RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9540
(214 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 193 bits (494), Expect = 4e-60
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
R P ++ E+ + G + FE+L + L + +KE LR+YPP + R + E
Sbjct: 272 RQPEIVARLQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEE 329
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNR 168
I +P + ++ Y M R +E+P FNPDRF P P++ Y PF+ G+R
Sbjct: 330 TLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHR 387
Query: 169 KCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
CI ++A +++K+V++ +L+ + P + + TL
Sbjct: 388 SCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQ----RFGLQEQATL 428
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 190 bits (484), Expect = 1e-58
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
HP +I +E+ ++ G R FE+++ + I E +R+ P +++ RR E
Sbjct: 292 DHPEHADRIRDEVEAVTGG---RPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAE 348
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNR 168
++G Y IP A I+ YA+ RDP Y++ +F+PDR+LPE+ PKY +PF+AG R
Sbjct: 349 SELGGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKR 408
Query: 169 KCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
KC + ++M Q+ ++ + + ++ + + +TL
Sbjct: 409 KCPSDHFSMAQLTLITAALATKYRFEQVAGS----NDAVRVGITL 449
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 186 bits (475), Expect = 3e-57
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
R K + E ++ G++ T+++L+++ +LDRCIKE LR+ PP I+ R R
Sbjct: 281 RDKTLQKKCYLEQKTVCGENLPP-LTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTP 339
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNR 168
+ Y IP + R + + FNPDR+L + K+ Y PF AG
Sbjct: 340 QTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRH 399
Query: 169 KCIAYKYAMLQMKIVISTVLRHFKILPSPRY 199
+CI +A +Q+K + ST+LR ++ Y
Sbjct: 400 RCIGENFAYVQIKTIWSTMLRLYEFDLIDGY 430
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 182 bits (464), Expect = 2e-55
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYD 115
I +E+ ++ G+ R +++Q + V++ I E +R P ++ R+ + I Y
Sbjct: 331 AIIKEIQTVIGE---RDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGYP 387
Query: 116 IPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKY 175
+ K I+ I MHR + P++F + F P +QPF G R C
Sbjct: 388 VKKGTNIILNIGRMHR-LEFFPKPNEFTLENFAKNV----PYRYFQPFGFGPRGCAGKYI 442
Query: 176 AMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
AM+ MK ++ T+LR F + + ++ ++ ++L
Sbjct: 443 AMVMMKAILVTLLRRFHVKTLQG-QCVESIQKIHDLSL 479
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 180 bits (459), Expect = 5e-55
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
RH + +EL ++GD + +F L+ +P L+ +KE LR++PP I+ R + E
Sbjct: 274 RHRDAYAAVIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGE 331
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGN 167
++ + I + + +R P + +P F P R+ + ++ + PF AG
Sbjct: 332 FEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGR 391
Query: 168 RKCIAYKYAMLQMKIVISTVLRHFKI-LPSPRYKTIDD 204
+C+ +A++Q+K + S +LR ++ + P +D
Sbjct: 392 HRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRND 429
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 175 bits (445), Expect = 6e-53
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 51 IRHPCKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIK 110
++H + +E+ + MP +RC +E +R PP ++ R++ ++K
Sbjct: 286 VKHLEALRKEIEEFPAQL----NYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVK 341
Query: 111 IGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKC 170
+G Y +PK I H D + P +++P+R + + F AG KC
Sbjct: 342 VGSYVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERDEK------VEGAFIGFGAGVHKC 395
Query: 171 IAYKYAMLQMKIVISTVLRHFKILPSPRY 199
I K+ +LQ+K +++T R +
Sbjct: 396 IGQKFGLLQVKTILATAFRSYDFQLLRDE 424
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 170 bits (433), Expect = 5e-51
Identities = 38/167 (22%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 52 RHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
++P K EE + D P++++++ + + + E LR++P + + +
Sbjct: 282 KNPHVLQKAAEEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKED 338
Query: 109 IKI-GDYDIPKDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAG 166
+ G+Y + K +M I +HRD ++ ++ ++F P+RF P++ ++PF G
Sbjct: 339 TVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNG 396
Query: 167 NRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
R CI ++A+ + +V+ +L+HF Y+ L + +TL
Sbjct: 397 QRACIGQQFALHEATLVLGMMLKHFDFEDHTNYE----LDIKETLTL 439
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 165 bits (420), Expect = 2e-49
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 52 RHPC---KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRRE 108
+H ++ +E + + + T E L+ MP LD+ ++EVLR+ PP R + ++
Sbjct: 272 QHSDIRERVRQEQNKLQLS---QELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQD 328
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGN 167
+ + PK + I H DP++Y +P++F+P+RF P+ P + + PF G
Sbjct: 329 CQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGL 388
Query: 168 RKCIAYKYAMLQMKIVISTVLRHFKILPSPRYK 200
R+C+ ++A L+MK+ + +++ F P
Sbjct: 389 RECLGKEFARLEMKLFATRLIQQFDWTLLPGQN 421
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 163 bits (414), Expect = 3e-48
Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 51 IRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRR 107
R+P ++ +E+ S+ D+ + P E+L+NMP L C+KE +R+ P R + +
Sbjct: 311 SRNPQAQRRLLQEVQSVLPDN--QTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDK 368
Query: 108 EIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGN 167
+G+Y +PK + + + +E+ +F P+R+L ++ P + + PF G
Sbjct: 369 PTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKINP-FAHLPFGIGK 427
Query: 168 RKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 214
R CI + A LQ+ + + +++ + I+ + + ++ L
