RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy954
(337 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 130 bits (327), Expect = 1e-33
Identities = 69/240 (28%), Positives = 97/240 (40%), Gaps = 62/240 (25%)
Query: 98 ECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
+ + + L G C+ ++F C++GKCIS W CDG +C D SDE C
Sbjct: 4 KLRWTVALLLAAAGTAV---GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 158 NVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCT 217
+ C +F+C
Sbjct: 61 L----------------------------------------------SVTCKSG-DFSCG 73
Query: 218 ENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
+CIP+ W CDG DC +G+DE CP +CS D+F C +G+CI+ ++
Sbjct: 74 GRVN----RCIPQFWRCDGQVDCDNGSDE----QGCP-PKTCSQDEFRCHDGKCISRQFV 124
Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
CD D DC DGSD E TC F C + CI + + CD + DC D SDE+
Sbjct: 125 CDSDRDCLDGSD---EASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 181
Score = 114 bits (287), Expect = 2e-28
Identities = 72/223 (32%), Positives = 87/223 (39%), Gaps = 63/223 (28%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
TC +F C +GKCISR + CD D DC D SDE C V G
Sbjct: 103 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCG-------------- 146
Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
F C + CIP+ W CD D
Sbjct: 147 ---------------------------------PASFQCNSS------TCIPQLWACDND 167
Query: 238 PDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK 292
PDC DG+DE + S CS +F C +G CI++ W CD DC D SDE
Sbjct: 168 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE- 226
Query: 293 ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+ TC +EF C + CI + CD E DC D SDE C
Sbjct: 227 --NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
Score = 113 bits (283), Expect = 8e-28
Identities = 76/280 (27%), Positives = 109/280 (38%), Gaps = 76/280 (27%)
Query: 67 SADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKF 126
+A +C N +G C +G+AEC+ + ++TC F
Sbjct: 18 TAVGDRCERNEFQCQDGKCISYKWVC-DGSAECQDGS------DESQETCLSVTCKSGDF 70
Query: 127 FCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQ 184
C +CI + W CDG DC + SDE
Sbjct: 71 SCGGRVNRCIPQFWRCDGQVDCDNGSDEQ------------------------------- 99
Query: 185 PPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGA 244
+ C ++ EF C + +CI ++++CD D DC+DG+
Sbjct: 100 -----------------GCPPKTCSQD-EFRCHDG------KCISRQFVCDSDRDCLDGS 135
Query: 245 DENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE-------GKECHDK 297
DE +CP +C P F C + CI W CD+D DC DGSDE
Sbjct: 136 DEA----SCP-VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 190
Query: 298 YRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 191 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV 230
Score = 91.1 bits (225), Expect = 3e-20
Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 25/233 (10%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
+TC + F C + CI ++W+CD D DC D SDE P C G
Sbjct: 142 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR-------GLYVFQGDSSPC 194
Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAW-NRAQCIPKKWLCDG 236
G + + G + + + TC ++ + CI CD
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDR 254
Query: 237 DPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKEC-- 294
+ DC D +DE P++F C +G CI +C+ DC D SDE +
Sbjct: 255 EYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 311
Query: 295 ------------HDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
H E C + + C+ D+C D
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 364
Score = 89.1 bits (220), Expect = 1e-19
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 232 WLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
W + A C ++F C +G+CI+ W+CD +C DGSDE
Sbjct: 3 WKLRWTVALLLAAAGTAVG------DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE- 55
Query: 292 KECHDKYRTCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCNY 337
+ TC S +F+C +CI + + CDG+ DC + SDE C
Sbjct: 56 SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPP 103
Score = 62.5 bits (151), Expect = 6e-11
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 604 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 662
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFC 128
C + NGGC C P P + C C + L + R C+ + ++
Sbjct: 663 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETS 722
Query: 129 RNGKCISRMWSCDGDDDCGDNSDEDPNY 156
+S D
Sbjct: 723 TVRLKVSSTAVRTQHTTTRPVPDTSRLP 750
Score = 62.2 bits (150), Expect = 9e-11
Identities = 35/226 (15%), Positives = 53/226 (23%), Gaps = 63/226 (27%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
TC +F C +G CI CD + DC D SDE
Sbjct: 230 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTL----------------- 272
Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
C+ +F C + +CI +C+
Sbjct: 273 ------------------------------CEGPNKFKC------HSGECITLDKVCNMA 296
Query: 238 PDCVDGADENTTALNCPK------QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
DC D +DE + S + G G+ C D +
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE-- 354
Query: 292 KECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
C D +KC + ++
Sbjct: 355 --CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 398
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 126 bits (318), Expect = 2e-32
Identities = 67/218 (30%), Positives = 93/218 (42%), Gaps = 59/218 (27%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
C+ ++F C++GKCIS W CDG +C D SDE C
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCL--------------------- 43
Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
+ C +F+C +CIP+ W CDG D
Sbjct: 44 -------------------------SVTCKSG-DFSC----GGRVNRCIPQFWRCDGQVD 73
Query: 240 CVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYR 299
C +G+DE CP ++ CS D+F C +G+CI+ ++CD D DC DGSDE
Sbjct: 74 CDNGSDE----QGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVL 125
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
TC F C + CI + + CD + DC D SDE+
Sbjct: 126 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 163
Score = 118 bits (296), Expect = 1e-29
Identities = 69/223 (30%), Positives = 84/223 (37%), Gaps = 63/223 (28%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
TC +F C +GKCISR + CD D DC D SDE
Sbjct: 85 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE------------------------- 119
Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
F C + CIP+ W CD D
Sbjct: 120 ------------------------ASCPVLTCGPASFQCNSS------TCIPQLWACDND 149
Query: 238 PDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK 292
