BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy954
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 121 CDGSKFFCRNGKCISRMWXXXXXXXXXXXXXXXPNYCNVQITGVSQPPGELGVPGHVQ-- 178
C+ ++F C++GKCIS W C V+ G+ G V
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----LSVTCKSGDFSCGGRVNRC 79
Query: 179 ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET----EFTCTENKAWNRAQCIPKKWLC 234
I + G Q N + + C +T EF C + K CI ++++C
Sbjct: 80 IPQFWRCDG--------QVDCDNGSDEQGCPPKTCSQDEFRCHDGK------CISRQFVC 125
Query: 235 DGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KE 293
D D DC+DG+DE + CP + C P F C + CI W CD+D DC DGSDE +
Sbjct: 126 DSDRDCLDGSDEAS----CPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 180
Query: 294 CHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
C Y CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 181 CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 228
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
N + CIP+ W CD DPDC DG+DE + S CS +F C +G CI++ W
Sbjct: 153 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 212
Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
CD DC D SDE + C TC +EF C + CI + CD E DC D SDE C
Sbjct: 213 CDGGPDCKDKSDE-ENC--AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 225 AQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDC 284
+CI W CDG PDC D +DE A+ ++C PD+F C +G CI+ CD + DC
Sbjct: 204 GECIHSSWRCDGGPDCKDKSDEENCAV-----ATCRPDEFQCSDGNCIHGSRQCDREYDC 258
Query: 285 GDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
D SDE C + +F C + +CI C+ DC D SDE
Sbjct: 259 KDMSDE-VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 305
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 604 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 662
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
C + NGGC C P P + C C + L + R C+ +
Sbjct: 663 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 121 CDGSKFFCRNGKCISRMWXXXXXXXXXXXXXXXPNYCNVQITGVSQPPGELGVPGHVQ-- 178
C+ ++F C++GKCIS W C V+ G+ G V
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----LSVTCKSGDFSCGGRVNRC 61
Query: 179 ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET----EFTCTENKAWNRAQCIPKKWLC 234
I + G Q N + + C +T EF C + K CI ++++C
Sbjct: 62 IPQFWRCDG--------QVDCDNGSDEQGCPPKTCSQDEFRCHDGK------CISRQFVC 107
Query: 235 DGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KE 293
D D DC+DG+DE + CP + C P F C + CI W CD+D DC DGSDE +
Sbjct: 108 DSDRDCLDGSDEAS----CPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 162
Query: 294 CHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
C Y CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 163 CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 210
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
N + CIP+ W CD DPDC DG+DE + S CS +F C +G CI++ W
Sbjct: 135 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 194
Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
CD DC D SDE + C TC +EF C + CI + CD E DC D SDE C
Sbjct: 195 CDGGPDCKDKSDE-ENC--AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 225 AQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDC 284
+CI W CDG PDC D +DE A+ ++C PD+F C +G CI+ CD + DC
Sbjct: 186 GECIHSSWRCDGGPDCKDKSDEENCAV-----ATCRPDEFQCSDGNCIHGSRQCDREYDC 240
Query: 285 GDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
D SDE C + +F C + +CI C+ DC D SDE
Sbjct: 241 KDMSDE-VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 287
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 586 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHQLTQPRGVN 644
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
C + NGGC C P P + C C + L + R C+ +
Sbjct: 645 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSS-EEFACQNFKCIRK 316
+C P+QFSC +GRCI W CD D+DCGD SDE C Y TC +F C N +CI
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASC--AYPTCFPLTQFTCNNGRCINI 61
Query: 317 TYHCDGEDDCGDRSDEFNCNY 337
+ CD ++DCGD SDE C++
Sbjct: 62 NWRCDNDNDCGDNSDEAGCSH 82
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 225 AQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSP-DQFSCGNGRCINTGWLCDHDND 283
+CIP W CD D DC D +DE+ + +C P QF+C NGRCIN W CD+DND
Sbjct: 15 GRCIPISWTCDLDDDCGDRSDESASC----AYPTCFPLTQFTCNNGRCININWRCDNDND 70
Query: 284 CGDGSDEG 291
CGD SDE
Sbjct: 71 CGDNSDEA 78
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
