BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9547
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis
(strain 168) GN=yfhQ PE=2 SV=1
Length = 369
Score = 310 bits (795), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 148/358 (41%), Positives = 227/358 (63%), Gaps = 7/358 (1%)
Query: 1 MASNLSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEK 60
+ L K+I F++ +++W+++ R LPWRE +PY VW+SEVMLQQT+V+TV+PY+ +
Sbjct: 4 LEDKLKQKDIQQFRDDLISWFEREQRVLPWREDQDPYKVWVSEVMLQQTRVETVIPYFLR 63
Query: 61 FIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSI 120
F++ +PT++ A E+ VLK WEGLGYYSRVRN Q+ ++V +++GG VP D+K +
Sbjct: 64 FVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAVKEVKQEYGGIVPPDEKDFGGL 123
Query: 121 KGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQ 180
KGVG YT GA+ SI YN P PAVDGNV R+ R+ I DDI+K KT+ ++E + +S+
Sbjct: 124 KGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSIWDDIAKPKTRTIFEDAIRAFISK 183
Query: 181 TNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLL 240
EFNQ LM+LGA +C K+P C CP+ + CSA++ T PVK K K +
Sbjct: 184 EKPSEFNQGLMELGALICTPKSPSCLLCPVQQHCSAFEEGTERELPVKSKKKKPGIKTMA 243
Query: 241 TVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESD----TPYTSQVEFLSENLPFKVNLNE 296
+V+ + + I KRP+ GLL+N + F + E+ T + FL + ++++
Sbjct: 244 AIVLTDEDGQVYIHKRPSKGLLANLWEFPNLETQKGIKTEREQLIAFLENEYGIQADISD 303
Query: 297 KCLGNVKHVFSHLKWNMDVYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKL 354
G V+HVF+HL WN+ V+ G K K + K +T+ +++++AFPV +QK+WK+
Sbjct: 304 -LQGVVEHVFTHLVWNISVFFG--KVKQVSDTSKLKKVTKEELEQFAFPVSHQKIWKM 358
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 203/410 (49%), Gaps = 61/410 (14%)
Query: 9 EILAFQESILTWYKQNARQLPWR-----ESN---NPYYVWISEVMLQQTQVKTVLPYYEK 60
++ AF+ ++L+WY Q R LPWR E+N Y VW+SEVMLQQTQV TV+ YY +
Sbjct: 63 DVTAFRRNLLSWYDQEKRDLPWRKRVKEETNLDRRAYAVWVSEVMLQQTQVATVIDYYTR 122
Query: 61 FIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS- 119
+++ +PT++D A + + V ++W GLGYYSR R Q G R+V+E+ GG VPR + L
Sbjct: 123 WMQKWPTLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVVEELGGHVPRTAETLQQL 182
Query: 120 IKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMS 179
+ GVG YTAGA+ASI ++ T VDGNV R+ R+ I D + L + +
Sbjct: 183 LPGVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVRAIGADPTSSFVSHHLWDLAQQLVD 242
Query: 180 QTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYK--------------------- 218
+FNQA M+LGATVC + P C CP+ C A++
Sbjct: 243 PARPGDFNQAAMELGATVCTPQRPLCNHCPVQSLCRAHQRVGQGRLSALPGSPDIEECAL 302
Query: 219 -----------------NNTIENFPVKLGKTKVKDVFLLTVVVK----TDTNKYLIQKRP 257
N + NFP K + ++ + T VV+ T L+ +RP
Sbjct: 303 NTRQCQLCLPSTNPWDPNMGVVNFPRKASRRPPREEYSATCVVEQPGATGGPLILLVQRP 362
Query: 258 TTGLLSNFYMFLSFESDTPYTSQVEFLSENL-----PFKVNLNEKCLGNVKHVFSHLKWN 312
+GLL+ + F S + Q + L + L P + LG V HVFSH+K
Sbjct: 363 NSGLLAGLWEFPSVTLEPSGQHQHKALLQELQHWSAPLPTTPLQH-LGEVIHVFSHIKLT 421
Query: 313 MDVYSGTAKEKTIPANKTY---KLITETQMKKYAFPVPYQKVWKLFTKSK 359
VYS A E PA+ T + +T + + A +KV++++ + +
Sbjct: 422 YQVYS-LALEGQTPASTTLPGARWLTWEEFRNAAVSTAMKKVFRVYEEHR 470
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 183/365 (50%), Gaps = 57/365 (15%)
Query: 9 EILAFQESILTWYKQNARQLPWR-----ESNN---PYYVWISEVMLQQTQVKTVLPYYEK 60
++ AF+ ++L+WY Q R LPWR E+N+ Y VW+SEVMLQQTQV TV+ YY +
Sbjct: 63 DVTAFRSNLLSWYDQEKRDLPWRNLAKEEANSDRRAYAVWVSEVMLQQTQVATVIDYYTR 122
Query: 61 FIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS- 119
+++ +P ++D A + + V ++W GLGYYSR R Q G R+V+E+ GG +PR + L
Sbjct: 123 WMQKWPKLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQL 182
Query: 120 IKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMS 179
+ GVG YTAGA+ASI ++ T VDGNV R+ R+ I D + L + +
Sbjct: 183 LPGVGRYTAGAIASIAFDQVTGVVDGNVLRVLCRVRAIGADPTSTLVSHHLWNLAQQLVD 242
Query: 180 QTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKN-------------------- 219
+FNQA M+LGATVC + P C CP+ C AY+
Sbjct: 243 PARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLCRAYQRVQRGQLSALPGRPDIEECAL 302
Query: 220 NT------------------IENFPVKLGKTKVKDVFLLTVVVKTDTN----KYLIQKRP 257
NT + NFP K + ++ + T VV+ L+ +RP
Sbjct: 303 NTRQCQLCLTSSSPWDPSMGVANFPRKASRRPPREEYSATCVVEQPGAIGGPLVLLVQRP 362
Query: 258 TTGLLSNFYMFLSFESDTPYTSQVEFLSENL-----PFKVNLNEKCLGNVKHVFSHLKWN 312
+GLL+ + F S + Q + L + L P + + LG V H+FSH+K
Sbjct: 363 DSGLLAGLWEFPSVTLEPSEQHQHKALLQELQRWCGPLPA-IRLQHLGEVIHIFSHIKLT 421
Query: 313 MDVYS 317
VYS
Sbjct: 422 YQVYS 426
>sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1
Length = 378
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 175/307 (57%), Gaps = 15/307 (4%)
Query: 13 FQESILTWYKQNAR-QLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +S+L WY + R LPW+++ Y VW+SEVMLQQTQV TV+PY+E+FIKT+P I
Sbjct: 11 FAKSVLAWYDKFGRKHLPWQQNKTLYGVWLSEVMLQQTQVATVIPYFERFIKTFPNITAL 70
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A ++D VL +W GLGYY+R RN ++V ++F G P + +Q+ ++ GVG TAGA+
Sbjct: 71 ANASQDEVLHLWTGLGYYARARNLHKAAQKVRDEFNGNFPTNFEQVWALSGVGRSTAGAI 130