Sbjct: 428 RMCIGRRLAELQLHLALCWIIQKYDIVATDN----EPVEMLHLGILV 470
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 160 bits (408), Expect = 3e-47
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
Query: 51 IRHPC---KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRR 107
R+ + E+ + + LQ +P+L IKE LR++P + R +
Sbjct: 303 ARNLKVQDMLRAEVLAARHQAQG--DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVN 360
Query: 108 EIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGN 167
++ + DY IP + IYA+ R+P + +P+ F+P R+L + + F G
Sbjct: 361 DLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKNITY-FRNLGFGWGV 419
Query: 168 RKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 214
R+C+ + A L+M I + +L +F++ D+ + L
Sbjct: 420 RQCLGRRIAELEMTIFLINMLENFRVEIQHL----SDVGTTFNLILM 462
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 160 bits (405), Expect = 5e-47
Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 18/171 (10%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKI---- 111
++ EE+ + T E ++ MP+ + E LR+ PP + + I
Sbjct: 302 QLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHD 361
Query: 112 GDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAG----- 166
+++ K + Y +DP V++ P+++ PDRF+ + G+ Y ++ G
Sbjct: 362 ATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGD--GEAL-LKYVWWSNGPETES 418
Query: 167 ----NRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
N++C + +L ++ + + R + L + +T
Sbjct: 419 PTVENKQCAGKDFVVLITRLFVIELFRRYDSFEIE--LGESPLGAAVTLTF 467
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 159 bits (403), Expect = 1e-46
Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 14/169 (8%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGD-- 113
++ EE+ S+ + T ++ M + + E LR PP R ++++ I
Sbjct: 320 RLAEEIRSVIKSNGGE-LTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHD 378
Query: 114 --YDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPF-------A 164
+ + + Y RDP +++ D+F P+RF+ E+ K ++
Sbjct: 379 AAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPT 438
Query: 165 AGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
GN++C + +L ++ + + R + L + +
Sbjct: 439 VGNKQCAGKDFVVLVARLFVIEIFRRYDSFDIE--VGTSPLGSSVNFSS 485
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 153 bits (388), Expect = 4e-45
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 87 CIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDR 146
+E LR+YPP +I+ RR+ R + +G+ +P T++ Y R + + + F P+R
Sbjct: 257 AFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLH--FPDGEAFRPER 314
Query: 147 FLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDL- 205
FL E+ P Y PF G R C+ +A+L+ IV+ R F++ P P + + +
Sbjct: 315 FLEER--GTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVT 372
Query: 206 ---KYEMRVTLT 214
+ +
Sbjct: 373 LRPEGGLPARPR 384
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 155 bits (393), Expect = 5e-45
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 56 KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYD 115
K+ EE+ ++ + PT++ + M LD + E LR++P + R +++++I
Sbjct: 308 KLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMF 365
Query: 116 IPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKY 175
IPK +M YA+HRDP + P++F P+RF + Y Y PF +G R CI ++
Sbjct: 366 IPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRF 425
Query: 176 AMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTLT 214
A++ MK+ + VL++F P +T LK + L
Sbjct: 426 ALMNMKLALIRVLQNFSFKPCK--ETQIPLKLSLGGLLQ 462
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 153 bits (389), Expect = 2e-44
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 51 IRHPC---KIFEELHSIFGDD--------KERCPTFEELQNMPVLDRCIKEVLRMYPPGY 99
IR+P EE+ + C + EL ++PVLD IKE LR+
Sbjct: 285 IRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASL 344
Query: 100 IIARRIRREIKI----GDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE----- 150
I R + + + G Y+I KD I Y MH DP +Y +P F DR+L E
Sbjct: 345 NI-RTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTK 403
Query: 151 ----KFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKI-LPSPRYKTIDDL 205
G KY Y PF +G C +A+ ++K + +L +F++ L + K L
Sbjct: 404 TTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAK-CPPL 462
Query: 206 KYEMRVTLT 214
Sbjct: 463 DQSRAGLGI 471
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 142 bits (359), Expect = 1e-40
Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 76 EELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNV 135
+Q + ++EV R YP + R ++ + P+ ++ +Y + D
Sbjct: 266 ALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAAT 325
Query: 136 YENPDQFNPDRFLPEKFGKYPKYNYQPFAAG----NRKCIAYKYAMLQMKIVISTVLRHF 191
+ +P +F P+RF +N+ P G +C + MK+ ++
Sbjct: 326 WADPQEFRPERFRAWDE---DSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAM 382
Query: 192 KI-LPSPR 198
+ +P
Sbjct: 383 RYDVPDQD 390
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 141 bits (357), Expect = 6e-40
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 24/187 (12%)
Query: 51 IRHPC---KIFEELHSIFGDDKERCP-----TFEELQNMPVLDRCIKEVLRMYPPGYIIA 102
+++P + EL SI ++ + L + PVLD + E LR+ I
Sbjct: 290 LKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAP-FIT 348
Query: 103 RRIRREIKI-----GDYDIPKDATIMNY-IYAMHRDPNVYENPDQFNPDRFLPE------ 150
R + ++ + ++++ + ++ + + RDP +Y +P+ F +RFL
Sbjct: 349 REVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKK 408
Query: 151 ---KFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKY 207
K GK K P+ AG+ C+ YA+ +K + VL H + I +
Sbjct: 409 DFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDL 468
Query: 208 EMRVTLT 214
Sbjct: 469 SRYGFGL 475
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 136 bits (345), Expect = 1e-38
Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 79 QNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYEN 138
N + ++EV R YP G + ++++ + + K +++ +Y + DP ++++