RTC +F+C + +CI ++ CD +DDCGDRSDE
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 36
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 5 TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIH 64
T V+ + +PFA+T+ + +YWTD + K+TG + E+ + SP DIH
Sbjct: 198 TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIH 256
Query: 65 VYSADSQKCSVNPCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
+S Q + NPC I NGGC+ C P +C C KL+ G+ C
Sbjct: 257 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PFA+T+ + +YWTD + K+TG + E+ + SP DIH +S Q + N
Sbjct: 207 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIHAFSQQRQPNATN 265
Query: 77 PCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
PC I NGGC+ C P +C C KL+ G+ C
Sbjct: 266 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PFA+T+ + +YWTD + K+TG + E+ + SP DIH +S Q + N
Sbjct: 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIHAFSQQRQPNATN 273
Query: 77 PCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
PC I NGGC+ C P +C C KL+ G+ C
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 5 TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED----SP 60
TG +++ + F T+ +Y+YWTD Q R + R K + + ++ +L D
Sbjct: 511 TGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV-IIDQLPDLMGLKA 569
Query: 61 RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
++H + NPC NGGC+ C P G C C +L+++ + C+
Sbjct: 570 TNVH------RVIGSNPCAEENGGCSHLCLYRPQGL-RCACPIGFELISDMKTCIV 618
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PFA+T+ + +YWTD + K+TG + E+ + SP DIH +S Q + N
Sbjct: 207 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIHAFSQQRQPNATN 265
Query: 77 PCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
PC I NGGC+ C P +C C KL+ G+ C
Sbjct: 266 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 5 TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED----SP 60
TG +++ + F T+ +Y+YWTD Q R + R K + + ++ +L D
Sbjct: 503 TGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV-IIDQLPDLMGLKA 561
Query: 61 RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
++H + NPC NGGC+ C P G C C +L+++ + C+
Sbjct: 562 TNVH------RVIGSNPCAEENGGCSHLCLYRPQGL-RCACPIGFELISDMKTCIV 610
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KECHDKY------RTCSSEEFACQN 310
+C P F C + CI W CD+D DC DGSDE + C Y CS+ EF C +
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 311 FKCIRKTYHCDGEDDCGDRSDEFNC 335
+CI ++ CDG DC D+SDE NC
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDEENC 90
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
N + CIP+ W CD DPDC DG+DE + S CS +F C +G CI++ W
Sbjct: 15 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 74
Query: 278 CDHDNDCGDGSDE 290
CD DC D SDE
Sbjct: 75 CDGGPDCKDKSDE 87
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 225 AQCIPKKWLCDGDPDCVDGADENTTAL 251
+CI W CDG PDC D +DE A+
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDEENCAV 92
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
V+ +PFAITV + +YWTD + + A K TG N E+++ P DIH
Sbjct: 283 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHTLHPQ 341
Query: 70 SQKCSVNPCNIHNGGCAQSCHP-GPNGTAECKCDESTKLVN 109
Q N C +NGGC C P G N T C C + +N
Sbjct: 342 RQPAGKNRCGDNNGGCTHLCLPSGQNYT--CACPTGFRKIN 380
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
CN++NGGCAQ C G +C C +L +GR C
Sbjct: 6 CNVNNGGCAQKCQM-IRGAVQCTCHTGYRLTEDGRTC 41
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
V+ +PFAITV + +YWTD + + A K TG N E+++ P DIH
Sbjct: 240 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHTLHPQ 298
Query: 70 SQKCSVNPCNIHNGGCAQSCHP-GPNGTAECKCDESTKLVN 109
Q N C +NGGC C P G N T C C + +N
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQNYT--CACPTGFRKIN 337
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGR 270
+ EF C + K CI ++++CD D DC+DG+DE + CP + C P F C +
Sbjct: 5 QAEFRCHDGK------CISRQFVCDSDRDCLDGSDEAS----CPVLT-CGPASFQCNSST 53
Query: 271 CINTGWLCDHDNDCGDGSDE 290
CI W CD+D DC DGSDE
Sbjct: 54 CIPQLWACDNDPDCEDGSDE 73
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
+CS +F C +G+CI+ ++CD D DC DGSDE TC F C + CI +
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC---PVLTCGPASFQCNSSTCIPQL 58
Query: 318 YHCDGEDDCGDRSDEF 333
+ CD + DC D SDE+
Sbjct: 59 WACDNDPDCEDGSDEW 74
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+TCS EF C + KCI + + CD + DC D SDE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF +T +++YIYWTD R + RA K +G N + L D DI V+ + S++ N
