Query psy9546
Match_columns 385
No_of_seqs 265 out of 1631
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:21:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 63.5 3.1 0.00011 30.2 1.7 27 62-88 18-44 (56)
2 3j21_g 50S ribosomal protein L 48.2 8.7 0.0003 27.3 1.9 27 62-88 13-39 (51)
3 1dvp_A HRS, hepatocyte growth 39.6 21 0.00072 32.1 3.6 25 63-87 161-187 (220)
4 1wfk_A Zinc finger, FYVE domai 39.4 14 0.00048 28.8 2.1 27 61-87 7-35 (88)
5 1joc_A EEA1, early endosomal a 34.8 16 0.00055 30.3 1.9 31 57-87 62-95 (125)
6 1vfy_A Phosphatidylinositol-3- 31.3 14 0.00047 27.7 0.7 24 64-87 12-37 (73)
7 2dkt_A Ring finger and CHY zin 30.8 19 0.00066 30.9 1.7 47 56-102 76-126 (143)
8 3zyq_A Hepatocyte growth facto 29.8 30 0.001 31.4 3.0 25 63-87 164-190 (226)
9 1x4u_A Zinc finger, FYVE domai 29.4 15 0.00053 28.1 0.8 26 62-87 13-40 (84)
10 3u5e_m 60S ribosomal protein L 28.7 23 0.00078 29.1 1.8 25 62-86 92-118 (128)
11 2yw8_A RUN and FYVE domain-con 27.2 18 0.0006 27.7 0.7 26 62-87 18-45 (82)
12 1z2q_A LM5-1; membrane protein 27.0 18 0.00061 27.8 0.7 26 62-87 20-47 (84)
13 1wfl_A Zinc finger protein 216 20.6 1.3E+02 0.0045 22.8 4.5 41 62-103 24-69 (74)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=63.49 E-value=3.1 Score=30.23 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.2
Q ss_pred ccccccccCcccCCCCccCcccCcccc
Q psy9546 62 HLKYCFTCKIFRPPRASHCSICDNCVD 88 (385)
Q Consensus 62 ~~k~C~tC~i~kP~RS~HC~~C~rCV~ 88 (385)
....|..|..+-|+|+.-|+.|+..-+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 567899999999999999998885433
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.23 E-value=8.7 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.4
Q ss_pred ccccccccCcccCCCCccCcccCcccc
Q psy9546 62 HLKYCFTCKIFRPPRASHCSICDNCVD 88 (385)
Q Consensus 62 ~~k~C~tC~i~kP~RS~HC~~C~rCV~ 88 (385)
..+.|..|..+-|+++..|+.|+.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 567899999999999999999987543
No 3
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.55 E-value=21 Score=32.13 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=18.1
Q ss_pred cccccccCccc--CCCCccCcccCccc
Q psy9546 63 LKYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 63 ~k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
...|..|...= -.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 36898887532 24789999998854
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.37 E-value=14 Score=28.83 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=18.9
Q ss_pred cccccccccCcc--cCCCCccCcccCccc
Q psy9546 61 LHLKYCFTCKIF--RPPRASHCSICDNCV 87 (385)
Q Consensus 61 ~~~k~C~tC~i~--kP~RS~HC~~C~rCV 87 (385)
.....|..|... --.|-|||+.|++-+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEE
Confidence 455678888763 235789999998844
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.83 E-value=16 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=20.9
Q ss_pred cCccc-ccccccccCccc--CCCCccCcccCccc
Q psy9546 57 TSSPL-HLKYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 57 ~g~~~-~~k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
.|..+ ....|..|...= -.|-|||+.||+-+
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEE
Confidence 34433 356788888642 35789999998844
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.31 E-value=14 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=17.3
Q ss_pred ccccccCccc--CCCCccCcccCccc
Q psy9546 64 KYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 64 k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
..|..|...= -.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 4688887532 24789999999854
No 7
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=30.82 E-value=19 Score=30.86 Aligned_cols=47 Identities=28% Similarity=0.568 Sum_probs=32.9
Q ss_pred ccCcccccccccccCcccCCCC-ccCcccCccccc--cc-ccCcccccccc
Q psy9546 56 LTSSPLHLKYCFTCKIFRPPRA-SHCSICDNCVDH--FD-HHCPWVGNCVG 102 (385)
Q Consensus 56 ~~g~~~~~k~C~tC~i~kP~RS-~HC~~C~rCV~r--fD-HHCpWv~NCIG 102 (385)
..|......||..|+.+-+.+. .||..||-|-.. -| -||.--|.|+.
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SSCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3466677889999999976654 778888888765 11 26766666654
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.81 E-value=30 Score=31.40 Aligned_cols=25 Identities=24% Similarity=0.661 Sum_probs=16.8
Q ss_pred cccccccCccc--CCCCccCcccCccc
Q psy9546 63 LKYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 63 ~k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
...|..|...= --|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 35788887421 23679999998754
No 9
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.45 E-value=15 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=18.4
Q ss_pred ccccccccCcc--cCCCCccCcccCccc
Q psy9546 62 HLKYCFTCKIF--RPPRASHCSICDNCV 87 (385)
Q Consensus 62 ~~k~C~tC~i~--kP~RS~HC~~C~rCV 87 (385)
+...|..|... --.|-|||+.|++-+
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 34578888753 235889999998844
No 10
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=28.74 E-value=23 Score=29.06 Aligned_cols=25 Identities=32% Similarity=0.739 Sum_probs=21.6
Q ss_pred ccccccccCcccCCCCccCcc--cCcc
Q psy9546 62 HLKYCFTCKIFRPPRASHCSI--CDNC 86 (385)
Q Consensus 62 ~~k~C~tC~i~kP~RS~HC~~--C~rC 86 (385)
....|..|..+-|+|+.-|+. |+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 458899999999999999995 8753
No 11
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.16 E-value=18 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=18.5
Q ss_pred ccccccccCccc--CCCCccCcccCccc
Q psy9546 62 HLKYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 62 ~~k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
+...|..|...= -.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 355788887532 24789999998854
No 12
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.02 E-value=18 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=18.8
Q ss_pred ccccccccCccc--CCCCccCcccCccc
Q psy9546 62 HLKYCFTCKIFR--PPRASHCSICDNCV 87 (385)
Q Consensus 62 ~~k~C~tC~i~k--P~RS~HC~~C~rCV 87 (385)
+...|..|...= -.|-|||+.|++-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 456788887642 24789999998854
No 13
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.58 E-value=1.3e+02 Score=22.83 Aligned_cols=41 Identities=22% Similarity=0.583 Sum_probs=27.1
Q ss_pred ccccccccCcccCCCCccCcccCccc---ccc--cccCccccccccc
Q psy9546 62 HLKYCFTCKIFRPPRASHCSICDNCV---DHF--DHHCPWVGNCVGK 103 (385)
Q Consensus 62 ~~k~C~tC~i~kP~RS~HC~~C~rCV---~rf--DHHCpWv~NCIG~ 103 (385)
..+.|..|+..-.+=...|+ |+.-. -|+ ||.|++-+.=.|+
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhch
Confidence 35689999876444457888 87532 233 8999887665554
Done!