Sbjct: 271 GNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDH 330
Query: 139 PDQFNPDRFLPEKFGKYPKYNYQPFAAG----NRKCIAYKYAMLQMKIVISTVLRHFKIL 194
PD+F P+RF + ++ P G +C + MK + ++ +
Sbjct: 331 PDEFRPERFAEREE---NLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYD 387
Query: 195 PSPRYKTID 203
+
Sbjct: 388 VPEQSLHYS 396
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 132 bits (333), Expect = 2e-36
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 24/161 (14%)
Query: 51 IRHPC---KIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRR 107
+ HP + EE+ + E +N PV D + E LR+ I R + +
Sbjct: 281 LTHPEALRAVREEI-----QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALIT-RDVTQ 334
Query: 108 EIKI-----GDYDIPKDATIM-NYIYAMHRDPNVYENPDQFNPDRFLPE---------KF 152
+ KI +Y + + + + DP +++ P+ F DRFL K
Sbjct: 335 DKKICLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKN 394
Query: 153 GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKI 193
G KY P+ + C +A+ +K ++ T+L F +
Sbjct: 395 GARVKYPSVPWGTEDNLCPGRHFAVHAIKELVFTILTRFDV 435
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 110 bits (278), Expect = 1e-28
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 16/182 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
++ + + R+P ++ EL + G D R P + N+P + + E +R
Sbjct: 298 ALQWLLLLFTRYPDVQTRVQAELDQVVGRD--RLPCMGDQPNLPYVLAFLYEAMRF---S 352
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KF 152
I + Y IPKD + ++++ DP + NP+ F+P RFL +
Sbjct: 353 SFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLI 412
Query: 153 GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVT 212
K F+ G R+CI + + +Q+ + IS + +P + + +T
Sbjct: 413 NKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANP--NEPAKMNFSYGLT 470
Query: 213 LT 214
+
Sbjct: 471 IK 472
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 109 bits (274), Expect = 5e-28
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKE-RCPTFEELQNMPVLDRCIKEVLRMYPP 97
T + V + HP ++ EEL G T+++ +P+L+ I EVLR+
Sbjct: 298 TLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRL--- 354
Query: 98 GYI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG 153
+ + R R I YDIP+ ++ + H D V+E P +F PDRFL
Sbjct: 355 RPVVPLALPHRTTRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPG-- 412
Query: 154 KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTID-DLKYEMRVT 212
+ F G R C+ A L++ +V++ +L+ F +LP P V
Sbjct: 413 --ANPSALAFGCGARVCLGESLARLELFVVLARLLQAFTLLPPPVGALPSLQPDPYCGVN 470
Query: 213 LT 214
L
Sbjct: 471 LK 472
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 104 bits (261), Expect = 2e-26
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
++ + + +P K++EE+ G R PT + + +L+ I+EVLR+
Sbjct: 292 VVKWTLAFLLHNPQVKKKLYEEIDQNVGFS--RTPTISDRNRLLLLEATIREVLRL---R 346
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KF 152
+ I + + IG++ + K ++ ++A+H + + PDQF P+RFL
Sbjct: 347 PVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQ 406
Query: 153 GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVT 212
P +Y PF AG R CI A ++ ++++ +L+ F + + L+ +V
Sbjct: 407 LISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLP-SLEGIPKVV 465
Query: 213 LT 214
Sbjct: 466 FL 467
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 104 bits (261), Expect = 3e-26
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
T R+G+ + +++P K+ EE+ + G R P ++ Q MP +D + E+ R
Sbjct: 286 TLRYGLLILMKYPEIEEKLHEEIDRVIGPS--RIPAIKDRQEMPYMDAVVHEIQRF---I 340
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
+ + R+ Y IPK ++ + ++ D + +P++F P+ FL E GK
Sbjct: 341 TLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNEN-GK 399
Query: 155 YPKYNY-QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
+ +Y +PF+ G R C A +++ +++ +L+HF + P K ID +
Sbjct: 400 FKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGC 459
Query: 214 T 214
Sbjct: 460 I 460
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 104 bits (261), Expect = 3e-26
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
T +G+ + I HP ++ +E+ + G R P + +MP I EV R G
Sbjct: 291 TLAWGLLLMILHPDVQRRVQQEIDDVIGQV--RRPEMGDQAHMPYTTAVIHEVQRF---G 345
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
I + R+I++ + IPK T++ + ++ +D V+E P +F+P+ FL + G
Sbjct: 346 DIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQ-GH 404
Query: 155 YPKYN-YQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
+ K + PF+AG R C+ A +++ + +++L+HF +
Sbjct: 405 FVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRP-SHHGVFAFLV 463
Query: 214 T 214
+
Sbjct: 464 S 464
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 103 bits (260), Expect = 3e-26
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 14/170 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
T R+G + ++HP K+ EE+ + G + R P FE+ MP ++ I E+ R G
Sbjct: 287 TLRYGFLLLMKHPEVEAKVHEEIDRVIGKN--RQPKFEDRAKMPYMEAVIHEIQRF---G 341
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
+ +ARR++++ K D+ +PK + + ++ RDP+ + NP FNP FL EK G+
Sbjct: 342 DVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEK-GQ 400
Query: 155 YPKYNY-QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTID 203
+ K + PF+ G R C A +++ + +TV+++F++ S K ID
Sbjct: 401 FKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDID 450
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 103 bits (259), Expect = 5e-26
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
R+ + +P ++ +E+ I G + P++++ MP + + EVLR
Sbjct: 292 VLRWAILFMALYPNIQGQVQKEIDLIMGPN--GKPSWDDKCKMPYTEAVLHEVLRF---C 346
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
I I + + Y IPK T++ +Y++H D + +P+ F+P+RFL G
Sbjct: 347 NIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSS-GY 405
Query: 155 YPK-YNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
+ K PF+ G R C+ A ++M + + +L+ F + + + DLK + +TL
Sbjct: 406 FAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPH--ELVPDLKPRLGMTL 463