Sbjct: 209 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHS-SRQSGWN 266
Query: 77 PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C NG C+ C P G C C L + R C A
Sbjct: 267 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 5 TGASMVLI--SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRD 62
+GA+ +++ S + P +TV N++YW D Q + + + + TG V+ D
Sbjct: 507 SGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDM-TGREGRTKVQARIAQLSD 565
Query: 63 IH-VYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITC 121
IH V + Q+ +PC NGGC+ C +GT C C L+ + ++C
Sbjct: 566 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQD-------ELSC 618
Query: 122 DGSK 125
G+K
Sbjct: 619 GGTK 622
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF +T +++YIYWTD R + RA K +G N + L D DI V+ + S++ N
Sbjct: 207 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHS-SRQSGWN 264
Query: 77 PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C NG C+ C P G C C L + R C A
Sbjct: 265 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 304
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 5 TGASMVLI--SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRD 62
+GA+ +++ S + P +TV N++YW D Q + + + + TG V+ D
Sbjct: 505 SGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDM-TGREGRTKVQARIAQLSD 563
Query: 63 IH-VYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
IH V + Q+ +PC NGGC+ C +GT C C L+ + C
Sbjct: 564 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 616
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF +T +++YIYWTD R + RA K +G N + L D DI V+ + S++ N
Sbjct: 214 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHS-SRQSGWN 271
Query: 77 PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C NG C+ C P G C C L + R C A
Sbjct: 272 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 311
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 5 TGASMVLI--SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRD 62
+GA+ +++ S + P +TV N++YW D Q + + + + TG V+ D
Sbjct: 512 SGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDM-TGREGRTKVQARIAQLSD 570
Query: 63 IH-VYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
IH V + Q+ +PC NGGC+ C +GT C C L+ + C
Sbjct: 571 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF--KCIRK 316
C ++F C +G+CI+ W+CD +C DGSDE +E TC S +F+C +CI +
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNRCIPQ 66
Query: 317 TYHCDGEDDCGDRSDEFNC 335
+ CDG+ DC + SDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENT-TALNCPKQSSCSPDQFSCGN 268
E EF C + K CI KW+CDG +C DG+DE+ T L+ +C FSCG
Sbjct: 9 ERNEFQCQDGK------CISYKWVCDGSAECQDGSDESQETCLS----VTCKSGDFSCGG 58
Query: 269 --GRCINTGWLCDHDNDCGDGSDE 290
RCI W CD DC +GSDE
Sbjct: 59 RVNRCIPQFWRCDGQVDCDNGSDE 82
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 332 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 390
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
C + NGGC C P P + C C + L + R C+ +
Sbjct: 391 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 439
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 261 PDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KEC 294
P++F C +G CI +C+ DC D SDE KEC
Sbjct: 4 PNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 38
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 350
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
C + NGGC C P P + C C + L + R C+ +
Sbjct: 351 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 268
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCV 115
C + NGGC C P P + C C + L + R C+
Sbjct: 269 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 253 CPKQSSCSP--DQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQN 310
C Q + SP D F C NG+ I+ CD NDCGD SDE C + C + F C++
Sbjct: 196 CYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE--LC---CKACQGKGFHCKS 250
Query: 311 FKCIRKTYHCDGEDDCGDRSDEFNC 335
CI Y C+GE DC DE C
Sbjct: 251 GVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 226 QCIPKKWL-----CDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDH 280
QC+ K++ CDG DC D +DE L C +C F C +G CI + + C+
Sbjct: 210 QCVNGKYISQMKACDGINDCGDQSDE----LCC---KACQGKGFHCKSGVCIPSQYQCNG 262
Query: 281 DNDCGDGSDE 290
+ DC G DE
Sbjct: 263 EVDCITGEDE 272
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
