Query psy9547
Match_columns 363
No_of_seqs 350 out of 2223
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:22:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 100.0 3.2E-85 1.1E-89 636.7 38.5 348 10-359 13-362 (369)
2 3n5n_X A/G-specific adenine DN 100.0 1.4E-58 4.6E-63 429.7 18.9 229 6-234 11-248 (287)
3 1kg2_A A/G-specific adenine gl 100.0 2.6E-57 8.8E-62 411.2 24.1 222 10-231 3-225 (225)
4 1kea_A Possible G-T mismatches 100.0 5E-55 1.7E-59 395.0 23.7 216 5-221 4-220 (221)
5 1orn_A Endonuclease III; DNA r 100.0 1.8E-51 6.1E-56 372.6 24.3 209 5-220 5-214 (226)
6 2abk_A Endonuclease III; DNA-r 100.0 3.9E-51 1.3E-55 367.3 19.5 205 6-218 2-207 (211)
7 1pu6_A 3-methyladenine DNA gly 100.0 1E-38 3.4E-43 287.4 17.3 180 10-196 4-212 (218)
8 4e9f_A Methyl-CPG-binding doma 100.0 9.1E-33 3.1E-37 235.8 12.1 119 33-158 28-149 (161)
9 3fhg_A Mjogg, N-glycosylase/DN 100.0 2.4E-32 8.2E-37 244.0 9.9 171 6-200 7-189 (207)
10 4b21_A Probable DNA-3-methylad 100.0 9.8E-30 3.3E-34 230.4 19.2 162 20-194 43-225 (232)
11 2h56_A DNA-3-methyladenine gly 100.0 3.2E-30 1.1E-34 234.2 14.6 175 12-197 31-218 (233)
12 3fhf_A Mjogg, N-glycosylase/DN 100.0 1.7E-30 5.8E-35 231.7 11.4 166 10-200 22-196 (214)
13 3n0u_A Probable N-glycosylase/ 100.0 1E-29 3.4E-34 227.7 10.7 162 8-176 18-193 (219)
14 2yg9_A DNA-3-methyladenine gly 100.0 8.4E-29 2.9E-33 223.6 15.4 160 12-189 40-212 (225)
15 3s6i_A DNA-3-methyladenine gly 100.0 1.2E-27 4E-32 216.4 17.8 149 33-195 46-215 (228)
16 3i0w_A 8-oxoguanine-DNA-glycos 99.9 6.7E-27 2.3E-31 218.9 17.8 153 33-196 112-287 (290)
17 2xhi_A N-glycosylase/DNA lyase 99.9 5.8E-26 2E-30 218.1 18.4 169 13-189 134-334 (360)
18 1mpg_A ALKA, 3-methyladenine D 99.9 6E-25 2E-29 205.3 20.5 145 32-190 109-273 (282)
19 2jhn_A ALKA, 3-methyladenine D 99.9 7.1E-26 2.4E-30 212.7 13.8 164 13-190 97-283 (295)
20 1x51_A A/G-specific adenine DN 99.9 9.3E-26 3.2E-30 192.0 11.3 138 220-358 2-149 (155)
21 3ees_A Probable pyrophosphohyd 99.9 2.9E-23 1E-27 175.2 11.7 138 222-361 2-149 (153)
22 2rrk_A ORF135, CTP pyrophospho 99.9 1.6E-21 5.4E-26 162.1 11.5 127 231-359 3-134 (140)
23 1mut_A MUTT, nucleoside tripho 99.9 6.6E-22 2.3E-26 162.0 8.6 121 236-357 3-128 (129)
24 3r03_A Nudix hydrolase; struct 99.9 1.6E-21 5.5E-26 163.0 10.0 126 235-360 6-137 (144)
25 3gwy_A Putative CTP pyrophosph 99.8 1.9E-21 6.4E-26 162.3 9.4 125 234-360 3-134 (140)
26 3hhj_A Mutator MUTT protein; n 99.8 2.7E-21 9.2E-26 164.7 10.3 137 221-358 14-156 (158)
27 3grn_A MUTT related protein; s 99.8 3.6E-20 1.2E-24 156.8 11.8 122 237-359 8-137 (153)
28 3id9_A MUTT/nudix family prote 99.8 7.6E-19 2.6E-23 151.4 8.7 138 198-357 1-150 (171)
29 3exq_A Nudix family hydrolase; 99.8 2E-18 6.7E-23 147.6 11.1 119 237-357 10-136 (161)
30 3q93_A 7,8-dihydro-8-oxoguanin 99.7 2.9E-18 1E-22 148.9 9.5 123 234-358 21-150 (176)
31 3oga_A Nucleoside triphosphata 99.7 9.8E-18 3.3E-22 143.5 10.4 122 232-355 23-162 (165)
32 2pbt_A AP4A hydrolase; nudix p 99.7 8.1E-18 2.8E-22 138.5 8.6 117 235-358 2-128 (134)
33 1vcd_A NDX1; nudix protein, di 99.7 1.6E-17 5.3E-22 135.4 9.4 116 239-360 4-125 (126)
34 2b06_A MUTT/nudix family prote 99.7 3.4E-17 1.2E-21 138.5 9.6 118 237-358 8-135 (155)
35 4dyw_A MUTT/nudix family prote 99.7 4.7E-17 1.6E-21 138.4 9.8 115 239-357 31-155 (157)
36 3i7u_A AP4A hydrolase; nudix p 99.7 3.2E-17 1.1E-21 136.0 8.3 112 239-357 5-127 (134)
37 2fkb_A Putative nudix hydrolas 99.7 2.8E-17 9.4E-22 142.7 7.9 120 239-359 39-168 (180)
38 3fk9_A Mutator MUTT protein; s 99.7 1.3E-16 4.5E-21 140.0 10.2 117 236-358 3-130 (188)
39 2azw_A MUTT/nudix family prote 99.7 5.7E-17 2E-21 135.7 6.1 124 228-357 9-145 (148)
40 1rya_A GDP-mannose mannosyl hy 99.7 6E-17 2.1E-21 137.5 6.1 119 238-358 19-155 (160)
41 1nqz_A COA pyrophosphatase (MU 99.7 2.6E-17 9E-22 144.8 3.8 133 205-339 3-147 (194)
42 2o1c_A DATP pyrophosphohydrola 99.7 1.1E-16 3.7E-21 134.0 7.4 117 239-358 11-148 (150)
43 1sjy_A MUTT/nudix family prote 99.6 1.8E-16 6.3E-21 134.3 8.0 108 237-345 13-133 (159)
44 1ktg_A Diadenosine tetraphosph 99.6 4.8E-16 1.6E-20 128.6 7.9 117 239-358 5-134 (138)
45 2b0v_A Nudix hydrolase; struct 99.6 4.7E-16 1.6E-20 130.9 7.3 118 239-358 9-139 (153)
46 3eds_A MUTT/nudix family prote 99.6 2.7E-15 9.3E-20 126.8 8.5 106 237-348 21-141 (153)
47 3f6a_A Hydrolase, nudix family 99.6 9.1E-15 3.1E-19 124.2 11.7 113 238-356 7-148 (159)
48 1k2e_A Nudix homolog; nudix/MU 99.6 5E-15 1.7E-19 125.6 9.6 111 239-358 3-135 (156)
49 3cng_A Nudix hydrolase; struct 99.6 5.5E-15 1.9E-19 129.6 10.0 113 239-356 42-162 (189)
50 1q27_A Putative nudix hydrolas 99.6 1.1E-15 3.6E-20 131.5 5.3 120 239-360 36-168 (171)
51 3gg6_A Nudix motif 18, nucleos 99.6 1E-14 3.4E-19 123.4 9.8 117 235-356 18-144 (156)
52 3son_A Hypothetical nudix hydr 99.6 2.4E-15 8.1E-20 126.3 5.5 109 246-358 17-140 (149)
53 3shd_A Phosphatase NUDJ; nudix 99.5 1.2E-14 3.9E-19 122.5 9.2 118 238-358 5-133 (153)
54 3o8s_A Nudix hydrolase, ADP-ri 99.5 9.5E-15 3.3E-19 129.9 7.6 113 239-358 72-195 (206)
55 3f13_A Putative nudix hydrolas 99.5 9.8E-14 3.3E-18 118.9 12.3 110 236-358 15-130 (163)
56 3e57_A Uncharacterized protein 99.5 5.6E-15 1.9E-19 131.3 3.9 116 239-356 70-204 (211)
57 2yyh_A MUTT domain, 8-OXO-DGTP 99.5 7.1E-14 2.4E-18 115.8 9.1 111 240-357 12-136 (139)
58 2pqv_A MUTT/nudix family prote 99.5 1.2E-14 4.2E-19 122.6 4.4 104 239-350 21-137 (154)
59 1hzt_A Isopentenyl diphosphate 99.5 3.5E-14 1.2E-18 124.4 5.4 120 239-359 34-173 (190)
60 1f3y_A Diadenosine 5',5'''-P1, 99.4 3.6E-14 1.2E-18 120.6 4.1 115 239-356 16-162 (165)
61 3q1p_A Phosphohydrolase (MUTT/ 99.4 1.1E-13 3.8E-18 122.9 7.4 114 239-358 70-194 (205)
62 3i9x_A MUTT/nudix family prote 99.4 1.2E-13 4.1E-18 120.7 7.2 108 249-357 46-170 (187)
63 1vk6_A NADH pyrophosphatase; 1 99.4 2.2E-13 7.6E-18 125.9 9.2 112 240-356 142-261 (269)
64 2qjt_B Nicotinamide-nucleotide 99.4 1.7E-13 5.9E-18 131.3 8.8 120 239-361 210-350 (352)
65 2qjo_A Bifunctional NMN adenyl 99.4 1.6E-13 5.4E-18 130.9 8.0 116 239-357 205-339 (341)
66 2yvp_A NDX2, MUTT/nudix family 99.4 5.7E-14 1.9E-18 122.0 3.4 104 238-342 42-154 (182)
67 1v8y_A ADP-ribose pyrophosphat 99.4 1.2E-13 4.1E-18 118.7 5.3 101 239-342 36-144 (170)
68 3u53_A BIS(5'-nucleosyl)-tetra 99.4 3.7E-13 1.3E-17 113.9 8.1 106 247-356 22-139 (155)
69 2w4e_A MUTT/nudix family prote 99.4 1.5E-13 5.1E-18 115.0 3.7 104 238-342 6-117 (145)
70 3fcm_A Hydrolase, nudix family 99.4 7.2E-13 2.4E-17 116.8 6.9 115 239-358 47-183 (197)
71 2fb1_A Conserved hypothetical 99.3 1.6E-12 5.4E-17 117.2 8.3 105 246-354 25-138 (226)
72 2jvb_A Protein PSU1, mRNA-deca 99.3 1E-12 3.6E-17 109.5 5.6 104 237-347 4-119 (146)
73 3gz5_A MUTT/nudix family prote 99.3 2.1E-12 7E-17 117.6 7.5 109 247-357 35-154 (240)
74 1vhz_A ADP compounds hydrolase 99.3 1.8E-12 6.1E-17 114.5 5.7 102 240-343 52-161 (198)
75 1mk1_A ADPR pyrophosphatase; n 99.3 6.6E-13 2.3E-17 118.0 2.7 104 239-344 45-160 (207)
76 3h95_A Nucleoside diphosphate- 99.2 5.3E-12 1.8E-16 111.3 6.2 116 238-356 28-155 (199)
77 1u20_A U8 snoRNA-binding prote 99.2 3.6E-12 1.2E-16 113.8 5.0 109 244-358 51-192 (212)
78 2kdv_A RNA pyrophosphohydrolas 99.2 5E-11 1.7E-15 101.9 10.0 98 239-341 10-134 (164)
79 3fjy_A Probable MUTT1 protein; 99.2 8.8E-12 3E-16 120.2 5.2 107 247-358 36-174 (364)
80 2a6t_A SPAC19A8.12; alpha/beta 99.2 5.8E-11 2E-15 109.9 9.4 104 236-345 100-215 (271)
81 2dho_A Isopentenyl-diphosphate 99.1 8E-11 2.7E-15 106.7 8.4 117 240-357 62-214 (235)
82 2fvv_A Diphosphoinositol polyp 99.1 4.4E-11 1.5E-15 105.2 6.3 96 240-341 43-149 (194)
83 3kvh_A Protein syndesmos; NUDT 99.1 1.4E-11 4.7E-16 106.0 1.6 67 250-323 45-116 (214)
84 2pny_A Isopentenyl-diphosphate 99.1 1.5E-10 5.2E-15 105.5 8.1 117 240-357 73-225 (246)
85 1g0s_A Hypothetical 23.7 kDa p 99.1 8E-11 2.7E-15 104.7 5.5 102 239-341 59-178 (209)
86 3o6z_A GDP-mannose pyrophospha 99.1 7.4E-11 2.5E-15 103.4 5.1 102 239-341 47-165 (191)
87 2fml_A MUTT/nudix family prote 99.1 4.3E-10 1.5E-14 104.1 10.1 107 249-356 56-194 (273)
88 2dsc_A ADP-sugar pyrophosphata 99.0 8.1E-10 2.8E-14 98.3 6.8 92 249-341 77-182 (212)
89 3q91_A Uridine diphosphate glu 98.9 7.2E-10 2.5E-14 99.2 5.4 78 263-341 94-187 (218)
90 3qsj_A Nudix hydrolase; struct 98.9 6.3E-09 2.1E-13 93.8 9.3 109 250-358 25-210 (232)
91 3rh7_A Hypothetical oxidoreduc 98.8 6.5E-09 2.2E-13 98.1 9.1 107 239-358 184-293 (321)
92 1q33_A Pyrophosphatase, ADP-ri 98.8 1.6E-08 5.6E-13 94.4 9.3 102 250-358 140-276 (292)
93 2xsq_A U8 snoRNA-decapping enz 98.6 1.3E-08 4.3E-13 91.0 4.0 87 249-340 65-171 (217)
94 3bho_A Cleavage and polyadenyl 98.4 5.2E-08 1.8E-12 84.9 1.5 48 238-290 60-112 (208)
95 3dup_A MUTT/nudix family prote 98.4 5.6E-07 1.9E-11 83.9 7.5 92 250-341 134-241 (300)
96 2jg6_A DNA-3-methyladenine gly 95.1 0.22 7.4E-06 42.4 10.9 101 34-134 29-168 (186)
97 2ofk_A 3-methyladenine DNA gly 94.4 0.36 1.2E-05 41.0 10.6 100 34-133 29-167 (183)
98 3vdp_A Recombination protein R 91.8 0.047 1.6E-06 47.4 1.2 27 112-138 23-49 (212)
99 2edu_A Kinesin-like protein KI 91.1 0.41 1.4E-05 36.3 5.8 59 68-134 31-89 (98)
100 1x2i_A HEF helicase/nuclease; 90.5 0.21 7.3E-06 35.5 3.5 24 112-135 43-66 (75)
101 2fmp_A DNA polymerase beta; nu 90.5 1.2 4E-05 41.8 9.5 101 7-134 12-117 (335)
102 1vdd_A Recombination protein R 90.0 0.2 6.8E-06 43.9 3.4 27 112-138 9-35 (228)
103 4glx_A DNA ligase; inhibitor, 89.9 0.54 1.9E-05 47.4 7.0 90 55-155 456-577 (586)
104 2ztd_A Holliday junction ATP-d 89.5 0.18 6.3E-06 44.1 2.9 27 112-138 120-146 (212)
105 2duy_A Competence protein come 89.3 0.23 7.9E-06 35.7 2.8 22 113-134 25-46 (75)
106 1z00_A DNA excision repair pro 89.2 0.28 9.5E-06 36.5 3.3 24 112-135 48-71 (89)
107 1kft_A UVRC, excinuclease ABC 89.1 0.25 8.5E-06 35.8 2.9 23 112-134 53-75 (78)
108 2a1j_B DNA excision repair pro 89.1 0.28 9.7E-06 36.7 3.3 24 112-135 61-84 (91)
109 2a1j_A DNA repair endonuclease 89.0 1.1 3.6E-05 31.1 6.0 39 57-98 16-54 (63)
110 1ixr_A Holliday junction DNA h 88.8 0.24 8.1E-06 42.6 3.0 24 112-135 104-127 (191)
111 1cuk_A RUVA protein; DNA repai 87.9 0.29 1E-05 42.5 3.0 24 112-135 105-128 (203)
112 2fmp_A DNA polymerase beta; nu 87.6 1.1 3.7E-05 42.0 6.9 57 77-135 20-77 (335)
113 2bcq_A DNA polymerase lambda; 86.9 1.2 4E-05 41.8 6.7 43 91-135 35-77 (335)
114 3b0x_A DNA polymerase beta fam 86.7 4.5 0.00015 40.6 11.4 107 5-134 1-112 (575)
115 2ihm_A POL MU, DNA polymerase 86.6 0.95 3.3E-05 42.8 6.0 56 78-135 26-81 (360)
116 2ihm_A POL MU, DNA polymerase 86.3 1.2 4.2E-05 42.1 6.6 26 109-134 96-121 (360)
117 1dgs_A DNA ligase; AMP complex 86.1 0.75 2.6E-05 47.0 5.3 74 58-134 454-558 (667)
118 1jms_A Terminal deoxynucleotid 85.0 1.1 3.9E-05 42.6 5.7 56 78-135 45-100 (381)
119 1s5l_U Photosystem II 12 kDa e 84.8 0.39 1.3E-05 38.6 2.0 22 112-133 60-81 (134)
120 2i5h_A Hypothetical protein AF 84.2 0.41 1.4E-05 41.2 2.0 26 110-135 127-152 (205)
121 3arc_U Photosystem II 12 kDa e 83.9 0.41 1.4E-05 36.4 1.6 22 112-133 23-44 (97)
122 1s5l_U Photosystem II 12 kDa e 83.9 0.39 1.3E-05 38.6 1.6 54 68-134 54-108 (134)
123 1jms_A Terminal deoxynucleotid 83.8 1.1 3.8E-05 42.7 5.0 25 109-133 115-139 (381)
124 2a1j_A DNA repair endonuclease 83.7 0.73 2.5E-05 31.9 2.8 21 114-134 3-23 (63)
125 3arc_U Photosystem II 12 kDa e 83.7 0.32 1.1E-05 37.0 0.9 58 65-134 14-71 (97)
126 1z00_B DNA repair endonuclease 83.6 2.2 7.6E-05 31.4 5.5 40 57-99 30-69 (84)
127 2duy_A Competence protein come 83.1 0.82 2.8E-05 32.7 3.0 56 67-134 17-72 (75)
128 2owo_A DNA ligase; protein-DNA 82.4 2.4 8.2E-05 43.4 7.1 74 58-134 459-563 (671)
129 2kp7_A Crossover junction endo 81.9 2.1 7.1E-05 31.7 4.8 42 91-134 36-77 (87)
130 2edu_A Kinesin-like protein KI 79.8 1.1 3.8E-05 33.8 2.8 22 113-134 38-59 (98)
131 1z00_B DNA repair endonuclease 78.9 1.3 4.4E-05 32.7 2.8 22 113-134 16-37 (84)
132 4gfj_A Topoisomerase V; helix- 78.3 2.8 9.4E-05 40.1 5.4 70 60-133 533-640 (685)
133 1ixr_A Holliday junction DNA h 77.2 1.4 4.8E-05 37.8 3.0 24 114-138 71-94 (191)
134 2ztd_A Holliday junction ATP-d 77.2 1.3 4.5E-05 38.6 2.8 36 114-150 87-125 (212)
135 2bgw_A XPF endonuclease; hydro 76.0 2.3 7.8E-05 37.0 4.1 23 112-134 191-213 (219)
136 2csb_A Topoisomerase V, TOP61; 75.0 11 0.00038 33.7 8.2 66 60-139 369-434 (519)
137 3c1y_A DNA integrity scanning 74.9 2.7 9.1E-05 39.8 4.4 47 57-105 327-373 (377)
138 1cuk_A RUVA protein; DNA repai 72.3 2 7E-05 37.1 2.7 24 114-138 72-95 (203)
139 3c1y_A DNA integrity scanning 67.6 4.1 0.00014 38.6 3.9 36 97-132 326-364 (377)
140 1wcn_A Transcription elongatio 65.3 6.2 0.00021 27.8 3.6 40 59-101 21-62 (70)
141 2rhf_A DNA helicase RECQ; HRDC 61.4 9 0.00031 27.2 4.0 21 110-130 42-62 (77)
142 3r8n_M 30S ribosomal protein S 60.8 7.4 0.00025 30.3 3.6 28 108-135 6-36 (114)
143 2w9m_A Polymerase X; SAXS, DNA 59.6 4.3 0.00015 40.8 2.6 25 110-134 92-116 (578)
144 4gfj_A Topoisomerase V; helix- 58.9 18 0.00061 34.6 6.4 37 58-97 481-517 (685)
