RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9538
(117 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 94.0 bits (232), Expect = 2e-24
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
+M YA+HRDP + P++F P+RF + Y Y PF +G R CI ++A++ M
Sbjct: 366 VVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNM 425
Query: 71 KIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
K+ + VL++F P +T LK + L + + +ESR
Sbjct: 426 KLALIRVLQNFSFKPCK--ETQIPLKLSLGGLLQPEKPVVLKVESR 469
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 86.3 bits (212), Expect = 1e-21
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 9 DATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAML 68
+ + + + DP +E P+ FNP FL + PF+ G R C+ A
Sbjct: 358 NTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIART 417
Query: 69 QMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 104
++ + +T+L++F I + ID E V
Sbjct: 418 ELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNV 453
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 85.9 bits (211), Expect = 1e-21
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
T++ +Y++H D + +P+ F+P+RFL K PF+ G R C+ A ++M
Sbjct: 360 TVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEM 419
Query: 71 KIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 103
+ + +L+ F + + + DLK + +TL
Sbjct: 420 FLFFTALLQRFHLHFPH--ELVPDLKPRLGMTL 450
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 84.0 bits (206), Expect = 8e-21
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 13 MNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI 72
+ + ++ D + NP+ F+P FL E + PF+AG R C+ A +++ +
Sbjct: 363 LISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFL 422
Query: 73 VISTVLRHFKILPSPRYKTID 93
++++L++F + K +D
Sbjct: 423 FLTSILQNFNLKSLVDPKNLD 443
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 79.0 bits (193), Expect = 4e-19
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 11 TIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
+M I +HRD ++ ++ ++F P+RF P++ ++PF G R CI ++A+ +
Sbjct: 350 ELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNGQRACIGQQFALHE 407
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+V+ +L+HF Y +L + +TL G V +S+
Sbjct: 408 ATLVLGMMLKHFDFEDHTNY----ELDIKETLTLK-PEGFVVKAKSK 449
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 73.4 bits (178), Expect = 4e-17
Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFL-PEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
+ +R P + +P F P R+ P + ++ + PF AG +C+ +A++Q
Sbjct: 340 LVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQ 399
Query: 70 MKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+K + S +LR ++ + + ++ + V R
Sbjct: 400 IKAIFSVLLREYEFEMAQPPE--SYRNDHSKMVVQLAQPAAVRYRRR 444
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 72.1 bits (175), Expect = 9e-17
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
IM + +RD V+ NPD+F+ RF + F G C+ A L+M
Sbjct: 337 RIMLSYPSANRDEEVFSNPDEFDITRFP---------NRHLGFGWGAHMCLGQHLAKLEM 387
Query: 71 KIVISTVLRHFKIL 84
KI +L K +
Sbjct: 388 KIFFEELLPKLKSV 401
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 69.5 bits (168), Expect = 8e-16
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
I+ + +RD V+ENPD+FN +R P + F G+ +CIA A ++
Sbjct: 306 GIIASNQSANRDEEVFENPDEFNMNRKWPP-------QDPLGFGFGDHRCIAEHLAKAEL 358
Query: 71 KIVISTVLRHFK 82
V ST+ + F
Sbjct: 359 TTVFSTLYQKFP 370
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 69.4 bits (168), Expect = 8e-16
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
I+ A +R P+ +E+ D F+ R + E + F G C+ A +++
Sbjct: 308 PILASYAAANRHPDWHEDADTFDATRTVKE---------HLAFGHGVHFCLGAPLARMEV 358
Query: 71 KIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLES 115
+ + ++ F L ++L + + + V L +
Sbjct: 359 TLALESLFGRFPDLRLA--DPAEELPPVPSLISNGHQRLPVLLHA 401
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 69.4 bits (168), Expect = 1e-15
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 13 MNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI 72
+ + + + F P+RFL E+ P Y PF G R C+ +A+L+ I
Sbjct: 291 TLVLSPYVTQRLHFPDGEAFRPERFLEERGT--PSGRYFPFGLGQRLCLGRDFALLEGPI 348
Query: 73 VISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNL 113
V+ R F++ P P + +VTL G+
Sbjct: 349 VLRAFFRRFRLDPLP------FPRVLAQVTLRPEGGLPARP 383
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 68.9 bits (167), Expect = 1e-15
Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG----NRKCIAYKYA 66
+++ +Y + DP ++++PD+F P+RF + ++ P G +C
Sbjct: 308 SVLLDLYGTNHDPRLWDHPDEFRPERFAEREEN---LFDMIPQGGGHAEKGHRCPGEGIT 364
Query: 67 MLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116
