BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9547
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 324 bits (830), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 216/345 (62%), Gaps = 4/345 (1%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
FQ +L W+ + R LPWR+ +PY VW+SEVMLQQT+V+TV+PY+E+FI +PT++ A
Sbjct: 16 FQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALA 75
Query: 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132
ED VLK WEGLGYYSRVRN A ++V ++GG+VP D + +KGVG YT GA+
Sbjct: 76 DADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVL 135
Query: 133 SICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMD 192
S+ Y +P PAVDGNV R+ RLF + DDI+K T+ +E +V + M+ N FN+AL++
Sbjct: 136 SLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIE 195
Query: 193 LGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKYL 252
LGA VC + P C CP+ +C A+ E PVK+ KT VK V L V+ D + L
Sbjct: 196 LGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVL 255
Query: 253 IQKRPTTGLLSNFYMFLSFESDTPYTSQ--VEFLSENLPFKVNLNEKCLGNVKHVFSHLK 310
I+KR +TGLL+N + F S E+D + + + E +V L E + + +H FSHL
Sbjct: 256 IRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV-SFEHAFSHLV 314
Query: 311 WNMDVYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKLF 355
W + V+ G P + Y+L E ++K YAFPV +Q+VW+ +
Sbjct: 315 WQLTVFPGRLVHGG-PVEEPYRLAPEDELKAYAFPVSHQRVWREY 358
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 215/343 (62%), Gaps = 4/343 (1%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
FQ +L W+ + R LPWR+ +PY VW+SEVMLQQT+V+TV+PY+E+FI +PT++ A
Sbjct: 5 FQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALA 64
Query: 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132
ED VLK WEGLGYYSRVRN A ++V ++GG+VP D + +KGVG YT GA+
Sbjct: 65 DADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVL 124
Query: 133 SICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMD 192
S+ Y +P PAVDGNV R+ RLF + DDI+K T+ +E +V + M+ N FN+AL++
Sbjct: 125 SLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIE 184
Query: 193 LGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKYL 252
LGA VC + P C CP+ +C A+ E PVK+ KT VK V L V+ D + L
Sbjct: 185 LGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVL 244
Query: 253 IQKRPTTGLLSNFYMFLSFESDTPYTSQ--VEFLSENLPFKVNLNEKCLGNVKHVFSHLK 310
I+KR +TGLL+N + F S E+D + + + E +V L E + + +H FSHL
Sbjct: 245 IRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV-SFEHAFSHLV 303
Query: 311 WNMDVYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWK 353
W + V+ G P + Y+L E ++K YAFPV +Q+VW+
Sbjct: 304 WQLTVFPGRLVHGG-PVEEPYRLAPEDELKAYAFPVSHQRVWR 345
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 322 bits (824), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 151/345 (43%), Positives = 216/345 (62%), Gaps = 4/345 (1%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
FQ +L W+ + R LPWR+ +PY VW+SEVMLQQT+V+TV+PY+E+FI +PT++ A
Sbjct: 16 FQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALA 75
Query: 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132
ED VLK WEGLGYYSRVRN A ++V ++GG+VP D + +KGVG YT GA+
Sbjct: 76 DADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVL 135
Query: 133 SICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMD 192
S+ Y +P PAV+GNV R+ RLF + DDI+K T+ +E +V + M+ N FN+AL++
Sbjct: 136 SLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIE 195
Query: 193 LGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKYL 252
LGA VC + P C CP+ +C A+ E PVK+ KT VK V L V+ D + L
Sbjct: 196 LGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVL 255
Query: 253 IQKRPTTGLLSNFYMFLSFESDTPYTSQ--VEFLSENLPFKVNLNEKCLGNVKHVFSHLK 310
I+KR +TGLL+N + F S E+D + + + E +V L E + + +H FSHL
Sbjct: 256 IRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV-SFEHAFSHLV 314
Query: 311 WNMDVYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKLF 355
W + V+ G P + Y+L E ++K YAFPV +Q+VW+ +
Sbjct: 315 WQLTVFPGRLVHGG-PVEEPYRLAPEDELKAYAFPVSHQRVWREY 358
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 321 bits (822), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 151/345 (43%), Positives = 216/345 (62%), Gaps = 4/345 (1%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
FQ +L W+ + R LPWR+ +PY VW+SEVMLQQT+V+TV+PY+E+FI +PT++ A