145 2kv2_A Bloom syndrome protein; 56.7 11 0.00036 27.5 3.7 20 110-129 44-63 (85)
146 1wud_A ATP-dependent DNA helic 55.6 13 0.00043 27.4 4.0 20 110-129 50-69 (89)
147 1vq8_Y 50S ribosomal protein L 54.8 2.6 8.8E-05 37.5 0.0 11 282-292 219-229 (241)
148 1u9l_A Transcription elongatio 54.7 10 0.00034 26.7 3.1 43 60-105 21-65 (70)
149 3gfk_B DNA-directed RNA polyme 53.9 7.3 0.00025 28.2 2.3 49 83-133 18-66 (79)
150 2bcq_A DNA polymerase lambda; 53.7 7.2 0.00025 36.3 2.9 21 113-133 94-114 (335)
151 3im1_A Protein SNU246, PRE-mRN 53.2 17 0.00057 33.5 5.4 44 84-132 131-174 (328)
152 3sgi_A DNA ligase; HET: DNA AM 52.8 2.9 9.9E-05 42.3 0.0 22 113-134 559-580 (615)
153 2e1f_A Werner syndrome ATP-dep 51.7 13 0.00046 28.1 3.7 22 110-131 52-73 (103)
154 1z00_A DNA excision repair pro 51.6 20 0.00067 26.0 4.5 38 58-97 32-69 (89)
155 3u5c_S 40S ribosomal protein S 50.5 8.7 0.0003 31.2 2.5 27 109-135 21-50 (146)
156 3idw_A Actin cytoskeleton-regu 50.2 64 0.0022 22.7 6.8 63 40-108 5-67 (72)
157 3j20_O 30S ribosomal protein S 48.6 9.6 0.00033 31.1 2.5 28 108-135 13-43 (148)
158 3iz6_M 40S ribosomal protein S 48.2 11 0.00036 31.0 2.7 28 108-135 18-48 (152)
159 1x2i_A HEF helicase/nuclease; 47.7 34 0.0012 23.5 5.1 39 57-97 26-64 (75)
160 2rrd_A BLM HRDC domain, HRDC d 47.5 17 0.00059 27.4 3.7 20 110-129 59-78 (101)
161 2xzm_M RPS18E; ribosome, trans 47.5 11 0.00036 31.1 2.6 22 114-135 29-50 (155)
162 2a1j_B DNA excision repair pro 46.0 20 0.00068 26.2 3.8 38 58-97 45-82 (91)
163 3bqs_A Uncharacterized protein 45.7 16 0.00056 27.2 3.2 41 114-154 3-43 (93)
164 1kft_A UVRC, excinuclease ABC 44.7 14 0.00048 26.1 2.7 38 58-97 37-74 (78)
165 2vqe_M 30S ribosomal protein S 44.2 12 0.00041 29.6 2.4 28 108-135 7-37 (126)
166 1z3e_B DNA-directed RNA polyme 41.5 17 0.00057 25.8 2.5 50 83-134 11-60 (73)
167 2q0z_X Protein Pro2281; SEC63, 38.4 52 0.0018 30.3 6.2 44 85-132 135-178 (339)
168 3c65_A Uvrabc system protein C 36.9 7.2 0.00025 34.2 0.0 20 115-134 173-192 (226)
169 2cp8_A NEXT to BRCA1 gene 1 pr 36.5 14 0.00047 24.6 1.3 37 79-120 12-48 (54)
170 2nrt_A Uvrabc system protein C 35.6 20 0.00068 31.2 2.6 22 115-137 168-189 (220)
171 1b22_A DNA repair protein RAD5 35.2 17 0.00057 28.2 1.9 37 64-103 45-82 (114)
172 3mab_A Uncharacterized protein 34.8 22 0.00074 26.5 2.3 26 114-139 3-28 (93)
173 2dgz_A Werner syndrome protein 34.3 22 0.00077 27.4 2.5 20 110-129 59-78 (113)
174 1vq8_Y 50S ribosomal protein L 34.2 8.5 0.00029 34.1 0.0 22 112-133 45-66 (241)
175 2bgw_A XPF endonuclease; hydro 33.9 44 0.0015 28.5 4.7 38 57-97 174-212 (219)
176 2ziu_A MUS81 protein; helix-ha 33.4 50 0.0017 30.0 5.1 21 114-134 236-256 (311)
177 3k4g_A DNA-directed RNA polyme 31.9 28 0.00097 25.5 2.5 49 84-134 15-63 (86)
178 1exn_A 5'-exonuclease, 5'-nucl 31.9 18 0.00063 32.8 1.9 15 119-133 207-221 (290)
179 2w9m_A Polymerase X; SAXS, DNA 31.4 41 0.0014 33.6 4.5 37 6-45 9-45 (578)
180 4ic1_A Uncharacterized protein 29.0 15 0.0005 31.5 0.6 17 201-217 188-204 (206)
181 1ci4_A Protein (barrier-TO-aut 28.6 24 0.0008 26.1 1.6 26 113-138 16-41 (89)
182 2va8_A SSO2462, SKI2-type heli 27.5 1.5E+02 0.0051 29.9 8.1 50 85-138 631-680 (715)
183 2nrt_A Uvrabc system protein C 27.0 78 0.0027 27.4 4.9 20 113-134 198-218 (220)
184 3q8k_A Flap endonuclease 1; he 26.5 26 0.00087 32.6 1.9 16 119-134 236-251 (341)
185 3b0x_A DNA polymerase beta fam 25.9 1.3E+02 0.0043 29.9 7.0 56 78-135 12-73 (575)
186 1b22_A DNA repair protein RAD5 25.7 36 0.0012 26.3 2.3 25 112-136 55-79 (114)
187 3bzc_A TEX; helix-turn-helix, 25.6 49 0.0017 34.4 4.0 73 73-154 504-587 (785)
188 1coo_A RNA polymerase alpha su 24.8 44 0.0015 25.1 2.5 50 83-134 26-75 (98)
189 2dna_A Unnamed protein product 22.1 49 0.0017 23.0 2.2 40 81-125 24-64 (67)
190 1rxw_A Flap structure-specific 20.3 42 0.0014 30.9 2.0 16 119-134 239-254 (336)
191 2lpe_A Kinase suppressor of RA 20.3 97 0.0033 25.0 3.9 87 5-99 45-141 (149)
192 3ory_A Flap endonuclease 1; hy 20.1 43 0.0015 31.4 2.0 16 119-134 255-270 (363)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=3.2e-85 Score=636.66 Aligned_cols=348 Identities=44% Similarity=0.842 Sum_probs=331.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhccCch
Q psy9547 10 ILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYY 89 (363)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~ 89 (363)
...|.+.|++||+.++|++|||..+|||++||++||+|||++++|.+++.+|+++||||++|+++++++|.++|+++|||
T Consensus 13 ~~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~ 92 (369)
T 3fsp_A 13 AREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY 92 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhcChH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcccccCcCCcccHHH
Q psy9547 90 SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKVV 169 (363)
Q Consensus 90 ~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~ 169 (363)
+||++|+++|+.++++|+|++|+++++|++|||||+|||++||+|+||+|+++||+||.|+++|+|+++.++....+++.
T Consensus 93 ~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~ 172 (369)
T 3fsp_A 93 SRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKR 172 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876666678899
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhhcCCcccCCcccCCccccceeEEEEEEEeCCc
Q psy9547 170 YETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTN 249 (363)
Q Consensus 170 ~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k~~~~~~~v~~~ii~~~~~ 249 (363)
+++.++.++|.+.+++||++||+||+++|+|++|+|+.|||++.|.++..+.+..+|+|++|++++.+.+++++|.+++|
T Consensus 173 ~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~~~~~~~~vi~~~~g 252 (369)
T 3fsp_A 173 FEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEG 252 (369)
T ss_dssp HHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEEEEEEECSSS
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCcceEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999987779
Q ss_pred eEEEeecCCCccccccccccccCCCC-CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEEEEEEecCCCCCC
Q psy9547 250 KYLIQKRPTTGLLSNFYMFLSFESDT-PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDVYSGTAKEKTIPA 327 (363)
Q Consensus 250 ~vLl~~R~~~~~~~glWEFPggk~e~-~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~~~~~ 327 (363)
+||+.||+.+|+|+|+|+||||++|. ++++++ ||+.||+|+++.... .++.+.|.|+|+++++++|.++...+ ..+
T Consensus 253 ~vLL~rR~~~g~~~GlWefPGG~ve~gt~~~al~REl~EE~Gl~v~~~~-~l~~~~h~~~h~~~~~~~~~~~~~~~-~~e 330 (369)
T 3fsp_A 253 RVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTE-PIVSFEHAFSHLVWQLTVFPGRLVHG-GPV 330 (369)
T ss_dssp EEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECC-CCCEEEEECSSEEEEEEEEEEEECCS-SCC
T ss_pred EEEEEECCCCCCcCCcccCCCcccCCCCcHHHHHHHHHHHhCCceeeec-ccccEEEEcceEEEEEEEEEEEEcCC-CCC
Confidence 99999999999999999999999998 788999 999999999998888 89999999999999999999998763 557
Q ss_pred CCCCeeecccccCcCCCChHHHHHHHHHHhhh
Q psy9547 328 NKTYKLITETQMKKYAFPVPYQKVWKLFTKSK 359 (363)
Q Consensus 328 ~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~ 359 (363)
+++++|++++++.++++|++++++++.+.+..
T Consensus 331 ~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~ 362 (369)
T 3fsp_A 331 EEPYRLAPEDELKAYAFPVSHQRVWREYKEWA 362 (369)
T ss_dssp CTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHT
T ss_pred ccccEEeeHHHhhhCCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999987654
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-58 Score=429.70 Aligned_cols=229 Identities=41% Similarity=0.750 Sum_probs=212.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCC--------CCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHH
Q psy9547 6 SAKEILAFQESILTWYKQNARQLPWRE--------SNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTED 77 (363)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~lpw~~--------~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~ 77 (363)
++.++..|.+.|++||+.++|++|||. ..|||++||++||+|||++++|.+++.+|+++|||+++|++++++
T Consensus 11 ~~~~~~~~~~~ll~Wy~~~~R~lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fptpe~La~a~~e 90 (287)
T 3n5n_X 11 DVAEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLE 90 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCcCcCccccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHH
Confidence 567899999999999999999999998 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhc-CCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcc
Q psy9547 78 NVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS-IKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFE 156 (363)
Q Consensus 78 el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~-lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~ 156 (363)
+|+++|+++|||+||++|+++|+.++++|+|.+|+++++|++ |||||+|||++||+|+||+|+++||+||+|++.|+|+
T Consensus 91 el~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~ 170 (287)
T 3n5n_X 91 EVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRA 170 (287)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cccCcCCcccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhhcCCcccCCcccCCccc
Q psy9547 157 IEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKV 234 (363)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k~~~ 234 (363)
++.+.....+.+.++..++.++|.+.+++||++||+||+.+|+|++|+|+.|||++.|++++.+.+..+|.+.+...+
T Consensus 171 i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~~~~ 248 (287)
T 3n5n_X 171 IGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGS 248 (287)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcchhhhhhhhccCCC
Confidence 875544445566777778899999999999999999999999999999999999999999999998888887665543
No 3
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=2.6e-57 Score=411.23 Aligned_cols=222 Identities=40% Similarity=0.741 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHhhcCC-CCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhccCc
Q psy9547 10 ILAFQESILTWYKQNAR-QLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGY 88 (363)
Q Consensus 10 ~~~~~~~l~~~~~~~~~-~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~ 88 (363)
+..|.+.|.+||+.+++ ++|||...|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.++|+++||
T Consensus 3 ~~~~~~~l~~~~~~~g~~~l~w~~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~~~i~~~G~ 82 (225)
T 1kg2_A 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHCCCCSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhCCh
Confidence 35689999999999997 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcccccCcCCcccHH
Q psy9547 89 YSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKGKTKV 168 (363)
Q Consensus 89 ~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~ 168 (363)
|+||++|+++|+.++++|+|++|+++++|++|||||+|||++||+|+||+|+++||+||.|+++|+++++.......+.+
T Consensus 83 ~~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~ 162 (225)
T 1kg2_A 83 YARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVEN 162 (225)
T ss_dssp THHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCCCCccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998775444455778
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhhcCCcccCCcccCC
Q psy9547 169 VYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGK 231 (363)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k 231 (363)
.+++.++.++|.+.++.||++||+||+.+|++++|+|+.|||++.|+++..+.+..+|+|++|
T Consensus 163 ~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~ 225 (225)
T 1kg2_A 163 KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK 225 (225)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCCC-
T ss_pred HHHHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCCcccCCCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999997654
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=5e-55 Score=394.97 Aligned_cols=216 Identities=29% Similarity=0.598 Sum_probs=201.6
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHh
Q psy9547 5 LSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWE 84 (363)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~ 84 (363)
+++.++..|.+.|++||..+++++||+...|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.++|+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~pw~~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~~e~l~~~i~ 83 (221)
T 1kea_A 4 ATNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIK 83 (221)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCCCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTG
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhCcCCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchH-HHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcccccCcCC
Q psy9547 85 GLGYYS-RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISK 163 (363)
Q Consensus 85 ~lG~~~-rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~ 163 (363)
++|||+ ||++|+++|+.++++|+|++|+++++|++|||||+|||++|++|++|+|+++||+||+|+++|++++......