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 103 bits (258), Expect = 7e-26
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
T R+ + + ++HP K+ EE+ + G + R P ++ +MP D + EV R
Sbjct: 288 TLRYALLLLLKHPEVTAKVQEEIERVIGRN--RSPCMQDRSHMPYTDAVVHEVQRY---I 342
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
+ + + +IK +Y IPK TI+ + ++ D + NP+ F+P FL E G
Sbjct: 343 DLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEG-GN 401
Query: 155 YPKYNY-QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRVTL 213
+ K Y PF+AG R C+ A +++ + ++++L++F + K +D
Sbjct: 402 FKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFAS 461
Query: 214 T 214
Sbjct: 462 V 462
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 102 bits (257), Expect = 1e-25
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 17/183 (9%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
+ + + P KI +EL ++ G + R P + +P L+ I E R
Sbjct: 301 AISWSLMYLVTKPEIQRKIQKELDTVIGRE--RRPRLSDRPQLPYLEAFILETFRH---S 355
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPE--KF 152
I R+ + + IPK + + ++ DP ++E+P +F P+RFL
Sbjct: 356 SFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTA 415
Query: 153 GKYPK-YNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDDLKYEMRV 211
P F G R+CI A ++ + ++ +L+ + P K DL +
Sbjct: 416 INKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKV--DLTPIYGL 473
Query: 212 TLT 214
T+
Sbjct: 474 TMK 476
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 99 bits (250), Expect = 8e-25
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 42 TTRFGVNMSIRHP---CKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPPG 98
T R+G + +++P ++ +E+ + G R P ++ MP D I E+ R+ G
Sbjct: 287 TLRYGFLLMLKYPHVTERVQKEIEQVIGSH--RPPALDDRAKMPYTDAVIHEIQRL---G 341
Query: 99 YI----IARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK 154
+ + + ++ + Y IPK+ + + + DP +E P+ FNP FL G
Sbjct: 342 DLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDAN-GA 400
Query: 155 YPKYNY-QPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTID 203
+ PF+ G R C+ A ++ + +T+L++F I + ID
Sbjct: 401 LKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDID 450
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 65.4 bits (160), Expect = 9e-13
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
I E LR PP +I R++ ++ +G +I KD + I A +RDP +E PD FN R
Sbjct: 306 IAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHRE 365
Query: 148 LPEKFGKYPKYNYQ-PFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ F +G C+ +A +++IV + VL
Sbjct: 366 DLGIKSAFSGAARHLAFGSGIHNCVGTAFAKNEIEIVANIVLDKM 410
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 61.9 bits (151), Expect = 1e-11
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 24/142 (16%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
I E++RM PP R +++IG I + I I A +RDP V+++PD F+
Sbjct: 266 RAAIINEMVRMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANRDPEVFDDPDVFD 325
Query: 144 PDRFLPEKFGKYPKYNYQ-PFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTI 202
R P + F G C + + V + + + R +
Sbjct: 326 HTR--------PPAASRNLSFGLGPHSCAGQIISRAEATTVFAVLAERY-----ERIELA 372
Query: 203 DDLKY----------EMRVTLT 214
++ ++ + L+
Sbjct: 373 EEPTVAHNDFARRYRKLPIVLS 394
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 59.9 bits (146), Expect = 5e-11
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
+ ++E LR P + AR +I I I + + + A +RDP+++ NPD F+
Sbjct: 267 IGTAVEECLRYESPTQMTARVASEDIDICGVTIRQGEQVYLLLGAANRDPSIFTNPDVFD 326
Query: 144 PDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
R P F G+ C+ A L+ +I I+T+L+
Sbjct: 327 ITR--------------SPNPHLSFGHGHHVCLGSSLARLEAQIAINTLLQRM 365
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 59.6 bits (145), Expect = 7e-11
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
I+E +R PP +++R ++ IG + +PK T++ + A HRDP + PD+F+
Sbjct: 289 ASAVIEETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHRDPTIVGAPDRFD 348
Query: 144 PDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
PDR G F G C+ A L+ + + + F
Sbjct: 349 PDRAQIRHLG---------FGKGAHFCLGAPLARLEATVALPALAARF 387
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 59.2 bits (144), Expect = 1e-10
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
++EVLR PP + R + ++ IP D + ++ + +RD + +++PD+F+P R
Sbjct: 278 VEEVLRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANRDSDAHDDPDRFDPSR- 336
Query: 148 LPEKFGKYPKYNYQP---FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
K F G C+ A L+ ++ + ++ F
Sbjct: 337 ---------KSGGAAQLSFGHGVHFCLGAPLARLENRVALEEIIARF 374
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 58.9 bits (143), Expect = 1e-10
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
R + EVLR++P ++ R E+++G++ I + ++ + A +RDP V+ PD+ +
Sbjct: 255 AQRTVAEVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANRDPEVFAEPDRLD 314
Query: 144 PDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
DR ++ A + + +
Sbjct: 315 VDRPDADRAL---------SAHRGHPGRLEELVTALATAALRAAAKAL 353
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 58.8 bits (143), Expect = 2e-10
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 23/120 (19%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
L + ++E LR P R++ ++++ + +D ++ A +RDP Y+ PD F+
Sbjct: 266 LAQAVEECLRYDPSVQSNTRQLDVDVELRGRRLRRDDVVVVLAGAANRDPRRYDRPDDFD 325
Query: 144 PDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPR 198
+R P F AG R C+ A Q++ ++ + R LP R
Sbjct: 326 IER--------------DPVPSMSFGAGMRYCLGSYLARTQLRAAVAALAR----LPGLR 367
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 58.4 bits (142), Expect = 2e-10
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 73 PTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRD 132
++ ++ + + I+E LR PP R+ + +K+GD I + + +I + +RD
Sbjct: 229 NLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRD 288
Query: 133 PNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
