR--DTAGHLAFG-----------HGIHFCIGAPLARLEARIA 387
Query: 74 ISTVLRHF 81
+ +L
Sbjct: 388 VRALLERC 395
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 34.1 bits (79), Expect = 0.005
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
+RD V+ + ++F PDR F +G C+ A L+ +I I +
Sbjct: 286 NRDEEVFHDGEKFIPDRNPNPHLS---------FGSGIHLCLGAPLARLEARIAIEEFSK 336
Query: 80 HF 81
F
Sbjct: 337 RF 338
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 33.7 bits (78), Expect = 0.007
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
+RD V+++PD F PDR F +G C+ A L+ +I + +
Sbjct: 286 NRDEEVFKDPDSFIPDRTPNPHLS---------FGSGIHLCLGAPLARLEARIALEEFAK 336
Query: 80 HF 81
F
Sbjct: 337 KF 338
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 33.8 bits (78), Expect = 0.007
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 19/69 (27%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKI 72
A +RD + PD+ + R F G C+ + A L+ ++
Sbjct: 314 AANRDADWMPEPDRLDITR--------------DASGGVFFGHGIHFCLGAQLARLEGRV 359
Query: 73 VISTVLRHF 81
I +
Sbjct: 360 AIGRLFADR 368
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77
A +RDP + +P +F+ R F G C+ A L+ ++ + +
Sbjct: 318 AANRDPKQFPDPHRFDVTRDTRGHLS---------FGQGIHFCMGRPLAKLEGEVALRAL 368
Query: 78 LRHF 81
F
Sbjct: 369 FGRF 372
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 33.4 bits (77), Expect = 0.010
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 19/67 (28%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVI 74
RD + +++PD +R P G +C+ ++ ++ I
Sbjct: 310 SRDRSAFDSPDNIVIER--------------TPNRHLSLGHGIHRCLGAHLIRVEARVAI 355
Query: 75 STVLRHF 81
+ L+
Sbjct: 356 TEFLKRI 362
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 33.1 bits (76), Expect = 0.011
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 30/109 (27%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKY 65
+M Y A + D V+++P FN R P FG G CI
Sbjct: 335 QRVVMFYRSA-NFDEEVFQDPFTFNILRN-PNPHVGFGGT----------GAHYCIGANL 382
Query: 66 AMLQMKIVISTVLRHFKILPSPRYKTIDDLKY----------EMRVTLT 104
A + + ++ + V H P K I + +V T
Sbjct: 383 ARMTINLIFNAVADHM-----PDLKPISAPERLRSGWLNGIKHWQVDYT 426
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 33.0 bits (76), Expect = 0.012
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79
+RDP +++PD+++ R G F +G C+ A L+ ++V++ + R
Sbjct: 330 NRDPRRWDDPDRYDITRKTSGHVG---------FGSGVHMCVGQLVARLEGEVVLAALAR 380
Query: 80 HFKILPSPRYKTIDDLKY----------EMRVTLT 104
+ LK + + LT
Sbjct: 381 KV-----AAIEIAGPLKRRFNNTLRGLESLPIQLT 410
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 33.0 bits (76), Expect = 0.015
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 23/84 (27%)
Query: 10 ATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYK 64
++ A +RDP Y+ PD F+ +R P F AG R C+
Sbjct: 302 DVVVVLAGAANRDPRRYDRPDDFDIER--------------DPVPSMSFGAGMRYCLGSY 347
Query: 65 YAMLQMKIVISTVLRHFKILPSPR 88
A Q++ ++ + R LP R
Sbjct: 348 LARTQLRAAVAALAR----LPGLR 367
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 32.7 bits (75), Expect = 0.017
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 22/93 (23%)
Query: 20 HRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 76
+RD + + +P F+ R P FG G C+ A ++++
Sbjct: 354 NRDESKFADPWTFDLARN-PNPHLGFGGG----------GAHFCLGANLARREIRVAFDE 402
Query: 77 VLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGI 109
+ R P ++ R+ F +GI
Sbjct: 403 LRRQM-----PDVVATEEPA---RLLSQFIHGI 427
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 32.6 bits (75), Expect = 0.017
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 19/67 (28%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVI 74
+RDP + +PD + R F G C+ A + +I +
Sbjct: 333 NRDPARFPDPDVLDVHR--------------AAERQVGFGLGIHYCLGATLARAEAEIGL 378
Query: 75 STVLRHF 81
+L
Sbjct: 379 RALLDGI 385
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 32.6 bits (75), Expect = 0.020
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 18 AMHRDPNVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74
HRDP V+ + D+F+ FG G C+ A L++ +
Sbjct: 331 VAHRDPRVFADADRFDITVKREAPSIAFG-----------GGPHFCLGTALARLELTEAV 379
Query: 75 STVLRHFKILPSPR 88
+ + P+
Sbjct: 380 AALATRL---DPPQ 390
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 32.3 bits (74), Expect = 0.025
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 19/67 (28%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVI 74
D P + R Q F G+ C+ A ++ + +
Sbjct: 327 GLDERENACPMHVDFSR--------------QKVSHTTFGHGSHLCLGQHLARREIIVTL 372
