RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy954
(337 letters)
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 57.6 bits (138), Expect = 3e-10
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQ 71
+PF++ V + ++WTD+ ++ A + TG+++ + + L SP D+ ++ +Q
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQ 263
Score = 40.3 bits (93), Expect = 2e-04
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 15/153 (9%)
Query: 1 MRIATGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED 58
M + LI A+ N IYW+DL R + + + +
Sbjct: 15 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74
Query: 59 ---SPRDIHV-------YSADSQKCSVNPCNIHNGGCAQSCHPG---PNGTAECKCDEST 105
+P + V Y DS +V+ + P
Sbjct: 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134
Query: 106 KLVNEGRMCVAKNITCDGSKFFCRNGKCISRMW 138
+ G K +G + + I
Sbjct: 135 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 52.0 bits (125), Expect = 5e-10
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+TCS EF C + KCI + + CD + DC D SDE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
Score = 50.9 bits (122), Expect = 1e-09
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
+CS +F C +G+CI+ ++CD D DC DGSDE
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34
Score = 47.4 bits (113), Expect = 2e-08
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
TC ++F C +GKCISR + CD D DC D SDE
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA 35
Score = 35.8 bits (83), Expect = 2e-04
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 11/49 (22%)
Query: 206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
+ C + EF C + +CI ++++CD D DC+DG+DE +CP
Sbjct: 1 KTCSQA-EFRCHDG------KCISRQFVCDSDRDCLDGSDE----ASCP 38
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 52.0 bits (125), Expect = 5e-10
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
++C PD+F C +G CI+ CD + DC D SDE
Sbjct: 1 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 49.7 bits (119), Expect = 3e-09
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
TC +EF C + CI + CD E DC D SDE C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 46.6 bits (111), Expect = 4e-08
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
TC +F C +G CI CD + DC D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 33.9 bits (78), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C++ CI CD + DC D +DE
Sbjct: 5 PDEFQCSDG------NCIHGSRQCDREYDCKDMSDE 34
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 52.1 bits (125), Expect = 5e-10
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
+TC + F C + CI ++W+CD D DC D SDE P C
Sbjct: 1 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39
Score = 50.9 bits (122), Expect = 1e-09
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKE 293
+C P F C + CI W CD+D DC DGSDE +
Sbjct: 2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37
Score = 47.8 bits (114), Expect = 2e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
TC F C + CI + + CD + DC D SDE+
Sbjct: 2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38
Score = 34.8 bits (80), Expect = 7e-04
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
F C + CIP+ W CD DPDC DG+DE
Sbjct: 5 PASFQCNSS------TCIPQLWACDNDPDCEDGSDEW 35
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 52.1 bits (125), Expect = 5e-10
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCN 158
C +F C N +CI W CDGD+DC DNSDE P C+
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 51.3 bits (123), Expect = 1e-09
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
C P +F+C N RCI W CD DNDC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 48.2 bits (115), Expect = 1e-08
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 34.4 bits (79), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C + +CI ++W CDGD DC+D +DE
Sbjct: 8 PGEFACANS------RCIQERWKCDGDNDCLDNSDE 37
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 56.4 bits (135), Expect = 9e-10
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSP 60
+ A ++ YPFA+T + +Y+TD + V + M +
Sbjct: 194 LNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253
Query: 61 RDIHVY 66
I +
Sbjct: 254 YGITIA 259
Score = 31.0 bits (69), Expect = 0.17
Identities = 20/148 (13%), Positives = 36/148 (24%), Gaps = 12/148 (8%)
Query: 5 TGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDS--- 59
T A L + +YWTD+ + RA H G + + L
Sbjct: 25 TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI 84
Query: 60 ---PRDIHVYSADSQKCSVNPCNIHNGGC---AQSCHPGPNGTAECKCDESTKLVNEGRM 113
++ DSQ + + + P G + + R
Sbjct: 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144
Query: 114 CVA-KNITCDGSKFFCRNGKCISRMWSC 140
+ DG+ +
Sbjct: 145 NPKIETSHMDGTNRRILAQDNLGLPNGL 172
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 50.5 bits (121), Expect = 2e-09
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 256 QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE-GKECHDK 297
SCS QF C +GRCI W CD DNDCGD SDE C ++
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 49.8 bits (119), Expect = 3e-09
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+CSS +F C + +CI + + CDG++DCGD SDE + N
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 49.0 bits (117), Expect = 6e-09
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
+ +C ++F C +G+CI W+CDGD+DCGD SDE C
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41
Score = 34.4 bits (79), Expect = 8e-04
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
+ C T+F C + CIP+ W CDGD DC D +DE
Sbjct: 2 SHSCSS-TQFKCNSGR------CIPEHWTCDGDNDCGDYSDET 37
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 50.2 bits (120), Expect = 3e-09
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 253 CPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
C ++F C +G+CI+ W+CD +C DGSDE
Sbjct: 2 SAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 47.9 bits (114), Expect = 2e-08
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
C+ ++F C++GKCIS W CDG +C D SDE C