V+ + ++F PDR F +G C+ A L+ +I I + F
Sbjct: 289 EEVFHDGEKFIPDRNPNPHLS---------FGSGIHLCLGAPLARLEARIAIEEFSKRF 338
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 58.0 bits (141), Expect = 3e-10
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
+ ++E+LR I R + +I++G I ++ I M+RD YENPD F+
Sbjct: 276 VSGVVEELLRFTSVSDHIVRMAKEDIEVGGATIKAGDAVLVSITLMNRDAKAYENPDIFD 335
Query: 144 PDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
R + FG G +C+ A +++I + +
Sbjct: 336 ARR--NARHHVGFG-----------HGIHQCLGQNLARAELEIALGGLFARI 374
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 57.2 bits (139), Expect = 5e-10
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++E+ R + + +R + ++ IGD + + I+ + +RD V+ENPD+F
Sbjct: 273 APQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEF 332
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
N +R P + FG G+ +CIA A ++ V ST+ + F
Sbjct: 333 NMNRKWPPQDPLGFG-----------FGDHRCIAEHLAKAELTTVFSTLYQKF 374
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 57.3 bits (139), Expect = 5e-10
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
++E++R PP + R +I++GD+DIP+ + ++ + + +RDP + +PD +
Sbjct: 287 TPAAVEELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRVVALLGSANRDPARFPDPDVLD 346
Query: 144 PDR 146
R
Sbjct: 347 VHR 349
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 56.4 bits (137), Expect = 7e-10
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 73 PTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRD 132
+++ ++ L + ++E LR PP R + ++KI D I + + +I + +RD
Sbjct: 230 NSWDYVREKGAL-KAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRD 288
Query: 133 PNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
V+++PD F PDR F +G C+ A L+ +I + + F
Sbjct: 289 EEVFKDPDSFIPDRTPNPHLS---------FGSGIHLCLGAPLARLEARIALEEFAKKF 338
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 56.5 bits (137), Expect = 8e-10
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 23/121 (19%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++E+LR I R+ +I++ I ++ +RD VYE+PD
Sbjct: 277 VPGAVEELLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIANRDGTVYEDPDAL 336
Query: 143 NPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSP 197
+ R F G +C+ A L+++++++ ++ P+
Sbjct: 337 DIHR--------------SARHHLAFGFGVHQCLGQNLARLELEVILNALMDRV---PTL 379
Query: 198 R 198
R
Sbjct: 380 R 380
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 56.5 bits (137), Expect = 9e-10
Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ + E+LR+ I R+ +I++ +P D ++ + + DP +++P++
Sbjct: 282 MPAAVDELLRVLSVADSIPLRVAAEDIELSGRTVPADDGVIALLAGANHDPEQFDDPERV 341
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R + FG G +C+ A L++++ + T+LR
Sbjct: 342 DFHR--TDNHHVAFG-----------YGVHQCVGQHLARLELEVALETLLRRV 381
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 56.5 bits (137), Expect = 9e-10
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
R + E++R Y RI R ++ + +I K +++ + A +RDP + + D+
Sbjct: 269 AQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRL 328
Query: 143 NPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R F G C+ A L+++ V + + R F
Sbjct: 329 DVTREPIPHVA---------FGHGVHHCLGAALARLELRTVFTELWRRF 368
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 56.1 bits (136), Expect = 1e-09
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRRE-IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++E+LR+ R+ I++GD + K ++ + + DP + NP
Sbjct: 266 IPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSI 325
Query: 143 NPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
DR P FG G C +I I +L+
Sbjct: 326 ELDRPNPTSHLAFG-----------RGQHFCPGSALGRRHAQIGIEALLKKM 366
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
L ++E+LR P R E++IG IP+ +T++ A +RDP + +P +F+
Sbjct: 274 LPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFD 333
Query: 144 PDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
R F G C+ A L+ ++ + + F
Sbjct: 334 VTRDTRGHLS---------FGQGIHFCMGRPLAKLEGEVALRALFGRF 372
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 55.7 bits (135), Expect = 2e-09
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRRE-IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
++E+LR + + R+ E ++IG I ++ + + + DP V+++P
Sbjct: 278 TPMAVEELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGVIVSMLSANWDPAVFKDPAVL 337
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ +R + FG G +C+ A ++++IV T+ R
Sbjct: 338 DVER--GARHHLAFG-----------FGPHQCLGQNLARMELQIVFDTLFRRI 377
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 55.7 bits (135), Expect = 2e-09
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
I+E+LR P + R + + + + +M + + D V+ P++F+ R
Sbjct: 267 IEEMLRWTAPVKNMCRVLTADTEFHGTALCAGEKMMLLFESANFDEAVFCEPEKFDVQRN 326
Query: 148 LPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
F G C+ + A L++ ++ VLR
Sbjct: 327 PNSHLA---------FGFGTHFCLGNQLARLELSLMTERVLRRL 361
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 55.7 bits (135), Expect = 2e-09
Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
+E +R P R R++++ I + ++ ++ + +RDP +++PD+++
Sbjct: 284 ARNAFEEAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLMFLGSANRDPRRWDDPDRYD 343
Query: 144 PDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTID 203
R G F +G C+ A L+ ++V++ + R +
Sbjct: 344 ITRKTSGHVG---------FGSGVHMCVGQLVARLEGEVVLAALARKV-----AAIEIAG 389
Query: 204 DLKY----------EMRVTLT 214
LK + + LT
Sbjct: 390 PLKRRFNNTLRGLESLPIQLT 410
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 55.3 bits (134), Expect = 2e-09
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++E+LR G R+ R++++G I K ++ ++ A DP E P++F
Sbjct: 270 VGNAVEELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERF 329
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R FG G +CI + A ++++IV T+ R
Sbjct: 330 DITR--RPAPHLAFG-----------FGAHQCIGQQLARIELQIVFETLFRRL 369