T Consensus 84 ~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~ 163 (221)
T 1kea_A 84 EIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLN 163 (221)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCCCcceecHHHHHHHHHHhCCCCCCCc
Confidence 999996 9999999999999999999999999999999999999999999999999999999999999999665543322
Q ss_pred cccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhhcCC
Q psy9547 164 GKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNNT 221 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 221 (363)
.. .+.+++.++.++|.+.++++|++||+||+.+|++++|+|+.|||++.|+++..+.
T Consensus 164 ~~-~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 220 (221)
T 1kea_A 164 YN-HKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS 220 (221)
T ss_dssp TT-SHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC-
T ss_pred HH-HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcCC
Confidence 22 5678899999999999999999999999999999999999999999999987654
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=1.8e-51 Score=372.58 Aligned_cols=209 Identities=24% Similarity=0.428 Sum_probs=195.6
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHh
Q psy9547 5 LSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWE 84 (363)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~ 84 (363)
...+++.++++.|.+||+...+.++| .|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.++|+
T Consensus 5 ~~~~~~~~i~~~L~~~y~~~~~~l~~---~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~ 81 (226)
T 1orn_A 5 LTKQQIRYCLDEMAKMFPDAHCELVH---RNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIR 81 (226)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCCCSCC---SSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTG
T ss_pred chHHHHHHHHHHHHHHcCccCCCCCC---CCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHH
Confidence 34478889999999999987666666 699999999999999999999999999999999999999999999999999
Q ss_pred ccCchH-HHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcccccCcCC
Q psy9547 85 GLGYYS-RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISK 163 (363)
Q Consensus 85 ~lG~~~-rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~ 163 (363)
++|||+ ||++|+++|+.++++|+|++|+++++|++|||||+|||++|++|+||+|+++||+||.|++.|+++.+.
T Consensus 82 ~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~---- 157 (226)
T 1orn_A 82 SIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRW---- 157 (226)
T ss_dssp GGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCT----
T ss_pred HcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCCCCC----
Confidence 999996 999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred cccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhhcC
Q psy9547 164 GKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYKNN 220 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 220 (363)
..+++.+++.++.++|.+.++++|++||+||+.+|++++|+|+.|||++.|+++..+
T Consensus 158 ~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 158 DDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp TCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence 356788899999999999999999999999999999999999999999999998753
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=3.9e-51 Score=367.29 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=191.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhc
Q psy9547 6 SAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEG 85 (363)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~ 85 (363)
+.+++.++++.|.+||+...+.+|| .|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.++|++
T Consensus 2 ~~~~~~~i~~~L~~~~~~~~~~~~~---~~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~ 78 (211)
T 2abk_A 2 NKAKRLEILTRLRENNPHPTTELNF---SSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKT 78 (211)
T ss_dssp CHHHHHHHHHHHHHHCSSCCCSSCC---SSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHcCCCCcCCCC---CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
Confidence 4457789999999999876554444 7999999999999999999999999999999999999999999999999999
Q ss_pred cCchH-HHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcccccCcCCc
Q psy9547 86 LGYYS-RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFEIEDDISKG 164 (363)
Q Consensus 86 lG~~~-rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~~~~~~~~~ 164 (363)
+|||+ ||++|+++|+.++++|+|++|+++++|++|||||+|||++|++|++|+|+++||+||.|+++|+|+.+ .
T Consensus 79 ~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-----~ 153 (211)
T 2abk_A 79 IGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-----G 153 (211)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-----C
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHHCCCCcCCcCHHHHHHHHHhCCCC-----C
Confidence 99996 99999999999999999999999999999999999999999999999999999999999999997532 3
Q ss_pred ccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcCCCCCCCCCCCcccChhhh
Q psy9547 165 KTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLFKNPKCKECPLSRFCSAYK 218 (363)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 218 (363)
.+++.+++.++.++|.+.++.+|++||+||+.+|++++|+|+.|||++.|+++.
T Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 154 KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp SSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCcC
Confidence 478889999999999999999999999999999999999999999999999763
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1e-38 Score=287.44 Aligned_cols=180 Identities=14% Similarity=0.227 Sum_probs=164.3
Q ss_pred HHHHHHHHHHH-HhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHh-CCC------HHHHhcCCHHHHHH
Q psy9547 10 ILAFQESILTW-YKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT-YPT------IKDFAFDTEDNVLK 81 (363)
Q Consensus 10 ~~~~~~~l~~~-~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~-~pt------~~~la~a~~~el~~ 81 (363)
..++.++|.+| |+.+++.+ ||...|||++||++||+|||++++|.+++.+|++. ||| |++|+++++++|.+
T Consensus 4 ~~~i~~~L~~~~~~~~~~~~-~~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~ 82 (218)
T 1pu6_A 4 SFEILKALKSLDLLKNAPAW-WWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAE 82 (218)
T ss_dssp HHHHHHHHHTTTTTTTSCTT-SSTTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHccCcccCCCc-CCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHH
Confidence 46789999999 99888754 88999999999999999999999999999999998 999 99999999999999
Q ss_pred HHhccCchH-HHHHHHHHHHHhhHHhCC----CCcccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhcc
Q psy9547 82 MWEGLGYYS-RVRNFQAGCRQVIEQFGG----EVPRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLFE 156 (363)
Q Consensus 82 ~~~~lG~~~-rA~~l~~~a~~i~~~~~g----~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~~ 156 (363)
+|+++|||+ ||++|+++|+.+.++|+| +.|.++++|++|||||+|||++||+|++|+|+++||+|+.|++.|+|+
T Consensus 83 ~ir~~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~ 162 (218)
T 1pu6_A 83 CVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGI 162 (218)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTC
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCCccccCHHHHHHHHHcCC
Confidence 999999997 999999999999999988 788899999999999999999999999999999999999999999865
Q ss_pred cccCcCCcccHHHHHHHHHh----cCC------------cccHHHHHHHHHHHhhh
Q psy9547 157 IEDDISKGKTKVVYETLVSK----TMS------------QTNAREFNQALMDLGAT 196 (363)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~----~~p------------~~~~~~~~~~l~~~G~~ 196 (363)
. ..+++++++.++. ++| .+.+.+||..|++||+.
T Consensus 163 ~------~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 163 E------IEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp C------CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred C------CCCHHHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 3 2456677777776 565 34689999999999997
No 8
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.98 E-value=9.1e-33 Score=235.78 Aligned_cols=119 Identities=20% Similarity=0.365 Sum_probs=111.6
Q ss_pred CCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHHHHhhHHhCCCCc
Q psy9547 33 SNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVIEQFGGEVP 111 (363)
Q Consensus 33 ~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a~~i~~~~~g~~p 111 (363)
.+|||++|||+||||||++++|.+++.+|+++|||+++|+++++++|+++|+++|||+ ||++|+++++.+ +|
T Consensus 28 ~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~-------vp 100 (161)
T 4e9f_A 28 FHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEY-------LT 100 (161)
T ss_dssp TTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHH-------HH
T ss_pred cCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCc-------CC
Confidence 3799999999999999999999999999999999999999999999999999999996 999999998755 57
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHhcCC--ccccccchHHHHHhhhcccc
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASICYNI--PTPAVDGNVFRIYGRLFEIE 158 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~~~~--~~~~vD~~v~Rvl~Rl~~~~ 158 (363)
+++++|++|||||+||||+|++||+|+ +++|+|.|++|++.++....
T Consensus 101 ~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~~ 149 (161)
T 4e9f_A 101 KQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH 149 (161)
T ss_dssp SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHTC
T ss_pred CChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcCc
Confidence 789999999999999999999999995 78999999999999987544
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.4e-32 Score=244.02 Aligned_cols=171 Identities=12% Similarity=0.174 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhc
Q psy9547 6 SAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEG 85 (363)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~ 85 (363)
+.++++.+.+...+-|+ ..||+...|||++||++||+|||++++|.+++.+| ++.|+.+++++|.++|++
T Consensus 7 ~~~~~~~~v~~~~~~f~----~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e~l~~~ir~ 76 (207)
T 3fhg_A 7 QNPKVRARVLERVDEFR----LNNLSNEEVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEEEIRNILKS 76 (207)
T ss_dssp HCHHHHHHHHHHHHHHH----HHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh----hccCCCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHH
Confidence 34567777777777774 47999999999999999999999999999999999 489999999999999996
Q ss_pred cC--chH-HHHHHHHHHHHhhH-------HhCCCCc-ccHHHHhcCCCCcHHHHHHHHHH-hcCCccccccchHHHHHhh
Q psy9547 86 LG--YYS-RVRNFQAGCRQVIE-------QFGGEVP-RDKKQLLSIKGVGDYTAGALASI-CYNIPTPAVDGNVFRIYGR 153 (363)
Q Consensus 86 lG--~~~-rA~~l~~~a~~i~~-------~~~g~~p-~~~~~L~~lpGIG~~tA~~il~~-~~~~~~~~vD~~v~Rvl~R 153 (363)
+| ||+ ||++|+++|+.+.+ .++|..| +++++|++|||||+|||++||+| ++ .++++||+||+|++.|
T Consensus 77 ~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~r 155 (207)
T 3fhg_A 77 CKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRR 155 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecHHHHHHHHH
Confidence 66 886 99999999996543 3445566 68999999999999999999998 66 7899999999999999
Q ss_pred hcccccCcCCcccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcC
Q psy9547 154 LFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLF 200 (363)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~ 200 (363)
+|+++.... ..+++..+.++|..|.+||+.+|.+
T Consensus 156 lg~~~~~~~-------------k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 156 IGAIGETNV-------------KQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp TTSSCCCCC-------------SCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCcccc-------------ccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 998764211 1234556788899999999988864
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.97 E-value=9.8e-30 Score=230.36 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=135.5
Q ss_pred HHhhcCC-CCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHh------CCCHHHHhcCCHHHHHHHHhccCchH-H
Q psy9547 20 WYKQNAR-QLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT------YPTIKDFAFDTEDNVLKMWEGLGYYS-R 91 (363)
Q Consensus 20 ~~~~~~~-~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~------~pt~~~la~a~~~el~~~~~~lG~~~-r 91 (363)
++...+. .+||+...|||++||++||+|||+++++.+++.+|.+. ||||++|+++++++| +++||++ |
T Consensus 43 li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~L----r~~Gl~~~K 118 (232)
T 4b21_A 43 LVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETL----HECGFSKLK 118 (232)
T ss_dssp HHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHH----HTTTCCHHH
T ss_pred HHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHH----HHcCCcHHH
Confidence 4444433 46677788999999999999999999999999999998 899999999999875 6799986 8
Q ss_pred HHHHHHHHHHhhHHhCCCCc-----------ccHHHHhcCCCCcHHHHHHHHHHhcCCc-cccc-cchHHHHHhhhcccc
Q psy9547 92 VRNFQAGCRQVIEQFGGEVP-----------RDKKQLLSIKGVGDYTAGALASICYNIP-TPAV-DGNVFRIYGRLFEIE 158 (363)
Q Consensus 92 A~~l~~~a~~i~~~~~g~~p-----------~~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~ 158 (363)
|++|+++|+.+.+ |.+| +.+++|++|||||+|||++|++|++|+| ++|| |+||+|+++|+++.+
T Consensus 119 a~~l~~~A~~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~ 195 (232)
T 4b21_A 119 SQEIHIVAEAALN---KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLS 195 (232)
T ss_dssp HHHHHHHHHHHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCC
Confidence 9999999999987 5554 4689999999999999999999999997 6788 999999999999865
Q ss_pred cCcCCcccHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q psy9547 159 DDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLG 194 (363)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G 194 (363)
. ..+++.+++.++.|.|...+..++ |+...
T Consensus 196 ~----~~~~~~~~~~~e~w~P~rs~A~~y--Lw~~~ 225 (232)
T 4b21_A 196 S----KPQTEEVEKLTKPCKPYRTIAAWY--LWQIP 225 (232)
T ss_dssp S----CCCHHHHHHHTGGGTTCHHHHHHH--HHTGG
T ss_pred C----CCCHHHHHHHHHHccCHHHHHHHH--HHHcC
Confidence 3 235678888899999876544433 44433
No 11
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.97 E-value=3.2e-30 Score=234.21 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHh----CCCHHHHhcCCHHHHHHHHhccC
Q psy9547 12 AFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT----YPTIKDFAFDTEDNVLKMWEGLG 87 (363)
Q Consensus 12 ~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~----~pt~~~la~a~~~el~~~~~~lG 87 (363)
.+++.+.+.|+ .++|+...|||++||++||+|||+++++.+++.+|++. ||||++|+++++++| +++|
T Consensus 31 ~~l~~l~~~~~----~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G 102 (233)
T 2h56_A 31 SRLFQFIEIAG----EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAG 102 (233)
T ss_dssp HHHHHHHHHHC----CEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTT
T ss_pred HHHHHHHHHcC----CCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcC
Confidence 45667777775 35677889999999999999999999999999999987 469999999999887 6799
Q ss_pred chH-HHHHHHHHHHHhhHHh-CCC----Cc--ccHHHHhcCCCCcHHHHHHHHHHhcCCc-cccccchHHHHHhhhcccc
Q psy9547 88 YYS-RVRNFQAGCRQVIEQF-GGE----VP--RDKKQLLSIKGVGDYTAGALASICYNIP-TPAVDGNVFRIYGRLFEIE 158 (363)
Q Consensus 88 ~~~-rA~~l~~~a~~i~~~~-~g~----~p--~~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~ 158 (363)
|++ ||++|+++|+.+.+.+ +++ .| +++++|++|||||+|||++||+|++|+| ++|||.|+.|+..|++...
T Consensus 103 ~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~ 182 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGN 182 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccC
Confidence 996 8999999999999865 322 26 6799999999999999999999999998 8999999988888876432
Q ss_pred cCcCCcccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhh
Q psy9547 159 DDISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATV 197 (363)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~ 197 (363)
. ...+++.+++.++.+.|...+..++.+.++.+..-
T Consensus 183 ~---~~~~~~~~~~~~e~~~P~~~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 183 G---EGDGKKLLIYHGKAWAPYETVACLYLWKAAGTFAE 218 (233)
T ss_dssp S---CSCHHHHHHHHHGGGTTCHHHHHHHHHHHHTHHHH
T ss_pred C---CCCCHHHHHHHHHHcCcHHHHHHHHHHhccccccc
Confidence 1 23467889999999999998888888877766543
No 12
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.97 E-value=1.7e-30 Score=231.71 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhccC--
Q psy9547 10 ILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLG-- 87 (363)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~lG-- 87 (363)
++...+.-++-|.... |...+|||++||++||||||++++|.+++.+|. +.|+++++++|.++|+++|
T Consensus 22 ~~~~i~~r~~ef~~~~----~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~r 91 (214)
T 3fhf_A 22 IKDIIDKRIQEFKSFK----NKSNEEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHR 91 (214)
T ss_dssp HHHHHHHHHHHHHGGG----GSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhhc----cCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhH
Confidence 3334444444454321 334579999999999999999999999999996 7899999999999999999
Q ss_pred chH-HHHHHHHHHH--HhhHHhCC--CCcccHHHHh-cCCCCcHHHHHHHHHHhcCCcccc-ccchHHHHHhhhcccccC
Q psy9547 88 YYS-RVRNFQAGCR--QVIEQFGG--EVPRDKKQLL-SIKGVGDYTAGALASICYNIPTPA-VDGNVFRIYGRLFEIEDD 160 (363)
Q Consensus 88 ~~~-rA~~l~~~a~--~i~~~~~g--~~p~~~~~L~-~lpGIG~~tA~~il~~~~~~~~~~-vD~~v~Rvl~Rl~~~~~~ 160 (363)
||+ ||++|+++++ .+.+.++| ++|+++++|+ +|||||+|||++||+++ +.+.++ ||+||.|+++|+|+++..