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S N P P +DGNV R+ R F +E + K + L + T +FNQA+M
Sbjct: 131 LSSVLNQPYPILDGNVKRVLARYFAVEGWSGEKKVENRLWALTEQVTPTTRVADFNQAMM 190
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKV--KDVFLLTVVVKTDTN 249
D+GA VC+ PKC CPL+ C AYKN E FP K K + K + L + +
Sbjct: 191 DIGAMVCMRTKPKCDLCPLNIDCLAYKNTNWEKFPAKKPKKAMPEKTTYFL---ILSKNG 247
Query: 250 KYLIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENLPFKVNLNEKCLGNVKHVFSHL 309
K +++R +GL + F FE +S + FL++ KV ++ + +H FSH
Sbjct: 248 KVCLEQRENSGLWGGLFCFPQFEDK---SSLLHFLAQE---KVTHYQE-WPSFRHTFSHF 300
Query: 310 KWNMDVY 316
++D++
Sbjct: 301 --HLDIH 305
>sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1
SV=1
Length = 546
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 193/408 (47%), Gaps = 63/408 (15%)
Query: 9 EILAFQESILTWYKQNARQLPWRE--------SNNPYYVWISEVMLQQTQVKTVLPYYEK 60
E+ AF+ S+L+WY Q R LPWR Y VW+SEVMLQQTQV TV+ YY
Sbjct: 89 EVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTG 148
Query: 61 FIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS- 119
+++ +PT++D A + + V ++W GLGYYSR R Q G R+V+E+ GG +PR + L
Sbjct: 149 WMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQL 208
Query: 120 IKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMS 179
+ GVG YTAGA+ASI + T VDGNV R+ R+ I D S L + +
Sbjct: 209 LPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVD 268
Query: 180 QTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKN-------------------- 219
+FNQA M+LGATVC + P C +CP+ C A +
Sbjct: 269 PARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVEE 328
Query: 220 ---NT------------------IENFPVKLGKTKVKDVFLLTVVVKTD---TNKYLIQK 255
NT + NFP K + ++ T V++ + L+ +
Sbjct: 329 CAPNTGQCHLCLPPSEPWDQTLGVVNFPRKASRKPPREESSATCVLEQPGALGAQILLVQ 388
Query: 256 RPTTGLLSNFYMFLSFESDTPYTSQVEFLSENL-----PFKVNLNEKCLGNVKHVFSHLK 310
RP +GLL+ + F S + Q + L + L P + + LG V H FSH+K
Sbjct: 389 RPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPAT-HLRHLGEVVHTFSHIK 447
Query: 311 WNMDVYSGTAKEKTIPANKT---YKLITETQMKKYAFPVPYQKVWKLF 355
VY G A E P + +T+ + A +KV++++
Sbjct: 448 LTYQVY-GLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVY 494
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 9/304 (2%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ + PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQVTTVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GGE P+ ++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGEFPQTFAEIAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + TL + FNQA+M
Sbjct: 126 LSLALGKHYPILDGNVKRVLARCYAVSGWPGKKEVENTLWTLSEQVTPARGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKY 251
DLGA VC PKC CPL C A + + +P K K + + ++++ + +
Sbjct: 186 DLGAMVCTRSKPKCTLCPLQNGCIAAAHESWSRYPGKKPKQTLPERTGYFLLLQHNQEIF 245
Query: 252 LIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENLPFKVNLNEKCLGNVKHVFSHLKW 311
L Q RP +GL Y F F + E+L++ NL + L +H FSH
Sbjct: 246 LAQ-RPPSGLWGGLYCFPQFAREDELR---EWLAQRHVNADNLTQ--LNAFRHTFSHF-- 297
Query: 312 NMDV 315
++D+
Sbjct: 298 HLDI 301
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 201 bits (511), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 163/307 (53%), Gaps = 15/307 (4%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F +L WY + R+ LPW+ PY VW+SEVMLQQTQV TV+PY+E+F+ +PT+ D
Sbjct: 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
A D VL +W GLGYY+R RN +QV GG+ P +++ ++ GVG TAGA+
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ P +DGNV R+ R + + K + + +L + FNQA+M
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKY 251
DLGA +C PKC CPL C A NN+ +P K K + + ++++ + ++
Sbjct: 186 DLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPKQTLPERTGYFLLLQHE-DEV 244
Query: 252 LIQKRPTTGLLSNFYMFLSF---ESDTPYTSQVEFLSENLPFKVNLNEKCLGNVKHVFSH 308
L+ +RP +GL Y F F ES + +Q + ++NL L +H FSH
Sbjct: 245 LLAQRPPSGLWGGLYCFPQFADEESLRQWLAQRQIAADNL--------TQLTAFRHTFSH 296
Query: 309 LKWNMDV 315
++D+
Sbjct: 297 F--HLDI 301
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 10/301 (3%)
Query: 11 LAFQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIK 69
L F ++IL WY R+ LPW+ NPY WISE+MLQQTQVKTV+PYY KFIK +P I
Sbjct: 4 LVFYQTILNWYHHFGRKTLPWQIKKNPYKTWISEIMLQQTQVKTVIPYYCKFIKRFPNID 63
Query: 70 DFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAG 129
+ D++L +W GLGYY+R RN + + ++F G P +++ + G+G TAG
Sbjct: 64 TLSDSPLDSILNLWSGLGYYTRARNIYKTAKILKQKFNGIFPNSYAEIIKLPGIGKSTAG 123
Query: 130 ALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKT-MSQTNAREFNQ 188
A+ S +N+ + +DGN+ R+ R + I + +K K++++T+ S T + TN +FNQ
Sbjct: 124 AILSFGFNLYSCILDGNIKRVLIRYYSININ-NKYIEKLLWKTIESITPIYHTN--KFNQ 180
Query: 189 ALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDT 248
AL+D+GA +CL NPKC CPL C +Y NN + K K + ++
Sbjct: 181 ALIDIGALICLKSNPKCNICPLKSTCKSYLNNKLFQINCKKNKKHIIPKTKYWFLILQYK 240
Query: 249 NKYLIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENLPFKVNLNEKCLGNVKHVFSH 308
N ++KR G+ + F F S ++ + + K+N+ L KH SH