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 55.0 bits (133), Expect = 3e-09
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 35/156 (22%)
Query: 75 FEELQNMPVL-DRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 133
L++ D ++EVLR P + R ++ I D+P ++ ++ A +RDP
Sbjct: 277 LTALRDGSADVDTVVEEVLRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAANRDP 336
Query: 134 NVYENPDQFNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVL 188
+++PD F P R +P F G C+ A +++ +V+ +
Sbjct: 337 AEFDDPDTFLPGR--------------KPNRHITFGHGMHHCLGSALARIELSVVLRVLA 382
Query: 189 RHFKILPSPRYKTIDDLKY----------EMRVTLT 214
R + + E+ V T
Sbjct: 383 ERV-----SRVDLEREPAWLRAIVVQGYRELPVRFT 413
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 54.5 bits (132), Expect = 3e-09
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 88 IKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDR 146
++E LR Y P + R + I + I K ++ Y+ + +RD ++ PD F R
Sbjct: 222 VEETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDETFFDEPDLFKIGR 281
Query: 147 FLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
E FG C+ A L+ I ++ +L HF
Sbjct: 282 --REMHLAFGIGIHM-----------CLGAPLARLEASIALNDILNHF 316
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 54.6 bits (132), Expect = 3e-09
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ + EVLR I R R++++ I K + I + RD V+ PD F
Sbjct: 287 MRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVF 346
Query: 143 NPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R + G C A L+ +I + T+ R F
Sbjct: 347 DVRRDTSASLA---------YGRGPHVCPGVSLARLEAEIAVGTIFRRF 386
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 54.6 bits (132), Expect = 4e-09
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
+ E+LR Y P ++ R + +E+ +GD + T M + RD + +++PD +R
Sbjct: 269 VDELLRFYGPA-MVGRLVTQEVTVGDITMKPGQTAMLWFPIASRDRSAFDSPDNIVIER- 326
Query: 148 LPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
P G +C+ ++ ++ I+ L+
Sbjct: 327 -------------TPNRHLSLGHGIHRCLGAHLIRVEARVAITEFLKRI 362
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 54.6 bits (132), Expect = 4e-09
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+R + E++R P R+ +++ I I ++ I +RD + +PD
Sbjct: 278 AERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVL 337
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ +R FG G C+ A +++ T+ R F
Sbjct: 338 DANR--AAVSDVGFG-----------HGIHYCVGAALARSMLRMAYQTLWRRF 377
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 54.2 bits (131), Expect = 5e-09
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 78 LQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYE 137
N +++ + E++R P + R + ++G I K ++ + Y+ +RD V +
Sbjct: 292 KANPALVETMVPEIIRWQTPLAHMRRTAIADSELGGKTIRKGDKVVMWYYSGNRDDEVID 351
Query: 138 NPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKIL 194
P++F DR P + FG G +C+ + A +Q++I+ +L F
Sbjct: 352 RPEEFIIDRPRPRQHLSFG-----------FGIHRCVGNRLAEMQLRILWEEILTRF--- 397
Query: 195 PSPRYKTIDDLKY----------EMRVTLT 214
R + + + + +M V +
Sbjct: 398 --SRIEVMAEPERVRSNFVRGYAKMMVRVH 425
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 53.8 bits (130), Expect = 6e-09
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 18/119 (15%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++EVLR P + A R+ + ++ IP + + HRDP V+ + D+F
Sbjct: 286 APQAVEEVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRF 345
Query: 143 NPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPR 198
+ FG G C+ A L++ ++ + P+
Sbjct: 346 DITVKREAPSIAFG-----------GGPHFCLGTALARLELTEAVAALATRL---DPPQ 390
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 53.8 bits (130), Expect = 6e-09
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
LD ++E+LR P R + + IP T++ + HR P + +P +F
Sbjct: 296 LDGAVEEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAHRTPERFPDPHRF 355
Query: 143 NPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R F G CI A L+ +I + +L
Sbjct: 356 DIRRDTAGHLA---------FGHGIHFCIGAPLARLEARIAVRALLERC 395
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 42 TTRF----GVNMSIRHPCKIFEELHSIFGDDKERCPTFEELQNMPVLDRCIKEVLRMYPP 97
TTR GV R+P E+ + D PT ++E++R P
Sbjct: 278 TTRNAITHGVLALSRYP----EQRDRWWSDFDGLAPTA------------VEEIVRWASP 321
Query: 98 GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDR 146
+ R + ++I++ + + + + +RD + + +P F+ R
Sbjct: 322 VVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLAR 370
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 52.6 bits (127), Expect = 2e-08
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+ ++E LR P R ++ IP +M + A +RD + PD+
Sbjct: 269 ISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRL 328
Query: 143 NPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R F G C+ + A L+ ++ I +
Sbjct: 329 DITRDASGGVF---------FGHGIHFCLGAQLARLEGRVAIGRLFADR 368
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 52.7 bits (127), Expect = 2e-08
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVY-ENPDQF 142
+ ++E+LR+ P +AR R++ IGD IP ++ + +RD Y + +
Sbjct: 283 IPDAVEELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLYGSANRDERQYGPDAAEL 342
Query: 143 NPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R F+ G C+ A +Q ++ ++ +L
Sbjct: 343 DVTRCPRNILT---------FSHGAHHCLGAAAARMQCRVALTELLARC 382
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 52.6 bits (127), Expect = 2e-08
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 90 EVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLP 149
E++R YP + +R ++ I K + + DP +E P++ DR L
Sbjct: 273 ELMRRYPTVAV-SRNAVADVDADGVTIRKGDLVYLPSVLHNLDPASFEAPEEVRFDRGLA 331
Query: 150 EK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
G G +C+ A +++ + + L
Sbjct: 332 PIRHTTMG-----------VGAHRCVGAGLARMEVIVFLREWLGGM 366
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 51.9 bits (125), Expect = 3e-08