T Consensus 92 f~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~ 170 (214)
T 3fhf_A 92 FYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEI 170 (214)
T ss_dssp THHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCC
Confidence 996 9999999999 88888877 7889999999 99999999999999998 556555 999999999999987631
Q ss_pred cCCcccHHHHHHHHHhcCCcccHHHHHHHHHHHhhhhCcC
Q psy9547 161 ISKGKTKVVYETLVSKTMSQTNAREFNQALMDLGATVCLF 200 (363)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~ 200 (363)
+ ..+|++.+.++|..|.+||+.+|.+
T Consensus 171 ~--------------k~lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 171 P--------------KTLSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp C--------------SSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred C--------------CcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 1 2346677899999999999999985
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.96 E-value=1e-29 Score=227.70 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC----CCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHH
Q psy9547 8 KEILAFQESILTWYKQNARQ----LPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMW 83 (363)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~----lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~ 83 (363)
.++.++.+++...+...-.+ .||+...|||++||++||+|||+++++.+++.+| |+.|+.+++++|.++|
T Consensus 18 ~~~~~~~~~~~~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~~~~eeL~~~I 91 (219)
T 3n0u_A 18 KELERIREEAKPLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVHLPLEELAEKL 91 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHH
Confidence 45566666665554443223 3788889999999999999999999999999999 6889999999999999
Q ss_pred hccC--chH-HHHHHHHHHHHh---hHHhCCCCcccHHHHh-cCCCCcHHHHHHHHHHhcCC-ccccccchHHHHHhhhc
Q psy9547 84 EGLG--YYS-RVRNFQAGCRQV---IEQFGGEVPRDKKQLL-SIKGVGDYTAGALASICYNI-PTPAVDGNVFRIYGRLF 155 (363)
Q Consensus 84 ~~lG--~~~-rA~~l~~~a~~i---~~~~~g~~p~~~~~L~-~lpGIG~~tA~~il~~~~~~-~~~~vD~~v~Rvl~Rl~ 155 (363)
+++| ||+ ||++|+++|+.+ .+.++++.|.++++|+ +|||||+|||++||+| +|. |++|||+||.|++.|+|
T Consensus 92 r~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg 170 (219)
T 3n0u_A 92 REVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHG 170 (219)
T ss_dssp HHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTT
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcC
Confidence 9999 886 999999999975 6667788999999999 9999999999999999 776 89999999999999999
Q ss_pred ccccCc--CCcccHHHHHHHHHh
Q psy9547 156 EIEDDI--SKGKTKVVYETLVSK 176 (363)
Q Consensus 156 ~~~~~~--~~~~~~~~~~~~~~~ 176 (363)
+++... .+.+.+..+++.+..
T Consensus 171 ~~~~~~k~~t~k~y~~ie~~~~~ 193 (219)
T 3n0u_A 171 LIQEIPKGWSKKRYLYVEEILRK 193 (219)
T ss_dssp SCSSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCcCcCcCCHHHHHHHHHHHHH
Confidence 987522 113344444444443
No 14
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.96 E-value=8.4e-29 Score=223.62 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhhcCCCC-CCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhC--CCHHHHhcCCHHHHHHHHhccCc
Q psy9547 12 AFQESILTWYKQNARQL-PWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTY--PTIKDFAFDTEDNVLKMWEGLGY 88 (363)
Q Consensus 12 ~~~~~l~~~~~~~~~~l-pw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~--pt~~~la~a~~~el~~~~~~lG~ 88 (363)
..++.+++.|+. + +|+...|||++||++||+|||+++++.+++.+|.+.| |||++|+++++++| +++||
T Consensus 40 ~~l~~l~~~~~~----~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~ 111 (225)
T 2yg9_A 40 PVLAQVTSLCGE----LPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGL 111 (225)
T ss_dssp HHHHHHHHHHCC----CCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTC
T ss_pred HHHHHHHHHcCC----CCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCC
Confidence 355666666653 4 6778899999999999999999999999999999999 99999999999886 67999
Q ss_pred hH-HHHHHHHHHHHhhHHhCC-----CCccc--HHHHhcCCCCcHHHHHHHHHHhcCCc-cccc-cchHHHHHhhhcccc
Q psy9547 89 YS-RVRNFQAGCRQVIEQFGG-----EVPRD--KKQLLSIKGVGDYTAGALASICYNIP-TPAV-DGNVFRIYGRLFEIE 158 (363)
Q Consensus 89 ~~-rA~~l~~~a~~i~~~~~g-----~~p~~--~~~L~~lpGIG~~tA~~il~~~~~~~-~~~v-D~~v~Rvl~Rl~~~~ 158 (363)
++ ||++|+++|+.+.+.... ..|.+ +++|++|||||+|||++||+|++|+| +++| |+||+|+++|++ +
T Consensus 112 ~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~ 189 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P 189 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T
T ss_pred cHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C
Confidence 85 999999999999872110 12443 89999999999999999999999998 7888 999999999998 1
Q ss_pred cCcCCcccHHHHHHHHHhcCCcccHHHHHHH
Q psy9547 159 DDISKGKTKVVYETLVSKTMSQTNAREFNQA 189 (363)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 189 (363)
.+.+++.++.|.|...+..+|.+
T Consensus 190 --------~~~~~~~~e~~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 190 --------GEDWRDVTARWAPYRSLASRYLW 212 (225)
T ss_dssp --------TSCHHHHHHHHTTCHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 12366778889998877666654
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.2e-27 Score=216.41 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=126.7
Q ss_pred CC-ChHHHHHHHHHhhhcchhhHHHHHHHHHHhC------CCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHHHHhhH
Q psy9547 33 SN-NPYYVWISEVMLQQTQVKTVLPYYEKFIKTY------PTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVIE 104 (363)
Q Consensus 33 ~~-dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~------pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a~~i~~ 104 (363)
.+ |||++||++||+|||+++++.+++.+| +.| |||++|+++++++| +++||++ ||++|+++|+.+.+
T Consensus 46 ~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~ 120 (228)
T 3s6i_A 46 EKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS 120 (228)
T ss_dssp TTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc
Confidence 45 999999999999999999999999999 775 99999999999886 6799996 89999999999986
Q ss_pred HhCCCCcc-----------cHHHHhcCCCCcHHHHHHHHHHhcCCc-ccccc-chHHHHHhhhcccccCcCCcccHHHHH
Q psy9547 105 QFGGEVPR-----------DKKQLLSIKGVGDYTAGALASICYNIP-TPAVD-GNVFRIYGRLFEIEDDISKGKTKVVYE 171 (363)
Q Consensus 105 ~~~g~~p~-----------~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD-~~v~Rvl~Rl~~~~~~~~~~~~~~~~~ 171 (363)
|.+|+ .+++|++|||||+|||++||+|++|+| +++|| .+++|+++++++.+. ..+.+.++
T Consensus 121 ---g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~----~~~~~~~~ 193 (228)
T 3s6i_A 121 ---GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPK----IPTKMYVL 193 (228)
T ss_dssp ---TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS----CCCHHHHH
T ss_pred ---CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCC----CCCHHHHH
Confidence 66653 389999999999999999999999998 68885 689999999987653 34577888
Q ss_pred HHHHhcCCcccHHHHHHHHHHHhh
Q psy9547 172 TLVSKTMSQTNAREFNQALMDLGA 195 (363)
Q Consensus 172 ~~~~~~~p~~~~~~~~~~l~~~G~ 195 (363)
+.++.|.|...+..++ |+..++
T Consensus 194 ~~~e~w~P~r~~A~~y--Lw~~~~ 215 (228)
T 3s6i_A 194 KHSEICAPFRTAAAWY--LWKTSK 215 (228)
T ss_dssp HHHGGGTTCHHHHHHH--HHHGGG
T ss_pred HHHHHhCCHHHHHHHH--HHHhCc
Confidence 8999999976554444 555443
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.95 E-value=6.7e-27 Score=218.90 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=131.2
Q ss_pred CCChHHHHHHHHHhhhcchhhHHHHHHHHHHh--------------CCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHH
Q psy9547 33 SNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT--------------YPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAG 98 (363)
Q Consensus 33 ~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~--------------~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~ 98 (363)
..|||++||++||+|||+++++.+++.+|.+. ||||++|+++++++|.+ .++|| ||++|+++
T Consensus 112 ~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~--~g~g~--Ra~~I~~~ 187 (290)
T 3i0w_A 112 RQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDT 187 (290)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH--cCCch--HHHHHHHH
Confidence 48999999999999999999999999999875 79999999999999877 24554 99999999
Q ss_pred HHHhhHHhC-------CCCcccHHHHhcCCCCcHHHHHHHHHHhcCCc-cccccchHHHHHhhhcccccCcCCcccHHHH
Q psy9547 99 CRQVIEQFG-------GEVPRDKKQLLSIKGVGDYTAGALASICYNIP-TPAVDGNVFRIYGRLFEIEDDISKGKTKVVY 170 (363)
Q Consensus 99 a~~i~~~~~-------g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~~ 170 (363)
|+.+.+.+. ...|+.+++|++|||||+|||++|++|++|+| ++|||+||+|++.|+|+.+ ..+++++
T Consensus 188 A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-----~~~~~~i 262 (290)
T 3i0w_A 188 VDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-----DVSLKKI 262 (290)
T ss_dssp HHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-----TCCHHHH
T ss_pred HHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-----CCCHHHH
Confidence 999987431 24567899999999999999999999999997 8899999999999999764 2356788
Q ss_pred HHHH-HhcCCcccHHHHHHHHHHHhhh
Q psy9547 171 ETLV-SKTMSQTNAREFNQALMDLGAT 196 (363)
Q Consensus 171 ~~~~-~~~~p~~~~~~~~~~l~~~G~~ 196 (363)
++.+ +.+-| ..+..++.|+.+|+.
T Consensus 263 ~~~~~~~~~p--~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 263 RDFGREKFGS--LSGFAQQYLFYYARE 287 (290)
T ss_dssp HHHHHHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHhhcch--HHHHHHHHHHHhhhh
Confidence 8887 55544 457778889999885
No 17
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.94 E-value=5.8e-26 Score=218.13 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHH---------------hCCCHHHHhcCCHH
Q psy9547 13 FQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIK---------------TYPTIKDFAFDTED 77 (363)
Q Consensus 13 ~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~---------------~~pt~~~la~a~~~ 77 (363)
.++.+++.|+.. | +| ..|||++||++||+|||+++++.+++.+|++ .||||++|++++.+
T Consensus 134 ~l~~l~~~~~gl-R-~~---~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~e 208 (360)
T 2xhi_A 134 HFQEVAQKFQGV-R-LL---RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVE 208 (360)
T ss_dssp HHHHHHHHSTTC-C-CC---CCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHH
T ss_pred HHHHHHHHcCCC-C-CC---CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHH
Confidence 344555555432 2 22 3699999999999999999999999999998 48999999999764
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhHHhCCC--------Cc--ccHHHHhcCCCCcHHHHHHHHHHhcCCc-cccccch
Q psy9547 78 NVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGE--------VP--RDKKQLLSIKGVGDYTAGALASICYNIP-TPAVDGN 146 (363)
Q Consensus 78 el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~--------~p--~~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD~~ 146 (363)
+ .|+.+||..||++|+++|+.+.+.|+|. +| +.+++|++|||||+|||++|++|++|+| ++|||+|
T Consensus 209 e---~Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDth 285 (360)
T 2xhi_A 209 A---HLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVH 285 (360)
T ss_dssp H---HHHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHH
T ss_pred H---HHHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHH
Confidence 3 4567898669999999999999988775 55 6799999999999999999999999998 8999999
Q ss_pred HHHHHhhhcccccCcC--C---cccHHHHHH-HHHhcCCcccHHHHHHH
Q psy9547 147 VFRIYGRLFEIEDDIS--K---GKTKVVYET-LVSKTMSQTNAREFNQA 189 (363)
Q Consensus 147 v~Rvl~Rl~~~~~~~~--~---~~~~~~~~~-~~~~~~p~~~~~~~~~~ 189 (363)
|.|++.|++++..... . ..+.+.+.+ ..+.|-|...+..++.+
T Consensus 286 V~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw 334 (360)
T 2xhi_A 286 MWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLF 334 (360)
T ss_dssp HHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999865543211 1 223333333 34556665544444333
No 18
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.93 E-value=6e-25 Score=205.32 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=125.2
Q ss_pred CCCChHHHHHHHHHhhhcchhhHHHHHHHHHHh-------------CCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHH
Q psy9547 32 ESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT-------------YPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQA 97 (363)
Q Consensus 32 ~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~-------------~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~ 97 (363)
...|||++||++||+|||+++++.+++.+|.+. ||||++|+++++++| +++||++ ||++|++
T Consensus 109 ~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~ 184 (282)
T 1mpg_A 109 GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIH 184 (282)
T ss_dssp CCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHH
Confidence 458999999999999999999999999999753 789999999999887 6799985 9999999
Q ss_pred HHHHhhHH-hCCCCc----ccHHHHhcCCCCcHHHHHHHHHHhcCCc-cccccchHHHHHhhhcccccCcCCcccHHHHH
Q psy9547 98 GCRQVIEQ-FGGEVP----RDKKQLLSIKGVGDYTAGALASICYNIP-TPAVDGNVFRIYGRLFEIEDDISKGKTKVVYE 171 (363)
Q Consensus 98 ~a~~i~~~-~~g~~p----~~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~~~ 171 (363)
+|+.+.+. ++++.+ +.+++|++|||||+|||++|++|++|+| ++++|.|+.| +++. ..+++.++
T Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~--------~~~~~~~~ 254 (282)
T 1mpg_A 185 LANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP--------GMTPAQIR 254 (282)
T ss_dssp HHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST--------TCCHHHHH
T ss_pred HHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc--------cCCHHHHH
Confidence 99999986 555544 3489999999999999999999999998 8889888766 4441 34677888
Q ss_pred HHHHhcCCcccHHHHHHHH
Q psy9547 172 TLVSKTMSQTNAREFNQAL 190 (363)
Q Consensus 172 ~~~~~~~p~~~~~~~~~~l 190 (363)
+.++.+.|...+..+|.+.
