RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9539
(222 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 159 bits (404), Expect = 2e-46
Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 6 KQHEDSNNNGVPNRK-------ITMIDLQKDGFSEEQLMQETITLI-------------- 44
++ ++ ++ + + + + ++E+L + L
Sbjct: 225 EERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWA 284
Query: 45 -------------IFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYI-IA 90
+ EE+ + GD R PTY++LQNMP LD IKE LR++P + +
Sbjct: 285 LYELAKHPEVQEKLREEIDEVIGDK--RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLP 342
Query: 91 RRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP 150
R + ++ I Y IPK ++ +YA+HRDP V+ NP++F+P+RFL E + + P
Sbjct: 343 REVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLP 402
Query: 151 FAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSP 185
F AG R C+ + A ++MK+ ++T+L++F++ P
Sbjct: 403 FGAGPRNCLGERLARMEMKLFLATLLQNFEVELPP 437
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 120 bits (304), Expect = 2e-32
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 26/165 (15%)
Query: 31 FSEEQLMQETITLII-------------FEELHSIFGDDKERCPTYEELQNMPVLDRCIK 77
S++++ E ITL++ L D + + P+L+ ++
Sbjct: 232 LSDDEIRDELITLLVAGHETTANALAWALYALLRH-PDQLAK---LRAEPDRPLLEAVVE 287
Query: 78 EVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLP 137
E LR+YPP + R ++++G Y IP ++ I A +RDP V+ +PD+F+P+RF
Sbjct: 288 ETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN- 346
Query: 138 EKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKIL 182
+ PF G +C+ A L++K+ ++ +LR F +L
Sbjct: 347 --------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLL 383
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 103 bits (258), Expect = 1e-25
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPK 106
E+ + G + P+ + L + +L+ I E LR+YPP ++ R +IK+GD IPK
Sbjct: 355 AEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPK 411
Query: 107 DATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAM 165
+I + A+H ++ ++ ++FNPDRF F P ++ PFAAG R CI +AM
Sbjct: 412 GLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFA--PGRHFIPFAAGPRNCIGQAFAM 469
Query: 166 LQMKIVISTVLRHFKILPSPRYK 188
++ KI+++ ++ F S Y+
Sbjct: 470 MEAKIILAMLISKFSFTISDNYR 492
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 101 bits (254), Expect = 4e-25
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYP-PGYIIARRIRREIKIGDYDIP 105
EEL + R PTYE+++ + L RCI E +R+YP P +I R ++ G Y +
Sbjct: 317 EELDRVLQG---RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVN 373
Query: 106 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPK-----YNYQPFAAGNRKCIA 160
IM +Y +HR P V+E ++F P+RF + G P + Y PF+ G RKC+
Sbjct: 374 AGQDIMISVYNIHRSPEVWERAEEFVPERFDLD--GPVPNETNTDFRYIPFSGGPRKCVG 431
Query: 161 YKYAMLQMKIVISTVLRHFKI 181
++A+L+ + ++ +L+ +
Sbjct: 432 DQFALLEAIVALAVLLQRLDL 452
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 93.7 bits (233), Expect = 2e-22
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 44 IIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYII-ARRIRREIKIGDY 102
++ E+ + GD++ T E+L N+P L+ E LR Y P ++ R + + +G Y
Sbjct: 298 RLYREIREVCGDER---VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGY 354
Query: 103 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYK 162
DIP I IY + D +ENP++++P+RFL EK+ Y F AG R C
Sbjct: 355 DIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSL 414
Query: 163 YAMLQMKIVISTVLRHF 179
AML + I+ +++ F
Sbjct: 415 QAMLIACMAIARLVQEF 431
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 78.2 bits (193), Expect = 8e-17
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 41 ITLIIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPG-YIIARRIRREIKI 99
I + E+ S + + Q+ P IKE LR P + + R +I I
Sbjct: 316 IQEKAYNEIKSTVNGRNK--VLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIII 373
Query: 100 GD-YDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKC 158
G + IPKDA I+ Y++ R+ +ENP+QF+P RFL + PF+ G R C
Sbjct: 374 GGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNC 429
Query: 159 IAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLK 194
+ ++A ++ + S ++ +FK+ K+ID K
Sbjct: 430 VGQQFAQDELYLAFSNIILNFKL------KSIDGKK 459
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 77.3 bits (190), Expect = 2e-16
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPK 106