PDC DG+DE + S CS +F C +G CI++ W CD DC D SD
Sbjct: 150 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSD--- 206
Query: 293 ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
E + TC +EF C + CI + CD E DC D SDE C
Sbjct: 207 EENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249
Score = 107 bits (269), Expect = 5e-26
Identities = 69/253 (27%), Positives = 98/253 (38%), Gaps = 75/253 (29%)
Query: 94 NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSD 151
+G+AEC+ + ++TC F C +CI + W CDG DC + SD
Sbjct: 26 DGSAECQDGS------DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD 79
Query: 152 EDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEE 211
E + C ++
Sbjct: 80 EQ------------------------------------------------GCPPKTCSQD 91
Query: 212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
EF C + +CI ++++CD D DC+DG+DE +C P F C + C
Sbjct: 92 -EFRCHD------GKCISRQFVCDSDRDCLDGSDEA-----SCPVLTCGPASFQCNSSTC 139
Query: 272 INTGWLCDHDNDCGDGSDE-------GKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 324
I W CD+D DC DGSDE CS+ EF C + +CI ++ CDG
Sbjct: 140 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 199
Query: 325 DCGDRSDEFNCNY 337
DC D+SDE NC
Sbjct: 200 DCKDKSDEENCAV 212
Score = 99.1 bits (246), Expect = 5e-23
Identities = 54/135 (40%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQF 264
+C E EF C + K CI KW+CDG +C DG+DE+ C F
Sbjct: 3 GDRC-ERNEFQCQDGK------CISYKWVCDGSAECQDGSDESQETCLSVT---CKSGDF 52
Query: 265 SCGN--GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDG 322
SCG RCI W CD DC +GSDE + C +TCS +EF C + KCI + + CD
Sbjct: 53 SCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGC--PPKTCSQDEFRCHDGKCISRQFVCDS 109
Query: 323 EDDCGDRSDEFNCNY 337
+ DC D SDE +C
Sbjct: 110 DRDCLDGSDEASCPV 124
Score = 86.4 bits (213), Expect = 9e-19
Identities = 59/288 (20%), Positives = 84/288 (29%), Gaps = 80/288 (27%)
Query: 69 DSQKCSVNPCNIHNGGCA-QSCHPGP---NGTAECK--CDESTKLVNEGRMCVAKNITCD 122
D C V C + C +C P + +C+ DE + + + C
Sbjct: 118 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCS 177
Query: 123 GSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGV 182
+F C +G+CI W CDG DC D SDE
Sbjct: 178 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE------------------------------ 207
Query: 183 SQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVD 242
EF C + CI CD + DC D
Sbjct: 208 -------------------ENCAVATCRPDEFQC------SDGNCIHGSRQCDREYDCKD 242
Query: 243 GADENTTALNC-PKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKEC------- 294
+DE + C P++F C +G CI +C+ DC D SDE +
Sbjct: 243 MSDE----VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECL 298
Query: 295 -------HDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
H E C + + C+ D+C D
Sbjct: 299 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 346
Score = 69.1 bits (168), Expect = 4e-13
Identities = 46/289 (15%), Positives = 77/289 (26%), Gaps = 77/289 (26%)
Query: 61 RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNIT 120
R ++V+ DS CS + +G C S +CD ++ T
Sbjct: 164 RGLYVFQGDSSPCSAFEFHCLSGECIHSSW---------RCDGGPDCKDKSDEENCAVAT 214
Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQIT 180
C +F C +G CI CD + DC D SDE
Sbjct: 215 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV--------------------------- 247
Query: 181 GVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDC 240
N C+ +F C + +CI +C+ DC
Sbjct: 248 --------------------GCVNVTLCEGPNKFKC------HSGECITLDKVCNMARDC 281
Query: 241 VDGADENTTALNCPKQSSCSP------------DQFSCGNGRCINTGWLCDHDNDCGDGS 288
D +DE + + + C +G + C+ ++C D
Sbjct: 282 RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD 341
Query: 289 DEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
+ C + C+ + N +
Sbjct: 342 TCSQLCV---NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 387
Score = 58.7 bits (141), Expect = 1e-09
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 586 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHQLTQPRGVN 644
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVA 116
C + NGGC C P P + C C + L + R C+
Sbjct: 645 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 104 bits (262), Expect = 2e-28
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
+C P+QFSC +GRCI W CD D+DCGD SDE +F C N +CI
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE-SASCAYPTCFPLTQFTCNNGRCININ 62
Query: 318 YHCDGEDDCGDRSDEFNCNY 337
+ CD ++DCGD SDE C++
Sbjct: 63 WRCDNDNDCGDNSDEAGCSH 82
Score = 86.2 bits (214), Expect = 2e-21
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
+F+C + CIP W CD D DC D +DE+ +C + QF+C NG
Sbjct: 6 PPNQFSCASGR------CIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLTQFTCNNG 56
Query: 270 RCINTGWLCDHDNDCGDGSDE 290
RCIN W CD+DNDCGD SDE
Sbjct: 57 RCININWRCDNDNDCGDNSDE 77
Score = 68.1 bits (167), Expect = 7e-15
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 53/127 (41%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
TC ++F C +G+CI W+CD DDDCGD SDE +
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA---------------------- 41
Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
C T+FTC +CI W CD D D
Sbjct: 42 -------------------------YPTCFPLTQFTCNNG------RCININWRCDNDND 70
Query: 240 CVDGADE 246
C D +DE
Sbjct: 71 CGDNSDE 77
Score = 53.1 bits (128), Expect = 1e-09
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
RTC +F+C + +CI ++ CD +DDCGDRSDE
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS 39
Score = 50.0 bits (120), Expect = 2e-08
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 114 CVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
A ++F C NG+CI+ W CD D+DCGDNSDE
Sbjct: 39 SCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 98.5 bits (246), Expect = 3e-26
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
+CS +F C +G+CI+ ++CD D DC DGSDE C TC F C + CI +
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCP--VLTCGPASFQCNSSTCIPQL 58
Query: 318 YHCDGEDDCGDRSDEFNCN 336
+ CD + DC D SDE+
Sbjct: 59 WACDNDPDCEDGSDEWPQR 77
Score = 84.3 bits (209), Expect = 8e-21
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFS 265
+ C + EF C + +CI ++++CD D DC+DG+DE +CP +C P F
Sbjct: 1 KTC-SQAEFRC------HDGKCISRQFVCDSDRDCLDGSDE----ASCPVL-TCGPASFQ 48
Query: 266 CGNGRCINTGWLCDHDNDCGDGSDE 290
C + CI W CD+D DC DGSDE
Sbjct: 49 CNSSTCIPQLWACDNDPDCEDGSDE 73
Score = 62.3 bits (152), Expect = 7e-13
Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 55/127 (43%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
TC ++F C +GKCISR + CD D DC D SDE C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA--SC---------------------- 37
Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
C F C + CIP+ W CD DPD
Sbjct: 38 ------------------------PVLTC-GPASFQCNSS------TCIPQLWACDNDPD 66
Query: 240 CVDGADE 246
C DG+DE
Sbjct: 67 CEDGSDE 73
Score = 55.4 bits (134), Expect = 2e-10
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
+TCS EF C + KCI + + CD + DC D SDE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 39
Score = 50.7 bits (122), Expect = 1e-08
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
+TC + F C + CI ++W+CD D DC D SDE P C
Sbjct: 39 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 93.4 bits (232), Expect = 4e-21
Identities = 41/128 (32%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 209 DEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN 268
E C + A+C K G D D K S D F C N
Sbjct: 161 TECLHVHCR-GLETSLAECTFTKRRTMGYQDFADVVCYT------QKADSPMDDFFQCVN 213
Query: 269 GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGD 328
G+ I+ CD NDCGD SDE C + C + F C++ CI Y C+GE DC
Sbjct: 214 GKYISQMKACDGINDCGDQSDE-LCC----KACQGKGFHCKSGVCIPSQYQCNGEVDCIT 268
Query: 329 RSDEFNCN 336
DE C
Sbjct: 269 GEDEVGCA 276
Score = 33.4 bits (76), Expect = 0.096
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQI 161
C G F C++G CI + C+G+ DC DE +
Sbjct: 240 ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASV 281
Score = 30.7 bits (69), Expect = 0.79
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 237 DPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHD 296
+ C+ + T L+C K F RCI +C C + C
Sbjct: 12 EKKCLA---KKYTHLSCDKV-------FCQPWQRCIEGTCVCKLPYQC--PKNGTAVCAT 59
Query: 297 KYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSD 331
R ++ +C+ C
Sbjct: 60 NRR-SFPTYCQQKSLECLHPGTKFLNNGTCTAEGK 93
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 82.9 bits (204), Expect = 1e-17
Identities = 25/108 (23%), Positives = 45/108 (41%)
Query: 9 MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
++ S + P +TV N++YW D Q + + + + ++ R+ V
Sbjct: 513 VLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKEL 572
Query: 69 DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
+ Q+ +PC NGGC+ C +GT C C L+ + C
Sbjct: 573 NLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Score = 56.7 bits (136), Expect = 5e-09
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
V+ +PF +T +++YIYWTD R + RA K +G N +++ D DI V+
Sbjct: 202 VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR-TIIQGHLDYVMDILVF-HS 259
Query: 70 SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITC 121
S++ N C NG C+ C P G C C L + R C A
Sbjct: 260 SRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFL 311
Score = 33.6 bits (76), Expect = 0.093
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 8 SMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDI-- 63
+ ++ A+ N IYWTD+ L+ + RA + G+ + +V+ D P +
Sbjct: 29 VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGLDYPEGMAV 87
Query: 64 -----HVYSADSQKCSVNPCNI 80
++Y AD+ + +
Sbjct: 88 DWLGKNLYWADTGTNRIEVSKL 109
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 76.3 bits (187), Expect = 8e-16
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PFA+T+ + +YWTD + K+TG + E+ + SP DIH +S Q + N
Sbjct: 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATN 268
Query: 77 PCNIHNGGCAQSCHPGPN-GTAECKCDESTKLVNEGRMCVAKN 118
PC I NGGC+ C P +C C KL+ G+ C N
Sbjct: 269 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311
Score = 32.7 bits (74), Expect = 0.15
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 10 VLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDI---- 63
+++ A+ IYW+D+ + R E + ++ +V SP +
Sbjct: 29 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88
Query: 64 ---HVYSADSQKCSVNPCNI 80
+Y DS+ + N+
Sbjct: 89 LGEKLYWTDSETNRIEVSNL 108
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 75.5 bits (185), Expect = 1e-15
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVN 268
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCV 115
C + NGGC C P P + C C + L + R C+
Sbjct: 269 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 29.6 bits (66), Expect = 1.6
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 1 MRIATGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED 58
M + LI A+ N IYW+DL R + + A+ + +
Sbjct: 15 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD-RAHGVSSYDTVIS 73
Query: 59 ----SPRDI-------HVYSADSQKCSVNPCNI 80
+P + ++Y DS +V+ +
Sbjct: 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 68.3 bits (166), Expect = 7e-13
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
++ + F T+ +Y+YWTD Q R + R K + + + + +
Sbjct: 516 LVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV--IIDQLPDLMGLKATNVH 573
Query: 70 SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
S NGGC+ C P G C C +L+++ + C+
Sbjct: 574 RVIGSNPCA-EENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCI 617
Score = 58.3 bits (140), Expect = 1e-09
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 11 LISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADS 70
+ + +PFA+T+ + +YWTD + K+TG + E+ + SP DIH +S
Sbjct: 209 VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQR 267
Query: 71 QKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN 130
Q + NPC I NGGC+ C P + + + C++
Sbjct: 268 QPNATNPCGIDNGGCSHLCLMSPVK-------------PFYQCACPTGVKLLENGKTCKD 314
Query: 131 GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPG 169
G + + D D +Q+ +
Sbjct: 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Score = 34.8 bits (79), Expect = 0.037
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 10 VLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDI---- 63
+++ A+ IYW+D+ + R E + ++ +V SP +
Sbjct: 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93
Query: 64 ---HVYSADSQKCSVNPCNIHNGGC 85
+Y DS+ + N+
Sbjct: 94 LGEKLYWTDSETNRIEVSNLDGSLR 118
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 67.5 bits (164), Expect = 1e-12
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 9 MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
V+ +PFAITV + +YWTD + + A K TG N + +L P DIH
Sbjct: 282 AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLH-FPMDIHTLHP 340
Query: 69 DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
Q N C +NGGC C P C C + +N C
Sbjct: 341 QRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKIN-SHACA 385
Score = 39.4 bits (91), Expect = 0.001
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV-----AKNITCDGSKFFCR 129
CN++NGGCAQ C +C C +L +GR C A+ C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGA-VQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 130 NGKCISRMWSCDGDDDCGDNSDEDPNYCN 158