+ MK + ++ + + R+ +G ++ R
Sbjct: 365 IEVMKASLDFLVHQIEYDVPEQSLHYS----LARMPSLPESGFVMSGIRR 410
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 67.5 bits (163), Expect = 5e-15
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
T++ A +RDP + +P +F+ R + F G C+ A L+
Sbjct: 309 TVLVANGAANRDPKQFPDPHRFDVTRD---------TRGHLSFGQGIHFCMGRPLAKLEG 359
Query: 71 KIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLE 114
++ + + F L DD+ + + L + + V L+
Sbjct: 360 EVALRALFGRFPALSLG--IDADDVVWRRSLLLRGIDHLPVRLD 401
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 65.2 bits (157), Expect = 2e-14
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
++ I +RD + +PD + +R + F G C+ A +
Sbjct: 313 YVLCSILMANRDEALTPDPDVLDANRA---------AVSDVGFGHGIHYCVGAALARSML 363
Query: 71 KIVISTVLRHFK 82
++ T+ R F
Sbjct: 364 RMAYQTLWRRFP 375
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 63.7 bits (153), Expect = 8e-14
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
+ I + RD V+ PD F+ R + G C A L+
Sbjct: 310 MVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYGRGPHVCPGVSLARLEA 360
Query: 71 KIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLE 114
+I + T+ R F P K + + + V L+
Sbjct: 361 EIAVGTIFRRF-----PEMKLKETPVFGYHPAFRNIESLNVILK 399
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 62.9 bits (151), Expect = 2e-13
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
++ + A +RDP + + D+ + R + F G C+ A L+++
Sbjct: 304 VICSLPAANRDPALAPDVDRLDVTR---------EPIPHVAFGHGVHHCLGAALARLELR 354
Query: 72 IVISTVLRHFKIL 84
V + + R F L
Sbjct: 355 TVFTELWRRFPAL 367
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 61.7 bits (148), Expect = 5e-13
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
++ + + DP + NP DR P ++ F G C
Sbjct: 303 LVLVLLEGANFDPEHFPNPGSIELDRPNP--------TSHLAFGRGQHFCPGSALGRRHA 354
Query: 71 KIVISTVLRHFK 82
+I I +L+
Sbjct: 355 QIGIEALLKKMP 366
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 61.4 bits (147), Expect = 6e-13
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 11 TIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQM 70
+ A +RDP V+ +PD+ + +R + F G C A L+
Sbjct: 306 AVYVSYLAANRDPEVFPDPDRIDFERS---------PNPHVSFGFGPHYCPGGMLARLES 356
Query: 71 KIVISTVLRHFK 82
++++ VL
Sbjct: 357 ELLVDAVLDRVP 368
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 59.0 bits (141), Expect = 4e-12
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 11 TIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQ 69
++ A+ RD + D+F+ R + F G C + ++
Sbjct: 306 ALIVSYGALGRDERAHGPTADRFDLTRTSG--------NRHISFGHGPHVCPGAALSRME 357
Query: 70 MKIVISTVLRHFKIL 84
+ + + F L
Sbjct: 358 AGVALPALYARFPHL 372
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 58.6 bits (140), Expect = 6e-12
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
I+ D P + R K ++ F G+ C+ A ++
Sbjct: 308 ILLPQMLSGLDERENACPMHVDFSR---------QKVSHTTFGHGSHLCLGQHLARREII 358
Query: 72 IVISTVLRHFK 82
+ + L
Sbjct: 359 VTLKEWLTRIP 369
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 57.1 bits (136), Expect = 2e-11
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 13 MNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI 72
+I + +RD V+++PD F PDR + F +G C+ A L+ +I
Sbjct: 279 RVWIASANRDEEVFKDPDSFIPDRT---------PNPHLSFGSGIHLCLGAPLARLEARI 329
Query: 73 VISTVLRHFKILP 85
+ + F++
Sbjct: 330 ALEEFAKKFRVKE 342
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 53.7 bits (127), Expect = 3e-10
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 12 IMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMK 71
+ +I + +RD V+ + ++F PDR + F +G C+ A L+ +
Sbjct: 278 VRVWIASANRDEEVFHDGEKFIPDRN---------PNPHLSFGSGIHLCLGAPLARLEAR 328
Query: 72 IVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLES 115
I I + F+ + I D + L Y + V L+S
Sbjct: 329 IAIEEFSKRFRHIE------ILDTEKVPNEVLNGYKRLVVRLKS 366
>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
small subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 214
Score = 26.4 bits (57), Expect = 0.95
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 3 PKEKILDATIMNYIYAMHRDPNVYE 27
K+ D + I+ +P +Y
Sbjct: 185 SDAKLCDPDDVRVIFLTAHNPKLYH 209
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.7 bits (55), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 8 LDATIMNYIYAMHRDPNVYENPDQFN 33
LD + I + + + +PDQF
Sbjct: 248 LDKDELGEIAKLDQGKRLGPDPDQFG 273
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.427
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,319
Number of extensions: 22708
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 37
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)