Sbjct: 241 NYIFLEKRQNLGIWKKLFCFPQFIRQNDILSWIQKNNTKIK-KINI----LNEFKHKLSH 295
Query: 309 L 309
L
Sbjct: 296 L 296
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 194/401 (48%), Gaps = 71/401 (17%)
Query: 9 EILAFQESILTWYKQNARQLPWRE-------SNNP-----------YYVWISEVMLQQTQ 50
E+ F+ES++ +Y + R LPWR+ ++P Y V +SE+MLQQT+
Sbjct: 17 EVERFRESLIQFYDKTKRILPWRKKECIPPSEDSPLEDWEQPVQRLYEVLVSEIMLQQTR 76
Query: 51 VKTVLPYYEKFIKTYPTIKDFAFDTEDN--VLKMWEGLGYYSRVRNFQAGCRQVIEQFGG 108
V+TV YY K+++T PT+K A + E N V+ +W G+G+Y+R + C+ + +
Sbjct: 77 VETVKRYYTKWMETLPTLKSCA-EAEYNTQVMPLWSGMGFYTRCKRLHQACQHLAKLHPS 135
Query: 109 EVPRDKKQLL-SIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTK 167
E+PR + I GVG YTAGA+ SI + PT VDGNV R+ R I D SKGK
Sbjct: 136 EIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQPTGIVDGNVIRVLSRALAIHSDCSKGKAN 195
Query: 168 VVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYK-------NN 220
+ L ++ + +FNQALM+LGA C ++P+C CP+S C AY+ N
Sbjct: 196 ALIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKAYQEQNVIRDGN 255
Query: 221 TIE---------------------------NFPVKLGKTKVKDVFLLTVVV-KTDTNK-- 250
TI+ +PV KTK ++ L V+ KTD +
Sbjct: 256 TIKYDIEDVPCNICITDIPSKEDLQNWVVARYPVHPAKTKQREERALVVIFQKTDPSTKE 315
Query: 251 --YLIQKRPTTGLLSNFYMFLSFE---SDTPYTSQVEFLSENLPFKVNLNEKCL------ 299
+LI+KRP+ GLL+ + F + E P EF + N + +
Sbjct: 316 KFFLIRKRPSAGLLAGLWDFPTIEFGQESWPKDMDAEFQKSIAQWISNDSRSLIKKYQSR 375
Query: 300 GNVKHVFSHLKWNMDVYSGTAKEKTIPANKTYKLITETQMK 340
G H+FSH++ V+ A + N+ + I+++ ++
Sbjct: 376 GRYLHIFSHIRKTSHVFYAIASPDIV-TNEDFFWISQSDLE 415
>sp|F4JRF4|MUTYH_ARATH A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH
PE=3 SV=1
Length = 630
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 177/357 (49%), Gaps = 53/357 (14%)
Query: 6 SAKEILAFQESILTWYKQNARQLPWR-------ESNNPYYVWISEVMLQQTQVKTVLPYY 58
S E + +L WY N R LPWR + Y VW+SE+MLQQT+V+TV+ YY
Sbjct: 124 SENETQKIRMGLLDWYDVNKRDLPWRNRRSESEKERRAYEVWVSEIMLQQTRVQTVMKYY 183
Query: 59 EKFIKTYPTIKDFAFDTEDNVL-------------------KMWEGLGYYSRVRNFQAGC 99
+++++ +PTI D + +N++ +MW GLGYY R R G
Sbjct: 184 KRWMQKWPTIYDLGQASLENLIVSRSRELSFLRGNEKKEVNEMWAGLGYYRRARFLLEGA 243
Query: 100 RQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIED 159
+ V+ G P L+ +KG+G YTAGA+ASI +N P VDGNV R+ RL I
Sbjct: 244 KMVVAGTEG-FPNQASSLMKVKGIGQYTAGAIASIAFNEAVPVVDGNVIRVLARLKAISA 302
Query: 160 DISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAY-- 217
+ T + L ++ + + +FNQ+LM+LGAT+C P C CP+S C A+
Sbjct: 303 NPKDRLTARNFWKLAAQLVDPSRPGDFNQSLMELGATLCTVSKPSCSSCPVSSQCRAFSL 362
Query: 218 --KNNTIE--NFPVKLGKTKVKDVFLLTVVVKTDT-------NKYLIQKRPTTGLLSNFY 266
+N TI ++P K+ K K + F V++ ++++ KRP GLL+ +
Sbjct: 363 SEENRTISVTDYPTKVIKAKPRHDFCCVCVLEIHNLERNQSGGRFVLVKRPEQGLLAGLW 422
Query: 267 MF----LSFESDTPYTSQV--EFLSENLPFKVNLNEKC-------LGNVKHVFSHLK 310
F L+ E+D+ +L E F V L + C LG H+F+H++
Sbjct: 423 EFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTIVSREELGEFVHIFTHIR 479
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 156/300 (52%), Gaps = 11/300 (3%)
Query: 13 FQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDF 71
F + +L WY +N R+ LPW+ + Y VWISE+MLQQT VK+ +PY++KFI +P IK
Sbjct: 6 FSQLVLNWYHKNGRKDLPWQINKTLYTVWISEIMLQQTTVKSAIPYFKKFILNFPNIKSL 65
Query: 72 AFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
D+VL +W GLGYY+R +N + + +++ G P ++ + G+G TAGA+
Sbjct: 66 NDSKLDDVLYLWSGLGYYNRAKNIYKSAQIIKKKYKGIFPDQFSNIIQLPGIGRSTAGAI 125
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
S+ N P +DGNV RI R + I + K + ++ N +FNQ +M
Sbjct: 126 LSLSLNFFYPILDGNVKRILVRYYGISGLLKDKKIEKKLWNIIESITPIHNTGKFNQGMM 185
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKY 251
D+GA++C+ PKC CPL + C A E +P+K K + +++K + N +
Sbjct: 186 DIGASICISIKPKCTICPLKKECIAQIEKKWEKYPLKNIKKTLPQKISWFIIIKHENNFW 245
Query: 252 LIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENLPFKVNLNEKCLGNVK--HVFSHL 309
L +K + + F F++ + +L E K+N+N C + H FSH
Sbjct: 246 L-KKNTEQEIWKELFCFPKFKNK---EEALIWLKEK---KININT-CENMISFFHKFSHF 297
>sp|Q8K926|MUTY_BUCAP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mutY PE=3 SV=1
Length = 347
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 158/301 (52%), Gaps = 6/301 (1%)
Query: 10 ILAFQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTI 68
I F + IL WY N R+ LPW++ Y VWISE+MLQQT VKT +PY++ FI +P I
Sbjct: 3 IYVFSQLILNWYHINGRKNLPWKKDKTLYKVWISEIMLQQTTVKTAIPYFKNFISRFPNI 62
Query: 69 KDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTA 128
+ D++L +W GLGYY R N + + E+F + P L+ + G+G TA
Sbjct: 63 QSLNQSKLDDILCLWSGLGYYKRAENIYKTVKIIKEEFQEKFPTGFSDLIKLPGIGRSTA 122
Query: 129 GALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQ 188
GA+ S+ + P ++GNV RI R + I +++ K + L+ N FNQ
Sbjct: 123 GAILSLSLDYFFPILEGNVKRILMRYYGIIGYVTEKKIEQKLWYLIELITPIHNTGSFNQ 182
Query: 189 ALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDT 248
+MD+GA +C KNPKC CPL + C AYK +P+K K + + VV+K
Sbjct: 183 GIMDIGALICTPKNPKCNLCPLIQKCIAYKEKNWIKYPLKKKKKIILEKKSWFVVIKYQ- 241
Query: 249 NKYLIQKRPTTGLLSNFYMFLSFESDTPYTSQVEFLSENLPFKVNLNEKCLGNVKHVFSH 308