+ D P
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVL 90
Score = 33.2 bits (75), Expect = 0.12
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 64 HVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDG 123
+ + D + C G C+Q C G +C C+ +L + R C A
Sbjct: 32 YRLTEDGRTCQDVNECAEEGYCSQGCTNSE-GAFQCWCEAGYELRPDRRSCKALGPEPVL 90
Query: 124 SKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ 160
+ + + S + ++ + +
Sbjct: 91 LFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR 127
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 59.6 bits (145), Expect = 3e-12
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 253 CPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
C DQF C N RCI + W CD D+DC D SDE
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 53.4 bits (129), Expect = 4e-10
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+ C ++F C+N +CI + CD +DDC D SDE +C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 51.9 bits (125), Expect = 1e-09
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
C+ +F CRN +CI +W CD DDDC D+SDED
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 41.5 bits (98), Expect = 7e-06
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK 255
E+ +F C + CIP W CD D DC+D +DE +CPK
Sbjct: 9 EKDQFQCRNER------CIPSVWRCDEDDDCLDHSDE----DDCPK 44
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 65.3 bits (158), Expect = 4e-12
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
V+ +PFAITV + +YWTD + + A K TG N + +L P DIH
Sbjct: 240 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTLHPQ 298
Query: 70 SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
Q N C +NGGC C P C C + +N +
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACAL 343
Score = 30.6 bits (68), Expect = 0.65
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKN 118
VN C G C+Q C +C C+ +L + R C A
Sbjct: 1 VNECA-EEGYCSQGCTNSEGAF-QCWCEAGYELRPDRRSCKALG 42
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 64.5 bits (156), Expect = 1e-11
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q VN
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 350
Query: 77 PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
C + NGGC C P P + C C + L + R C+ +
Sbjct: 351 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399
Score = 34.8 bits (79), Expect = 0.034
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCIS 135
N C +NGGC+ C+ G EC C + +LV + C+ C
Sbjct: 1 NECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQR--------RCEDIDECQDPDTCSQ 51
Query: 136 RMWSCDGDDDCGDNSD 151
+ +G C
Sbjct: 52 LCVNLEGGYKCQCEEG 67
Score = 31.4 bits (70), Expect = 0.43
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 69 DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFC 128
++C C+Q C G +C+C+E +L + C A
Sbjct: 33 AQRRCEDIDECQDPDTCSQLCVNLEGGY-KCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 91
Query: 129 RNGKCISRMWSCDGDDDCGDN 149
+ ++ S
Sbjct: 92 HEVRKMTLDRSEYTSLIPNLR 112
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 57.7 bits (140), Expect = 1e-11
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 256 QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK-ECHDK 297
SCS QF C +GRCI W CD DNDCGD SDE C ++
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 53.5 bits (129), Expect = 4e-10
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+CSS +F C + +CI + + CDG++DCGD SDE + N
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 53.1 bits (128), Expect = 6e-10
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ 160
+ +C ++F C +G+CI W+CDGD+DCGD SDE C Q
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 38.4 bits (90), Expect = 8e-05
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+ C T+F C + CIP+ W CDGD DC D +DE
Sbjct: 2 SHSC-SSTQFKCNSGR------CIPEHWTCDGDNDCGDYSDE 36
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 57.2 bits (139), Expect = 2e-11
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
CS +F C +G CI++ W CD DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 52.6 bits (127), Expect = 7e-10
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
C +F C +G+CI W CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 40.2 bits (95), Expect = 2e-05
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C +CI W CDG PDC D +DE
Sbjct: 3 SAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDE 33
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 56.9 bits (138), Expect = 2e-11
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
C P +F+C N RCI W CD DNDC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 55.4 bits (134), Expect = 9e-11
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ 160
C +F C N +CI W CDGD+DC DNSDE P C+
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45
Score = 52.7 bits (127), Expect = 9e-10
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 40.0 bits (94), Expect = 3e-05
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+ EF C ++ CI ++W CDGD DC+D +DE
Sbjct: 7 QPGEFACANSR------CIQERWKCDGDNDCLDNSDE 37
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 60.6 bits (147), Expect = 1e-10
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 10 VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
++ YPFA+T + +Y+TD + V + M + I + +
Sbjct: 203 KVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262
Query: 70 SQK 72
+
Sbjct: 263 CPQ 265
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 5 TGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRD 62
T A L + +YWTD+ + RA G ++++ SP
Sbjct: 25 TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA-SLHGGEPTTIIRQDLGSPEG 83
Query: 63 I-------HVYSADSQKCSVNPCNIHNGGC 85
I ++ DSQ + +
Sbjct: 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113
Score = 31.7 bits (72), Expect = 0.27
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 9 MVLISATI-YPFAITV--HRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDI-- 63
+L + P +T + + W D ++++ L P +
Sbjct: 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA-QPGRRKVLEGL-QYPFAVTS 216
Query: 64 ---HVYSADSQKCSVNPCNIHNGGCAQSCHPGPN 94
++Y D + SV ++ + HP
Sbjct: 217 YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250
Score = 27.5 bits (61), Expect = 5.6
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 10 VLISATI-YPFAITVH--RNYIYWTDLQLRG--VYRAEKHTGANMIEMVKRLEDSPRDI- 63
VL + P I R +YWTD + + G N + + P +
Sbjct: 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-DGTNRRILAQDNLGLPNGLT 173
Query: 64 ------HVYSADSQKCSVNPCNI 80
+ D+ N
Sbjct: 174 FDAFSSQLCWVDAGTHRAECLNP 196