+SC Q++C N +CI+ W+CD DNDCGDGSDE
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+C ++ C N +CI K + CD ++DCGD SDE NCN
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+T++TC + QCI K W+CD D DC DG+DE
Sbjct: 9 DTQYTC------DNHQCISKNWVCDTDNDCGDGSDE 38
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
SCS QF C +GRCI W CD DNDCGD SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+CSS +F C + +CI + + CDG++DCGD SDE + N
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQ 256
T+F C N +CIP+ W CDGD DC D +DE T NC Q
Sbjct: 8 TQFKC------NSGRCIPEHWTCDGDNDCGDYSDE--THANCTNQ 44
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
C P +F+C N RCI W CD DNDC D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C ++ CI ++W CDGD DC+D +DE
Sbjct: 10 EFACANSR------CIQERWKCDGDNDCLDNSDE 37
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 227 CIPKKWLCDGDPDCVDGADENTTA 250
C+P++WLCDGD DC DGADE+ A
Sbjct: 22 CVPERWLCDGDKDCADGADESIAA 45
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 258 SCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
+C P FSC G C+ WLCD D DC DG+DE
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 299 RTCSSEEFACQNFK-CIRKTYHCDGEDDCGDRSDE 332
+TC F+C C+ + + CDG+ DC D +DE
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 227 CIPKKWLCDGDPDCVDGADENTTA 250
C+P++WLCDGD DC DGADE+ A
Sbjct: 20 CVPERWLCDGDKDCADGADESIAA 43
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 258 SCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
+C P FSC G C+ WLCD D DC DG+DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 299 RTCSSEEFACQNFK-CIRKTYHCDGEDDCGDRSDE 332
+TC F+C C+ + + CDG+ DC D +DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
C DQF C N RCI + W CD D+DC D SDE
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+ C ++F C+N +CI + CD +DDC D SDE +C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK 255
E+ +F C + CIP W CD D DC+D +DE+ +CPK
Sbjct: 9 EKDQFQCRNER------CIPSVWRCDEDDDCLDHSDED----DCPK 44
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 252 NCPKQSSCSPDQFSCGN-GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSE 304
N P +S + F C GRC+N LC+ DNDCGD SDE C Y+ C E
Sbjct: 59 NRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN-CRRIYKKCQHE 111
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 304 EEFAC-QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
E F C Q +C+ + C+G++DCGD+SDE NC
Sbjct: 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 205 NRKCDEETE---FTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
NR C + F C + +C+ ++ LC+GD DC D +DE
Sbjct: 59 NRPCRSQVRCEGFVCAQT-----GRCVNRRLLCNGDNDCGDQSDE 98
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKE 293
C ++F C +G+CI+ W+CD +C DGSDE +E
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
E EF C + K CI KW+CDG +C DG+DE+
Sbjct: 9 ERNEFQCQDGK------CISYKWVCDGSAECQDGSDES 40
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
C EF CQ+ KCI + CDG +C D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 214 FTCTENKAWNRAQCIPKKW---LCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCG-NG 269
F C + K +R+ P K+ +C GD + +++ C +Q+ C D F C G
Sbjct: 21 FPCQDKKYRHRSLLQPNKFGGTICSGD---IWDQASCSSSTTCVRQAQCGQD-FQCKETG 76
Query: 270 RCINTGWLCDHDNDCGDGSDEGKECHD 296
RC+ +C+ D DC DGSDE +C D
Sbjct: 77 RCLKRHLVCNGDQDCLDGSDE-DDCED 102
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
CS +F C +G CI++ W CD DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 225 AQCIPKKWLCDGDPDCVDGADENTTA 250
+CI W CDG PDC D +DE A
Sbjct: 12 GECIHSSWRCDGGPDCKDKSDEENCA 37
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+F C+E +C P+ WLCDG PDC DG DE
Sbjct: 9 QFRCSEPPG-AHGECYPQDWLCDGHPDCDDGRDE 41
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 257 SSCSPDQFSC-----GNGRCINTGWLCDHDNDCGDGSDE 290
S C P QF C +G C WLCD DC DG DE
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+F C+E +C P+ WLCDG PDC DG DE
Sbjct: 11 QFRCSEPPG-AHGECYPQDWLCDGHPDCDDGRDE 43
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 257 SSCSPDQFSC-----GNGRCINTGWLCDHDNDCGDGSDE 290
SC P QF C +G C WLCD DC DG DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKE 293
+C P F C + CI W CD+D DC DGSDE +
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 36
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE 246
N + CIP+ W CD DPDC DG+DE
Sbjct: 10 NSSTCIPQLWACDNDPDCEDGSDE 33