EE+ S+ GD R PT E+++ + R I E LR+YP ++ RR +G Y I +
Sbjct: 430 EEVDSVLGD---RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKR 486
Query: 107 DATIMNYIYAMHRDPNVYENPDQFNPDRFL---PEKFGKYPKYNYQPFAAGNRKCIAYKY 163
I ++ +HR P +++ ++FNP+R+ P ++Y PF G RKC+ +
Sbjct: 487 GEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMF 546
Query: 164 AMLQMKIVISTVLRHFKILPSP 185
A + + + ++R F +P
Sbjct: 547 ASFENVVATAMLVRRFDFQLAP 568
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 76.8 bits (189), Expect = 2e-16
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE-IKIGDYDIP 105
EEL ++ G D R + +L + L IKE R++P + R+ E +I Y IP
Sbjct: 336 EELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIP 393
Query: 106 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLP--EKFG---KYPKYNYQPFAAGNRKCIA 160
K AT++ ++A+ RDP + +P +F PDRFLP E G K + PF AG R C
Sbjct: 394 KGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAG 453
Query: 161 YKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 202
+ L+M +++ L H +T D L E LT
Sbjct: 454 LSWG-LRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLT 494
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 75.5 bits (186), Expect = 6e-16
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIR-REIKIGDYDIP 105
+EL ++ G + T + +P L +KE LR++ ++ + + K+G YDIP
Sbjct: 332 DELDTVLGPGNQ--VTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIP 389
Query: 106 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPFAAGNRKCIAYK 162
++ I+ + + +P +++NP++F P+RFL E+ N + PF G R C
Sbjct: 390 AESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGII 449
Query: 163 YAMLQMKIVISTVLRHFKILPSPRYKTID 191
A+ + IV+ ++++F++LP P ID
Sbjct: 450 LALPILGIVLGRLVQNFELLPPPGQSKID 478
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 75.4 bits (185), Expect = 6e-16
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 45 IFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPG-YIIARRIRREIKIGDYD 103
+ +E+ + GDD+E + E++ MP L + E LR +PP +++ + ++++G Y
Sbjct: 343 LHDEIKAKTGDDQEEV-SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYL 401
Query: 104 IPKDATIMNYIYA-MHRDPNVYENPDQFNPDRFLPEKFGK------YPKYNYQPFAAGNR 156
IPK AT+ N++ A M RD +E P +F P+RFL G+ + PF G R
Sbjct: 402 IPKGATV-NFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRR 460
Query: 157 KCIAYKYAMLQMKIVISTVLRHFK 180
C AML ++ ++ ++R F+
Sbjct: 461 ICAGLGIAMLHLEYFVANMVREFE 484
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 72.9 bits (179), Expect = 4e-15
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 45 IFEELHSIFGDDKERCPTYEELQNMPVLDRCI-KEVLRMYPPG-YIIARRIRREIKIGDY 102
I EEL S+ G + R +L ++ L RC+ +E RM+P G ++I R I Y
Sbjct: 333 IQEELDSVVG--RNRMVQESDLVHLNYL-RCVVRETFRMHPAGPFLIPHESLRATTINGY 389
Query: 103 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKY-----PKYNYQPFAAGNRK 157
IP + + + R+ ++++ ++F P+R P + + P + PF+AG RK
Sbjct: 390 YIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRK 449
Query: 158 CIAYKYAMLQMKIVISTVLRHFKILPSP--RYKTID 191
C + + + ++ + F P R + ID
Sbjct: 450 CPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDID 485
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 71.4 bits (175), Expect = 2e-14
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 65 ELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVY 124
+L+ + L +KE LR++PP ++ + ++ Y IPK + +M +A+ RD N +
Sbjct: 359 DLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW 418
Query: 125 ENPDQFNPDRFLPEKFGKYPKYNYQ--PFAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
E+PD F P RFL + +++ PF +G R C + + + + ++ +L F
Sbjct: 419 EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCF 475
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 70.9 bits (174), Expect = 2e-14
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 121
T ++++ M L + I E LR+ + R + ++++ Y IPK ++ + +H DP
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 122 NVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
VY NP +F+P R+ + + + PF G+R C A L+ IS L HF
Sbjct: 403 EVYPNPKEFDPSRW--DNYTPKA-GTFLPFGLGSRLCPGNDLAKLE----ISIFLHHF 453
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 71.0 bits (174), Expect = 2e-14
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 34 EQLMQETITLIIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRI 93
E L +I EE+ + G + R +L +P L KE R +P + R+