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 54.9 bits (132), Expect = 4e-10
Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 257 SSCSPDQFSCGN-GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQN--FKC 313
+C P FSC C+ WLCD D DC DG+DE C +
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA-----GCLYNSTGSGSGSGST 61
Query: 314 IRKTYHCDGEDDCGD 328
Sbjct: 62 EELRVRLASHLRKLR 76
Score = 49.5 bits (118), Expect = 3e-08
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG- 269
+ F+C C+P++WLCDGD DC DGADE C + G+G
Sbjct: 11 PSSFSCP-----GTHVCVPERWLCDGDKDCADGADE----SIAA---GCLYNSTGSGSGS 58
Query: 270 -RCINTGWLCD 279
Sbjct: 59 GSTEELRVRLA 69
Score = 45.6 bits (108), Expect = 6e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 294 CHDKYRTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
+ +TC F+C C+ + + CDG+ DC D +DE
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 44
Score = 42.5 bits (100), Expect = 7e-06
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 114 CVAKNITCDGSKFFCRN-GKCISRMWSCDGDDDCGDNSDEDPNYC 157
+ TC S F C C+ W CDGD DC D +DE
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 56.8 bits (136), Expect = 1e-09
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 204 NNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQ 263
++ D+ E T + + + + L L P SC +
Sbjct: 3 HDEIIDKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDP---SCDEHE 59
Query: 264 FSCG--NGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI-RKTYHC 320
CG + +CI+ ++CD NDC +G DE K+C + C R+ H
Sbjct: 60 HQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCFDHCTKRRPEHM 118
Query: 321 DGEDDCGDRSDEF 333
+ + F
Sbjct: 119 TLAFESSSIAAFF 131
Score = 49.1 bits (116), Expect = 4e-07
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 276 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEF 333
D GS + + +C E C + +CI K + CDG +DC + DE
Sbjct: 30 DRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEK 89
Query: 334 NC 335
+C
Sbjct: 90 DC 91
Score = 40.2 bits (93), Expect = 3e-04
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 112 RMCVAKNITCDGSKFFC--RNGKCISRMWSCDGDDDCGDNSDE 152
R+ ++ +CD + C + +CIS+++ CDG +DC + DE
Sbjct: 46 RVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 56.4 bits (135), Expect = 1e-09
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 239 DCVDGADENTTALNCPKQSSCSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDEGKECHD 296
D E + + + C F CG CI+ +CD DC + DE +
Sbjct: 33 DPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD--- 89
Query: 297 KYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
C + N T+H C R D
Sbjct: 90 ---VCDTSVVKAGNVFSGTSTWH-----GCLAREDHVTR 120
Score = 56.1 bits (134), Expect = 2e-09
Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 29/140 (20%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
E+ F C N +CI +CDG DC + DE+ C GN
Sbjct: 54 EKRTFQCGGN----EQECISDLLVCDGHKDCHNAHDED--------PDVCDTSVVKAGNV 101
Query: 270 RCINTGWLCDHDNDCGDGSDEGKECHDK------------YRTCSSEEFACQNFKCIRKT 317
+ W + C D + E ++ + + +
Sbjct: 102 FSGTSTW-----HGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSS 156
Query: 318 YHCDGEDDCGDRSDEFNCNY 337
++ G + R
Sbjct: 157 FNAKGYYNFASRRLILLPTD 176
Score = 50.7 bits (120), Expect = 1e-07
Identities = 34/217 (15%), Positives = 56/217 (25%), Gaps = 35/217 (16%)
Query: 97 AECKCDESTKLVNEGRMCVAKNITCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDP 154
AE E + R+ + C+ F C +CIS + CDG DC + DEDP
Sbjct: 29 AEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 88
Query: 155 NYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEF 214
+ C +V H + D T
Sbjct: 89 DVC---------------------------DTSVVKAGNVFSGTSTWHGCLAREDHVTRI 121
Query: 215 TCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
T T +K G + ++ N + + +
Sbjct: 122 TITASKRRKFFTARIWLRALVESELERHGENVTSS-FNAKGYYNFASRRLILLPTDDH-- 178
Query: 275 GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF 311
DH + E + +R + C +
Sbjct: 179 ---DDHLAVVCSFNRGDNERAECHRVTEATLHQCADL 212
Score = 39.9 bits (92), Expect = 5e-04
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 281 DNDCGDGSDEGKECHDKYRTCSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
D + + + + C F C +CI CDG DC + DE
Sbjct: 33 DPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 90
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 56.1 bits (134), Expect = 2e-09
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 6/128 (4%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
+E E C + +CI CDG+ DC DG+DE+ + S
Sbjct: 55 DEHESECRGD----VPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWT 110
Query: 270 RCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDR 329
C + DH + ++ ++ + T G + G R
Sbjct: 111 SCEDLNP--DHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR 168
Query: 330 SDEFNCNY 337
Sbjct: 169 ELLLAPLK 176
Score = 54.9 bits (131), Expect = 5e-09
Identities = 24/110 (21%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 231 KWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN--GRCINTGWLCDHDNDCGDGS 288
K D D + + L ++ C + C CI+ CD + DC DGS
Sbjct: 29 KLTHDVDKKTIRQLKARISNL---EEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGS 85
Query: 289 DEGKEC--HDKYRTCSSEEFACQNFKCI-RKTYHCDGEDDCGDRSDEFNC 335
DE E + SS C H R F
Sbjct: 86 DEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPN 135
Score = 52.2 bits (124), Expect = 4e-08
Identities = 37/204 (18%), Positives = 56/204 (27%), Gaps = 24/204 (11%)
Query: 94 NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSD 151
T + +L + R+ + CD + CR +CI + CDG+ DC D SD
Sbjct: 29 KLTHDVDKKTIRQL--KARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSD 86
Query: 152 EDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEE 211
EDP C++ IT V L P +V T PN
Sbjct: 87 EDPETCSLNITHVGSSYTGLATWTSC----EDLNPDHAIVTITAAHRKSFFPNRVWLRAT 142
Query: 212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
+ E+ G + L P + C
Sbjct: 143 LSYELDEH------DHTVSTTQLRGFYNFGKRE-----LLLAPLKGQSEGYGVICDFNLG 191
Query: 272 INTGWLCDHD-----NDCGDGSDE 290
+ C C + +
Sbjct: 192 DDDHADCKIVVPSSLFVCAHFNAQ 215
Score = 44.9 bits (105), Expect = 1e-05
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 262 DQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHD-KYRTCSSEEFACQN--FKCIRKTY 318
D + HD D + + C E C+ +CI
Sbjct: 14 DYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLL 73
Query: 319 HCDGEDDCGDRSDEFNCN 336
CDGE DC D SDE
Sbjct: 74 FCDGEKDCRDGSDEDPET 91
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 51.1 bits (123), Expect = 2e-09
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 257 SSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
