Query psy9546
Match_columns 385
No_of_seqs 265 out of 1631
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 22:21:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9546.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9546hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 77.3 0.47 3.4E-05 32.7 1.7 25 61-85 17-41 (56)
2 d1vfya_ g.50.1.1 (A:) vps27p p 48.8 4.1 0.0003 28.4 2.1 24 65-88 7-32 (67)
3 d1dvpa2 g.50.1.1 (A:149-220) H 43.5 6.5 0.00047 27.8 2.5 25 64-88 14-40 (72)
4 d2pg3a1 c.26.2.1 (A:1-230) Que 42.4 2.5 0.00018 35.4 0.1 24 64-89 183-206 (230)
5 d2adra2 g.37.1.1 (A:131-161) A 39.0 3.1 0.00023 24.9 0.1 14 78-91 2-15 (31)
6 d2dmda2 g.37.1.1 (A:8-33) Zinc 36.8 4.2 0.00031 23.1 0.4 15 78-92 2-16 (26)
7 d1wfka_ g.50.1.1 (A:) Zinc fin 34.9 8.1 0.00059 28.4 1.9 27 61-87 7-35 (88)
8 d1joca1 g.50.1.1 (A:1348-1411) 34.2 5.4 0.00039 27.5 0.7 27 62-88 7-35 (64)
9 d2dkta2 g.93.1.1 (A:82-137) RI 31.0 4 0.00029 27.9 -0.4 16 74-89 31-46 (56)
10 d2c6aa1 g.41.11.1 (A:290-335) 25.8 13 0.00096 24.1 1.5 19 65-83 15-33 (46)
11 d1njqa_ g.37.1.3 (A:) SUPERMAN 25.0 11 0.00081 23.5 0.9 13 74-86 2-14 (37)
12 d1lpva_ g.62.1.1 (A:) DM domai 23.9 12 0.00084 25.1 0.9 26 73-98 6-33 (52)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=77.27 E-value=0.47 Score=32.69 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=22.1
Q ss_pred cccccccccCcccCCCCccCcccCc
Q psy9546 61 LHLKYCFTCKIFRPPRASHCSICDN 85 (385)
Q Consensus 61 ~~~k~C~tC~i~kP~RS~HC~~C~r 85 (385)
.....|..|..+-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 3577899999999999999998865
No 2
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.78 E-value=4.1 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.557 Sum_probs=17.0
Q ss_pred cccccCc--ccCCCCccCcccCcccc
Q psy9546 65 YCFTCKI--FRPPRASHCSICDNCVD 88 (385)
Q Consensus 65 ~C~tC~i--~kP~RS~HC~~C~rCV~ 88 (385)
-|..|.. -.-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 4777775 23357899999998553
No 3
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=43.46 E-value=6.5 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=18.1
Q ss_pred ccccccCccc--CCCCccCcccCcccc
Q psy9546 64 KYCFTCKIFR--PPRASHCSICDNCVD 88 (385)
Q Consensus 64 k~C~tC~i~k--P~RS~HC~~C~rCV~ 88 (385)
..|..|...= -.|-|||+.|++.+-
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 4588888632 347899999998653
No 4
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=42.39 E-value=2.5 Score=35.44 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=19.5
Q ss_pred ccccccCcccCCCCccCcccCccccc
Q psy9546 64 KYCFTCKIFRPPRASHCSICDNCVDH 89 (385)
Q Consensus 64 k~C~tC~i~kP~RS~HC~~C~rCV~r 89 (385)
..-.+| ++|.|.+||..|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 444566 678889999999999987
No 5
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=39.02 E-value=3.1 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=12.1
Q ss_pred ccCcccCccccccc
Q psy9546 78 SHCSICDNCVDHFD 91 (385)
Q Consensus 78 ~HC~~C~rCV~rfD 91 (385)
..|.+|+||..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 46999999999887
No 6
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.78 E-value=4.2 Score=23.05 Aligned_cols=15 Identities=27% Similarity=0.939 Sum_probs=12.1
Q ss_pred ccCcccCcccccccc
Q psy9546 78 SHCSICDNCVDHFDH 92 (385)
Q Consensus 78 ~HC~~C~rCV~rfDH 92 (385)
|-|.+|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999988763
No 7
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.91 E-value=8.1 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=19.0
Q ss_pred cccccccccCcc--cCCCCccCcccCccc
Q psy9546 61 LHLKYCFTCKIF--RPPRASHCSICDNCV 87 (385)
Q Consensus 61 ~~~k~C~tC~i~--kP~RS~HC~~C~rCV 87 (385)
.....|..|... --.|-|||+.|++.+
T Consensus 7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cccCcCcccCchhccccccccccccChhh
Confidence 445678888752 245779999999854
No 8
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.20 E-value=5.4 Score=27.49 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=18.2
Q ss_pred ccccccccCcc--cCCCCccCcccCcccc
Q psy9546 62 HLKYCFTCKIF--RPPRASHCSICDNCVD 88 (385)
Q Consensus 62 ~~k~C~tC~i~--kP~RS~HC~~C~rCV~ 88 (385)
+..-|..|... --.|-|||+.||+.+=
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeec
Confidence 34567777642 2247899999998653
No 9
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.02 E-value=4 Score=27.93 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=9.4
Q ss_pred CCCCccCcccCccccc
Q psy9546 74 PPRASHCSICDNCVDH 89 (385)
Q Consensus 74 P~RS~HC~~C~rCV~r 89 (385)
..--.||..|+.|+..
T Consensus 31 ~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTT 46 (56)
T ss_dssp GGGEEEETTTTEEEEG
T ss_pred CccccccCccccccCc
Confidence 3345666666666644
No 10
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.83 E-value=13 Score=24.09 Aligned_cols=19 Identities=42% Similarity=1.107 Sum_probs=16.7
Q ss_pred cccccCcccCCCCccCccc
Q psy9546 65 YCFTCKIFRPPRASHCSIC 83 (385)
Q Consensus 65 ~C~tC~i~kP~RS~HC~~C 83 (385)
-|..|...-||--.||..|
T Consensus 15 kC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred cCccccccCCcchhHhHHH
Confidence 4999999999999888776
No 11
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.02 E-value=11 Score=23.46 Aligned_cols=13 Identities=46% Similarity=1.096 Sum_probs=10.8
Q ss_pred CCCCccCcccCcc
Q psy9546 74 PPRASHCSICDNC 86 (385)
Q Consensus 74 P~RS~HC~~C~rC 86 (385)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7888889999874
No 12
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.89 E-value=12 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=17.5
Q ss_pred cCCCCccCcccCcccccccc--cCcccc
Q psy9546 73 RPPRASHCSICDNCVDHFDH--HCPWVG 98 (385)
Q Consensus 73 kP~RS~HC~~C~rCV~rfDH--HCpWv~ 98 (385)
+||++..|+.=+.-+..-+| +|+|-+
T Consensus 6 ~~p~CaRCrNHG~~~~lKgHKr~C~~~~ 33 (52)
T d1lpva_ 6 TPPNCARCRNHGLKITLKGHKRYCKFRY 33 (52)
T ss_dssp CCSSCHHHHTTTCCCTTTTCGGGCTTTT
T ss_pred CCCCCcccccCCceeecCCcccccCCCC
Confidence 45665566655666666666 999976
Done!