RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9540
(214 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 160 bits (406), Expect = 6e-47
Identities = 57/151 (37%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 51 IRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYI-IARRIR 106
+HP K+ EE+ + GD R PT+++LQNMP LD IKE LR++P + + R +
Sbjct: 289 AKHPEVQEKLREEIDEVIGDK--RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT 346
Query: 107 REIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG 166
++ I Y IPK ++ +YA+HRDP V+ NP++F+P+RFL E + + PF AG
Sbjct: 347 KDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAG 406
Query: 167 NRKCIAYKYAMLQMKIVISTVLRHFKILPSP 197
R C+ + A ++MK+ ++T+L++F++ P
Sbjct: 407 PRNCLGERLARMEMKLFLATLLQNFEVELPP 437
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 119 bits (301), Expect = 5e-32
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 77 ELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVY 136
+ P+L+ ++E LR+YPP + R ++++G Y IP ++ I A +RDP V+
Sbjct: 275 AEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVF 334
Query: 137 ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKIL 194
+PD+F+P+RF + PF G +C+ A L++K+ ++ +LR F +L
Sbjct: 335 PDPDEFDPERFN---------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLL 383
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 102 bits (257), Expect = 1e-25
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYP-PGYIIARRIRREIKIGDY 114
K EEL + R PT+E+++ + L RCI E +R+YP P +I R ++ G Y
Sbjct: 314 KAQEELDRVLQG---RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGY 370
Query: 115 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPK-----YNYQPFAAGNRK 169
+ IM +Y +HR P V+E ++F P+RF + G P + Y PF+ G RK
Sbjct: 371 KVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLD--GPVPNETNTDFRYIPFSGGPRK 428
Query: 170 CIAYKYAMLQMKIVISTVLRHFKI 193
C+ ++A+L+ + ++ +L+ +
Sbjct: 429 CVGDQFALLEAIVALAVLLQRLDL 452
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 102 bits (256), Expect = 2e-25
Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYD 115
K+ E+ + G + P+ + L + +L+ I E LR+YPP ++ R +IK+GD
Sbjct: 352 KVRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLH 408
Query: 116 IPKDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYK 174
IPK +I + A+H ++ ++ ++FNPDRF F P ++ PFAAG R CI
Sbjct: 409 IPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFA--PGRHFIPFAAGPRNCIGQA 466
Query: 175 YAMLQMKIVISTVLRHFKILPSPRYK 200
+AM++ KI+++ ++ F S Y+
Sbjct: 467 FAMMEAKIILAMLISKFSFTISDNYR 492
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 94.4 bits (235), Expect = 1e-22
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYII-ARRIRREIKIGDY 114
+++ E+ + GD++ T E+L N+P L+ E LR Y P ++ R + + +G Y
Sbjct: 298 RLYREIREVCGDER---VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGY 354
Query: 115 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYK 174
DIP I IY + D +ENP++++P+RFL EK+ Y F AG R C
Sbjct: 355 DIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSL 414
Query: 175 YAMLQMKIVISTVLRHF 191
AML + I+ +++ F
Sbjct: 415 QAMLIACMAIARLVQEF 431
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 81.0 bits (200), Expect = 6e-18
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 51 IRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRR 107
IRHP K EEL ++ G D R + +L + L IKE R++P + R+
Sbjct: 325 IRHPDILKKAQEELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAA 382
Query: 108 E-IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLP--EKFG---KYPKYNYQ 161
E +I Y IPK AT++ ++A+ RDP + +P +F PDRFLP E G K +
Sbjct: 383 EECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELI 442
Query: 162 PFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 214
PF AG R C + L+M +++ L H +T D L E LT
Sbjct: 443 PFGAGRRICAGLSWG-LRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLT 494
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 80.0 bits (197), Expect = 1e-17
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYD 115
K+ EE+ S+ GD R PT E+++ + R I E LR+YP ++ RR +G Y
Sbjct: 427 KLQEEVDSVLGD---RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYP 483
Query: 116 IPKDATIMNYIYAMHRDPNVYENPDQFNPDRFL---PEKFGKYPKYNYQPFAAGNRKCIA 172
I + I ++ +HR P +++ ++FNP+R+ P ++Y PF G RKC+
Sbjct: 484 IKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVG 543
Query: 173 YKYAMLQMKIVISTVLRHFKILPSP 197
+A + + + ++R F +P
Sbjct: 544 DMFASFENVVATAMLVRRFDFQLAP 568
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 79.4 bits (196), Expect = 2e-17
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG-YIIARRIRREIKIGD- 113
K + E+ S + + Q+ P IKE LR P + + R +I IG