C D+F C +G CI W CD D DC D SDE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 48.0 bits (115), Expect = 3e-08
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 300 TCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C ++EF C+ + CI + CDG+ DC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 45.0 bits (107), Expect = 5e-07
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDED 153
C +F CR +G CI W CDGD DC D+SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 44.2 bits (105), Expect = 7e-07
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
EF C + CIP +W CDGD DC+D +DE +C
Sbjct: 5 HTDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDE----KSCE 40
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 49.2 bits (118), Expect = 1e-08
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 299 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 48.1 bits (115), Expect = 3e-08
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 258 SCSPDQFSCGNGR-CINTGWLCDHDNDCGDGSDE 290
+C+ QF C +G CIN+ + CD DC D SDE
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 44.2 bits (105), Expect = 8e-07
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 117 KNITCDGSKFFCRNGK-CISRMWSCDGDDDCGDNSDE 152
+ C ++F C +G CI+ + CDG DC DNSDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 41.9 bits (99), Expect = 5e-06
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK 255
+F C + + CI ++ CDG DC D +DE CP
Sbjct: 8 TSAQFKCA-----DGSSCINSRYRCDGVYDCRDNSDE----AGCPT 44
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 49.3 bits (118), Expect = 2e-08
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 257 SSCSPDQFSCGNG-RCINTGWLCDHDNDCGDGSDEGKEC 294
+C P FSC C+ WLCD D DC DG+DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 47.0 bits (112), Expect = 1e-07
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 299 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
+TC F+C C+ + + CDG+ DC D +DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 43.1 bits (102), Expect = 2e-06
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 120 TCDGSKFFCRNG-KCISRMWSCDGDDDCGDNSDEDP 154
TC S F C C+ W CDGD DC D +DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 41
Score = 40.4 bits (95), Expect = 2e-05
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+ F+C C+P++WLCDGD DC DGADE
Sbjct: 9 PSSFSCP-----GTHVCVPERWLCDGDKDCADGADE 39
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 47.5 bits (113), Expect = 6e-08
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 257 SSCSPDQFSCG-----NGRCINTGWLCDHDNDCGDGSDE 290
S C P QF C +G C WLCD DC DG DE
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 44.8 bits (106), Expect = 5e-07
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
+ +C +F C+E + +C P+ WLCDG PDC DG DE C
Sbjct: 2 SSRCPPG-QFRCSEPPGAH-GECYPQDWLCDGHPDCDDGRDE----WGCG 45
Score = 44.8 bits (106), Expect = 6e-07
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 300 TCSSEEFAC-----QNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C +F C + +C + + CDG DC D DE+ C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
Score = 41.3 bits (97), Expect = 1e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 118 NITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDE 152
+ C +F C +G+C + W CDG DC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 46.7 bits (111), Expect = 1e-07
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 255 KQSSCSPDQFSC-----GNGRCINTGWLCDHDNDCGDGSDE 290
+ SC P QF C +G C WLCD DC DG DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 44.4 bits (105), Expect = 8e-07
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 297 KYRTCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 335
++ +C +F C +C + + CDG DC D DE+ C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 43.6 bits (103), Expect = 2e-06
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+F C+E +C P+ WLCDG PDC DG DE
Sbjct: 11 QFRCSEPPG-AHGECYPQDWLCDGHPDCDDGRDE 43
Score = 40.2 bits (94), Expect = 2e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 115 VAKNITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDE 152
+++ +C +F C +G+C + W CDG DC D DE
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 46.2 bits (110), Expect = 2e-07
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 301 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNCN 336
C E +C +CI ++ CDGE+DC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 45.8 bits (109), Expect = 2e-07
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 259 CSPDQFSCGNG--RCINTGWLCDHDNDCGDGSDE 290
C + SCG +CI W CD +NDC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 39.3 bits (92), Expect = 4e-05
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
E +C + QCIP W CDG+ DC G DE
Sbjct: 5 EISCGAHST----QCIPVSWRCDGENDCDSGEDE 34
Score = 38.5 bits (90), Expect = 8e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 121 CDGSKFFCRNG--KCISRMWSCDGDDDCGDNSDE 152
C + C +CI W CDG++DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 45.5 bits (108), Expect = 3e-07
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 300 TCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 43.9 bits (104), Expect = 9e-07
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 258 SCSPDQFSCGNG-RCINTGWLCDHDNDCGDGSDE 290
CS F CGN +C+ C+ +DCG+ +DE
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 42.0 bits (99), Expect = 4e-06
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 116 AKNITCDGSKFFCRNG-KCISRMWSCDGDDDCGDNSDED 153
++++ C F C N KC+ ++ C+G DDCG+ +DED
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 35.8 bits (83), Expect = 7e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE 246
N +C+P+ C+G DC + ADE
Sbjct: 16 NITKCLPQLLHCNGVDDCGNQADE 39
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 39.8 bits (93), Expect = 6e-05
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
K C NGGC Q C C+C E L+ +G C
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)
Query: 209 DEETEFTCTENKAWNRAQCIPKKW---LCDGDP-DCVDGADENTTALNCPKQSSCSPDQF 264
+ F C + K +R+ P K+ +C GD D + T C +Q+ C D
Sbjct: 16 EWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTT----CVRQAQCGQDFQ 71
Query: 265 SCGNGRCINTGWLCDHDNDCGDGSDEGK-ECHDKYRTCSSEEFACQNFKCIRKTYHCDGE 323
GRC+ +C+ D DC DGSDE E S+ + Y+ +
Sbjct: 72 CKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQ 131
Query: 324 DDCGDRSDE 332
+D D
Sbjct: 132 EDAQSVYDA 140
Score = 39.2 bits (90), Expect = 0.001
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 257 SSCSPDQFSCGNGRCINT--GWLCD-HDNDCGDGSDEGKECHDKYRTCSSEEFAC-QNFK 312