T Consensus 255 ~~~~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 255 RYAERWKPWRSYALLHIWY 273 (282)
T ss_dssp HHHGGGTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999998888888764
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.93 E-value=7.1e-26 Score=212.74 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=132.4
Q ss_pred HHHHHHHHHhhcCCCCCCCC--CCChHHHHHHHHHhhhcchhhHHHHHHHHHHh--------------CCCHHHHhcCCH
Q psy9547 13 FQESILTWYKQNARQLPWRE--SNNPYYVWISEVMLQQTQVKTVLPYYEKFIKT--------------YPTIKDFAFDTE 76 (363)
Q Consensus 13 ~~~~l~~~~~~~~~~lpw~~--~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~--------------~pt~~~la~a~~ 76 (363)
.++.+.+.|+ .++|.. ..|||++||++||+|||+++++.+++.+|.++ ||||++|+++++
T Consensus 97 ~l~~l~~~~~----glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~ 172 (295)
T 2jhn_A 97 KLRMLKNRFY----GFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGV 172 (295)
T ss_dssp HHHHHHHHTT----TCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHcC----CCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCH
Confidence 3445555544 356666 78999999999999999999999999999987 899999999998
Q ss_pred HHHHHHHhccCchH-HHHHHHHHHHHhhHHhCC--CCcc--cHHHHhcCCCCcHHHHHHHHHHhcCCc-ccccc-chHHH
Q psy9547 77 DNVLKMWEGLGYYS-RVRNFQAGCRQVIEQFGG--EVPR--DKKQLLSIKGVGDYTAGALASICYNIP-TPAVD-GNVFR 149 (363)
Q Consensus 77 ~el~~~~~~lG~~~-rA~~l~~~a~~i~~~~~g--~~p~--~~~~L~~lpGIG~~tA~~il~~~~~~~-~~~vD-~~v~R 149 (363)
++| +++||++ ||++|+++|+. ..+++ .+|. .+++|++|||||+|||++|++|++| + ++||| .+++|
T Consensus 173 ~~L----r~~G~~~rKa~~i~~~A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr 245 (295)
T 2jhn_A 173 EGL----RECGLSRRKAELIVEIAKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRR 245 (295)
T ss_dssp HHH----HHTTCCHHHHHHHHHHHTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHH
T ss_pred HHH----HHcCCCHHHHHHHHHHHHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHH
Confidence 876 6799986 89999999988 33332 2443 4899999999999999999999999 8 78885 66777
Q ss_pred HHhhhcccccCcCCcccHHHHHHHHHhcCCcccHHHHHHHH
Q psy9547 150 IYGRLFEIEDDISKGKTKVVYETLVSKTMSQTNAREFNQAL 190 (363)
Q Consensus 150 vl~Rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 190 (363)
++.|+++... ...+++.+++.++.+.|...+..+|.+.
T Consensus 246 ~~~~~~g~~~---~~~~~~~~~~~~e~~~p~r~~a~~~Lw~ 283 (295)
T 2jhn_A 246 AVSRLYFNGE---IQSAEKVREIARERFGRFARDILFYLFL 283 (295)
T ss_dssp HHHHHHSTTC---CCCHHHHHHHHHHHTGGGHHHHHHHHHH
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999976532 1346778888999999877666666554
No 20
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.93 E-value=9.3e-26 Score=191.95 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=119.3
Q ss_pred CCcccCCcccCCccccceeEEEEEEEeC---CceEEEeecCCCccccccccccccCCCC--Cch-HHH-HHHHhhCC-Cc
Q psy9547 220 NTIENFPVKLGKTKVKDVFLLTVVVKTD---TNKYLIQKRPTTGLLSNFYMFLSFESDT--PYT-SQV-EFLSENLP-FK 291 (363)
Q Consensus 220 ~~~~~~p~k~~k~~~~~~~v~~~ii~~~---~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~-~al-rEl~Eelg-l~ 291 (363)
+.+..+|+|++|++.+.+..++++|.++ +|+|||.||+.+++|+|+|+||||+++. +++ +|+ ||+.||+| +.
T Consensus 2 ~~~~~~Pvk~~k~~~~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~ 81 (155)
T 1x51_A 2 SSGSSGPRKASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLP 81 (155)
T ss_dssp CCSCSCTTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CchhhCCCcCCCCCCCeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcc
Confidence 3578899999998888888888888764 4899999999899999999999999998 554 788 99999999 88
Q ss_pred ccccccccccEEEEccceEEEEEEEEEEecCCCC--CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 292 VNLNEKCLGNVKHVFSHLKWNMDVYSGTAKEKTI--PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 292 v~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~~~--~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
+.... .++.+.|.|+|+++++++|.++...+.+ .++.+++|++++++.+++||++++++++.+.+.
T Consensus 82 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 149 (155)
T 1x51_A 82 ATHLR-HLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQGQ 149 (155)
T ss_dssp STTCE-ECCCBCCBCSSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred eeeee-ecceEEEecCCccEEEEEEEEEEcCCCCCCCCCCccEEccHHHhhhcCCCHHHHHHHHHHHhc
Confidence 77666 7888999999999999999998775432 356788999999999999999999999998764
No 21
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.89 E-value=2.9e-23 Score=175.16 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=106.7
Q ss_pred cccCCcccCCcccc-----ceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCccc
Q psy9547 222 IENFPVKLGKTKVK-----DVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVN 293 (363)
Q Consensus 222 ~~~~p~k~~k~~~~-----~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~ 293 (363)
+..+|+|.+|++.+ .+.++++++. .+|+||+.||+.++.++|+|+||||+++. ++.+|+ ||+.||+|+.+.
T Consensus 2 ~~~lP~k~~kk~~~~~~~~~~~~~~~i~~-~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~ 80 (153)
T 3ees_A 2 TDDSAVESKQKKSKIRKGHWIPVVAGFLR-KDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAE 80 (153)
T ss_dssp ------------------CEEEEEEEEEE-ETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEE
T ss_pred CCCccccCccccccccCCceEEEEEEEEE-ECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccc
Confidence 45688887776655 3344455554 45999999999889999999999999998 788888 999999999998
Q ss_pred ccccccccEEEEccceEEEEEEEEEEecCCC--CCCCCCCeeecccccCcCCCChHHHHHHHHHHhhhcc
Q psy9547 294 LNEKCLGNVKHVFSHLKWNMDVYSGTAKEKT--IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKSKGL 361 (363)
Q Consensus 294 ~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~~~ 361 (363)
... .++.+.|.|+|.++.+++|.+...++. ..++.+++|++++++.+++++++++++++.+.+..++
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~ 149 (153)
T 3ees_A 81 VGE-LKLACTHSYGDVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALGL 149 (153)
T ss_dssp CCC-EEEEEEEEETTEEEEEEEEEECEEESCCCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTTC
T ss_pred cCc-eEEEEEEecCCCeEEEEEEEEEECCCCcCCCccceEEEecHHHhhhCCCCcchHHHHHHHHHhhcc
Confidence 877 888899999999999999999887653 3466788999999999999999999999999876653
No 22
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.86 E-value=1.6e-21 Score=162.13 Aligned_cols=127 Identities=11% Similarity=0.168 Sum_probs=107.8
Q ss_pred CccccceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc
Q psy9547 231 KTKVKDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS 307 (363)
Q Consensus 231 k~~~~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s 307 (363)
+..++.+.+++++|.+ +|+||+.||+..+.++|+|+||||+++. ++++|+ ||+.||+|+.+.... .++.+.|.|+
T Consensus 3 ~~~~~~~~~~~~ii~~-~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~ 80 (140)
T 2rrk_A 3 LGSMKMIEVVAAIIER-DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE-YVASHQREVS 80 (140)
T ss_dssp STTSCEEEEEEEEEEE-TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCE-EEEEEEEEET
T ss_pred CCCCccceEEEEEEEc-CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeeccc-EEEEEEEecC
Confidence 3345567777777754 4899999998889999999999999998 778888 999999999988777 8889999999
Q ss_pred ceEEEEEEEEEEecCCC--CCCCCCCeeecccccCcCCCChHHHHHHHHHHhhh
Q psy9547 308 HLKWNMDVYSGTAKEKT--IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKSK 359 (363)
Q Consensus 308 h~~~~l~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~ 359 (363)
|+++.+++|.+...++. ..++.++.|++++++.+++++++++++++.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~r 134 (140)
T 2rrk_A 81 GRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADIPLLEAFMALR 134 (140)
T ss_dssp TEEEEEEEEEESEEEECCCCSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEeeCCCcCCCccceeEEeCHHHHhhCCCChhHHHHHHHHHHHh
Confidence 99999999998876442 23567889999999999999999999999887653
No 23
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.86 E-value=6.6e-22 Score=161.99 Aligned_cols=121 Identities=11% Similarity=0.123 Sum_probs=105.3
Q ss_pred ceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEE
Q psy9547 236 DVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWN 312 (363)
Q Consensus 236 ~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~ 312 (363)
++++++++|.+.+|+||+.||+.++.++|+|+||||+++. ++.+++ ||+.||+|+.+.... .++.+.|.|+|.++.
T Consensus 3 ~~~~~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~-~~~~~~~~~~~~~~~ 81 (129)
T 1mut_A 3 KLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS-LFEKLEYEFPDRHIT 81 (129)
T ss_dssp EEECCCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEEC-CCCCCBCCCSSCEEE
T ss_pred eEEEEEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccce-EEEEEEEecCCceEE
Confidence 3566777777777999999998888999999999999998 778888 999999999988777 788899999999999
Q ss_pred EEEEEEEecCCCC--CCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 313 MDVYSGTAKEKTI--PANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 313 l~~~~~~~~~~~~--~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
+++|.+...++.+ .+..+++|++++++.+++++++++++++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l~~ 128 (129)
T 1mut_A 82 LWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKLKR 128 (129)
T ss_dssp CCCEEEEECSSCCCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHHTC
T ss_pred EEEEEEEccCCccCCcccceeEEeCHHHcccccCCchhHHHHHHHhh
Confidence 9999998776532 35678899999999999999999999988753
No 24
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.85 E-value=1.6e-21 Score=163.01 Aligned_cols=126 Identities=12% Similarity=0.195 Sum_probs=107.5
Q ss_pred cceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccc-cccccEEEEccceE
Q psy9547 235 KDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNE-KCLGNVKHVFSHLK 310 (363)
Q Consensus 235 ~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~-~~l~~v~h~~sh~~ 310 (363)
+...+++++|++.+|+||+.||+.++.++|+|+||||+++. ++.+|+ ||+.||+|+.+.... ..+..+.|.++|++
T Consensus 6 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 85 (144)
T 3r03_A 6 PILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFH 85 (144)
T ss_dssp CEEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSE
T ss_pred ceeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeE
Confidence 34566777777777999999999889999999999999998 788888 999999999987753 15667899999999
Q ss_pred EEEEEEEEEecCCC--CCCCCCCeeecccccCcCCCChHHHHHHHHHHhhhc
Q psy9547 311 WNMDVYSGTAKEKT--IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKSKG 360 (363)
Q Consensus 311 ~~l~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~~ 360 (363)
+.+++|.+....+. ..+..+++|++++++.+++++++++++++.+.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 137 (144)
T 3r03_A 86 LLMPLYACRSWRGRATAREGQTLAWVRAERLREYPMPPADLPLIPILQDWLE 137 (144)
T ss_dssp EEEEEEEECCCBSCCCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC-
T ss_pred EEEEEEEEEecCCccCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhCccc
Confidence 99999999887653 345678899999999999999999999999887643
No 25
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.85 E-value=1.9e-21 Score=162.31 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=102.3
Q ss_pred ccceeEEEEEEEeCCceEEEeecCCCcc--ccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc
Q psy9547 234 VKDVFLLTVVVKTDTNKYLIQKRPTTGL--LSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH 308 (363)
Q Consensus 234 ~~~~~v~~~ii~~~~~~vLl~~R~~~~~--~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh 308 (363)
++.+.+++++|.++ |+||+.||+..+. ++|+|+||||+++. ++.+|+ ||+.||+|+.+.... .+..+.|.|+|
T Consensus 3 ~~~~~~v~~vi~~~-~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~-~~~~~~~~~~~ 80 (140)
T 3gwy_A 3 LKSIEVVAAVIRLG-EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGE-KLLTVHHTYPD 80 (140)
T ss_dssp CSCEEEEEEEEEET-TEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EEEEEECCCSS
T ss_pred ceEEEEEEEEEEeC-CEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEece-EEEEEEEEeCC
Confidence 45567777888774 9999999988887 99999999999998 788888 999999999998887 88899999999
Q ss_pred eEEEEEEEEEEecCCCC--CCCCCCeeecccccCcCCCChHHHHHHHHHHhhhc
Q psy9547 309 LKWNMDVYSGTAKEKTI--PANKTYKLITETQMKKYAFPVPYQKVWKLFTKSKG 360 (363)
Q Consensus 309 ~~~~l~~~~~~~~~~~~--~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~~ 360 (363)
.++.+++|.+....+.+ .+..+++|++++++.+++++++++++++.+.+..+
T Consensus 81 ~~~~~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~~~ 134 (140)
T 3gwy_A 81 FEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAILDWAEADKPIVRKISEQEG 134 (140)
T ss_dssp CCEEEEEEEEEECCSCCCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC---
T ss_pred ceEEEEEEEEEecCCcccccccceeEeccHHHHhhCCCCcccHHHHHHHHhCcC
Confidence 99999999999876533 46678899999999999999999999999987654
No 26
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.85 E-value=2.7e-21 Score=164.67 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=106.0
Q ss_pred CcccCCcccCCccccceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccc-
Q psy9547 221 TIENFPVKLGKTKVKDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNE- 296 (363)
Q Consensus 221 ~~~~~p~k~~k~~~~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~- 296 (363)
....-|++.++++ +...+++++|.+.+|+||+.||+.++.++|+|+||||+++. ++.+|+ ||+.||+|+.+....
T Consensus 14 ~~~~gP~~~~~~~-~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~ 92 (158)
T 3hhj_A 14 AQTQGPGSMPIKS-SLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNL 92 (158)
T ss_dssp --------------CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGC
T ss_pred cccCCCccCCCCC-ceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceE
Confidence 3444566555544 34556666777777999999999889999999999999998 788888 999999999987654
Q ss_pred cccccEEEEccceEEEEEEEEEEecCCC--CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 297 KCLGNVKHVFSHLKWNMDVYSGTAKEKT--IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 297 ~~l~~v~h~~sh~~~~l~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
..+..+.|.|+|+++.+++|.+....+. ..+..+++|++++++.+++++++++++++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~~ 156 (158)
T 3hhj_A 93 FPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNF 156 (158)
T ss_dssp EEEEEEEEECSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHHC
T ss_pred EEEEEEeeccCCcEEEEEEEEEEECCCccCCccccceEEEcHHHHhhCCCCcchHHHHHHHHHh
Confidence 1367788999999999999999876653 3466788999999999999999999999998764
No 27
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=3.6e-20 Score=156.78 Aligned_cols=122 Identities=10% Similarity=0.197 Sum_probs=105.6
Q ss_pred eeEEEEEEEeCCceEEEeecCCC-ccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEE
Q psy9547 237 VFLLTVVVKTDTNKYLIQKRPTT-GLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWN 312 (363)
Q Consensus 237 ~~v~~~ii~~~~~~vLl~~R~~~-~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~ 312 (363)
...++++|.+.+|+||+.||+.. +.++|+|+||||+++. ++.+|+ ||+.||+|+.+.... .++.+.|.|+|.++.
T Consensus 8 ~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~-~~~~~~~~~~~~~~~ 86 (153)
T 3grn_A 8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGD-IAGQVNFELTEKKVI 86 (153)
T ss_dssp EEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCS-EEEEEEEECSSCEEE
T ss_pred EEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecce-EEEEEEEecCCceEE
Confidence 44555667776789999999876 8999999999999998 788899 999999999998877 888999999999999
Q ss_pred EEEEEEEecCCCC---CCCCCCeeecccccCcCC-CChHHHHHHHHHHhhh
Q psy9547 313 MDVYSGTAKEKTI---PANKTYKLITETQMKKYA-FPVPYQKVWKLFTKSK 359 (363)
Q Consensus 313 l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~-~~~a~~~il~~l~~~~ 359 (363)
+.+|.+....+.+ .+..+++|++++++.+++ ++++++++++.+....
T Consensus 87 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~~ 137 (153)
T 3grn_A 87 AIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDREN 137 (153)
T ss_dssp EEEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhccc
Confidence 9999998776533 355678999999999999 9999999999987653
No 28
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.76 E-value=7.6e-19 Score=151.37 Aligned_cols=138 Identities=11% Similarity=0.054 Sum_probs=92.7
Q ss_pred CcCCCCCCCCCCCcccChhhhcCCcccCCcccCCccccceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--
Q psy9547 198 CLFKNPKCKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT-- 275 (363)
Q Consensus 198 C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k~~~~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~-- 275 (363)
|.+.+|.|..||.+..|.... ....++++|.++ |+|||.||..+ +|+|+||||+++.