Sbjct: 319 KAYNEIKSTVNGRNK--VLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGG 376
Query: 114 YDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAY 173
+ IPKDA I+ Y++ R+ +ENP+QF+P RFL + PF+ G R C+
Sbjct: 377 HFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQ 432
Query: 174 KYAMLQMKIVISTVLRHFKILPSPRYKTIDDLK 206
++A ++ + S ++ +FK+ K+ID K
Sbjct: 433 QFAQDELYLAFSNIILNFKL------KSIDGKK 459
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 79.4 bits (196), Expect = 2e-17
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 51 IRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIR- 106
+ HP K+ +EL ++ G + T + +P L +KE LR++ ++ +
Sbjct: 321 VNHPEIQKKLRDELDTVLGPGNQ--VTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNL 378
Query: 107 REIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPF 163
+ K+G YDIP ++ I+ + + +P +++NP++F P+RFL E+ N + PF
Sbjct: 379 EDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPF 438
Query: 164 AAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTID 203
G R C A+ + IV+ ++++F++LP P ID
Sbjct: 439 GVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKID 478
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 77.3 bits (190), Expect = 1e-16
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG-YIIARRIRREIKIGDY 114
K+ +E+ + GDD+E + E++ MP L + E LR +PP +++ + ++++G Y
Sbjct: 342 KLHDEIKAKTGDDQEEV-SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGY 400
Query: 115 DIPKDATIMNYIYA-MHRDPNVYENPDQFNPDRFLPEKFGK------YPKYNYQPFAAGN 167
IPK AT+ N++ A M RD +E P +F P+RFL G+ + PF G
Sbjct: 401 LIPKGATV-NFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGR 459
Query: 168 RKCIAYKYAMLQMKIVISTVLRHFK 192
R C AML ++ ++ ++R F+
Sbjct: 460 RICAGLGIAMLHLEYFVANMVREFE 484
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 75.6 bits (186), Expect = 5e-16
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 51 IRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCI-KEVLRMYPPG-YIIARRI 105
I++P KI EEL S+ G + R +L ++ L RC+ +E RM+P G ++I
Sbjct: 324 IKNPRVLRKIQEELDSVVG--RNRMVQESDLVHLNYL-RCVVRETFRMHPAGPFLIPHES 380
Query: 106 RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKY-----PKYNY 160
R I Y IP + + + R+ ++++ ++F P+R P + + P +
Sbjct: 381 LRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKI 440
Query: 161 QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSP--RYKTID 203
PF+AG RKC + + + ++ + F P R + ID
Sbjct: 441 LPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDID 485
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 72.6 bits (178), Expect = 6e-15
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 56 KIFEELHSIFGDDKERCPTFEE--LQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGD 113
++ +EL + G ++ EE L+ + L +KE LR++PP ++ + ++
Sbjct: 340 RVQQELADVVGLNR----RVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAG 395
Query: 114 YDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ--PFAAGNRKCI 171
Y IPK + +M +A+ RD N +E+PD F P RFL + +++ PF +G R C
Sbjct: 396 YFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCP 455
Query: 172 AYKYAMLQMKIVISTVLRHF 191
+ + + + ++ +L F
Sbjct: 456 GMQLGLYALDLAVAHLLHCF 475
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 70.9 bits (174), Expect = 2e-14
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 74 TFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 133
T ++++ M L + I E LR+ + R + ++++ Y IPK ++ + +H DP
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 134 NVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
VY NP +F+P R+ + + + PF G+R C A L+ IS L HF
Sbjct: 403 EVYPNPKEFDPSRW--DNYTPKA-GTFLPFGLGSRLCPGNDLAKLE----ISIFLHHF 453
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 70.3 bits (172), Expect = 3e-14
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
Query: 59 EELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE-IKIGDYDIP 117
EE+ + G + R +L +P L KE R +P + R+ + ++ Y IP
Sbjct: 328 EEMDQVIG--RNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIP 385
Query: 118 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKY-PKYN---YQPFAAGNRKCIAY 173
K+ + I+A+ RDP+V+ENP++F P+RFL EK K P+ N PF AG R C
Sbjct: 386 KNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGT 445
Query: 174 KYAMLQMKIVISTVLRHF 191
+ ++ ++ ++ T++ F
Sbjct: 446 RMGIVLVEYILGTLVHSF 463
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 69.7 bits (171), Expect = 4e-14
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
+HP I EE + G ++E +FEE++ M L + E +R++PP ++ +
Sbjct: 322 KHPEVASAIREEADRVMGPNQE-AASFEEMKEMHYLHAALYESMRLFPP-------VQFD 373
Query: 109 IKIGDYD--------IPKDATIMNYIYAMHRDPNVYENPD--QFNPDR------FLPEKF 152
K D + K + + YAM R ++ PD +F P+R F+PE