N++ I+K + N + F +F++ +E+L +N ++K + + H FSH
Sbjct: 242 NQFWIEKNTEKKIWKNLFCFPNFDTK---IKTIEWLKKNKINIDKKHKK-IQSFYHKFSH 297
Query: 309 L 309
Sbjct: 298 F 298
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 2/207 (0%)
Query: 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFA 72
F +ILT++ + R PWR + +PY + I+E++L++T V Y+KF Y +D
Sbjct: 12 FVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDIL 71
Query: 73 FDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGAL 131
+ + K + +G + R + R VI +GG VPR++K +L + GVG YT A+
Sbjct: 72 KTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAV 131
Query: 132 ASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALM 191
+ + VD N R+ R F + K ++E L + R+FN LM
Sbjct: 132 MCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWE-LAETLVPGGKCRDFNLGLM 190
Query: 192 DLGATVCLFKNPKCKECPLSRFCSAYK 218
D A +C + PKC++C +S+ CS Y+
Sbjct: 191 DFSAIICAPRKPKCEKCGMSKLCSYYE 217
>sp|A0R567|MUTY_MYCS2 A/G-specific adenine glycosylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mutY PE=3 SV=1
Length = 293
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 3/196 (1%)
Query: 17 ILTWYKQNARQLPWRESN-NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDT 75
+L+WY R LPWR + + + +SE MLQQT V V P + +I+ +PT A
Sbjct: 8 LLSWYDHARRDLPWRRPGVSAWQILVSEFMLQQTPVSRVEPIWSAWIERWPTASATAAAG 67
Query: 76 EDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC 135
VL+ W LGY R + + ++ VPRD LL++ G+G YTA A+A
Sbjct: 68 PAEVLRAWGKLGYPRRAKRLHECAVVIASEYDDVVPRDVDTLLTLPGIGAYTARAVACFA 127
Query: 136 YNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGA 195
Y P VD NV R+ R D + + + + T A F+ ALM+LGA
Sbjct: 128 YQASVPVVDTNVRRVVTRAVHGAADAPASTRDL--DMVAALLPPDTTAPTFSAALMELGA 185
Query: 196 TVCLFKNPKCKECPLS 211
TVC ++P+C CPLS
Sbjct: 186 TVCTARSPRCGICPLS 201
>sp|P46230|MUTY_AERHY A/G-specific adenine glycosylase (Fragment) OS=Aeromonas hydrophila
GN=mutY PE=3 SV=1
Length = 99
Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 5 LSAKEILAFQESILTWYKQNARQ-LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIK 63
+S + F IL WY+ + R+ LPW++ PY VW+SE+MLQQTQV TV+PYY++F+
Sbjct: 1 MSNSDNTTFATRILDWYQIHGRKTLPWQQDKTPYRVWVSEIMLQQTQVATVIPYYQRFMA 60
Query: 64 TYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQV 102
+P ++ A D VL W GLGYY+R RN +Q+
Sbjct: 61 RFPDVQALAQAPIDEVLHHWTGLGYYARARNLHKAAQQI 99
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRV 92
+NP+ + ++ + Q V + + Y +D+ + + + + +G Y ++
Sbjct: 28 SNPFELVVAVALSAQCTDALVNRVTKTLFQKYKRPEDYLAVPLEELQQDIKSIGLYRNKA 87
Query: 93 RNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYG 152
+N Q + +IE +GGEVPRD+ +L+ + GVG TA + S+ + +P AVD +V R+
Sbjct: 88 KNIQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSK 147
Query: 153 RLFEIEDDISKGKTKVVYETLVSKTMSQTNARE----FNQALMDLGATVCLFKNPKCKEC 208
RL I + K V+ V KT+ + +E + L+ G C ++P+C EC
Sbjct: 148 RL-----GICRWKDSVLE---VEKTLMRKVPKEDWSVTHHRLIFFGRYHCKAQSPRCAEC 199
Query: 209 PLSRFC 214
PL C
Sbjct: 200 PLLSLC 205
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 35 NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRVR 93
+P+ V IS V+ Q+T+ + +K + Y T ++ A +++ + + G Y +
Sbjct: 21 DPFRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQKAE 80
Query: 94 NFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGR 153
R ++E++GG VP ++LL + GVG TA + + + P AVD +V RI R
Sbjct: 81 RIVEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKKPALAVDTHVHRISNR 140
Query: 154 LFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRF 213
L + K +T E + K + + N ++++ G +C +NP C+EC L
Sbjct: 141 LGWV-----KTRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLKNH 195
Query: 214 CSAYKNN 220
C Y+
Sbjct: 196 CEFYRRR 202
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 38 YVWISEVML--QQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRVRN 94
+ + VML Q T + L F +TY T + ED + K + +G + S+ +N
Sbjct: 30 FTLLVAVMLSAQATDISVNLATKSLF-ETYDTTEKILELGEDGLKKYIKSIGLFNSKAKN 88
Query: 95 FQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRL 154
A C+ +I + VP D K+L+ + GVG TA + + + +PT AVD +VFR+ R+
Sbjct: 89 IIALCKILISNYQSSVPNDFKELIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRI 148
Query: 155 FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFC 214
+++G + + E + + +++ + L+ G +C + P C CP+ +C
Sbjct: 149 -----GLARGNSPEIVEKELLQIINEKWLTHAHHWLILHGRYICKARKPDCDICPIKEYC 203
Query: 215 SAYKNNTI 222
Y + I
Sbjct: 204 EYYNSPII 211
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 59 EKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQL 117
+ +TY T + E+ + K + +G + S+ +N A C+ +I+ + +P D K+L
Sbjct: 52 KHLFETYNTPEKILALGEEGLKKYIKSIGLFNSKAKNIIASCQILIKNYQASIPNDFKEL 111
Query: 118 LSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKT 177
+ + GVG TA + + + +PT AVD +VFR+ R+ ++KG T V+ E + +
Sbjct: 112 VKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRI-----GLAKGNTTVIVEKELLQI 166
Query: 178 MSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKN 219