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 20/109 (18%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
+E+LR + R + + + + K I+ D P + R
Sbjct: 286 CEELLRRFSLVAD-GRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR- 343
Query: 148 LPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
Q F G+ C+ A ++ + + L
Sbjct: 344 -------------QKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRI 379
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 51.9 bits (125), Expect = 3e-08
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 79 QNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYEN 138
+ ++ R + E +R P R + ++ +I + IM + +RD V+ N
Sbjct: 295 SDPALIPRLVDEAVRWTAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSN 354
Query: 139 PDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILP 195
PD+F+ RF P + FG G C+ A L+MKI +L
Sbjct: 355 PDEFDITRF-PNRHLGFG-----------WGAHMCLGQHLAKLEMKIFFEELLPKL---- 398
Query: 196 SPRYKTIDDLKY----------EMRVTLT 214
+ + + + T
Sbjct: 399 -KSVELSGPPRLVATNFVGGPKNVPIRFT 426
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 51.5 bits (124), Expect = 4e-08
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 19/114 (16%)
Query: 84 LDRCIKEVLRMYPP--GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQ 141
+ ++E+ R P G R ++ + I ++ A +RD + + D+
Sbjct: 287 IPSAVEELTRWVPLGVGTAFPRYAVEDVTLRGVTIRAGEPVLASTGAANRDQAQFPDADR 346
Query: 142 FNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ DR FG G C+ A +++++ + +L+
Sbjct: 347 IDVDR--TPNQHLGFG-----------HGVHHCLGAPLARVELQVALEVLLQRL 387
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 51.5 bits (124), Expect = 4e-08
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 19/114 (16%)
Query: 84 LDRCIKEVLRMYPP--GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQ 141
+ E+LR +AR ++++ I + A +RDP+V+ +PD+
Sbjct: 277 RGTALDELLRWISHRTSVGLARIALEDVEVHGTRIAAGEPVYVSYLAANRDPDVFPDPDR 336
Query: 142 FNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ DR +G G+ C A +Q ++++ T+L
Sbjct: 337 IDLDR--DPNPHLAYG-----------NGHHFCTGAVLARMQTELLVDTLLERL 377
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 51.5 bits (124), Expect = 4e-08
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 84 LDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFN 143
L R ++E+ R + AR + +++ + + I+ D +++P +
Sbjct: 289 LQRGVEELFRRFAVVSD-ARYVVSDMEFHGTMLKEGDLILLPTALHGLDDRHHDDPMTVD 347
Query: 144 PDR 146
R
Sbjct: 348 LSR 350
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 51.5 bits (124), Expect = 5e-08
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 84 LDRCIKEVLRMYPP--GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQ 141
+ R ++EVLR + R +++ G I ++ + + D + P++
Sbjct: 274 MARAVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLPNFDERAFTGPEE 333
Query: 142 FNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
F+ R FG G CI A L+++ + + +
Sbjct: 334 FDAAR--TPNPHLTFG-----------HGIWHCIGAPLARLELRTMFTKLFTRL 374
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 51.5 bits (124), Expect = 5e-08
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 84 LDRCIKEVLRMYPP--GYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQ 141
R I E+LR P ++R +++I I + A +RDP V+ +PD+
Sbjct: 274 RPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDR 333
Query: 142 FNPDRFLPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ +R P F G C A L+ ++++ VL
Sbjct: 334 IDFER--------------SPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRV 374
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 51.2 bits (123), Expect = 6e-08
Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 20/109 (18%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
+E+ R +P AR + ++ + + + I+ D P + + R
Sbjct: 292 AEEMFRRFPVVSE-ARMVAKDQEYKGVFLKRGDMILLPTALHGLDDAANPEPWKLDFSR- 349
Query: 148 LPEKFGKYPKYNYQP-----FAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ F G +C A +++ + + L+
Sbjct: 350 -------------RSISHSTFGGGPHRCAGMHLARMEVIVTLEEWLKRI 385
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 50.8 bits (122), Expect = 7e-08
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 75 FEELQ-NMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDP 133
F ++ + +L ++E +R P R + ++ I +M A + DP
Sbjct: 312 FARVKADRNLLPGIVEEAIRWTTPVQHFMRTAATDTELCGQKIAAGDWLMLNYVAANHDP 371
Query: 134 NVYENPDQFNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 190
+ P +F+P R + FG C+ A L+M++++ +L
Sbjct: 372 AQFPEPRKFDPTRP-ANRHLAFGAGSHQ-----------CLGLHLARLEMRVLLDVLLDR 419
Query: 191 F 191
Sbjct: 420 V 420
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 49.6 bits (119), Expect = 2e-07
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 29/140 (20%)
Query: 88 IKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRF 147
E++R P R R+ ++ I K ++ + + + D V+++P FN R
Sbjct: 303 ADEIVRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILRN 362
Query: 148 LPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFKILPSPRYKTIDD 204
P FG G CI A + + ++ + V H P K I
Sbjct: 363 -PNPHVGFGGT----------GAHYCIGANLARMTINLIFNAVADHM-----PDLKPISA 406
Query: 205 LKY----------EMRVTLT 214
+ +V T
Sbjct: 407 PERLRSGWLNGIKHWQVDYT 426
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 49.1 bits (118), Expect = 3e-07
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVY-ENPDQ 141
++E LR P + R ++ +GD IP ++ A+ RD + D+
Sbjct: 275 WSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADR 334
Query: 142 FNPDRFLPEK---FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
F+ R + FG G C + ++ + + + F
Sbjct: 335 FDLTRTSGNRHISFG-----------HGPHVCPGAALSRMEAGVALPALYARF 376
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 48.8 bits (117), Expect = 4e-07
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGD-YDIPKDATIMNYIYAMHRDPNVYENPDQ 141
++E LR P + R +I + D I + I+ A +R P+ +E+ D
Sbjct: 275 WADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADT 334
