RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9546
         (385 letters)



>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 46

 Score = 24.8 bits (54), Expect = 2.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 66 CFTCKIFRPPRASHCSIC 83
          C +C    PP  SHC+ C
Sbjct: 16 CTSCNEMNPPLPSHCNRC 33


>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 56

 Score = 24.4 bits (53), Expect = 6.3
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 61 LHLKYCFTCKIFRPPRASHCSICDN 85
             K C  C    P RA+ C  C +
Sbjct: 17 FLKKVCRKCGALNPIRATKCRRCHS 41


>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 168

 Score = 25.7 bits (55), Expect = 7.5
 Identities = 20/141 (14%), Positives = 32/141 (22%), Gaps = 3/141 (2%)

Query: 19  LELDHATPLYVIQIVGRGGLATRELSPGEKPLHNFQTLTSSPLHLKYCFTCKIFRPPRAS 78
           +    A PL    +     L      PG+K          S   L              S
Sbjct: 1   IPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRS 60

Query: 79  HCSICDNCVDHFDHHCPWVGNCVGKRNYRFFYAFIVSLSFHIVFVFCCSVAHLSILA-EG 137
                D      DH+   +        Y   +  IV                   +   G
Sbjct: 61  SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIV--VCASSLTDIDFNIMPKAMKVGG 118

Query: 138 RLVFDAVRESPTSVLVVAVTF 158
           R+V  ++ E    + +     
Sbjct: 119 RIVSISIPEQHEMLSLKPYGL 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,384,398
Number of extensions: 62440
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 17
Length of query: 385
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,213,086
Effective search space: 361499628
Effective search space used: 361499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)