Sbjct: 315 EMLKNPSILKRAHEEMDQVIG--RNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRV 372
Query: 94 RRE-IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKY-PKYN---Y 148
+ ++ Y IPK+ + I+A+ RDP+V+ENP++F P+RFL EK K P+ N
Sbjct: 373 STQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFEL 432
Query: 149 QPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
PF AG R C + ++ ++ ++ T++ F
Sbjct: 433 IPFGAGRRICAGTRMGIVLVEYILGTLVHSF 463
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 69.7 bits (171), Expect = 6e-14
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 30/153 (19%)
Query: 45 IFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYD- 103
I EE + G ++E ++EE++ M L + E +R++PP ++ + K D
Sbjct: 330 IREEADRVMGPNQE-AASFEEMKEMHYLHAALYESMRLFPP-------VQFDSKFAAEDD 381
Query: 104 -------IPKDATIMNYIYAMHRDPNVYENPD--QFNPDR------FLPEKFGKYPKYNY 148
+ K + + YAM R ++ PD +F P+R F+PE KYP
Sbjct: 382 VLPDGTFVAKGTRVTYHPYAMGRMERIW-GPDCLEFKPERWLKNGVFVPENPFKYPV--- 437
Query: 149 QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKI 181
F AG R C+ + A+++MK V V+R F I
Sbjct: 438 --FQAGLRVCLGKEMALMEMKSVAVAVVRRFDI 468
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 64.7 bits (157), Expect = 3e-12
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDYDIP 105
+E+ ++ GD + + E++ N+P L IKE LR+ P ++ R + KIG YDIP
Sbjct: 327 DEVRNVIGD--KGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIP 384
Query: 106 KDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKCIAY 161
I +A+ RD + +NP++F P+RF+ E G K + PF +G R C A
Sbjct: 385 AKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAM 444
Query: 162 KYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFY 204
+ ++I + +L F P+ +D+K ++ L +
Sbjct: 445 HLGIAMVEIPFANLLYKFD-WSLPKGIKPEDIKMDVMTGLAMH 486
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 62.5 bits (151), Expect = 2e-11
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRD 120
T ++++N+P +KE LR+ P +I R ++ KI YDIP T+ +A+ RD
Sbjct: 343 TEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRD 402
Query: 121 PNVY-ENPDQFNPDRFLPEKFG-KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 178
+ NPD+F P+RFL ++ K Y + PF +G R C + +++ + +L +
Sbjct: 403 EKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLN 462
Query: 179 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVP-PPSQINE 217
F P DD+ ++ L + ++ P ++N+
Sbjct: 463 FN-FKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEKVNK 501
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 59.5 bits (144), Expect = 2e-10
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 121
+E+ + M I E LR+ + R+ ++++ YDIP ++ I A+H D
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 122 NVYENPDQFNPDRFLPE-------KFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 174
++Y+ P FNP R+ N+ PF G R C + A L+M + I
Sbjct: 396 SLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHH 455
Query: 175 VLRHFK 180
++ +F
Sbjct: 456 LVLNFN 461
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 58.3 bits (141), Expect = 5e-10
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYP-----PGYIIARRIRREIKIGDYDIPKDATIMNYI-Y 115
TY+ L + L I E LR+YP P I+ + + D K ++ Y+ Y
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDV-----LPDGTKVKAGGMVTYVPY 418
Query: 116 AMHRDPNVY-ENPDQFNPDRFLPEK-FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIS 173
+M R + + F P+R++ + F + + F AG R C+ A LQMK+ ++
Sbjct: 419 SMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALA 478
Query: 174 TVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYV 209
+ R FK P + +KY M L+ NG+ V
Sbjct: 479 LLCRFFKFQLVPGH----PVKYRMMTILSMANGLKV 510
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 57.7 bits (139), Expect = 8e-10
Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 64 EELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPN 122
E+L+ + L + E +R+YPP + + ++ + + ++ I+ IYA+ R +
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 123 VY-ENPDQFNPDRFLPEKFG--KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH- 178
V+ E+ F P+R++ + G P Y + F +G R C+ A+LQMKIV ++++
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNY 468
Query: 179 -FKILPSPRYKTIDD----LKYEMRVTLT 202
FK++ + + I +K+ ++VT+T
Sbjct: 469 DFKVIEGHKIEAIPSILLRMKHGLKVTVT 497
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 56.9 bits (137), Expect = 1e-09
