BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9546
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GD5|A Chain A, Solution Structure Of The Px Domain From Human P47phox
Nadph Oxidase
Length = 130
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 215 TSRYSIKTDFVSLVPDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSV 269
T Y + P G + PEN+ + HL D R+A N QGT + L S+
Sbjct: 47 TEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSL 106
Query: 270 DTVPSY-PQIVVNKTDFVSLVPD 291
T S P ++ DF + PD
Sbjct: 107 PTKISRCPHLL----DFFKVRPD 125
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 287 SLVPDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSVDT 332
+ P G + PEN+ + HL D R+A N QGT + L S+ T
Sbjct: 58 EMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPT 108
>pdb|1O7K|A Chain A, Human P47 Px Domain Complex With Sulphates
pdb|1O7K|B Chain B, Human P47 Px Domain Complex With Sulphates
pdb|1O7K|C Chain C, Human P47 Px Domain Complex With Sulphates
Length = 131
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 215 TSRYSIKTDFVSLVPDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSV 269
T Y P G + PEN+ + HL D R+A N QGT + L S+
Sbjct: 53 TEIYEFHKTLKEXFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLXSL 112
Query: 270 DTVPSY-PQIVVNKTDFVSLVPD 291
T S P ++ DF + PD
Sbjct: 113 PTKISRCPHLL----DFFKVRPD 131
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 290 PDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSVDT 332
P G + PEN+ + HL D R+A N QGT + L S+ T
Sbjct: 67 PIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLXSLPT 114
>pdb|1KQ6|A Chain A, P47phox Px Domain
Length = 141
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 215 TSRYSIKTDFVSLVPDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSV 269
T Y P G + PEN+ + HL D R+A N QGT + L S+
Sbjct: 45 TEIYEFHKTLKEXFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLXSL 104
Query: 270 DTVPSY-PQIVVNKTDFVSLVPDRRGVVLP-ENKTVK 304
T S P ++ DF + PD + LP +N+T K
Sbjct: 105 PTKISRCPHLL----DFFKVRPD--DLKLPTDNQTKK 135
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 290 PDRRGVVLPENKTVKHLS-----DKHRSANNNQGTCKLKMNNLDSVDT 332
P G + PEN+ + HL D R+A N QGT + L S+ T
Sbjct: 59 PIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLXSLPT 106
>pdb|3AZW|A Chain A, Crystal Structure Of The Receptor Binding Domain
pdb|3AZW|B Chain B, Crystal Structure Of The Receptor Binding Domain
Length = 438
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 148 PTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYSYGNAC 207
P ++ +V +S WS+ ++ F + N+ + +DI S+ + A +N + +
Sbjct: 95 PGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTIT 154
Query: 208 SNCC 211
+N
Sbjct: 155 TNMM 158
>pdb|3N7M|A Chain A, Crystal Structure Of W1252a Mutant Of Hcr DC VPI 5995
Length = 424
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 148 PTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYSYGNAC 207
P ++ +V +S WS+ ++ F + N+ + +DI S+ + A +N + +
Sbjct: 89 PGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTIT 148
Query: 208 SNCC 211
+N
Sbjct: 149 TNMM 152
>pdb|3N7L|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype DC VPI
5993 Binding Domain
Length = 424
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 148 PTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYSYGNAC 207
P ++ +V +S WS+ ++ F + N+ + +DI S+ + A +N + +
Sbjct: 89 PGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTIT 148
Query: 208 SNCC 211
+N
Sbjct: 149 TNMM 152
>pdb|4FVV|A Chain A, Crystal Structure Of HcrD-Sa-Gbl1C
pdb|4FVV|B Chain B, Crystal Structure Of HcrD-Sa-Gbl1C
Length = 423
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 148 PTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYSYGNAC 207
P ++ +V +S WS+ ++ F + N+ + +DI S+ + A +N + +
Sbjct: 89 PGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTIT 148
Query: 208 SNCC 211
+N
Sbjct: 149 TNMM 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,410,810
Number of Sequences: 62578
Number of extensions: 455338
Number of successful extensions: 1216
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 11
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)