+ + + L+ G +C + P C+ C + +C Y N
Sbjct: 167 IDEKWLTHAHHWLVLHGRYICKARKPSCRICHIKEYCEYYIN 208
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 17 ILTWYK-QNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFI---KTYPTIKDFA 72
ILT + QN + N+P+ + I+ ++ Q K V EK T I D
Sbjct: 9 ILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLG 68
Query: 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132
D + +K GL + S+ N CR +IE+ GEVP +++ L ++ GVG TA +
Sbjct: 69 LDGLKSYIKTI-GL-FNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVL 126
Query: 133 SICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMD 192
+ + PT AVD ++FR+ R + + GK V E + K + + + L+
Sbjct: 127 NTAFGHPTIAVDTHIFRVCNR-----TNFAAGKDVVKVEEKLLKVVPNEFKVDVHHWLIL 181
Query: 193 LGATVCLFKNPKCKECPLSRFC 214
G C+ + P+C C + C
Sbjct: 182 HGRYTCIARKPRCGSCIIEDLC 203
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 73 FDTEDNVLKMWE-GLGYY--------SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGV 123
+DT + +L++ E GL Y S+ +N A C+ +I + VP D K L+ + GV
Sbjct: 58 YDTPEKILELGEEGLKKYIKSIGLFNSKAKNIIALCKILISNYQASVPNDFKALIKLPGV 117
Query: 124 GDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNA 183
G TA + + + +PT AVD +VFR+ R+ ++KG T + E + + +
Sbjct: 118 GRKTANVVLNCLFGMPTMAVDTHVFRVANRI-----GLAKGDTPEIVENELLQIIDTKWL 172
Query: 184 REFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKN 219
+ L+ G +C + P C CP+ +C Y N
Sbjct: 173 THAHHWLILHGRYICKARKPDCDICPIKEYCDYYFN 208
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRV 92
P + ++ ++ Q + V + YP A+ + ++ G++ ++
Sbjct: 36 QTPVQLLVATILSAQCTDERVNKVTPALFQRYPDANALAYGDRQEIEELIHSTGFFRNKA 95
Query: 93 RNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNI-PTPAVDGNVFRIY 151
+N Q CR+++E+F GEVP+ ++LL++ GV TA + + + I VD +V R+
Sbjct: 96 KNIQGACRKIVEEFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLS 155
Query: 152 GRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLS 211
RL ++K + E + K + Q + F+ ++ G VC + P C EC L+
Sbjct: 156 QRL-----GLTKATDPIRIERDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLCGECQLA 210
Query: 212 RFCSAYKNN 220
C + + +
Sbjct: 211 HLCPSAQAS 219
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 59 EKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQL 117
+ +TY T + F E+ + K + +G + S+ +N A C+ +I+ + +P + K+L
Sbjct: 52 KHLFETYNTPEKFLELGEEGLKKYIKSIGLFNSKAKNIIALCQILIKNYQTSIPNNFKEL 111
Query: 118 LSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKT 177
+ + GVG TA + + + +PT AVD +VFR+ R+ ++KG T + E + +
Sbjct: 112 VKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRI-----GLAKGNTAAIVEKELLQI 166
Query: 178 MSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKN 219
+ + + L+ G +C + P C CP+ +C Y N
Sbjct: 167 IDEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEYYIN 208
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 5 LSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT 64
L +K + A E + Q +L WR N + + ++ ++ Q K+V
Sbjct: 4 LDSKGVHAVFEQLHAANPQPQGELHWR---NTFTLLVAVLLSAQATDKSVNKATAALFDV 60
Query: 65 YPTIKDFAFDTEDNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGV 123
T + E+ + + Y ++ R A ++IE+F +VP D L S+ GV
Sbjct: 61 ADTPQAMLALGEERLCSYIRTINLYPTKARRIIALSAELIERFAAQVPCDAHALESLPGV 120
Query: 124 GDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNA 183
G TA + ++ + IPT AVD ++ R R+ +S G+T E + +
Sbjct: 121 GHKTANVVLNMGFGIPTIAVDTHILRTAPRI-----GLSSGRTPRAVE----RDLLVVTP 171
Query: 184 REF----NQALMDLGATVCLFKNPKCKECPLSRFCSAYKNN 220
REF + ++ G C + P+C EC L C KNN
Sbjct: 172 REFRMHAHHWILLHGRYTCTARRPRCTECCLRDLCC--KNN 210
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 17 ILTWYKQNARQLPWRESN--NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFD 74
ILT ++N P E N +P+ + I+ ++ Q T + + K YP A
Sbjct: 9 ILTRLRENNPH-PTTELNFSSPFELLIAVLLSAQA---TDVSVNKATAKLYPVANTPAAM 64
Query: 75 TE---DNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGA 130
E + V + +G Y S+ N CR ++EQ GEVP D+ L ++ GVG TA
Sbjct: 65 LELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANV 124
Query: 131 LASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQAL 190
+ + + PT AVD ++FR+ R + GK E + K + + + L
Sbjct: 125 VLNTAFGWPTIAVDTHIFRVCNR-----TQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWL 179
Query: 191 MDLGATVCLFKNPKCKECPLSRFC 214
+ G C+ + P+C C + C
Sbjct: 180 ILHGRYTCIARKPRCGSCIIEDLC 203
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 17 ILTWYKQNARQLPWRESN--NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFD 74
ILT ++N P E N +P+ + I+ ++ Q T + + K YP A
Sbjct: 9 ILTRLRENNPH-PTTELNFSSPFELLIAVLLSAQA---TDVSVNKATAKLYPVANTPAAM 64
Query: 75 TE---DNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGA 130
E + V + +G Y S+ N CR ++EQ GEVP D+ L ++ GVG TA
Sbjct: 65 LELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANV 124
Query: 131 LASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQAL 190
+ + + PT AVD ++FR+ R + GK E + K + + + L
Sbjct: 125 VLNTAFGWPTIAVDTHIFRVCNR-----TQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWL 179