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 47 EELHSIFGDDKE-RCPTYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIP 105
EE +I D +E T+E+ + MP+ R I+E LR+ R +++ Y IP
Sbjct: 303 EEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIP 362
Query: 106 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN-YQPFAAGNRKCIAYKYA 164
K ++ +H +++ +P +F+P RF PK N + PF G C + A
Sbjct: 363 KGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVA-----PKPNTFMPFGNGTHSCPGNELA 417
Query: 165 MLQMKIVI 172
L++ ++I
Sbjct: 418 KLEISVLI 425
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 55.9 bits (135), Expect = 3e-09
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 34 EQLMQETITLIIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPGYIIA--- 90
+QL +E + L + L + G+ + + ++P I E LRM G II
Sbjct: 286 QQLTEENMKL---KRLKADTGEPL----YWTDYMSLPFTQNVITETLRM---GNIINGVM 335
Query: 91 RRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQP 150
R+ ++++I Y IPK ++ Y ++H D Y+NP QFNP R+ EK ++ P
Sbjct: 336 RKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRW-QEKDMN--NSSFTP 392
Query: 151 FAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
F G R C A L+ S L H
Sbjct: 393 FGGGQRLCPGLDLARLE----ASIFLHHL 417
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 55.4 bits (133), Expect = 4e-09
Identities = 31/128 (24%), Positives = 58/128 (45%)
Query: 63 YEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPN 122
+ + ++MP + E LR+ I RR +I++ Y IPK + A+H D
Sbjct: 323 WSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHE 382
Query: 123 VYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKIL 182
+++ FNP R+ P + PF G R C Y+ A + + + + ++ F +
Sbjct: 383 YFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWV 442
Query: 183 PSPRYKTI 190
P+ + K +
Sbjct: 443 PAEQDKLV 450
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 53.4 bits (129), Expect = 2e-08
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKI----GDYDIPKDATIMNYIYAM 117
T+ L+ MP++ + E LR+ PP R R + I ++I K + Y +
Sbjct: 326 TFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLV 385
Query: 118 HRDPNVYENPDQFNPDRFL 136
RDP V++ P++F PDRF+
Sbjct: 386 TRDPKVFDRPEEFVPDRFM 404
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 53.1 bits (127), Expect = 3e-08
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 34 EQLMQETITLIIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYPPG-YIIARR 92
E L I +EL + G K+R ++ N+ L C +E R++P Y+
Sbjct: 340 EMLKNPEILRKALKELDEVVG--KDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHV 397
Query: 93 IRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFL------PEKFGKYPKY 146
R++ +G Y IPK + I + R+P ++++P + P+R L E +
Sbjct: 398 ARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEM 457
Query: 147 NYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
+ F+ G R C+ K + M ++++ L+ F
Sbjct: 458 RFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 43.5 bits (102), Expect = 4e-05
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 47 EELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLRMYP-PGYIIARRIRREIKIGDYDIP 105
EE+ + G KER ++ + + I+E R++P + + + + Y IP
Sbjct: 366 EEIDRVVG--KERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIP 423
Query: 106 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPFAAGNRKCIAYK 162
K + ++ Y + R+P V+ +P F P+R L E N + F+ G R C A
Sbjct: 424 KGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPA 483
Query: 163 YAMLQMKIVISTVLRHFK 180
++++ +L+ FK
Sbjct: 484 LGTAITTMMLARLLQGFK 501
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 41.7 bits (98), Expect = 2e-04
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 62 TYEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 121
+ + ++M I E R+ + R+ +++++ Y IPK I Y ++ DP
Sbjct: 319 DWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDP 378
Query: 122 NVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 179
+Y +P FNP R+L + + + F G R C + +++ IST L +F
Sbjct: 379 FLYPDPMTFNPWRWLDKSLESHNYFFL--FGGGTRLCPGKELGIVE----ISTFLHYF 430
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 29.4 bits (66), Expect = 1.7
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 52 IFGDDKERCPTYEELQNMPVLDRCIKEVLRMYP 84
+ G + +Y + N+P L+ + +L M+P
Sbjct: 292 VIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFP 324
>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated.
