RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9546
(385 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.013
Identities = 56/357 (15%), Positives = 103/357 (28%), Gaps = 129/357 (36%)
Query: 11 TKLVSALHLELDHATPLYVIQIVGRGGLATRELSPGEKPLHNFQTLTSSPLH---LKYCF 67
KL AL LEL A V+ I G G G K + ++
Sbjct: 138 LKLRQAL-LELRPAK--NVL-IDGVLGS-------G-K-----TWVALDVCLSYKVQCKM 180
Query: 68 TCKIFRPPRASHCSICDNCVDHFDHHCPW--VGNCVGKRNYRFFYAFIVSLSFHIVFVFC 125
KIF W + NC + + L + I +
Sbjct: 181 DFKIF-----------------------WLNLKNC---NSPETVLEMLQKLLYQIDPNWT 214
Query: 126 CSVAHLSILAEGRLVFDAVRES----------PTSVLVVAVTFSSVWSVLGLAGFHTYLA 175
+ + +L +++ +LV+ +V +
Sbjct: 215 ---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----LNVQNA----------- 256
Query: 176 ASNQTTNEDIKGSFTSRRGRASFNPYSYGNACSNCCNATTSRYSIKTDFVSLVPDRRGVV 235
+ +FN +C T+R+ TDF+S
Sbjct: 257 -------KAWN----------AFNL--------SCKILLTTRFKQVTDFLS--------- 282
Query: 236 LPENKTVKHLSDKHRSANNNQG-TCKLKMNNLD-SVDTVPSYPQIVVNKTDFVSLVPD-- 291
T H+S H S L + LD +P +++ +S++ +
Sbjct: 283 ---AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAESI 337
Query: 292 RRGVVLPENKTVKHL-SDKHRSANNNQGTCKLKMNNLDSVDTVPSYPQIVV-NKNTH 346
R G+ +N KH+ DK + + +N L+ + + ++ V + H
Sbjct: 338 RDGLATWDN--WKHVNCDKLTTII------ESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Score = 32.5 bits (73), Expect = 0.29
Identities = 43/364 (11%), Positives = 99/364 (27%), Gaps = 118/364 (32%)
Query: 2 LLYIIVNTCTKLVSALHLELDHATPLYVIQIVGRGGLATRELSPGEKPLHNFQTLTSSPL 61
+L ++ ++ DH++ + + +H+ Q
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL-------------------RIHSIQA------ 232
Query: 62 HLKYCFTCKIFRPPRASHC-----SICD-NCVDHFDHHCPWVGNCVGKRNYRFFYAFIVS 115
L+ ++ + +C ++ + + F+ C + + R + +
Sbjct: 233 ELR-----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAA 284
Query: 116 LSFHIVFVFCCSVAH----LSILAE--GRLVFD----AVRESPTSVLVVAVTFSSVWSVL 165
+ HI S+L + D + +P +++ + +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSI----IAESI 337
Query: 166 --GLAGFHTYLAASNQTTNEDIKGSFTSRRGRASFNPYSYGNACSNCCNATTSRYSIKTD 223
GLA + + + I+ S P Y +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL------NVLEPAEY-----------------RKM 374
Query: 224 FVSLVPDRRGVVLPENKTVKHLSDKHRSANNNQGTCKLKM--NNLDSVDTVPSYPQIVVN 281
F L V P + + L + ++ D +VVN
Sbjct: 375 FDRL------SVFPPS--AH-IPTI-----------LLSLIWFDVIKSD-----VMVVVN 409
Query: 282 KTDFVSLV---PDRRGVVLP-----ENKTVKHLSDKHRSA-NNNQGTCKLKMNNLDSVDT 332
K SLV P + +P +++ HRS ++ ++L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPY 468
Query: 333 VPSY 336
+ Y
Sbjct: 469 LDQY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.017
Identities = 51/313 (16%), Positives = 84/313 (26%), Gaps = 109/313 (34%)
Query: 110 YAFIVSLSFHIVFVFCCSVAHLSILAEGRLVFDAVRESPTSVLVVAVTFSSVWSVLGLAG 169
+ +V + S L E F+ + PT ++ L G
Sbjct: 18 HVLLVPTASFF---------IASQLQEQ---FNKILPEPTEGFAADDEPTTP---AELVG 62
Query: 170 -FHTYLAASNQTTNEDIKGSFTS--RRGRASF-NPYSYGN-----ACSNCCNATT----S 216
F Y+++ + + G F F N Y GN A T +
Sbjct: 63 KFLGYVSSLVEPSK---VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 217 RYSIKTDFVSLVPDRRGVVLPENKTVKHLSDKHRSANNN----------QGTCKLKMNNL 266
+ IK + + +R P +K K S R+ QG N
Sbjct: 120 KELIKNYITARIMAKR----PFDK--KSNSALFRAVGEGNAQLVAIFGGQG------NTD 167
Query: 267 DSVD----TVPSYPQIVVNKTDFVSLVPDRRGVVLPENKTVKHLSDKHRSANN--NQGTC 320
D + +Y +V D + +T+ L A QG
Sbjct: 168 DYFEELRDLYQTYHVLV---GDLIKFS----------AETLSELIRTTLDAEKVFTQG-L 213
Query: 321 KLKMNNLDSVDTVP----------SYPQIVVNKNTHENSQAQFSNSPGDCHRSQVTVPTV 370
+ + L++ P S P I V Q
Sbjct: 214 NI-LEWLENPSNTPDKDYLLSIPISCPLIGV---------IQL----------------A 247
Query: 371 HYPMGAESIGLSH 383
HY + A+ +G +
Sbjct: 248 HYVVTAKLLGFTP 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.13
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 18/46 (39%)
Query: 238 ENKTVKHLSDKHRSANNNQGTCKLKMNNLDSVDTVPSYPQIVVNKT 283
E + +K L Q + LK+ DS P + + T