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44
Score = 46.7 bits (111), Expect = 4e-08
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C EF CQ+ KCI + CDG +C D SDE
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43
Score = 33.6 bits (77), Expect = 0.002
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
EF C + +CI KW+CDG +C DG+DE+
Sbjct: 10 RNEFQCQDG------KCISYKWVCDGSAECQDGSDES 40
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 49.0 bits (117), Expect = 6e-09
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
CS +F C +G CI++ W CD DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 47.8 bits (114), Expect = 2e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 44.7 bits (106), Expect = 2e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
C +F C +G+CI W CDG DC D SDE+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE 34
Score = 33.9 bits (78), Expect = 0.001
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C +CI W CDG PDC D +DE
Sbjct: 4 AFEFHCLSG------ECIHSSWRCDGGPDCKDKSDE 33
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 47.5 bits (113), Expect = 2e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
P++F C +G CI +C+ DC D SDE
Sbjct: 7 EGPNKFKCHSGECITLDKVCNMARDCRDWSDE 38
Score = 47.5 bits (113), Expect = 2e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 120 TCDG-SKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
C+G +KF C +G+CI+ C+ DC D SDE C
Sbjct: 5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43
Score = 41.3 bits (97), Expect = 3e-06
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
+F C + +CI C+ DC D SDE
Sbjct: 7 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 42
Score = 38.6 bits (90), Expect = 3e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 204 NNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
N C+ +F C + CI +C+ DC D +DE
Sbjct: 2 NVTLCEGPNKFKCHSGE------CITLDKVCNMARDCRDWSDEP 39
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 46.0 bits (109), Expect = 8e-08
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 258 SCSPDQFSC--GNGRCINTGWLCDHDNDCGDGSDE 290
+C FSC RCI W CD DC +GSDE
Sbjct: 4 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38
Score = 44.8 bits (106), Expect = 2e-07
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 300 TCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
TC S +F+C + +CI + + CDG+ DC + SDE C
Sbjct: 4 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 42.5 bits (100), Expect = 1e-06
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 NITCDGSKFFC--RNGKCISRMWSCDGDDDCGDNSDE 152
++TC F C R +CI + W CDG DC + SDE
Sbjct: 2 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38
Score = 35.5 bits (82), Expect = 4e-04
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+F+C +CIP+ W CDG DC +G+DE
Sbjct: 7 SGDFSC----GGRVNRCIPQFWRCDGQVDCDNGSDE 38
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 45.2 bits (107), Expect = 1e-07
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 300 TCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
+C E C + +CI K + CDG +DC + DE +C
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
Score = 45.2 bits (107), Expect = 2e-07
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 258 SCSPDQFSC--GNGRCINTGWLCDHDNDCGDGSDE 290
SC + C + +CI+ ++CD NDC +G DE
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36
Score = 40.9 bits (96), Expect = 4e-06
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 120 TCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDE 152
+CD + C + +CIS+++ CDG +DC + DE
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36
Score = 35.2 bits (81), Expect = 5e-04
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
E E C + QCI K ++CDG DC +G DE
Sbjct: 5 EHEHQC----GGDDPQCISKLFVCDGHNDCRNGEDE 36
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 45.2 bits (107), Expect = 1e-07
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 257 SSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
C D+F C +G CI W CD D DC D SDE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 44.4 bits (105), Expect = 2e-07
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 299 RTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
C ++EF C+ + CI + CDG+ DC D SDE +C
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 40.9 bits (96), Expect = 4e-06
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDED 153
C +F CR +G CI W CDGD DC D+SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 36.3 bits (84), Expect = 2e-04
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
EF C + CIP +W CDGD DC+D +DE
Sbjct: 6 TDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDE 36
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 43.7 bits (103), Expect = 5e-07
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 300 TCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 335
+C +F C +C + + CDG DC D DE+ C
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 43.4 bits (102), Expect = 7e-07
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 258 SCSPDQFSCGN-----GRCINTGWLCDHDNDCGDGSDE 290
SC P QF C G C WLCD DC DG DE
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38
Score = 38.0 bits (88), Expect = 4e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 120 TCDGSKFFCRN-----GKCISRMWSCDGDDDCGDNSDE 152
+C +F C G+C + W CDG DC D DE
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38
Score = 37.2 bits (86), Expect = 9e-05
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
+F C+ +C P+ WLCDG PDC DG DE
Sbjct: 4 PGQFRCS-EPPGAHGECYPQDWLCDGHPDCDDGRDE 38
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 43.7 bits (103), Expect = 5e-07
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 120 TCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCN 158
CD + CR +CI + CDG+ DC D SDEDP C+
Sbjct: 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42
Score = 42.5 bits (100), Expect = 1e-06
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 259 CSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDE 290