C ++ + N G +C D S ++F C + +
Sbjct: 21 FPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQ---AQCGQDFQCKETGR 77
Query: 313 CIRKTYHCDGEDDCGDRSDEFNCN 336
C+++ C+G+ DC D SDE +C
Sbjct: 78 CLKRHLVCNGDQDCLDGSDEDDCE 101
Score = 33.0 bits (74), Expect = 0.12
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFS 265
R+ +F C E +C+ + +C+GD DC+DG+DE+ CS +
Sbjct: 62 RQAQCGQDFQCKET-----GRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPI 116
Query: 266 CGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTY 318
+ G+ D D + E + + Y
Sbjct: 117 P-GSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLY 168
Score = 31.5 bits (70), Expect = 0.42
Identities = 27/161 (16%), Positives = 41/161 (25%), Gaps = 9/161 (5%)
Query: 76 NPCNIHNGGCAQSCHPGPNGTAECK-CDESTKLVNEGRMCVAKNITCDGSKFFCR-NGKC 133
PC P G C + C G F C+ G+C
Sbjct: 21 FPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC--VRQAQCGQDFQCKETGRC 78
Query: 134 ISRMWSCDGDDDCGDNSDE-----DPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGI 188
+ R C+GD DC D SDE P + G+ +T
Sbjct: 79 LKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVY 138
Query: 189 VMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIP 229
Q + + R+ ++ + P
Sbjct: 139 DASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKP 179
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 38.5 bits (90), Expect = 1e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C NGGC Q C C+C E L+ +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 37.0 bits (86), Expect = 4e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
CNI NG C Q C + C C E +L + C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 40
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 40.6 bits (95), Expect = 5e-04
Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 1/86 (1%)
Query: 252 NCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF 311
+ C G C + + GDG DE + + T +SE N
Sbjct: 69 GDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNP 128
Query: 312 KCIRK-TYHCDGEDDCGDRSDEFNCN 336
C +S E
Sbjct: 129 ATFGSGEADCGLRPLFEKKSLEDKTE 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.002
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 35/61 (57%)
Query: 42 EKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGP----NGTA 97
EK +K+L+ S + +Y+ DS P T
Sbjct: 18 EKQA-------LKKLQAS---LKLYADDS---------------------APALAIKATM 46
Query: 98 E 98
E
Sbjct: 47 E 47
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 37.8 bits (87), Expect = 0.003
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANM 49
++ L I V Y+Y+TD Y +
Sbjct: 251 VKNDGTGFKELAKGEF--CNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 37.1 bits (86), Expect = 0.006
Identities = 8/91 (8%), Positives = 15/91 (16%), Gaps = 1/91 (1%)
Query: 227 CIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGD 286
+ D V C C ++ C C
Sbjct: 295 FYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNG 354
Query: 287 GSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
+ + + +C K
Sbjct: 355 SPTKILHGRGGIS-GYTLRLCKMDNECTTKI 384
Score = 34.8 bits (80), Expect = 0.034
Identities = 18/131 (13%), Positives = 28/131 (21%), Gaps = 15/131 (11%)
Query: 202 HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLC--DGDPDCVDGADENTTALNCPKQSSC 259
HP C T F+ K R C+ K A + +C
Sbjct: 233 HPG---CLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPV 289
Query: 260 SPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG---KECHDKYRTCSSEEFACQNFKCIRK 316
+ + + D K C + R C + C
Sbjct: 290 ------FCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVR-CQFFTYTPAQASCNEG 342
Query: 317 TYHCDGEDDCG 327
C +
Sbjct: 343 KGKCYLKLSSN 353
Score = 27.5 bits (61), Expect = 8.6
Identities = 18/134 (13%), Positives = 29/134 (21%), Gaps = 20/134 (14%)
Query: 68 ADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV------------ 115
S + + +G QSC T + E V
Sbjct: 264 LPSTRIKKSKAL--SGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLC 321
Query: 116 AKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPG 175
+ C + C C + S + I+G + L +
Sbjct: 322 TNAVRCQFFTYTPAQASCNEGKGKCYL-KLSSNGSPTKILHGRGGISGYT-----LRLCK 375
Query: 176 HVQITGVSQPPGIV 189
P IV
Sbjct: 376 MDNECTTKIKPRIV 389
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 32.7 bits (75), Expect = 0.013
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKN 118
C++ NG C Q CH N C C L + G+ C+
Sbjct: 4 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPTG 43
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 31.9 bits (73), Expect = 0.021
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C++ NGGC Q C + C C L ++ + CV+
Sbjct: 1 CSLDNGGCDQFCREERSE-VRCSCAHGYVLGDDSKSCVS 38
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural
genomics, protein structure initiative; HET: MSE; 1.65A
{Escherichia coli O6}
Length = 171
Score = 33.4 bits (76), Expect = 0.052
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 22 TVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSP 60
+Y W LR + EK + + M R+++ P
Sbjct: 5 NRIEHYHDW----LRDAHAMEKQAESMLESMASRIDNYP 39
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 34.5 bits (78), Expect = 0.061
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 67 SADSQKCSVNPCNIHN--------GGCAQSCH----------PGPNGTAECKCDESTKLV 108
++++C+ C I+ C P G C
Sbjct: 46 KQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQP 105
Query: 109 NEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCN 158
+KF C +G+CI+R C+G++DCGDNSDE
Sbjct: 106 CIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155
Score = 33.3 bits (75), Expect = 0.12
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 253 CPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQ 309
C + + ++F C +GRCI C+ +NDCGD SDE K
Sbjct: 112 CKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPS 168
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.1 bits (76), Expect = 0.11
Identities = 21/111 (18%), Positives = 29/111 (26%), Gaps = 19/111 (17%)
Query: 69 DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITC-----DG 123
C PC + G SC G C C EG C C DG
Sbjct: 4 GGSPCISQPC--LHNG---SCQDSIWGY-TCTCSPGY----EGSNCELAKNECHPERTDG 53
Query: 124 SKFFCRNGK----CISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGE 170
+ FC G+ C G+D + + + +
Sbjct: 54 CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQD 104
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 9/62 (14%)
Query: 277 LCDHDNDCGDGSDEGK-ECHDKY--RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
C H+ C D C Y C + C + + C + +