Sbjct: 16 FQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALA 75
Query: 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132
ED VLK WEGLGYYSRVRN A ++V ++GG+VP D + +KGVG YT GA+
Sbjct: 76 DADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVL 135
Query: 133 SICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMD 192
S+ Y +P PAV+GNV R+ RLF + DDI+K T+ +E +V + M+ N FN+AL++
Sbjct: 136 SLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIE 195
Query: 193 LGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKYL 252
LGA VC + P C CP+ +C A+ E PVK+ KT VK V L V+ D + L
Sbjct: 196 LGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVL 255
Query: 253 IQKRPTTGLLSNFYMFLSFESDTPYTSQ--VEFLSENLPFKVNLNEKCLGNVKHVFSHLK 310
I+KR +TGLL+N + F S E+D + + + E +V L E + + +H FSHL
Sbjct: 256 IRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV-SFEHAFSHLV 314
Query: 311 WNMDVYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKLF 355
W + V+ G P + Y+L E ++K YAFPV +Q+VW+ +
Sbjct: 315 WQLTVFPGRLVHGG-PVEEPYRLAPEDELKAYAFPVSHQRVWREY 358
>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
Length = 287
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 9/226 (3%)
Query: 9 EILAFQESILTWYKQNARQLPWRE--------SNNPYYVWISEVMLQQTQVKTVLPYYEK 60
E+ AF+ S+L+WY Q R LPWR Y VW+SEVMLQQTQV TV+ YY
Sbjct: 14 EVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTG 73
Query: 61 FIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS- 119
+++ +PT++D A + + V ++W GLGYYSR R Q G R+V+E+ GG +PR + L
Sbjct: 74 WMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQL 133
Query: 120 IKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMS 179
+ GVG YTAGA+ASI + T VDGNV R+ R+ I D S L + +
Sbjct: 134 LPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVD 193
Query: 180 QTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENF 225
+FNQA M+LGATVC + P C +CP+ C A + E
Sbjct: 194 PARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQL 239
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVARVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVRRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVQRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVANKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRATLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 122/217 (56%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P ++GNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILNGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PKC CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVK 228
DLGA +C PK CPL C A NN+ +P K
Sbjct: 186 DLGAMICTRSKPKHSLCPLQNGCIAAANNSWALYPGK 222
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 2/207 (0%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
F +ILT++ + R PWR + +PY + I+E++L++T V Y+KF Y +D
Sbjct: 12 FVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDIL 71
Query: 73 FDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
+ + K + +G + R + R VI +GG VPR++K +L + GVG YT A+
Sbjct: 72 KTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAV 131
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
+ + VD N R+ R F + K ++E L + R+FN LM
Sbjct: 132 MCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWE-LAETLVPGGKCRDFNLGLM 190
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYK 218
D A +C + PKC++C +S+ CS Y+
Sbjct: 191 DFSAIICAPRKPKCEKCGMSKLCSYYE 217
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRV 92
NP+ + I+ V+ Q V ++ + Y T D+ + + + +G Y ++
Sbjct: 31 RNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKA 90
Query: 93 RNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYG 152
RN Q C +I+++ GEVPRD+ +L+ + GVG TA + S+ + +P AVD +V R+
Sbjct: 91 RNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSK 150
Query: 153 RL-FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLS 211
RL F DD K + + + + S T+ R ++ G C ++P+C CPL
Sbjct: 151 RLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHR-----MIFFGRYHCKAQSPQCPSCPLL 205
Query: 212 RFCSAYK 218
C K
Sbjct: 206 HLCREGK 212
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRV 92
NP+ + I+ V+ Q V ++ + Y T D+ + + + +G Y ++
Sbjct: 31 RNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKA 90
Query: 93 RNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYG 152
RN Q C +I+++ GEVPRD+ +L+ + GVG TA + S + +P AVD +V R+