Query: 191 MDLGATVCLFKNPKCKECPLSRFC 214
+ G C+ + P+C C + C
Sbjct: 180 ILHGRYTCIARKPRCGSCIIEDLC 203
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 86 LGYYSR-VRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVD 144
LG Y++ N C +++++GG+VP +++ L S+ GVG TA + ++ + T AVD
Sbjct: 84 LGLYNKKSSNILRTCEILLKRYGGKVPNNREDLESLPGVGRKTANVILNVIFKKKTIAVD 143
Query: 145 GNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPK 204
+VFR+ R+ +KG T + E + + + F+ + G +C + PK
Sbjct: 144 THVFRLCNRI-----GFAKGTTVLTVEKKLLNIVPEKFKLNFHAWFIMHGRYICTSRVPK 198
Query: 205 CKECPLSRFC 214
C +C +S C
Sbjct: 199 CSKCIISSLC 208
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
P+ + ++ V+ QT V +P A TE + ++ G+Y R
Sbjct: 42 ETPFELLVATVLSAQTTDVRVNAATPALFARFPDAHAMAAATEPELQELVRSTGFY---R 98
Query: 94 NFQAG----CRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFR 149
N + ++++ + GEVP + L+++ GVG TA + + P VD + R
Sbjct: 99 NKASAILRLSQELVGRHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDTHFGR 158
Query: 150 IYGRL-FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKEC 208
+ RL F E D KG+ + ++ + + R L+ G VC + P C C
Sbjct: 159 LARRLGFTDETDPGKGRARRGRPVPPARDWTMLSHR-----LIFHGRRVCHARRPACGRC 213
Query: 209 PLSRFCSAY 217
P++R+C +Y
Sbjct: 214 PIARWCPSY 222
>sp|P63540|END3_MYCTU Endonuclease III OS=Mycobacterium tuberculosis GN=nth PE=3 SV=1
Length = 245
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 6/191 (3%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
P + ++ ++ Q+ K V Y T +D+A + + G+Y
Sbjct: 38 TTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKA 97
Query: 94 NFQAGCRQ-VIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYG 152
G Q ++E+FGGEVP +L+++ GVG TA + + IP VD + R+
Sbjct: 98 ASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVR 157
Query: 153 RLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSR 212
R + + V E V + + + + ++ G VC + P C C L++
Sbjct: 158 RW-----RWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAK 212
Query: 213 FCSAYKNNTIE 223
C ++ E
Sbjct: 213 DCPSFGLGPTE 223
>sp|P63541|END3_MYCBO Endonuclease III OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=nth PE=3 SV=1
Length = 245
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 6/191 (3%)
Query: 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVR 93
P + ++ ++ Q+ K V Y T +D+A + + G+Y
Sbjct: 38 TTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKA 97
Query: 94 NFQAGCRQ-VIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYG 152
G Q ++E+FGGEVP +L+++ GVG TA + + IP VD + R+
Sbjct: 98 ASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVR 157
Query: 153 RLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSR 212
R + + V E V + + + + ++ G VC + P C C L++
Sbjct: 158 RW-----RWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAK 212
Query: 213 FCSAYKNNTIE 223
C ++ E
Sbjct: 213 DCPSFGLGPTE 223
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 105 QFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKG 164
++ +VP ++ +L S+ GVG TA + ++ +N T AVD +VFR+ R +KG
Sbjct: 99 KYNNKVPSNRTELESLPGVGRKTANIILNVLFNKNTIAVDTHVFRVANR-----TGFAKG 153
Query: 165 KTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFC 214
K + E + K + + + + G VC + KCK C + + C
Sbjct: 154 KNVIEVEKKMIKIVPSIFKKYVHFWFVLHGRYVCTARQLKCKTCFIEKLC 203
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 102 VIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDI 161
++ ++ VP ++ +L S+ GVG TA + +I + T AVD +VFR+ R +
Sbjct: 96 ILTKYNSIVPNNRIELESLPGVGRKTANIILNILFKKKTIAVDTHVFRVCNR-----TNF 150
Query: 162 SKGK-TKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFC 214
+KGK K+V E L+ K + F+ + G +C + KC C + + C
Sbjct: 151 AKGKNVKIVEEKLI-KVVPSIFKLNFHSWFILHGRYICTARKIKCNICLIFKLC 203
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Query: 37 YYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVL-KMWEGLGYY-SRVRN 94
Y V +S ++ QT+ + ++ T+ D T+D L K+ +G++ S+V+
Sbjct: 130 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTV-DSILQTDDATLGKLIYPVGFWRSKVKY 188
Query: 95 FQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAG-ALASICYNIPTPAVDGNVFRIYGR 153
+ + + +GG++P +L+++ GVG A A+A + AVD +V RI R
Sbjct: 189 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 154 L-FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSR 212
L + + S +T+ E + + + E N L+ G CL +P+C C
Sbjct: 249 LRWTKKATKSPEETRAALEEWLPRELWH----EINGLLVGFGQQTCLPVHPRCHACLNQA 304
Query: 213 FCSAYKN 219
C A +
Sbjct: 305 LCPAAQG 311
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 7/195 (3%)
Query: 15 ESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFD 74
E +L +NA + +P+ V IS ++ +T+ + +K K + D
Sbjct: 5 EILLKKLNKNAVVTEIAKDKDPFKVLISTIISARTKDEVTEEVSKKLFKEIKDVDDLLNI 64
Query: 75 TEDNVLKMWEGLGYYSRVRNFQAGCRQVI-EQFGGEVPRDKKQLLSIKGVGDYTAGALAS 133
E+ + + G+Y +++ E + G+VP ++LL + GVG TA + +
Sbjct: 65 DEEKLADLIYPAGFYKNKAKNLKKLAKILKENYNGKVPDSLEELLKLPGVGRKTANLVIT 124
Query: 134 ICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDL 193
+ +N VD +V RI R +EI D +T E + K + + + N L+