Query: 142 FNPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
F+ R K FG G C+ A +++ + + ++ F
Sbjct: 335 FDATR--TVKEHLAFG-----------HGVHFCLGAPLARMEVTLALESLFGRF 375
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-06
Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 60/212 (28%)
Query: 36 MIEFDRTTRFGVNMSIRH--PC---KIFEELHSIFGDDKERCPT-----------FEELQ 79
+ D+ T + S+ P K+F+ L S+F PT ++
Sbjct: 349 HVNCDKLTTI-IESSLNVLEPAEYRKMFDRL-SVFPPS-AHIPTILLSLIWFDVIKSDVM 405
Query: 80 NMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATI-MNYIYAMHRD-PNVYE 137
+ +++ K L + ++ +E I I + + + YA+HR + Y
Sbjct: 406 VV--VNKLHKYSL--------VEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 138 NPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAY---------KYAMLQMKIV----I 184
P F+ D +P +Y Y++ I + + + +M + +
Sbjct: 455 IPKTFDSDDLIPPYLDQY-FYSH----------IGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 185 STVLRHFKILPSPRYKTIDDL----KYEMRVT 212
+RH + ++ L Y+ +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 32.5 bits (73), Expect = 0.10
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 38/125 (30%)
Query: 15 GYIIKGGVNKSYILHHPMNPMMIE-FDRTTRFGVNMS-----IRH---PCKIFEELHSIF 65
Y S+I HH N E ++ IRH + +
Sbjct: 471 QYFY------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 66 GDDK-------ERCPTFEELQN--MPVLDRCIKEVLR-----------MYPPGYII---A 102
K + P +E L N + L + + ++ M I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 103 RRIRR 107
++++R
Sbjct: 585 KQVQR 589
Score = 27.1 bits (59), Expect = 4.9
Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 32/151 (21%)
Query: 80 NMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDATIMNYIYAMHRDPNVYENP 139
K++L ++ ++ ++D + I + ++ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV-----------DNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 140 DQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAM-----------LQMKIVISTVL 188
D + L + Q F + I YK+ M + ++ I
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 189 RHFKILPS------PRYKTIDDLK---YEMR 210
R + R + L+ E+R
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 45.3 bits (108), Expect = 5e-06
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 84 LDRCIKEVLRMYPPGYIIARRI-RREIKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQF 142
+D +EVLR A R+ ++++ DI + + A +R P D+F
Sbjct: 259 IDSATEEVLRHASIVEAPAPRVALADVRMAGRDIHAGDVLTCSMLATNRAP-----GDRF 313
Query: 143 NPDRFLPEK----FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 191
+ R + FG G CI A LQ+++ + V+ F
Sbjct: 314 DITR--EKATHMAFG-----------HGIHHCIGAPLARLQLRVALPAVVGRF 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.035
Identities = 22/144 (15%), Positives = 36/144 (25%), Gaps = 57/144 (39%)
Query: 83 VLDRC-----------IKEVLRMYPPGYII------ARRIRREIKIGDYDIPKDATIMNY 125
V +R I +++ P I +RIR NY
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR----------------ENY 1688
Query: 126 IYAMHRDPNVYENPDQFNPDRFLPEKFGKY----PK------YNYQPFAAGNRKCIAYKY 175
AM + V + + E Y K QP
Sbjct: 1689 S-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP------------- 1734
Query: 176 AMLQMKIVISTVLRHFKILPSPRY 199
A+ M+ L+ ++P+
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADAT 1758
Score = 29.6 bits (66), Expect = 0.80
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 36/82 (43%)
Query: 49 MSIRHPCKIFE-------ELHSIFG-----DDKERCPTFEELQNM-----PVLDRCIK-- 89
+ +F +L +IFG DD FEEL+++ ++ IK
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-----YFEELRDLYQTYHVLVGDLIKFS 191
Query: 90 -EVL-----------RMYPPGY 99
E L +++ G
Sbjct: 192 AETLSELIRTTLDAEKVFTQGL 213
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 27.9 bits (63), Expect = 2.5
Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 43/111 (38%)
Query: 18 IKGGVN-----KSYILHHPMNPMMIEFDRTTRFGVNMSIRHPCKIFEEL--HSIFGDDKE 70
I G N ++LHH G + ++ + + + E
Sbjct: 97 ISGAPNNNDHAAGHVLHH-------------ALG-KTDYHYQLEMAKNITAAAEAIYTPE 142
Query: 71 RCPTFEELQNMPVLDRCIKEVLRMYPPGYIIARRIRREIKIGDYDIPKDAT 121
P +D IK LR P Y+ +I +
Sbjct: 143 EAPA--------KIDHVIKTALREKKPVYL--------------EIACNIA 171
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 27.4 bits (61), Expect = 3.3
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ 161
++ G + +++ + + + + LP F +Y + Y+
Sbjct: 145 LEEGPEENSAYEQLLSRLEEI-AEEGSETQVPGLDISALLPSDFSRY--FQYE 194
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 27.4 bits (61), Expect = 3.7
Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ 161
I++G+ + P I++ ++ + R + + F+ P++ ++ + Y
Sbjct: 147 IEVGETENPAYDHILSRLHEI-RYKDQKTSVPPFSVRELFPQQLEQF--FRYN 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.2
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 88 IKEV---LRMYPPGYIIARRIRREIK 110
+K++ L++Y A I+ ++
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 26.3 bits (58), Expect = 7.1
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 109 IKIGDYDIPKDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQ 161
++ D I++ + + D F LP G Y Y Y
Sbjct: 153 FQVSPRDNSALDPIIHGLKGV-VHHEKETFLDPFILRDLLPASLGSY--YRYT 202
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 26.5 bits (59), Expect = 8.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 92 LRMYPPGYIIARRIRREIKIGDYDI 116
+ G R++++ I GD+D+
Sbjct: 86 VARLRFGPATHRKVKKWIAEGDFDV 110
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center
for structural genomics, JCSG; HET: MSE EPE; 1.60A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 443
Score = 26.4 bits (58), Expect = 8.7
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 127 YAMHRDPNVYENPDQFNPDRFLPEK 151
+ N E+ + FNP ++
Sbjct: 39 GQGNNRINPIEDYNIFNPTELNTDQ 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.449
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,668,583
Number of extensions: 226073
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 117
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)