Sbjct: 374 SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIW-GPDCLEFKPERWLKNGVFVPENP 432
Query: 153 GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKI 193
KYP F AG R C+ + A+++MK V V+R F I
Sbjct: 433 FKYPV-----FQAGLRVCLGKEMALMEMKSVAVAVVRRFDI 468
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 65.5 bits (159), Expect = 1e-12
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDY 114
K +E+ ++ GD + + E++ N+P L IKE LR+ P ++ R + KIG Y
Sbjct: 324 KAQDEVRNVIGD--KGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGY 381
Query: 115 DIPKDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKC 170
DIP I +A+ RD + +NP++F P+RF+ E G K + PF +G R C
Sbjct: 382 DIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMC 441
Query: 171 IAYKYAMLQMKIVISTVLRHF 191
A + ++I + +L F
Sbjct: 442 PAMHLGIAMVEIPFANLLYKF 462
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 63.6 bits (154), Expect = 6e-12
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 69 KERCPTF---EELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDYDIPKDATIMN 124
KE+ TF ++++N+P +KE LR+ P +I R ++ KI YDIP T+
Sbjct: 335 KEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNV 394
Query: 125 YIYAMHRDPNVY-ENPDQFNPDRFLPEKFG-KYPKYNYQPFAAGNRKCIAYKYAMLQMKI 182
+A+ RD + NPD+F P+RFL ++ K Y + PF +G R C + +++
Sbjct: 395 NAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEV 454
Query: 183 VISTVLRHF 191
+ +L +F
Sbjct: 455 PYANLLLNF 463
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 58.7 bits (142), Expect = 3e-10
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 74 TFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 133
+E+ + M I E LR+ + R+ ++++ YDIP ++ I A+H D
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 134 NVYENPDQFNPDRFLPE-------KFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 186
++Y+ P FNP R+ N+ PF G R C + A L+M + I
Sbjct: 396 SLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHH 455
Query: 187 VLRHFK 192
++ +F
Sbjct: 456 LVLNFN 461
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 57.7 bits (139), Expect = 5e-10
Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 76 EELQNMPVLDRCIKEVLRMYPP-GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPN 134
E+L+ + L + E +R+YPP + + ++ + + ++ I+ IYA+ R +
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 135 VY-ENPDQFNPDRFLPEKFG--KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH- 190
V+ E+ F P+R++ + G P Y + F +G R C+ A+LQMKIV ++++
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNY 468
Query: 191 -FKILPSPRYKTIDD----LKYEMRVTLT 214
FK++ + + I +K+ ++VT+T
Sbjct: 469 DFKVIEGHKIEAIPSILLRMKHGLKVTVT 497
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 56.9 bits (137), Expect = 1e-09
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 59 EELHSIFGDDKE-RCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIP 117
EE +I D +E T+E+ + MP+ R I+E LR+ R +++ Y IP
Sbjct: 303 EEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIP 362
Query: 118 KDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN-YQPFAAGNRKCIAYKYA 176
K ++ +H +++ +P +F+P RF PK N + PF G C + A
Sbjct: 363 KGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVA-----PKPNTFMPFGNGTHSCPGNELA 417
Query: 177 MLQMKIVI 184
L++ ++I
Sbjct: 418 KLEISVLI 425
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 56.3 bits (136), Expect = 2e-09
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 81 MPVLDRCIKEVLRMYPPGYIIA---RRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYE 137
+P I E LRM G II R+ ++++I Y IPK ++ Y ++H D Y+
Sbjct: 314 LPFTQNVITETLRM---GNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYD 370
Query: 138 NPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
NP QFNP R+ EK ++ PF G R C A L+ S L H
Sbjct: 371 NPYQFNPWRW-QEKDMN--NSSFTPFGGGQRLCPGLDLARLE----ASIFLHHL 417
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 55.0 bits (132), Expect = 5e-09
Identities = 31/128 (24%), Positives = 58/128 (45%)
Query: 75 FEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPN 134
+ + ++MP + E LR+ I RR +I++ Y IPK + A+H D
Sbjct: 323 WSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHE 382
Query: 135 VYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKIL 194
+++ FNP R+ P + PF G R C Y+ A + + + + ++ F +
Sbjct: 383 YFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWV 442
Query: 195 PSPRYKTI 202
P+ + K +
Sbjct: 443 PAEQDKLV 450
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 54.9 bits (133), Expect = 6e-09
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 74 TFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKI----GDYDIPKDATIMNYIYAM 129
TF L+ MP++ + E LR+ PP R R + I ++I K + Y +
Sbjct: 326 TFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLV 385