Sbjct: 125 LAFNKDGICVDTHVHRICNR-WEIVD----TETPEETEFELRKKLPKKYWKVINNLLVVF 179
Query: 194 GATVCLFKNPKCKEC 208
G +C K+ KC +C
Sbjct: 180 GREICSSKS-KCDKC 193
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Query: 32 ESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYP-------------TIKDFAFDTEDN 78
E +++ +S ++ QT+ + + K P TI+ A +
Sbjct: 44 EEERRFHILVSLLLSSQTKDEVTYEAMARLRKLLPESAATDGEARGGLTIERVANSDVKH 103
Query: 79 VLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGA-LASICYN 137
+ + + +G+++R +++ + G +PR+ K L+S+ G+G+ A ++ C
Sbjct: 104 INECIKKVGFHNRKAANLKKIAEILREKG--LPREMKDLISLPGIGNKMALLYMSHACNR 161
Query: 138 IPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETL--VSKTMSQTNAREFNQALMDLGA 195
+VD +V RI R+ + +T+ V T + + + + + N L+ G
Sbjct: 162 TVGISVDTHVHRISNRIGLV-------RTRDVESTRRELERVVPRKEWKTINNILVGFGQ 214
Query: 196 TVCLFKNPKCKECPLSRFC 214
T+C+ K P+C+EC + C
Sbjct: 215 TICVAKRPRCEECCIRGRC 233
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Query: 37 YYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY-SRVRNF 95
Y V +S ++ QT+ + ++ T++ +D + ++ +G++ ++V+
Sbjct: 118 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYI 177
Query: 96 QAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAG-ALASICYNIPTPAVDGNVFRIYGRL 154
+ + +++ G++P +L+++ GVG A A+A I AVD +V RI RL
Sbjct: 178 KQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANRL 237
Query: 155 FEIEDDISKGKTKVVYETL--VSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSR 212
+K TK ET + + + + E N L+ G +CL +P+C+ C
Sbjct: 238 -----RWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNKA 292
Query: 213 FCSAYKN 219
C A ++
Sbjct: 293 LCPAAQD 299
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 68 IKDFAFDTEDNVLKMWEGLGYYSRVRNF-QAGCRQVIEQFGGEVPRDKKQLLSIKGVGDY 126
++D E ++ K+ E +G+++R + + R + E+F G++P + L+++ GVG
Sbjct: 83 LEDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPK 142
Query: 127 TAGALASICYNIPTP-AVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNARE 185
SI +N VD +V RI L + ++ +T+ ++ + K + E
Sbjct: 143 MGYLCMSIAWNKTVGIGVDVHVHRICN-LLHWCNTKTEEQTRAALQSWLPKEL----WFE 197
Query: 186 FNQALMDLGATVCLFKNPKCKECPLSR--FC-SAYKNNTIENFPVKLGKTKVKDV 237
N L+ G T+CL + +C C LS C SA+K E + + K KVK +
Sbjct: 198 LNHTLVGFGQTICLPRGRRCDMCTLSSKGLCPSAFK----EKSGITITKRKVKTI 248
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 102 VIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGR-LFEIEDD 160
++E+F GEVP L ++ GVG TA + + IP VD + R+ R + E+D
Sbjct: 107 LVERFDGEVPSTMVDLFTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTAEED 166
Query: 161 ISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNN 220
V E V + + + + ++ G VC + P C C L++ C ++
Sbjct: 167 ------PVKVEHAVGELIERDQWTLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGLG 220
Query: 221 TIE 223
E
Sbjct: 221 PTE 223
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Query: 37 YYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVL-KMWEGLGYY-SRVRN 94
Y V +S ++ QT+ + ++ T+ D T+D+ L + +G++ S+V+
Sbjct: 123 YQVLLSLMLSSQTKDQVTAGAMQRLRARGLTV-DSILQTDDSTLGALIYPVGFWRSKVKY 181
Query: 95 FQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAG-ALASICYNIPTPAVDGNVFRIYGR 153
+ + +++ G++P +L+++ GVG A A+A + AVD +V RI R
Sbjct: 182 IKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 241
Query: 154 L-FEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSR 212
L + + S +T+ E + + + E N L+ G CL P+C+ C
Sbjct: 242 LRWTKKATKSPEETRRALEEWLPRELWS----EINGLLVGFGQQTCLPIRPRCQACLNRA 297
Query: 213 FCSAYKN 219
C A +
Sbjct: 298 LCPAARG 304
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 86 LGYYSRVRNF-QAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI----CYNIPT 140
+G+Y R + Q + + + F G++P L ++ GVG A + I C I
Sbjct: 117 VGFYKRKAVYLQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGI-- 174
Query: 141 PAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLF 200
AVD +V RI RL I+ + KT+ E L+ K+ Q N L+ G C
Sbjct: 175 -AVDTHVHRISNRLGWIKTSTPE-KTQKALEILLPKSEWQP----INHLLVGFGQMQCQP 228
Query: 201 KNPKCKECPLSRF 213
PKC C L RF
Sbjct: 229 VRPKCGTC-LCRF 240
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1
SV=1
Length = 380
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 86 LGYYSRVRNFQAGCRQV-IEQFGGEVPRDKKQLLSIKGVGDYTA--------GALASICY 136
+ +Y+R NF Q+ ++ F ++P D + +LS+ GVG G +A IC
Sbjct: 207 VSFYTRKANFIKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIAGIC- 265
Query: 137 NIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGAT 196
VD +V R+ +++ D I K KT + + + E N L+ G
Sbjct: 266 ------VDVHVHRLC-KMWNWVDPI-KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQL 317
Query: 197 VCLFKNPKCKECPLSRFCSAYKNNTIEN 224
+C+ + +C C + C+A IE+
Sbjct: 318 ICMARGKRCDLCLANDVCNARNEKLIES 345
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 16/197 (8%)
Query: 30 WRESNNPYYVWISEVMLQQTQVKTVLPYYE--KFIKTYPTIKDFAFDTEDNVLKMWEGLG 87
W + Y V + ++ Q T K V K +K D ED + ++ G
Sbjct: 25 WWPAETRYEVVVGAILTQNTSWKNVERAINNLKMEDLLEEVKILNVD-EDKLKELIRPAG 83
