RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9546
(385 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 134 bits (339), Expect = 5e-38
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 63 LKYCFTCKIFRPPRASHCSICDNCVDHFDHHCPWVGNCVGKRNYRFFYAFIVSLSFHIVF 122
LK+C TC I +PPR+ HC +C+ CV FDHHCPW+ NC+G+RN+++F F++ L+ +++
Sbjct: 41 LKFCSTCNIIKPPRSHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLIL 100
Query: 123 VFCCSVAHLSILAEGRLVFDAVRESPTSVLVVAV--TFSSVWSVLGLAGFHTYLAASNQT 180
+ S +L L +F + S S +++ V F ++ + L FH YL N T
Sbjct: 101 LLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLF-LSFLLFFHLYLILKNIT 159
Query: 181 TNEDIK 186
T E IK
Sbjct: 160 TYEYIK 165
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 117 bits (296), Expect = 2e-30
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 64 KYCFTCKIFRPPRASHCSICDNCVDHFDHHCPWVGNCVGKRNYRFFYAFIVSLSFHIVFV 123
+C TC I++PPR+ HCSIC+ CV FDHHCPW+ NCVG RNYRFFY F++ + V
Sbjct: 110 NFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVV 169
Query: 124 FC-CSVAHLSILAEGRLVFDAVRESPTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTN 182
+ I + A+ ++ V F L F YL +N TT
Sbjct: 170 LLSTAYYIAGIFSIRHDTSLAICFLIFGCSLLGVVFF--IITTLLLLFLIYLILNNLTTI 227
Query: 183 EDIKGSFTSRRGRASFNPYSYG 204
E I+ S F P
Sbjct: 228 EFIQISRGGSTLE--FFPLCRE 247
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 31.9 bits (73), Expect = 0.64
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 143 AVRESPTSVLVVAVTFSSVWSVLGLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYS 202
V + + + AA+ + K RR A Y+
Sbjct: 1130 VVTGGGAAAGAAVAAAPAASAATFSDKAAAAAAAAAAAAAAEAKKVEAERRAEAKMQGYT 1189
Query: 203 YGNACSNCCNATTSR 217
G ACS C N T R
Sbjct: 1190 -GEACSECGNFTLVR 1203
>gnl|CDD|224582 COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 407
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 108 FFYAFIVSLSFHIVFVFCCSVAHLSILAE-GRLVFDAVRESPTS-----------VLVVA 155
A ++ L F I + + S+ E R + + SP S +V
Sbjct: 185 LLVAILIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVG 244
Query: 156 VTFSSVWSVLGLAGFHTYLAASNQTT 181
+T ++W + LA + T
Sbjct: 245 LTQIALWLLALTIATFLSLAVALAGT 270
>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 29.4 bits (67), Expect = 2.0
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 156 VTFSSVWSVLGLAGFHTYLAASN 178
V FSSV VLG G Y AA+N
Sbjct: 131 VLFSSVAGVLGSPGQANY-AAAN 152
>gnl|CDD|227209 COG4872, COG4872, Predicted membrane protein [Function unknown].
Length = 394
Score = 29.8 bits (67), Expect = 2.5
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 101 VGKRNYRFFYAFIVSLSFHIVFVFCCSVAHLSILAEGRLVFDAVRESPTSVLVVAVTFSS 160
R F IV IV + + I +F +VL+ + F
Sbjct: 301 PPAREVVFNTTSIVIFLGFIVAIPFAGRENNGIRDLAYFIF--------NVLLAVLYFGF 352
Query: 161 VWSVLGLAGF 170
+ +L +GF
Sbjct: 353 IQEMLKTSGF 362
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 28.3 bits (64), Expect = 5.0
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 42 ELSPGEKPLHNFQTLTSSPLHLKYCFTCKIFRPPRASHCSIC 83
+S LH FQT + PL+ F S +IC
Sbjct: 135 SVSDTMTLLHTFQTTFTEPLYP-------AFWLGSGSSVTIC 169
>gnl|CDD|219179 pfam06793, UPF0262, Uncharacterized protein family (UPF0262).
Length = 159
Score = 27.6 bits (62), Expect = 6.5
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 130 HLSILAEGRLVFDAVRESPTSVLVVAVTFSSVWSVLGLAGF 170
LS+ EGRLVFD E V VT L L F
Sbjct: 56 KLSL-QEGRLVFDIRTEDGEPV----VTH-----HLSLTPF 86
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.3 bits (63), Expect = 8.7
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 300 NKTVKHLSDKHRSANNNQGTCKLKMNNLDSVDTVPSY-PQIVVNKNTHENSQAQFSN 355
+ AN + +LK L V SY Q++ N EN+ + N
Sbjct: 1234 EELTTEAKGLKGEANRSTNVDELKEIKLQ----VFSYLQQVIKENNKMENALHEIKN 1286
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.414
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,483,260
Number of extensions: 1672432
Number of successful extensions: 1434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 25
Length of query: 385
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 286
Effective length of database: 6,546,556
Effective search space: 1872315016
Effective search space used: 1872315016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)