T Consensus 1 ms~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~ii~~~-~~vLL~~r~~~---~~~w~~PgG~ve~gE 59 (171)
T 3id9_A 1 MSLEGFICKFNRKRRLYIENI-----------------MQVRVTGILIED-EKVLLVKQKVA---NRDWSLPGGRVENGE 59 (171)
T ss_dssp --------------------------------------CEEEEEEEEEET-TEEEEEECSST---TCCEECCEEECCTTC
T ss_pred CCccccccccChhhhhccCCc-----------------eEEEEEEEEEEC-CEEEEEEEECC---CCeEECCCccCCCCC
Confidence 456789999999988774321 122345555555 89999999663 8999999999998
Q ss_pred CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEEEEEEecCCCC---------CCCCCCeeecccccCcCCCC
Q psy9547 276 PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDVYSGTAKEKTI---------PANKTYKLITETQMKKYAFP 345 (363)
Q Consensus 276 ~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~~~---------~~~~~~~W~~~~el~~~~~~ 345 (363)
++.+|+ ||+.||+|+.+.... .+..+.+.+++......+|.+....+.. .+..+++|++++++.+++++
T Consensus 60 s~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 138 (171)
T 3id9_A 60 TLEEAMIREMREETGLEVKIKK-LLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFS 138 (171)
T ss_dssp CHHHHHHHHHHHHHCCCEEEEE-EEEEEEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCC
T ss_pred CHHHHHHHHHHHHHCCccccce-EEEEEcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCC
Confidence 888899 999999999988777 7778888888877777788887665421 34578899999999999999
Q ss_pred hHHHHHHHHHHh
Q psy9547 346 VPYQKVWKLFTK 357 (363)
Q Consensus 346 ~a~~~il~~l~~ 357 (363)
++++++++....
T Consensus 139 ~~~~~~l~~~~~ 150 (171)
T 3id9_A 139 ETFINLISGGLA 150 (171)
T ss_dssp TTCSHHHHHGGG
T ss_pred HHHHHHHHHhhc
Confidence 999999987643
No 29
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.76 E-value=2e-18 Score=147.63 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=100.6
Q ss_pred eeEEEEEEEeCC-ceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEc--cceE
Q psy9547 237 VFLLTVVVKTDT-NKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVF--SHLK 310 (363)
Q Consensus 237 ~~v~~~ii~~~~-~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~--sh~~ 310 (363)
..+++++|.+++ ++||+.||+ ++.|+|.|+||||+++. ++.+|+ ||+.||+|+.+.... .+..+.|.+ ++..
T Consensus 10 ~~~v~~vi~~~~~~~vLL~~r~-~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~ 87 (161)
T 3exq_A 10 ELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVT-FCGTCEWFDDDRQHR 87 (161)
T ss_dssp EEEEEEEEBCTTTCCEEEECCC-CCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCE-EEEEEEEECSSCSSE
T ss_pred eEEEEEEEEeCCCCEEEEEEcc-CCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCc-EEEEEecccCCCCeE
Confidence 344555666664 599999997 77899999999999998 888899 999999999998777 888888988 6778
Q ss_pred EEEEEEEEEecCCCC--CCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 311 WNMDVYSGTAKEKTI--PANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~--~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
+.+.+|.+....+.+ .+..+++|++++++.++++++.++++++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 136 (161)
T 3exq_A 88 KLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAASLPEFLQVFTG 136 (161)
T ss_dssp EEEEEEEECCEESCCCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred EEEEEEEEeccCCccCCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence 889999998765533 35678899999999999999999999999876
No 30
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.75 E-value=2.9e-18 Score=148.92 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=101.6
Q ss_pred ccceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc--
Q psy9547 234 VKDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH-- 308 (363)
Q Consensus 234 ~~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh-- 308 (363)
++...++++++++++|+||+.|| ..+.++|+|+||||+++. ++++|+ ||+.||+|+.+.... .++.+.|.+++
T Consensus 21 m~~~~~~~~~vi~~~~~vLL~~r-~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~ 98 (176)
T 3q93_A 21 MGASRLYTLVLVLQPQRVLLGMK-KRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALH-KVGQIVFEFVGEP 98 (176)
T ss_dssp --CEEEEEEEEEECSSEEEEEEE-CSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCE-EEEEEEEEETTCS
T ss_pred CCCCcEEEEEEEEeCCEEEEEEE-cCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeE-EEEEEEEEcCCCC
Confidence 44455666666666699999999 456789999999999998 888999 999999999998777 88899999987
Q ss_pred eEEEEEEEEEEecCCCC--CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 309 LKWNMDVYSGTAKEKTI--PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 309 ~~~~l~~~~~~~~~~~~--~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
..+.+++|.+....+.+ .++.+.+|++++++.+++++++++++++.+.+.
T Consensus 99 ~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 150 (176)
T 3q93_A 99 ELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQK 150 (176)
T ss_dssp CEEEEEEEEESCEESCCCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTT
T ss_pred cEEEEEEEEEECCCCCcCCCcceeeEEeeHHHccccccCcchHHHHHHHHcC
Confidence 56778999998665533 345667999999999999999999999998764
No 31
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.73 E-value=9.8e-18 Score=143.53 Aligned_cols=122 Identities=10% Similarity=0.169 Sum_probs=86.7
Q ss_pred ccccceeEEEEEEEeCCceEEEeecCC-CccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccc------c
Q psy9547 232 TKVKDVFLLTVVVKTDTNKYLIQKRPT-TGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLG------N 301 (363)
Q Consensus 232 ~~~~~~~v~~~ii~~~~~~vLl~~R~~-~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~------~ 301 (363)
+.++...++++++.+ +|+|||.||+. .+.++|+|+||||+++. ++++|+ ||+.||+|+.+.... .+. .
T Consensus 23 ~~~~~~~~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~ 100 (165)
T 3oga_A 23 NAMRQRTIVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSD-ITPWTFRDDI 100 (165)
T ss_dssp -CCEEEEEEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEE-EEEEEEEEEE
T ss_pred CCcceEEEEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccc-eeeeeeecce
Confidence 334445555555555 48999999974 46899999999999998 888899 999999999886554 332 1
Q ss_pred EEEEccceEE-----EEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHH
Q psy9547 302 VKHVFSHLKW-----NMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLF 355 (363)
Q Consensus 302 v~h~~sh~~~-----~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l 355 (363)
..|.|++..+ .+.+|.+....+.. .+..+++|++++++.+++++++++++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 162 (165)
T 3oga_A 101 RIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALK 162 (165)
T ss_dssp EEEEC--CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHT
T ss_pred eeEecCCCCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhhCCCCHHHHHHHHHh
Confidence 2578887653 35677777665432 245678999999999999999999998764
No 32
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.72 E-value=8.1e-18 Score=138.49 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred cceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc----
Q psy9547 235 KDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS---- 307 (363)
Q Consensus 235 ~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s---- 307 (363)
+....++++|.++ |+||+.||+. |+|+||||+++. ++.+|+ ||+.||+|+++.... .++.+.|.|+
T Consensus 2 ~~~~~~~~vi~~~-~~vLl~~r~~-----~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~~~ 74 (134)
T 2pbt_A 2 KKEFSAGGVLFKD-GEVLLIKTPS-----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD-YIGEIHYWYTLKGE 74 (134)
T ss_dssp EEEEEEEEEEEET-TEEEEEECTT-----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEE-EEEEEEEEEEETTE
T ss_pred ccceEEEEEEEEC-CEEEEEEeCC-----CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEee-eeeEEEEEeeCCCc
Confidence 3445666777775 8999999964 999999999998 788888 999999999998777 8888999998
Q ss_pred ceEEEEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 308 HLKWNMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 308 h~~~~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
+.+..+++|.+...++.. .+..+++|++++++.++.++++++++++.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 128 (134)
T 2pbt_A 75 RIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKL 128 (134)
T ss_dssp EEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEecCCCcCCCcceeEEEEEcHHHHHhhhcchhHHHHHHHHHHH
Confidence 678889999998765422 256788999999999999999999999887654
No 33
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.72 E-value=1.6e-17 Score=135.43 Aligned_cols=116 Identities=8% Similarity=-0.083 Sum_probs=97.4
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDV 315 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~ 315 (363)
.++++|.+.+|+||+.||.. |+|+||||+++. ++.+|+ ||+.||+|+.+.... .++.+.|.++|.+..+++
T Consensus 4 ~~~~vi~~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (126)
T 1vcd_A 4 GAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL-PLYPTRYVNPKGVEREVH 77 (126)
T ss_dssp EEEEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEE-EEEEEEEECTTSCEEEEE
T ss_pred EEEEEEEcCCCEEEEEEECC-----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeecc-EEeEEEEecCCceEEEEE
Confidence 45566777668999999964 889999999998 788888 999999999998777 888899999999988999
Q ss_pred EEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhhhc
Q psy9547 316 YSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKSKG 360 (363)
Q Consensus 316 ~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~~~ 360 (363)
|.+....+.. .+..+++|++++++.++.+++.++++++.+.+...
T Consensus 78 ~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~l~ 125 (126)
T 1vcd_A 78 WFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLP 125 (126)
T ss_dssp EEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHSC
T ss_pred EEEEEcCCCCCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHhcC
Confidence 9987665422 34568899999999999999999999998876543
No 34
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.70 E-value=3.4e-17 Score=138.47 Aligned_cols=118 Identities=8% Similarity=0.124 Sum_probs=92.7
Q ss_pred eeEEEEEEEeCCce----EEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc-c
Q psy9547 237 VFLLTVVVKTDTNK----YLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS-H 308 (363)
Q Consensus 237 ~~v~~~ii~~~~~~----vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s-h 308 (363)
...++++|.++ ++ +|+.+|+.++ ++| |+||||++++ ++++|+ ||+.||+|+.+.... .+....|.++ |
T Consensus 8 ~~~~~~ii~~~-~~~~~~vLl~~r~~~~-~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~ 83 (155)
T 2b06_A 8 ILTNICLIEDL-ETQRVVMQYRAPENNR-WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQ-LVGIKNWPLDTG 83 (155)
T ss_dssp EEEEEEEEEET-TTTEEEEEEEC------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCE-EEEEEEEECTTS
T ss_pred EEEEEEEEEEC-CCCeEEEEEEECCCCC-CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCc-EEEEEeeccCCC
Confidence 34555566664 77 9999997766 888 9999999998 788888 999999999988776 7777777774 6
Q ss_pred eEEEEEEEEEEecCCC--CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 309 LKWNMDVYSGTAKEKT--IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 309 ~~~~l~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
.++.+++|.+....+. ..++.+++|++++++.+++++++++++++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 135 (155)
T 2b06_A 84 GRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEAP 135 (155)
T ss_dssp CEEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHCT
T ss_pred ceEEEEEEEEEecCCCCCCCcceeeEEeeHHHhhhCCCChhHHHHHHHHhCC
Confidence 7888999998866542 2456778999999999999999999999888654
No 35
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.70 E-value=4.7e-17 Score=138.43 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=95.4
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEc--cceEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVF--SHLKWNM 313 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~--sh~~~~l 313 (363)
.++++|.+ +|+|||.||...+ ++|+|+||||+++. ++.+|+ ||+.||+|+.+.... .+..+.|.+ ++.++.+
T Consensus 31 ~v~~vi~~-~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~ 107 (157)
T 4dyw_A 31 GCGAAIVR-DGRILLIKRKRAP-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT-LLCVVDHIDAANGEHWVA 107 (157)
T ss_dssp EEEEEEEE-TTEEEEEEECSSS-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCE-EEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEE-CCEEEEEEecCCC-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCc-EEEEEEeeccCCCcEEEE
Confidence 44455556 4899999997655 89999999999998 888999 999999999998877 888888988 5778888
Q ss_pred EEEEEEecCCCC-----CCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 314 DVYSGTAKEKTI-----PANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 314 ~~~~~~~~~~~~-----~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
.+|.+....+.. .+..+++|++++++.+ .+++..+++++.+.+
T Consensus 108 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~l~~~~~~~l~~l~~ 155 (157)
T 4dyw_A 108 PVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ-PLTHATRIALEQVTR 155 (157)
T ss_dssp EEEEESEEESCCCCSCTTTEEEEEEEETTSCCS-SBCHHHHHHHHHHC-
T ss_pred EEEEEEEcCCCcccCCCCcEeEEEEECHHHccc-ccCHHHHHHHHHHHh
Confidence 999998765432 2456789999999999 899999999998864
No 36
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.69 E-value=3.2e-17 Score=136.01 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=88.1
Q ss_pred EEE-EEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc----eE
Q psy9547 239 LLT-VVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH----LK 310 (363)
Q Consensus 239 v~~-~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh----~~ 310 (363)
++| +||.++ |+|||.||+. |.|+||||++|+ ++.+|+ ||++||+|+++.... .++.+.|.|+. ..
T Consensus 5 ~aag~vv~~~-~~vLL~~r~~-----g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~ 77 (134)
T 3i7u_A 5 FSAGGVLFKD-GEVLLIKTPS-----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD-YIGEIHYWYTLKGERIF 77 (134)
T ss_dssp EEEEEEEEET-TEEEEEECTT-----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEE-EEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEC-CEEEEEEeCC-----CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEee-eeeeeeEEecCCCceEE
Confidence 444 455554 9999999953 789999999999 899999 999999999998777 77777776642 23
Q ss_pred EEEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 311 WNMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
..+++|.+...++.+ .++.+++|++++|+.++...+.++.+++.+.+
T Consensus 78 ~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~ 127 (134)
T 3i7u_A 78 KTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALK 127 (134)
T ss_dssp EEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhcCChHHHHHHHHHHH
Confidence 456778888766533 36788899999999998888889999887654
No 37
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.69 E-value=2.8e-17 Score=142.73 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=97.3
Q ss_pred EEEEEEEeCCceEEEeecCCCc-cccccccc-cccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTG-LLSNFYMF-LSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNM 313 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~-~~~glWEF-Pggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l 313 (363)
.++++|.+.+|++|+.+|...+ .++|+|+| |||+++. ++.+|+ ||+.||+|+.+.... .++.+.|.+++.++.+
T Consensus 39 ~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~ 117 (180)
T 2fkb_A 39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFA-EHGQFYFEDKNCRVWG 117 (180)
T ss_dssp EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCE-EEEEEEEEETTEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceE-EEEEEEecCCCceEEE
Confidence 4445566667899999997654 56999999 9999988 788888 999999999887666 7888899999999999
Q ss_pred EEEEEEecCC-C--CCCCCCCeeecccccCcC--CCChHHHHHHHHHHhhh
Q psy9547 314 DVYSGTAKEK-T--IPANKTYKLITETQMKKY--AFPVPYQKVWKLFTKSK 359 (363)
Q Consensus 314 ~~~~~~~~~~-~--~~~~~~~~W~~~~el~~~--~~~~a~~~il~~l~~~~ 359 (363)
++|.+..... . ..+..++.|++++++.++ +|++.+.++++.+....
T Consensus 118 ~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~~ 168 (180)
T 2fkb_A 118 ALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRN 168 (180)
T ss_dssp EEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHHC
T ss_pred EEEEEecCCCcCCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHhh
Confidence 9999984321 1 124467899999999998 89999999998876554
No 38
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.67 E-value=1.3e-16 Score=140.02 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=96.2
Q ss_pred ceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc----
Q psy9547 236 DVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH---- 308 (363)
Q Consensus 236 ~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh---- 308 (363)
...+++++|.++ |+||+.||+. +|+|+||||+++. ++++|+ ||+.||+|+++.... .++.+.|.+++
T Consensus 3 ~~~v~~~vi~~~-~~vLL~~r~~----~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~ 76 (188)
T 3fk9_A 3 LQRVTNCIVVDH-DQVLLLQKPR----RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPE-LKGIFSMVIFDEGKI 76 (188)
T ss_dssp CCEEEEEEEEET-TEEEEEECTT----TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCE-EEEEEEEEEEETTEE
T ss_pred ceEEEEEEEEEC-CEEEEEEeCC----CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCce-EEEEEEEEecCCCcc
Confidence 345677777765 8999999963 7899999999998 888899 999999999988777 77888888865
Q ss_pred -eEEEEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 309 -LKWNMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 309 -~~~~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
.++.+.+|.+....+.+ .+..+++|++++++.++++++.++.+++.+.+.
T Consensus 77 ~~~~~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~ 130 (188)
T 3fk9_A 77 VSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEEEEESCEESCCCSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred eEEEEEEEEEEECCCCCCcCCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence 34578889888665533 234578999999999999999999999998765
No 39
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.66 E-value=5.7e-17 Score=135.68 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=93.0
Q ss_pred ccCCccccceeEEEEEEEeC-CceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE
Q psy9547 228 KLGKTKVKDVFLLTVVVKTD-TNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK 303 (363)
Q Consensus 228 k~~k~~~~~~~v~~~ii~~~-~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~ 303 (363)
|.++........++++|.++ +|+||+.||+. |+|+||||+++. ++++|+ ||+.||+|+.+.... .++.+.