Query: 88 YYS-RVRNFQAGCRQVIEQFG-----GEVPRD----KKQLLSIKGVGDYTAGALASICYN 137
+Y+ + + + + ++E +G + +D + +LLSI GVG TA ++ +
Sbjct: 84 FYNLKAKRLKNVTKFIVENYGNTEEMAKTDKDTLILRAELLSINGVGKETADSILLYALD 143
Query: 138 IPTPAVDGNVFRIYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATV 197
+ VD R++ RL I + + K ++E + K + +E++ +++
Sbjct: 144 RESFVVDAYTKRMFSRLGVINEKAKYDEIKEIFEKNLPKDLEIY--KEYHALIVEHCKKF 201
Query: 198 CLFKNPKCKECPLSRFC 214
C K C CP+ FC
Sbjct: 202 CR-KKALCDNCPIKEFC 217
>sp|Q64512|PTN13_MOUSE Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus
GN=Ptpn13 PE=1 SV=2
Length = 2453
Score = 35.4 bits (80), Expect = 0.76, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 59 EKFIKTYPTIKDFAFDTEDN-----VLKMWEGLGY-YSRVRNFQAGCRQVIEQFGGEVPR 112
EK K P +KD++F TEDN + K GLG+ +SR N + EQ G + R
Sbjct: 1469 EKVAKQTPHVKDYSFVTEDNTFEVKLFKNSSGLGFSFSREDNL------IPEQINGSIVR 1522
Query: 113 DKK 115
KK
Sbjct: 1523 VKK 1525
>sp|Q6XZ79|SCRK1_MAIZE Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1
Length = 323
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 3 SNLSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFI 62
++L A EI A + L Y N R+ W +S + Q + V +F+
Sbjct: 150 AHLRAMEI-AKEAGALLSYDPNLREALWPSREEARTQILS--IWDQADIVKVSEVELEFL 206
Query: 63 KTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKG 122
+++D D V+K+W V GC+ F G VP K Q + G
Sbjct: 207 TGIDSVED------DVVMKLWRPTMKLLLVTLGDQGCKYYARDFHGAVPSFKVQQVDTTG 260
Query: 123 VGDYTAGAL 131
GD GAL
Sbjct: 261 AGDAFVGAL 269
>sp|A2WXV8|SCRK1_ORYSI Fructokinase-1 OS=Oryza sativa subsp. indica GN=FRK1 PE=1 SV=1
Length = 323
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 2 ASNLSAKEILAFQESILTWYKQNARQLPW--RESNNP--YYVWISEVMLQQTQVKTVLPY 57
+++L A EI A + L Y N R+ W RE +W +++ ++V+
Sbjct: 149 SAHLRAMEI-AKEAGALLSYDPNLREALWPSREEARTKILSIWDHADIVKVSEVEL---- 203
Query: 58 YEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQL 117
+F+ +++D D V+K+W V GC+ F G VP K Q
Sbjct: 204 --EFLTGIDSVED------DVVMKLWRPTMKLLLVTLGDQGCKYYARDFRGAVPSYKVQQ 255
Query: 118 LSIKGVGDYTAGAL 131
+ G GD GAL
Sbjct: 256 VDTTGAGDAFVGAL 269
>sp|Q0JGZ6|SCRK1_ORYSJ Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2
Length = 323
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 2 ASNLSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKF 61
+++L A EI A + L Y N R+ W +S + Q + V +F
Sbjct: 149 SAHLRAMEI-AKEAGALLSYDPNLREALWPSREEARTKILS--IWDQADIVKVSEVELEF 205
Query: 62 IKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIK 121
+ +++D D V+K+W V GC+ F G VP K Q +
Sbjct: 206 LTGIDSVED------DVVMKLWRPTMKLLLVTLGDQGCKYYARDFRGAVPSYKVQQVDTT 259
Query: 122 GVGDYTAGAL 131
G GD GAL
Sbjct: 260 GAGDAFVGAL 269
>sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1
Length = 1087
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 14/50 (28%)
Query: 108 GEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGN-----VFRIYG 152
GE+P+++ +L +KG+ SIC+++ A+ GN VFR+YG
Sbjct: 817 GELPKEQLYVLKLKGI---------SICFSVLKAALSGNYVNFGVFRLYG 857
>sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1
Length = 1087
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 14/50 (28%)
Query: 108 GEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGN-----VFRIYG 152
GE+P+++ +L +KG+ SIC+++ A+ GN VFR+YG
Sbjct: 817 GELPKEQLYVLKLKGI---------SICFSVLKAALSGNYVNFGVFRLYG 857
>sp|Q54KG3|VPS51_DICDI Vacuolar protein sorting-associated protein 51 homolog
OS=Dictyostelium discoideum GN=vps51 PE=3 SV=1
Length = 917
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 34/203 (16%)
Query: 40 WISEVMLQQTQVKT-VLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAG 98
+SE+ +KT V Y KFI IK + NV M EG+ S+ +
Sbjct: 208 MVSEIRTLDGDMKTLVYDNYTKFINATDIIKKM----KTNVENMEEGMALLSKNMDLITN 263
Query: 99 C-----------RQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGN- 146
C R I+Q G + + ++L + + LA YN + N
Sbjct: 264 CSEKINSTLSVRRDRIDQLSG-LQKFFQKLQFLTALPSSLNHCLAMQAYNQAVRYYNSNS 322
Query: 147 -VFRIYGRLFEIE------DDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCL 199
+ + Y + + D I K +YE L S + SQT+ E + LMDL V L
Sbjct: 323 GILKQYSHIPSFQNIQNECDSIMKTMKDKLYERLSSLSTSQTDCVESAEVLMDLLEPVEL 382
Query: 200 FKNPKCKECPLSRFCSAYKNNTI 222
+ S++ + K++TI
Sbjct: 383 VR---------SKYLESRKHHTI 396
>sp|P15380|PUT4_YEAST Proline-specific permease OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUT4 PE=1 SV=2
Length = 627
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 11 LAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKD 70
L F+++I Y +LP++ PY VW S +++ + T+ Y FI Y + D
Sbjct: 503 LRFRKAIF--YNGLYDRLPFKTWGQPYTVWFSLIVI---GIITITNGYAIFIPKYWRVAD 557
Query: 71 F--AFDTEDNVLKMWEGLGYYSR 91
F A+ T L +W G Y+R
Sbjct: 558 FIAAYITLPIFLVLWFGHKLYTR 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,989,081
Number of Sequences: 539616
Number of extensions: 5538972
Number of successful extensions: 12532
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 12439
Number of HSP's gapped (non-prelim): 67
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)