Sbjct: 91 RNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSK 150
Query: 153 RL-FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLS 211
RL F DD K + + + + S T+ R ++ G C ++P+C CPL
Sbjct: 151 RLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHR-----MIFFGRYHCKAQSPQCPSCPLL 205
Query: 212 RFCSAYK 218
C K
Sbjct: 206 HLCREGK 212
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 17 ILTWYKQNARQLPWRESN--NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFD 74
ILT ++N P E N +P+ + I+ ++ Q T + + K YP A
Sbjct: 9 ILTRLRENNPH-PTTELNFSSPFELLIAVLLSAQA---TDVSVNKATAKLYPVANTPAAM 64
Query: 75 TE---DNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGA 130
E + V + +G Y S+ N CR ++EQ GEVP D+ L ++ GVG TA
Sbjct: 65 LELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANV 124
Query: 131 LASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQAL 190
+ + + PT AVD ++FR+ R + GK E + K + + + L
Sbjct: 125 VLNTAFGWPTIAVDTHIFRVCNR-----TQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWL 179
Query: 191 MDLGATVCLFKNPKCKECPLSRFC 214
+ G C+ + P+C C + C
Sbjct: 180 ILHGRYTCIARKPRCGSCIIEDLC 203
>pdb|1X51|A Chain A, Solution Structure Of The Nudix Domain From Human AG-
Specific Adenine Dna Glycosylase Alpha-3 Splice Isoform
Length = 155
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 250 KYLIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENL-----PFKVNLNEKCLGNVKH 304
+ L+ +RP +GLL+ + F S + Q + L + L P + + LG V H
Sbjct: 35 QILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPAT-HLRHLGEVVH 93
Query: 305 VFSHLKWNMDVYS----GTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKLFTKSKG 360
FSH+K VY G T+P + +T+ + A +KV++++ G
Sbjct: 94 TFSHIKLTYQVYGLALEGQTPVTTVPPGARW--LTQEEFHTAAVSTAMKKVFRVYQGQSG 151
>pdb|4E9G|A Chain A, Structure Of The Glycosylase Domain Of Mbd4 Bound To
Thymine Containing Dna
pdb|4E9H|A Chain A, Structure Of Glycosylase Domain Of Mbd4 Bound To 5hmu
Containing Dna
Length = 161
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 84
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 85 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126
>pdb|4E9E|A Chain A, Structure Of The Glycosylase Domain Of Mbd4
pdb|4E9F|A Chain A, Stucture Of The Glycosylase Domain Of Mbd4 Bound To Ap
Site Containing Dna
Length = 161
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 84
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 85 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126
>pdb|4DK9|A Chain A, Crystal Structure Of Mbd4 Catalytic Domain Bound To Abasic
Dna
Length = 157
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 31 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 86
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 87 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 128
>pdb|4EA4|A Chain A, Structure Of The Glycosylase Domain Of Mbd4 Bound To
5hmu-Containing Dna
Length = 155
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 84
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 85 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126
>pdb|4EA5|A Chain A, Structure Of The Glycoslyase Domain Of Mbd4 Bound To A
5hmu Containing Dna
Length = 160
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 84
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 85 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126
>pdb|3IHO|A Chain A, The C-Terminal Glycosylase Domain Of Human Mbd4
Length = 138
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
++P+ + I+ + L +T K +P KF++ YP+ + +V ++ + LG Y
Sbjct: 18 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLY---- 73
Query: 94 NFQAGCRQVIEQFGGE-VPRDKKQLLSIKGVGDYTAGALASICYN 137
+ +A + I +F E + + K + + G+G Y + C N
Sbjct: 74 DLRA---KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVN 115
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 118 LSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVY 170
L + + TA A +P +DG+ FE+E ++ +G T +VY
Sbjct: 18 LYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSIVY 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,825,861
Number of Sequences: 62578
Number of extensions: 452252
Number of successful extensions: 1153
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 31
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)