T Consensus 9 k~~~~~~~~~~~~~~vi~~~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 82 (148)
T 2azw_A 9 REETLTYQTRYAAYIIVSKPENNTMVLVQAPN-----GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC-YLGEAD 82 (148)
T ss_dssp CCSSSCCEECCEEEEECEEGGGTEEEEEECTT-----SCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEE-EEEEEE
T ss_pred CccCcceeeeeEEEEEEECCCCCeEEEEEcCC-----CCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeee-EEEEEE
Confidence 33344444444555666654 58999999952 899999999998 778888 999999999987766 666553
Q ss_pred ------EEccceEEEEEEEEEEecCCC---CCCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 304 ------HVFSHLKWNMDVYSGTAKEKT---IPANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 304 ------h~~sh~~~~l~~~~~~~~~~~---~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
|..+|.++.+++|.+....+. ..+..+++|++++++.++.+++.++++++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 145 (148)
T 2azw_A 83 EYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLA 145 (148)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhhhcchhHHHHHHHHHH
Confidence 223456777889998876432 235568899999999999999999999988764
No 40
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.66 E-value=6e-17 Score=137.45 Aligned_cols=119 Identities=9% Similarity=0.189 Sum_probs=93.2
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCccc--ccccccccEEEEccce---
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVN--LNEKCLGNVKHVFSHL--- 309 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~--~~~~~l~~v~h~~sh~--- 309 (363)
..+.++|.+.+++||+.||... .++|+|+||||+++. ++++|+ ||+.||+|+.+. ... .++.+.|.|+|.
T Consensus 19 ~~v~~vi~~~~~~vLl~~r~~~-~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~ 96 (160)
T 1rya_A 19 VSLDFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQ-FYGVWQHFYDDNFSG 96 (160)
T ss_dssp EEEEEEEECTTSCEEEEEECSS-SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSE-EEEEEEEEESSBTTB
T ss_pred EEEEEEEEcCCCEEEEEeccCC-CCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccce-EEEEEeEEEcccccC
Confidence 3455566665689999999764 479999999999998 788888 999999999864 445 778889999875
Q ss_pred -----EEEEEEEEEEecCCCC----CCCCCCeeecccccCcCCC-ChHHHHHHHHHHhh
Q psy9547 310 -----KWNMDVYSGTAKEKTI----PANKTYKLITETQMKKYAF-PVPYQKVWKLFTKS 358 (363)
Q Consensus 310 -----~~~l~~~~~~~~~~~~----~~~~~~~W~~~~el~~~~~-~~a~~~il~~l~~~ 358 (363)
++.+++|.+....+.+ .+..+++|++++++.++++ .+..+.+++.....
T Consensus 97 ~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~~~~ 155 (160)
T 1rya_A 97 TDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRT 155 (160)
T ss_dssp SSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHHHHT
T ss_pred CCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHHHHhhc
Confidence 7888999998765422 3556789999999999875 56667777665543
No 41
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.66 E-value=2.6e-17 Score=144.83 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=93.9
Q ss_pred CCCCCCcccChhhhcCCcccCCcccCCccccceeEEEEEEEeCCc--eEEEeecCCC-ccccccccccccCCCC--CchH
Q psy9547 205 CKECPLSRFCSAYKNNTIENFPVKLGKTKVKDVFLLTVVVKTDTN--KYLIQKRPTT-GLLSNFYMFLSFESDT--PYTS 279 (363)
Q Consensus 205 C~~Cpl~~~C~~~~~~~~~~~p~k~~k~~~~~~~v~~~ii~~~~~--~vLl~~R~~~-~~~~glWEFPggk~e~--~~~~ 279 (363)
|..+|+.+.|.++..+....+|.+.++.+.. ...+++++++.+| +||+.||... +.++|.|+||||+++. ++++
T Consensus 3 ~p~~P~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~ 81 (194)
T 1nqz_A 3 APHDPLDDIQADPWALWLSGRTRTALELPHY-RRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQ 81 (194)
T ss_dssp -CCCHHHHHHTCTTCCCBCC----------C-EEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHH
T ss_pred CCCCcCCHHHHHHHHHHHhhcChhhccCCCC-ceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHH
Confidence 5678999999999999999999876554433 3344444446657 8999999654 6789999999999998 7888
Q ss_pred HH-HHHHhhCCCcccccccccccEEEEccceEEEEEEEEEEecCC-C-----CCCCCCCeeeccccc
Q psy9547 280 QV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDVYSGTAKEK-T-----IPANKTYKLITETQM 339 (363)
Q Consensus 280 al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~-~-----~~~~~~~~W~~~~el 339 (363)
|+ ||+.||+|+++.... .++.+.|.+++....+++|.+....+ . ..+..++.|++++++
T Consensus 82 aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el 147 (194)
T 1nqz_A 82 AALREAQEEVALDPAAVT-LLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAEL 147 (194)
T ss_dssp HHHHHHHHHHCCCGGGCE-EEEECCCEEETTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHH
T ss_pred HHHHHHHHHHCCCccceE-EEEEccCccCCCCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHh
Confidence 88 999999999988776 77777777777777888998887521 1 124457899999999
No 42
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.66 E-value=1.1e-16 Score=134.01 Aligned_cols=117 Identities=10% Similarity=0.180 Sum_probs=90.0
Q ss_pred EEEEEEEeC-CceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCccccccc-cc-----------ccE
Q psy9547 239 LLTVVVKTD-TNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEK-CL-----------GNV 302 (363)
Q Consensus 239 v~~~ii~~~-~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~-~l-----------~~v 302 (363)
.+.++|.+. +|++|+.||+.. .|+|+||||+++. ++.+|+ ||+.||+|+.+..... .+ ...
T Consensus 11 ~v~~~i~~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (150)
T 2o1c_A 11 SILVVIYAQDTKRVLMLQRRDD---PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHL 87 (150)
T ss_dssp EEEEEEEETTTCEEEEEECSSS---TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGGG
T ss_pred EEEEEEEeCCCCEEEEEEecCC---CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeeccc
Confidence 445566664 389999999664 6899999999998 788888 9999999998865310 11 122
Q ss_pred EEEcc--ceEEEEEEEEEEecCCC---CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 303 KHVFS--HLKWNMDVYSGTAKEKT---IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 303 ~h~~s--h~~~~l~~~~~~~~~~~---~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
.|.|+ +.++.+++|.+....+. ..+..+++|++++++.++.++++++++++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 148 (150)
T 2o1c_A 88 RHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN 148 (150)
T ss_dssp GGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred ccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence 23444 56788899999887542 2467889999999999999999999999888653
No 43
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.65 E-value=1.8e-16 Score=134.30 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=86.3
Q ss_pred eeEEEEEEEeCCceEEEeecCC---CccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc-e
Q psy9547 237 VFLLTVVVKTDTNKYLIQKRPT---TGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH-L 309 (363)
Q Consensus 237 ~~v~~~ii~~~~~~vLl~~R~~---~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh-~ 309 (363)
...++++|.+.+|++|+.+|.. .+.++|+|+||||.++. ++.+|+ ||+.||+|+.+.... .++.+.|.|++ .
T Consensus 13 ~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~l~~~~~~~~~~~ 91 (159)
T 1sjy_A 13 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVK-FLGAYLGRFPDGV 91 (159)
T ss_dssp EEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEE-EEEEEEEECTTSC
T ss_pred EEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeE-EEEEEecccCCCc
Confidence 3445556666668999999975 56788999999999998 788888 999999999988777 88899999998 7
Q ss_pred EEEEEEEEEEecCCC-C-----CCCCCCeeecccccCcCCCC
Q psy9547 310 KWNMDVYSGTAKEKT-I-----PANKTYKLITETQMKKYAFP 345 (363)
Q Consensus 310 ~~~l~~~~~~~~~~~-~-----~~~~~~~W~~~~el~~~~~~ 345 (363)
++.+++|.+....+. + .+..++.|++++++.++..+
T Consensus 92 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 133 (159)
T 1sjy_A 92 LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAA 133 (159)
T ss_dssp EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred eEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhc
Confidence 889999999886543 2 23457899999999875443
No 44
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.63 E-value=4.8e-16 Score=128.57 Aligned_cols=117 Identities=8% Similarity=-0.002 Sum_probs=90.7
Q ss_pred EEEEEEEeC---CceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccc---cccccEEEEccce
Q psy9547 239 LLTVVVKTD---TNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNE---KCLGNVKHVFSHL 309 (363)
Q Consensus 239 v~~~ii~~~---~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~---~~l~~v~h~~sh~ 309 (363)
.+.++|.+. +++||+.||+.+ +|+|+||||++++ ++++|+ ||+.||+|+.+.... ..+..+.|.+++.
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQASYP---PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGK 81 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEESST---TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTE
T ss_pred EEEEEEEEecCCCcEEEEEEccCC---CCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCC
Confidence 344444443 368999999633 5899999999999 788888 999999999554332 1445677888888
Q ss_pred EEEEEEEEEEecCC-C---CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 310 KWNMDVYSGTAKEK-T---IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 310 ~~~l~~~~~~~~~~-~---~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
++.+++|.+....+ . ..+..+++|++++++.++.+++.++++++.+.+.
T Consensus 82 ~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 134 (138)
T 1ktg_A 82 PKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAF 134 (138)
T ss_dssp EEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHH
Confidence 99999999988762 2 1244678999999999999999999999888654
No 45
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.62 E-value=4.7e-16 Score=130.92 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=92.9
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc--ceEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS--HLKWNM 313 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s--h~~~~l 313 (363)
+++++|+..+|+||+.||...+. +|+|+||||++++ ++++|+ ||+.||+|+.+.... .++.+.|.++ +.++.+
T Consensus 9 ~~v~~ii~~~~~vLl~~r~~~~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~ 86 (153)
T 2b0v_A 9 VTVAAVIEQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV-LTGIYHWTCASNGTTYLR 86 (153)
T ss_dssp EEEEEECEETTEEEEEEECSSSS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEE-EEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEeeCCEEEEEEEcCCCC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccce-EEEEEEEeCCCCCcEEEE
Confidence 44444444458999999987777 9999999999998 788888 999999999988776 7777778887 556777
Q ss_pred EEEEEEecCCC-----CCCCCCCeeecccccCc---CCCChHHHHHHHHHHhh
Q psy9547 314 DVYSGTAKEKT-----IPANKTYKLITETQMKK---YAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 314 ~~~~~~~~~~~-----~~~~~~~~W~~~~el~~---~~~~~a~~~il~~l~~~ 358 (363)
.+|.+....+. ..+..+++|++++++.+ ...++..+++++.+.+.
T Consensus 87 ~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~~~ 139 (153)
T 2b0v_A 87 FTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAG 139 (153)
T ss_dssp EEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHHhC
Confidence 88888765432 12446789999999998 46788888888887654
No 46
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.58 E-value=2.7e-15 Score=126.83 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=79.0
Q ss_pred eeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccE-----EEEccc
Q psy9547 237 VFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNV-----KHVFSH 308 (363)
Q Consensus 237 ~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v-----~h~~sh 308 (363)
...++++|.+.+|+||+.+|. +|+|+||||+++. ++.+|+ ||+.||+|+++.... .++.+ .|.|++
T Consensus 21 ~~~v~~ii~~~~~~vLL~~r~-----~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~ 94 (153)
T 3eds_A 21 XPSVAAVIKNEQGEILFQYPG-----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKK-QKGVFGGKEYRYTYSN 94 (153)
T ss_dssp EEEEEEEEBCTTCCEEEECC--------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEE-EEEEECSGGGEEECTT
T ss_pred eeeEEEEEEcCCCeEEEEEcC-----CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeee-EEEEecccceeeecCC
Confidence 345566677777899999996 8999999999998 888999 999999999987766 55544 788887
Q ss_pred e---EEEEEEEEEEecCCCC----CCCCCCeeecccccCcCCCChHH
Q psy9547 309 L---KWNMDVYSGTAKEKTI----PANKTYKLITETQMKKYAFPVPY 348 (363)
Q Consensus 309 ~---~~~l~~~~~~~~~~~~----~~~~~~~W~~~~el~~~~~~~a~ 348 (363)
. ++.+.+|.+....+.. .+..+++|++++++.++.+|-+.
T Consensus 95 ~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~p~ 141 (153)
T 3eds_A 95 GDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYPD 141 (153)
T ss_dssp SCEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCCG
T ss_pred CCeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchhcccCcc
Confidence 4 4467888888765432 35578899999999998876543
No 47
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.58 E-value=9.1e-15 Score=124.21 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=81.3
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccc--------------
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLG-------------- 300 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~-------------- 300 (363)
.+++++|.++ |+|||.||.. .|.|+||||+++. ++.+|+ ||++||+|+++.... .+.
T Consensus 7 ~~v~~vi~~~-~~vLL~~r~~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~ 80 (159)
T 3f6a_A 7 FTVSVFIVCK-DKVLLHLHKK----AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYN-PIDINLKKSCDLSGEKL 80 (159)
T ss_dssp EEEEEEEEET-TEEEEEECSS----SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECC-CCCHHHHHHHHHTTCEE
T ss_pred EEEEEEEEEC-CEEEEEEcCC----CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecc-ccccccccccccccccc
Confidence 4555666664 8999999964 6899999999998 888999 999999999887655 442
Q ss_pred ------cEEEEccceEEEE-EEEEEEecCCCC----CCCCCCeeecccccCcCCCChHHHH-HHHHHH
Q psy9547 301 ------NVKHVFSHLKWNM-DVYSGTAKEKTI----PANKTYKLITETQMKKYAFPVPYQK-VWKLFT 356 (363)
Q Consensus 301 ------~v~h~~sh~~~~l-~~~~~~~~~~~~----~~~~~~~W~~~~el~~~~~~~a~~~-il~~l~ 356 (363)
...|.++..+..+ .+|.+....+.. .+..+++|++++++.++++.+++.. +.+.+.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 148 (159)
T 3f6a_A 81 LINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEAL 148 (159)
T ss_dssp ECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHH
T ss_pred ccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHHH
Confidence 1234444333333 578888766522 4667899999999999995555555 444443
No 48
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.58 E-value=5e-15 Score=125.59 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=83.2
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE------------
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK------------ 303 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~------------ 303 (363)
+++++|.+ +|+||+.||+. .|+|+||||++|+ ++++|+ ||+.||+|+++.... .+..+.
T Consensus 3 ~~~~vi~~-~~~vLL~~r~~----~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (156)
T 1k2e_A 3 VTSGVLVE-NGKVLLVKHKR----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG-FTYGIIDENAVERPMPLV 76 (156)
T ss_dssp EEEEECEE-TTEEEEEECTT----TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECC-CCCCCBSSSEEECCCCSE
T ss_pred EEEEEEEE-CCEEEEEEEcC----CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceecc-ceeeecccccccccccce
Confidence 45667777 58999999964 6899999999999 888999 999999999987655 432221
Q ss_pred -----EEccc-eEEEEE-EEEEEecCCCCCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 304 -----HVFSH-LKWNMD-VYSGTAKEKTIPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 304 -----h~~sh-~~~~l~-~~~~~~~~~~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
+.|+. .++.+. +|.++..++ +..+++|++++|+.++++++.++++++.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~f~~~~~~~---e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 135 (156)
T 1k2e_A 77 ILEEVVKYPEETHIHFDLIYLVKRVGG---DLKNGEWIDVREIDRIETFPNVRKVVSLALST 135 (156)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEEEEEE---CCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHH
T ss_pred eeeeeecCCCCceEEEEEEEEEEecCC---cEeeeEEeCHHHHhcCCCChHHHHHHHHHHHH
Confidence 12332 333333 466765543 46788999999999999999999999887653
No 49
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.58 E-value=5.5e-15 Score=129.60 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=85.6
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDV 315 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~ 315 (363)
+++++|.+ +|+|||.+|...+ ..|+|+||||+++. ++++|+ ||+.||+|+.+.... .+. .|.+++.+..+++
T Consensus 42 ~v~~ii~~-~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~--~~~~~~~~~~~~~ 116 (189)
T 3cng_A 42 IVGCIPEW-ENKVLLCKRAIAP-YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRE-LYA--VYSLPHISQVYML 116 (189)
T ss_dssp EEEEEEEE-TTEEEEEEESSSS-STTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EEE--EEEEGGGTEEEEE
T ss_pred EEEEEEEe-CCEEEEEEccCCC-CCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccce-eEE--EEecCCCcEEEEE
Confidence 44455555 5899999996644 48999999999998 788888 999999999987654 432 3778888888999
Q ss_pred EEEEecCCCC---CCCCCCeeecccccC--cCCCChHHHHHHHHHH
Q psy9547 316 YSGTAKEKTI---PANKTYKLITETQMK--KYAFPVPYQKVWKLFT 356 (363)
Q Consensus 316 ~~~~~~~~~~---~~~~~~~W~~~~el~--~~~~~~a~~~il~~l~ 356 (363)
|.+....+.. .+..+++|++++++. .+.++.....+.+.+.