C + C CI+ CD + DC DGSDE
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 36
Score = 39.8 bits (93), Expect = 1e-05
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 300 TCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCN 336
C E C+ +CI CDGE DC D SDE
Sbjct: 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
Score = 34.8 bits (80), Expect = 7e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
E E C + +CI CDG+ DC DG+DE+
Sbjct: 5 EHESEC----RGDVPECIHDLLFCDGEKDCRDGSDED 37
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 42.9 bits (101), Expect = 7e-07
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 259 CSPDQFSCGNG--RCINTGWLCDHDNDCGDGSDE 290
C + SCG +CI W CD +NDC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 42.5 bits (100), Expect = 1e-06
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 301 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNC 335
C E +C +CI ++ CDGE+DC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 38.3 bits (89), Expect = 4e-05
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 121 CDGSKFFCRNG--KCISRMWSCDGDDDCGDNSDED 153
C + C +CI W CDG++DC DE+
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
Score = 34.1 bits (78), Expect = 0.001
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
E +C + QCIP W CDG+ DC G DE
Sbjct: 3 IHEISC----GAHSTQCIPVSWRCDGENDCDSGEDE 34
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 42.2 bits (99), Expect = 2e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 121 CDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCN 158
C+ F C +CIS + CDG DC + DEDP+ C+
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 41
Score = 41.8 bits (98), Expect = 2e-06
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 259 CSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDE 290
C F CG CI+ +CD DC + DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35
Score = 38.7 bits (90), Expect = 3e-05
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 301 CSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCN 336
C F C +CI CDG DC + DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39
Score = 33.7 bits (77), Expect = 0.002
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
F C N +CI +CDG DC + DE+
Sbjct: 6 TFQC----GGNEQECISDLLVCDGHKDCHNAHDED 36
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.7 bits (85), Expect = 2e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C NGGC Q C C+C E L+ +G C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 35.9 bits (83), Expect = 3e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
CNI NG C Q C + C C E +L + C
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 41
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 31.7 bits (72), Expect = 0.011
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKN 118
C++ NG C Q CH N C C L + G+ C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSV-VCSCARGYTLADNGKACIPTG 42
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 31.3 bits (71), Expect = 0.012
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKN 118
C++ NGGC Q C C C L ++ + CV+
Sbjct: 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSCVSTE 40
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 31.1 bits (70), Expect = 0.017
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 76 NPCNIHNGGCAQSCHPGPN-----GTAECKCDESTKLVNEGRMCVA 116
+ NGGC C P P C C + L + R C+
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 50
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 29.4 bits (66), Expect = 0.074
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
C++ NGGC C C C KL ++ C
Sbjct: 2 CSLDNGGCTHYCLEEVGWR-RCSCAPGYKLGDDLLQCHP 39
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 28.9 bits (65), Expect = 0.080
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC 114
N C +NGGC+ C+ EC C + +LV R C
Sbjct: 2 TNECLDNNGGCSHVCNDLK-IGYECLCPDGFQLVA-QRRC 39
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 28.5 bits (62), Expect = 1.0
Identities = 7/109 (6%), Positives = 19/109 (17%), Gaps = 5/109 (4%)
Query: 64 HVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDG 123
H ++ P + + K++ +
Sbjct: 125 HSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLA 184
Query: 124 SKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELG 172
+ + + + +I V E G
Sbjct: 185 LGASKYLQEQRIDTLQLASVGN-----TPLMKFLHPEIVTVDPGYAEAG 228
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 25.5 bits (56), Expect = 1.2
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
++ C C+Q C G +C+C+E +L + C A
Sbjct: 1 IDECQ-DPDTCSQLCVNLE-GGYKCQCEEGFQLDPHTKACKA 40
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.6 bits (56), Expect = 1.2
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
VN C + +C P G+ C C +L CV
Sbjct: 3 VNECLDPTTCISGNCVNTP-GSYICDCPPDFELNPTRVGCV 42
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 25.2 bits (55), Expect = 2.0
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 75 VNPCNIHNG---GCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK 117
++ C + G C CH G C C L R C +
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHL-GGFYCSCRAGYVLHRNKRTCSEQ 45
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 24.4 bits (53), Expect = 3.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
+ + C+ C+ G C C L ++ + C
Sbjct: 4 TDFVDVPCSHFCNNFI-GGYFCSCPPEYFLHDDMKNCGV 41
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 24.1 bits (52), Expect = 4.8
Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 75 VNPCNIHNGG---CAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
V+ C G C CH G C C L C A
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYL-GGYYCSCRVGYILHQNKHTCSA 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.456
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,386,586
Number of extensions: 72109
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 188
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)