Query: 130 HRDPNVYENPDQFNPDRFL 148
RDP V++ P++F PDRF+
Sbjct: 386 TRDPKVFDRPEEFVPDRFM 404
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 54.0 bits (130), Expect = 1e-08
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 37/186 (19%)
Query: 56 KIFEELHSIFGDDKERCP-------------------TFEELQNMPVLDRCIKEVLRMYP 96
K++ EL + ++ + T++ L + L I E LR+YP
Sbjct: 328 KLYSELKA-LEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYP 386
Query: 97 -----PGYIIARRIRREIKIGDYDIPKDATIMNYI-YAMHRDPNVY-ENPDQFNPDRFLP 149
P I+ + + D K ++ Y+ Y+M R + + F P+R++
Sbjct: 387 AVPQDPKGILEDDV-----LPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIK 441
Query: 150 EK-FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYE 208
+ F + + F AG R C+ A LQMK+ ++ + R FK P + +KY
Sbjct: 442 DGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH----PVKYR 497
Query: 209 MRVTLT 214
M L+
Sbjct: 498 MMTILS 503
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 53.5 bits (128), Expect = 2e-08
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG-YIIARRIRREIKIGDY 114
K +EL + G K+R ++ N+ L C +E R++P Y+ R++ +G Y
Sbjct: 350 KALKELDEVVG--KDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGY 407
Query: 115 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFL------PEKFGKYPKYNYQPFAAGNR 168
IPK + I + R+P ++++P + P+R L E + + F+ G R
Sbjct: 408 FIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRR 467
Query: 169 KCIAYKYAMLQMKIVISTVLRHF 191
C+ K + M ++++ L+ F
Sbjct: 468 GCVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 44.6 bits (105), Expect = 2e-05
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYP-PGYIIARRIRREIKIGDY 114
K EE+ + G KER ++ + + I+E R++P + + + + Y
Sbjct: 363 KAMEEIDRVVG--KERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGY 420
Query: 115 DIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYN---YQPFAAGNRKCI 171
IPK + ++ Y + R+P V+ +P F P+R L E N + F+ G R C
Sbjct: 421 HIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCA 480
Query: 172 AYKYAMLQMKIVISTVLRHFK 192
A ++++ +L+ FK
Sbjct: 481 APALGTAITTMMLARLLQGFK 501
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 41.3 bits (97), Expect = 2e-04
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 74 TFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 133
+ + ++M I E R+ + R+ +++++ Y IPK I Y ++ DP
Sbjct: 319 DWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDP 378
Query: 134 NVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+Y +P FNP R+L + + + F G R C + +++ IST L +F
Sbjct: 379 FLYPDPMTFNPWRWLDKSLESHNYFFL--FGGGTRLCPGKELGIVE----ISTFLHYF 430
>gnl|CDD|111311 pfam02404, SCF, Stem cell factor. Stem cell factor (SCF) is a
homodimer involved in hematopoiesis. SCF binds to and
activates the SCF receptor (SCFR), a receptor tyrosine
kinase. The crystal structure of human SCF has been
resolved and a potential receptor-binding site
identified.
Length = 273
Score = 28.3 bits (63), Expect = 2.9
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 128 AMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKI---VI 184
A ++ ++ E+ RF PE F F NR A+K + + V+
Sbjct: 116 AEDKNKDIKESGKLPEERRFTPENF----------FRIFNRSIDAFKDFAVALDTSDCVM 165
Query: 185 STVL 188
S+ L
Sbjct: 166 SSTL 169
>gnl|CDD|234168 TIGR03328, salvage_mtnB, methylthioribulose-1-phosphate
dehydratase. Members of this family are the
methylthioribulose-1-phosphate dehydratase of the
methionine salvage pathway. This pathway allows
methylthioadenosine, left over from polyamine
biosynthesis, to be recycled to methionine [Amino acid
biosynthesis, Aspartate family].
Length = 193
Score = 28.0 bits (63), Expect = 3.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 73 PTFEELQNMPVLDRCIKEVLRMYP--PGYIIAR 103
P FE Q++ L + L YP PG +I
Sbjct: 128 PIFENTQDIARLADSVAPYLEAYPDVPGVLIRG 160
>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional.
Length = 134
Score = 26.4 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 11/39 (28%)
Query: 74 TFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIG 112
T EELQ M ++E + P R RR +K G
Sbjct: 13 TLEELQEMS-----LEEFAELLPA------RQRRSLKRG 40
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 26.7 bits (59), Expect = 9.8
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 64 IFGDDKERCPTFEELQNMPVLDRCIKEVLRMYP 96
+ G + ++ + N+P L+ + +L M+P
Sbjct: 292 VIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFP 324
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.143 0.449
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,571,087
Number of extensions: 1125971
Number of successful extensions: 1270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 40
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.5 bits)