Sbjct: 18 EKQALKKL----------QAS--LKLYADDSA------PALAIKAT 45
Score = 29.9 bits (66), Expect = 0.77
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 12 KLVSALHLELDHATPLYVIQIVGRGGLATRE 42
KL ++L L D + P I+ AT E
Sbjct: 24 KLQASLKLYADDSAPALAIK-------ATME 47
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 30.2 bits (67), Expect = 1.2
Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 7/111 (6%)
Query: 34 GRGGLATRELSPG-----EKPLHNFQTLTSSPLHLKYCFTCKIFRPPRASHCSICDNCVD 88
G G A L PG PL S + C + R S C + C
Sbjct: 16 GNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLL-GKEKLMRCSQCRVAKYC-S 73
Query: 89 HFDHHCPWVGNCVGKRNYRFFYAFIVSLSFHIVFVFCCSVAHLSILAEGRL 139
W + + + S ++ + + +L
Sbjct: 74 AKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKL 124
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 29.7 bits (67), Expect = 1.7
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 156 VTFSSVWSVLGLAGFHTYLAASN 178
V FSS S G G Y A N
Sbjct: 357 VLFSSFASAFGAPGLGGY-APGN 378
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 156 VTFSSVWSVLGLAGFHTYLAASN 178
V FSSV ++ G AG Y AA
Sbjct: 398 VLFSSVAAIWGGAGQGAY-AAGT 419
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 29.3 bits (66), Expect = 2.2
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 156 VTFSSVWSVLGLAGFHTYLAASN 178
V FSS +V G G Y AA+N
Sbjct: 371 VLFSSGAAVWGSGGQPGY-AAAN 392
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein,
structural genomics, PSI, protein structure initiative;
NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Length = 56
Score = 26.6 bits (58), Expect = 2.9
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 61 LHLKYCFTCKIFRPPRASHCSIC 83
K C C P RA+ C C
Sbjct: 17 FLKKVCRKCGALNPIRATKCRRC 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase,
HSP90, transferase-transferase inhibitor; HET: SFG;
1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A*
3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 28.7 bits (63), Expect = 3.6
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 34 GRGGLATRELSPG-----EKPLHNFQTLTSSPLHLKYCF--TCKIFRPPR---ASHCSIC 83
GRG A R G T+ H + CF + + R A +C +
Sbjct: 18 GRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVE 77
Query: 84 DNCVDHFDHHC 94
D H
Sbjct: 78 CQKEDWPLHKL 88
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 28.6 bits (64), Expect = 3.8
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 156 VTFSSVWSVLGLAGFHTYLAASN 178
V FSSV G AG Y AA+N
Sbjct: 387 VLFSSVTGTWGNAGQGAY-AAAN 408
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 28.4 bits (62), Expect = 4.3
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 34 GRGGLATRELSPG-----EKPLHNFQTLTSSPLHLKYCFTCKIFRPPRASHCSIC 83
GRG AT+E E+ + + L C TC R + C C
Sbjct: 18 GRGLKATKEFWAADVIFAERA---YSAVVFDSLINFVCHTCFK-RQEKLHRCGQC 68
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta
sheet, activator, ME binding, nucleus, repressor,
transcription regulation; 1.55A {Homo sapiens}
Length = 120
Score = 27.3 bits (60), Expect = 4.9
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 50 LHNFQTLTSSPLHLKYCFTCKIFRPPRASHCSICDNCVDHFD 91
+ +T+ HL+ C C + + CDNC +
Sbjct: 3 MGALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQ 44
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid
biosynthesis, isomerase, lysine biosy; 2.60A
{Mycobacterium tuberculosis}
Length = 290
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 223 DFVSLVPDRRGVVLPENKTVKHLSDKHR 250
DFV L+PD ++ V L D+ +
Sbjct: 13 DFV-LLPDVDAELVLTAARVAALCDRRK 39
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 284 DFVSLVPDRRGVVLPENKTVKHLSDKHR 311
DFV L+PD ++ V L D+ +
Sbjct: 13 DFV-LLPDVDAELVLTAARVAALCDRRK 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.414
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,606,402
Number of extensions: 313928
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 26
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)