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
TC F C + CI + + CD + DC D SDE+
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 34
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 301 CSSEEFACQNF-KCIRKTYHCDGEDDCGDRSDEFNC 335
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 305 EFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+F C + +CI + C+GE+DCGD SDE +C
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 262 DQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
++F C +GRCI C+ +NDCGD SDE
Sbjct: 121 NKFRCDSGRCIARKLECNGENDCGDNSDE 149
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
++C PD+F C +G CI+ CD + DC D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
TC +EF C + CI + CD E DC D SDE C
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
+C PD+F C +G CI+ CD + DC D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
TC +EF C + CI + CD E DC D SDE C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 227 CIPKKWLCDGDPDCVDGADENT 248
CIP +W CDGD DC+D +DE +
Sbjct: 17 CIPLRWRCDGDTDCMDSSDEKS 38
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 259 CSPDQFSCG-NGRCINTGWLCDHDNDCGDGSDE 290
C D+F C +G CI W CD D DC D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 301 CSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C ++EF C+ + CI + CDG+ DC D SDE +C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 301 CSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 259 CSPDQFSCGNGR-CINTGWLCDHDNDCGDGSDEG 291
C+ QF C +G CIN+ + CD DC D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 299 RTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
RTC E +C + +CI ++ CDGE+DC DE NC
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 225 AQCIPKKWLCDGDPDCVDGADE 246
QCIP W CDG+ DC G DE
Sbjct: 15 TQCIPVSWRCDGENDCDSGEDE 36
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 258 SCSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDE 290
+C + SCG + +CI W CD +NDC G DE
Sbjct: 2 TCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 225 AQCIPKKWLCDGDPDCVDGADE 246
QCIP W CDG+ DC G DE
Sbjct: 13 TQCIPVSWRCDGENDCDSGEDE 34
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 259 CSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDE 290
C + SCG + +CI W CD +NDC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 301 CSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
C E +C + +CI ++ CDGE+DC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 226 QCIPKKWLCDGDPDCVDGADE 246
+CIP+ W CDG DC +G+DE
Sbjct: 20 RCIPQFWRCDGQVDCDNGSDE 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 300 TCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNC 335
TC S +F+C +CI + + CDG+ DC + SDE C
Sbjct: 6 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 258 SCSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDE 290
+C FSCG RCI W CD DC +GSDE
Sbjct: 6 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 226 QCIPKKWLCDGDPDCVDGADENTTAL 251
QCI K ++CDG DC +G DE L
Sbjct: 68 QCISKLFVCDGHNDCRNGEDEKDCTL 93
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 258 SCSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDEGKEC 294
SC + CG + +CI+ ++CD NDC +G DE K+C
Sbjct: 54 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDC 91
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
CNI NG C Q C G + C C +L + + C
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 226 QCIPKKWLCDGDPDCVDGADEN 247
+CI CDG+ DC DG+DE+
Sbjct: 67 ECIHDLLFCDGEKDCRDGSDED 88
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
CNI NG C Q C G + C C +L + + C
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 261 PDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KEC 294
P++F C +G CI +C+ DC D SDE KEC
Sbjct: 9 PNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
CNI NG C Q C + C C E +L + C
Sbjct: 5 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 41
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
CNI NG C Q C + C C E +L + C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
C++ NG C Q CH N C C L + G+ C+
Sbjct: 84 CSLDNGDCDQFCHEEQNSVV-CSCARGYTLADNGKACI 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,127,692
Number of Sequences: 62578
Number of extensions: 479035
Number of successful extensions: 1188
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 233
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)