Query: 75 STVLRHF 81
L
Sbjct: 373 KEWLTRI 379
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 32.3 bits (74), Expect = 0.026
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 19/67 (28%)
Query: 20 HRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVI 74
D P + + R + F G +C A +++ + +
Sbjct: 333 GLDDAANPEPWKLDFSR--------------RSISHSTFGGGPHRCAGMHLARMEVIVTL 378
Query: 75 STVLRHF 81
L+
Sbjct: 379 EEWLKRI 385
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 31.9 bits (73), Expect = 0.030
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 20 HRDPNVYENPDQFNPDR 36
D +++P + R
Sbjct: 334 GLDDRHHDDPMTVDLSR 350
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 31.1 bits (71), Expect = 0.053
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 20 HRDPNVYENPDQFNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIS 75
+ DP +E P++ DR L G G +C+ A +++ + +
Sbjct: 312 NLDPASFEAPEEVRFDRGLAPIRHTTMG-----------VGAHRCVGAGLARMEVIVFLR 360
Query: 76 TVLRHF 81
L
Sbjct: 361 EWLGGM 366
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 31.0 bits (71), Expect = 0.069
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 15/68 (22%)
Query: 18 AMHRDPNVY-ENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73
A+ RD + D+F+ R + FG G C + ++ +
Sbjct: 320 ALGRDERAHGPTADRFDLTRTSGNRHISFG-----------HGPHVCPGAALSRMEAGVA 368
Query: 74 ISTVLRHF 81
+ + F
Sbjct: 369 LPALYARF 376
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 1.9
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 2 EPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCI 61
E KE +D+ + + R + E D + K+ Y+PF I
Sbjct: 127 EVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK-------KFLVIAYEPFEN-----I 174
Query: 62 AYK 64
A +
Sbjct: 175 AIE 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.9
Identities = 22/145 (15%), Positives = 37/145 (25%), Gaps = 54/145 (37%)
Query: 3 PKEKIL------DATI-MNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKY----PK---- 47
P + I NY AM + V + + E Y K
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 48 --YNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYK--------------- 90
QP A+ M+ L+ ++P+
Sbjct: 1728 ATQFTQP-------------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 91 ---TIDDLKYEMRVTLTFYNGIYVN 112
+I+ L V + FY G+ +
Sbjct: 1775 DVMSIESL-----VEVVFYRGMTMQ 1794
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural
genomics, structural of infectious diseases; HET: MSE
AMP GOL; 2.00A {Francisella tularensis subsp} PDB:
3qtt_A*
Length = 264
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 28 NPDQFNPDRFLPEKFGKYPK 47
NP QFN P + YP
Sbjct: 60 NPTQFNN----PNDYQTYPN 75
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic
center for structural genomics, JCSG; HET: MSE EPE;
1.60A {Bacteroides thetaiotaomicron vpi-5482}
Length = 443
Score = 26.0 bits (57), Expect = 3.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 17 YAMHRDPNVYENPDQFNPDRFLPEK 41
+ N E+ + FNP ++
Sbjct: 39 GQGNNRINPIEDYNIFNPTELNTDQ 63
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.40A {Thermotoga
maritima}
Length = 280
Score = 25.5 bits (57), Expect = 3.9
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 28 NPDQFNPDRFLPEKFGKYP 46
NP QF P E + +YP
Sbjct: 58 NPTQFGP----NEDYERYP 72
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics,
center for structural of infectious diseases, csgid,
ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp}
PDB: 3uy4_A*
Length = 285
Score = 25.6 bits (57), Expect = 4.2
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 28 NPDQFNPDRFLPEKFGKYP 46
NP QF P E F YP
Sbjct: 60 NPMQFGP----NEDFSSYP 74
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding,
nucleotide-binding, pantothenate biosynthesis; HET: PAJ
PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Length = 283
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 28 NPDQFNPDRFLPEKFGKYP 46
NP QF P E F YP
Sbjct: 59 NPLQFGP----NEDFDAYP 73
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 24.8 bits (53), Expect = 9.4
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 30 DQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
+K+G + Y P GN + +
Sbjct: 105 RNMLIGHLESQKWGAPVQLGYFPDTFGNMGQTPQMMQLANLP 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.427
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,912,530
Number of extensions: 104472
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 90
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)