Length = 186
Score = 28.5 bits (65), Expect = 2.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 193 LKYEMRVTLTFYNG--IYVPPPSQINEEVQQT 222
LK M VT+ FYNG I V P+ + EV +T
Sbjct: 105 LKEGMEVTVVFYNGEPISVELPNFVELEVTET 136
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P. function:
involved in peptide bond synthesis. stimulate efficient
translation and peptide-bond synthesis on native or
reconstituted 70S ribosomes in vitro. probably functions
indirectly by altering the affinity of the ribosome for
aminoacyl-tRNA, thus increasing their reactivity as
acceptors for peptidyl transferase (by similarity). The
trusted cutoff of this model is set high enough to
exclude members of TIGR02178, an EFP-like protein of
certain Gammaproteobacteria [Protein synthesis,
Translation factors].
Length = 184
Score = 28.2 bits (64), Expect = 2.7
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 193 LKYEMRVTLTFYNG--IYVPPPSQINEEVQQT 222
LK M V++TFYNG I V P+ + EV +T
Sbjct: 104 LKENMEVSVTFYNGEPIGVELPNFVELEVTET 135
>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1). All proteins
in this family with known functions are ATP-dependent
DNA ligases. Functions include DNA repair, DNA
replication, and DNA recombination (or any process
requiring ligation of two single-stranded DNA sections).
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 514
Score = 28.1 bits (63), Expect = 3.7
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 30 GFSEEQL--MQETITLIIFEELHSIFGDDKERCPTYEELQNMPVLDRCIKEVLR--MYPP 85
GF++ L + + + + + S P V + E+ + Y
Sbjct: 423 GFTDADLQELGKKLPPLWIDPPGSRVPSILPDEP-DIWPDPAIVWEVTGAEITKSPAYKA 481
Query: 86 GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHR 119
I+ R R +I D P+DAT + I ++
Sbjct: 482 N-GISLRFPRFSRIRDDKGPEDATTIEQIKELYE 514
>gnl|CDD|234168 TIGR03328, salvage_mtnB, methylthioribulose-1-phosphate
dehydratase. Members of this family are the
methylthioribulose-1-phosphate dehydratase of the
methionine salvage pathway. This pathway allows
methylthioadenosine, left over from polyamine
biosynthesis, to be recycled to methionine [Amino acid
biosynthesis, Aspartate family].
Length = 193
Score = 27.6 bits (62), Expect = 4.7
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 38 QETITLIIFEELHSIFGDDKERC----PTYEELQNMPVLDRCIKEVLRMYP--PGYIIAR 91
L +E L ++ G P +E Q++ L + L YP PG +I
Sbjct: 101 NGAFELEGYEMLKALPGITTHEDKLTIPIFENTQDIARLADSVAPYLEAYPDVPGVLIRG 160
>gnl|CDD|111311 pfam02404, SCF, Stem cell factor. Stem cell factor (SCF) is a
homodimer involved in hematopoiesis. SCF binds to and
activates the SCF receptor (SCFR), a receptor tyrosine
kinase. The crystal structure of human SCF has been
resolved and a potential receptor-binding site
identified.
Length = 273
Score = 27.6 bits (61), Expect = 5.0
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 116 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI---VI 172
A ++ ++ E+ RF PE F F NR A+K + + V+
Sbjct: 116 AEDKNKDIKESGKLPEERRFTPENF----------FRIFNRSIDAFKDFAVALDTSDCVM 165
Query: 173 STVL 176
S+ L
Sbjct: 166 SSTL 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.416
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,074,896
Number of extensions: 1195331
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 42
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)