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT------DGCQHFCLPGQESY 65
Query: 334 NC 335
C
Sbjct: 66 TC 67
Score = 28.5 bits (64), Expect = 3.5
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 20/106 (18%)
Query: 226 QCIPKKWLCDGDPDCVDGADENTTALNCPKQS---SCSPDQFSC---GNGRCINTGWLCD 279
CI + C + C D T C +C + C C
Sbjct: 7 PCISQ--PCLHNGSCQDSIWGYTCT--CSPGYEGSNCELAKNECHPERTDGC-------- 54
Query: 280 HDNDCGDGSDEGK-ECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 324
+ C G + C YR + + +C +
Sbjct: 55 -QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas
campestris PV. campestris STR. ATCC 33913, structural
genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas
campestris PV}
Length = 166
Score = 32.2 bits (73), Expect = 0.12
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 22 TVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSP 60
+ W L+ Y EK M M R+E P
Sbjct: 2 QSRERLVKW----LQDAYAMEKEAETMMAAMASRIEHYP 36
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 33.0 bits (74), Expect = 0.15
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 83 GGCAQSCHPGPN-GTAECKCDESTKLVNE-----GRMCVAKNITCDGSKFFCRNGKCISR 136
G C C G +C+CD K + +C+ + +K C G+ +
Sbjct: 21 GSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRC--GEVRNE 78
Query: 137 MWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMV 191
+C +DC D NY V + + P +++
Sbjct: 79 ENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIF 133
Score = 29.5 bits (65), Expect = 1.8
Identities = 16/81 (19%), Positives = 20/81 (24%), Gaps = 17/81 (20%)
Query: 252 NCPKQSSCSPD----------QFSCGNGRC---INTGWLCDHDNDCGDGSDEGKECHDKY 298
C SSC D + C RC N C DC +C Y
Sbjct: 43 LCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDC----LSRGDCCTNY 98
Query: 299 RTCSSEEFACQNFKCIRKTYH 319
+ E + C
Sbjct: 99 QVVCKGESHWVDDDCEEIRVP 119
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 31.4 bits (70), Expect = 0.40
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 214 FTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCG-NGRCI 272
C + + P + G+P + N P +S + F C GRC+
Sbjct: 23 DPCQKKRYRYAYLLQPSQ--FHGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCV 80
Query: 273 NTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEF 306
N LC+ DNDCGD SDE + +
Sbjct: 81 NRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQ 114
Score = 29.1 bits (64), Expect = 2.3
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 89 CHPGPNGTAECK-CDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCG 147
P C D+ + R C ++ + G+C++R C+GD+DCG
Sbjct: 36 LQPSQFHGEPCNFSDKEVEDCVTNRPCRSQ--VRCEGFVCAQTGRCVNRRLLCNGDNDCG 93
Query: 148 DNSDEDP 154
D SDE
Sbjct: 94 DQSDEAN 100
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 28.8 bits (65), Expect = 1.2
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 73 CSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
+ NGGC Q C C+C E L+ +G C
Sbjct: 88 QLICVNE--NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 28.4 bits (64), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 73 CSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGR 112
N C +NGGC+ C+ EC C + +LV + R
Sbjct: 27 MGTNECLDNNGGCSYVCNDLK-IGYECLCPDGFQLVAQRR 65
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 9/87 (10%)
Query: 256 QSSCSPD-QFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI 314
+ C D + C C +D G E + +++C+
Sbjct: 62 TAVCQKDGSWDRPMPACSIVD--CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYT 119
Query: 315 RK----TYHC--DGEDDCGDRSDEFNC 335
K Y C DG
Sbjct: 120 MKVNDGKYVCEADGFWTSSKGEKSLPV 146
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105,
iron-binding, PSI, protein STR initiative; 1.40A
{Rhodopseudomonas palustris} SCOP: a.25.1.4
Length = 173
Score = 29.1 bits (65), Expect = 1.4
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 22 TVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSP 60
T+ ++ LR +Y AE+ + +M+++ +
Sbjct: 12 TMEDLLLHG----LRDIYYAEQQITKALPKMIEQATNRD 46
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 29.3 bits (66), Expect = 1.6
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 82 NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN 130
GC C PG + C C + +L + + CV + G +
Sbjct: 10 TDGCQHFCLPG-QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 57
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.5 bits (65), Expect = 2.0
Identities = 23/140 (16%), Positives = 33/140 (23%), Gaps = 14/140 (10%)
Query: 202 HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDG---DPDCVDGADENTTALN---CPK 255
C E C++ + +C+ C D CV+ C
Sbjct: 202 TAEGLCCHSECLGNCSQPD--DPTKCV----ACRNFYLDGRCVETCPPPYYHFQDWRCVN 255
Query: 256 QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIR 315
S C C N R H+N C G + C+ C K
Sbjct: 256 FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCP--KVCH 313
Query: 316 KTYHCDGEDDCGDRSDEFNC 335
D + C
Sbjct: 314 LLEGEKTIDSVTSAQELRGC 333
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 28.1 bits (63), Expect = 5.1
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 19/113 (16%)
Query: 137 MWSCDGDDDCGDNSDEDP--------NYCNVQITGVSQPPGELGVPGHVQITGVSQPPGI 188
+W+ D DD G + ++ ++ P E+ PG PG
Sbjct: 336 VWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPGQPSEPEHGPSPGQ 395
Query: 189 VMVMTTVQTGLMNHPNNRK----CDEET--EFTCTENKAWNRAQCIPKKWLCD 235
GL +P R C + +C ++ C
Sbjct: 396 DTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFS-----NSCKCCT 443
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 26.6 bits (58), Expect = 5.4
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 66 YSADSQKCSV--NPCNIHNGGCA--QSCHPGPNGTAECKC-DESTKLVNEGRMCVAKN 118
+ KC C +NGGCA C ECKC E ++ + EG C + +
Sbjct: 40 FKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFCSSSS 97
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.5 bits (61), Expect = 7.7
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 215 TCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
C + CI CDG + V + T + ++ C
Sbjct: 36 RCGTGADQGKKVCIVY-HRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVC 91
Score = 27.1 bits (60), Expect = 9.2
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 2/60 (3%)
Query: 252 NCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF 311
C G CI CD + + + C+++
Sbjct: 30 ALTALPRC-GTGADQGKKVCIVY-HRCDGVTNTVTPEEVINTTGEGIFDIRENANECESY 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.456
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,314,824
Number of extensions: 320419
Number of successful extensions: 1970
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 428
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)