T Consensus 117 f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~ 162 (189)
T 3cng_A 117 FRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYME 162 (189)
T ss_dssp EEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHHHHHH
Confidence 9998876532 244578999999998 6777766555444443
No 50
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.57 E-value=1.1e-15 Score=131.54 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=93.1
Q ss_pred EEEEEEEeCCceEEEeecCC-Ccccccccc-ccccCCCC--CchHHH-HHHHhhCCCcccccc-cccccEE-EEccceEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPT-TGLLSNFYM-FLSFESDT--PYTSQV-EFLSENLPFKVNLNE-KCLGNVK-HVFSHLKW 311 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~-~~~~~glWE-FPggk~e~--~~~~al-rEl~Eelgl~v~~~~-~~l~~v~-h~~sh~~~ 311 (363)
.++++|.+.+|++|+.||.. .+.++|+|+ ||||+++. ++.+|+ ||+.||+|+.+.... ..+.++. |.+++..
T Consensus 36 ~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~- 114 (171)
T 1q27_A 36 VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSS- 114 (171)
T ss_dssp EEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCSS-
T ss_pred EEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCcc-
Confidence 44455666668999999954 467899999 99999998 788888 999999999887632 1556666 7777666
Q ss_pred EEEEEEEEecCCC----CCCCCCCeeecccccC--cCCCChHHHHHHHHHHhhhc
Q psy9547 312 NMDVYSGTAKEKT----IPANKTYKLITETQMK--KYAFPVPYQKVWKLFTKSKG 360 (363)
Q Consensus 312 ~l~~~~~~~~~~~----~~~~~~~~W~~~~el~--~~~~~~a~~~il~~l~~~~~ 360 (363)
.+++|.+.. .+. ..+..+++|++++++. .++++.++.++++.+.....
T Consensus 115 ~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~ 168 (171)
T 1q27_A 115 FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR 168 (171)
T ss_dssp EEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred EEEEEEEEE-CCccccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 678888887 332 2356789999999999 67888899999988876543
No 51
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=123.38 Aligned_cols=117 Identities=8% Similarity=0.055 Sum_probs=89.5
Q ss_pred cceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEE
Q psy9547 235 KDVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKW 311 (363)
Q Consensus 235 ~~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~ 311 (363)
....+++++|.+.+++||+.||... .++|.|+||||+++. ++.+|+ ||+.||+|+++.... .++.+.+.+. +
T Consensus 18 ~~~~~v~~~i~~~~~~vLl~~r~~~-~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~---~ 92 (156)
T 3gg6_A 18 NVCYVVLAVFLSEQDEVLLIQEAKR-ECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPET-LLSVEERGPS---W 92 (156)
T ss_dssp TCEEEEEEECBCTTSEEEEEECCCT-TSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEE-EEEEEESSTT---E
T ss_pred ceEEEEEEEEEeCCCEEEEEEecCC-CCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeee-EEEEEcCCCC---E
Confidence 4456777778887799999999644 489999999999998 888899 999999999987766 6655554333 3
Q ss_pred EEEEEEEEecCCCC-------CCCCCCeeecccccCcCCCChHHHHHHHHHH
Q psy9547 312 NMDVYSGTAKEKTI-------PANKTYKLITETQMKKYAFPVPYQKVWKLFT 356 (363)
Q Consensus 312 ~l~~~~~~~~~~~~-------~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 356 (363)
..++|.+....+.. .+..+++|++++++.+.-.+.....+++...
T Consensus 93 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 144 (156)
T 3gg6_A 93 VRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAA 144 (156)
T ss_dssp EEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHH
T ss_pred EEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHHH
Confidence 44677777654321 3456789999999999888888888777543
No 52
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.55 E-value=2.4e-15 Score=126.29 Aligned_cols=109 Identities=6% Similarity=0.061 Sum_probs=83.5
Q ss_pred eCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccE------EEEccc-eEEEEEE
Q psy9547 246 TDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNV------KHVFSH-LKWNMDV 315 (363)
Q Consensus 246 ~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v------~h~~sh-~~~~l~~ 315 (363)
+++++||+.+|... |.|+||||+++. ++.+|+ ||+.||+|+.+......+..+ .|.|++ .+..+++
T Consensus 17 ~~~~~vLl~~r~~~----g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (149)
T 3son_A 17 EANYQFGVLHRTDA----DVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYC 92 (149)
T ss_dssp SSSEEEEEEEESSS----SCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEE
T ss_pred CCCeEEEEEEEcCC----CCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEE
Confidence 55579999999653 999999999998 888999 999999999886531011111 223333 4677889
Q ss_pred EEEEec--CCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 316 YSGTAK--EKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 316 ~~~~~~--~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
|.+... .+.+ .++.+++|++++++.++.+++.++.+++.+.+.
T Consensus 93 f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 140 (149)
T 3son_A 93 FAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTALYELNER 140 (149)
T ss_dssp EEEECTTTGGGCCCCTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCcccCCCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999987 3322 456778999999999999999999999988764
No 53
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.55 E-value=1.2e-14 Score=122.52 Aligned_cols=118 Identities=4% Similarity=-0.017 Sum_probs=87.7
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceE-EEE
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLK-WNM 313 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~-~~l 313 (363)
.+++++|++++|+||+.||. ...+|.|+||||+++. ++++|+ ||+.||+|+++.... .++...|.+++.. ...
T Consensus 5 ~~~v~~ii~~~~~vLl~~r~--~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~ 81 (153)
T 3shd_A 5 HVTVACVVHAEGKFLVVEET--INGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQH-FIRMHQWIAPDKTPFLR 81 (153)
T ss_dssp EEEEEEEEEETTEEEEEEEE--ETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCE-EEEEEEECCTTSCCEEE
T ss_pred ceEEEEEEEeCCEEEEEEec--CCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCc-EEEEEEEecCCCceEEE
Confidence 34555555555999999995 3458999999999998 888999 999999999988776 7777778776553 445
Q ss_pred EEEEEEecCCC-----CCCCCCCeeecccccCc--CCCChHHHHHHHHHHhh
Q psy9547 314 DVYSGTAKEKT-----IPANKTYKLITETQMKK--YAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 314 ~~~~~~~~~~~-----~~~~~~~~W~~~~el~~--~~~~~a~~~il~~l~~~ 358 (363)
++|.+....+. ..+..+++|++++++.. -...+....+++.+.+.
T Consensus 82 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~ 133 (153)
T 3shd_A 82 FLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSG 133 (153)
T ss_dssp EEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHHHT
T ss_pred EEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHHHHHhC
Confidence 78888876531 23567789999999922 22456666777776654
No 54
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.53 E-value=9.5e-15 Score=129.95 Aligned_cols=113 Identities=6% Similarity=0.004 Sum_probs=87.8
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE---EEcc--ceE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK---HVFS--HLK 310 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~---h~~s--h~~ 310 (363)
.+.++|.++ |+|||.||. .|.|+||||+++. ++.+|+ ||+.||+|+++.... .+..+. |.++ +.+
T Consensus 72 ~v~~vv~~~-~~vLLvrr~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~~ 144 (206)
T 3o8s_A 72 DTRAAIFQE-DKILLVQEN-----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQR-VVAILDKHKNNPAKSAHR 144 (206)
T ss_dssp EEEEEEEET-TEEEEEECT-----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEE-EEEEEEHHHHCC-----C
T ss_pred cEEEEEEEC-CEEEEEEec-----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeee-EEEEEeccccCCCCCCce
Confidence 344455565 899999996 7999999999998 888999 999999999987766 555554 3444 455
Q ss_pred EEEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 311 WNMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
+...+|.|....+.+ .+..+++|++++++.++++++.+.++++.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~ 195 (206)
T 3o8s_A 145 VTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKNTAEQLALCLEA 195 (206)
T ss_dssp EEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred EEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccCCCchHHHHHHHHHH
Confidence 667888888765432 456788999999999999999999998887653
No 55
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.51 E-value=9.8e-14 Score=118.88 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=80.9
Q ss_pred ceeEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEE
Q psy9547 236 DVFLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWN 312 (363)
Q Consensus 236 ~~~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~ 312 (363)
.+.++++++.++ |++|+.+|. +|.|+||||+++. ++++|+ ||+.||+|+++.... .+. .+.+++ ..
T Consensus 15 ~~~~~~~ii~~~-~~vLL~~r~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~--~~~~~~--~~ 83 (163)
T 3f13_A 15 LARRATAIIEMP-DGVLVTASR-----GGRYNLPGGKANRGELRSQALIREIREETGLRINSML-YLF--DHITPF--NA 83 (163)
T ss_dssp CEEEEEEECEET-TEEEEEECC--------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEE-EEE--EEECSS--EE
T ss_pred ceEEEEEEEEeC-CEEEEEEEC-----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeE-EEE--EEecCC--eE
Confidence 344555555555 899999985 5899999999999 888999 999999999987665 443 344444 56
Q ss_pred EEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 313 MDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 313 l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
.++|.+... +.+ .+..+++|++ .+...+++++.++.+++.+.+.
T Consensus 84 ~~~f~~~~~-~~~~~~~E~~~~~W~~-~~~~~~~l~~~~~~il~~~~~~ 130 (163)
T 3f13_A 84 HKVYLCIAQ-GQPKPQNEIERIALVS-SPDTDMDLFVEGRAILRRYARL 130 (163)
T ss_dssp EEEEEEEC--CCCCCCTTCCEEEEES-STTCSSCBCHHHHHHHHHHHHH
T ss_pred EEEEEEEEC-CcCccCCCceEEEEEC-cccccCCCCHHHHHHHHHHHHh
Confidence 778888753 332 2557789999 6667889999999999988764
No 56
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.50 E-value=5.6e-15 Score=131.28 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=77.8
Q ss_pred EEEEEEEeCCceEEEeecCCCc---cccccccc-cccCCCC--C--c----hHHH-HHHHhhCCCcccccccccccEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTG---LLSNFYMF-LSFESDT--P--Y----TSQV-EFLSENLPFKVNLNEKCLGNVKHV 305 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~---~~~glWEF-Pggk~e~--~--~----~~al-rEl~Eelgl~v~~~~~~l~~v~h~ 305 (363)
+.+++|.++ |+||+.||+.++ .+.|.|+| |||++|+ + + ++|+ ||++||+|+++.... .++.+.+.
T Consensus 70 i~~~II~~~-grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~-~ig~~~~~ 147 (211)
T 3e57_A 70 IPYVVIMDG-DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELE-FLGLINSS 147 (211)
T ss_dssp EEEEEEEET-TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEE-EEEEEECC
T ss_pred EEEEEEEEC-CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccE-EEEEEecc
Confidence 455566554 999999997664 37789999 9999999 5 3 7888 999999999988777 77777763
Q ss_pred c-cceEEEE-EEEEEEecCCCC--CCCCCCeeecccccCcC--CCChHHHHHHHHHH
Q psy9547 306 F-SHLKWNM-DVYSGTAKEKTI--PANKTYKLITETQMKKY--AFPVPYQKVWKLFT 356 (363)
Q Consensus 306 ~-sh~~~~l-~~~~~~~~~~~~--~~~~~~~W~~~~el~~~--~~~~a~~~il~~l~ 356 (363)
+ +...+++ .+|.|+..++.+ .+..+++|+++++|.++ .|.+-..-+++.|.
T Consensus 148 ~~~~~~~~l~~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l~ 204 (211)
T 3e57_A 148 TTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKFSGVMEGWSKISAAVLL 204 (211)
T ss_dssp SSHHHHTEEEEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEEEEEeCCceeCCCCeEEEEEEEHHHHHHhHhhccchhHHHHHHHH
Confidence 3 3222222 468888776533 35667899999999987 56555555555553
No 57
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.49 E-value=7.1e-14 Score=115.79 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=79.1
Q ss_pred EEEEEEe--CCce--EEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEc--cceE
Q psy9547 240 LTVVVKT--DTNK--YLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVF--SHLK 310 (363)
Q Consensus 240 ~~~ii~~--~~~~--vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~--sh~~ 310 (363)
+.++|.+ .+|+ +|+.||...+ +.|+||||+++. ++++|+ ||+.||+|+.+.... .+..+.|.. ++.+
T Consensus 12 v~~vi~~~~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~~ 87 (139)
T 2yyh_A 12 TDVIIRLWDGENFKGIVLIERKYPP---VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHK-LMGVYSDPERDPRAH 87 (139)
T ss_dssp EEEEEEEEETTEEEEEEEEEECSSS---CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEE-EEEEECCTTSCTTSC
T ss_pred EEEEEEEEcCCCcEEEEEEEecCCC---CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccce-EEEEECCCCcCCCce
Confidence 3344444 4578 9999996543 339999999999 888889 999999999886554 444333322 1256
Q ss_pred EEEEEEEEEecCCCCC---CCCCCeeecccccC--cCCCChHHHHHHHHHHh
Q psy9547 311 WNMDVYSGTAKEKTIP---ANKTYKLITETQMK--KYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~~---~~~~~~W~~~~el~--~~~~~~a~~~il~~l~~ 357 (363)
+.+.+|.+.. .+.+. +..+++|++++++. .+.++ ..++++.+.+
T Consensus 88 ~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~~~~l~~~--~~~~l~~~l~ 136 (139)
T 2yyh_A 88 VVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIPLDKLVFD--HKKIILDFLK 136 (139)
T ss_dssp EEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCCGGGBCTT--HHHHHHHHHH
T ss_pred EEEEEEEEec-CCccCCCCCcceEEEEEHHHCCHhhcCCC--HHHHHHHHHh
Confidence 7788898887 33332 44578999999999 77766 6778777654
No 58
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.49 E-value=1.2e-14 Score=122.59 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=80.4
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccce----EE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHL----KW 311 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~----~~ 311 (363)
.++++|.++ |+||+.|| .|.|+||||++++ ++++|+ ||+.||+|+++.... .+..+.|.|++. +.
T Consensus 21 ~~~~ii~~~-~~vLl~~r------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (154)
T 2pqv_A 21 RATALIVQN-HKLLVTKD------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQ-LAFVVENRFEVDGVSYHN 92 (154)
T ss_dssp EEEECCEET-TEEEEEEE------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEC-CEEEEEec------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeece-EEEEEeeeecCCCCcceE
Confidence 344555554 89999999 6899999999998 788888 999999999988776 777777777643 23
Q ss_pred EEEEEEEEecCCCC------CCCCCCeeecccccCcCCCChHHHH
Q psy9547 312 NMDVYSGTAKEKTI------PANKTYKLITETQMKKYAFPVPYQK 350 (363)
Q Consensus 312 ~l~~~~~~~~~~~~------~~~~~~~W~~~~el~~~~~~~a~~~ 350 (363)
...+|.+....+.. .+..+++|++++++.++++++++.+
T Consensus 93 ~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 137 (154)
T 2pqv_A 93 IEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLK 137 (154)
T ss_dssp EEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHH
T ss_pred EEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcHHHH
Confidence 45578888765422 1245789999999999999887765
No 59
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.46 E-value=3.5e-14 Score=124.37 Aligned_cols=120 Identities=8% Similarity=-0.029 Sum_probs=91.0
Q ss_pred EEEEEEEeCCceEEEeecCC-Cccccccccc-cccCCCC--CchHHH-HHHHhhCCCccccc-ccccccEEEE--ccc--
Q psy9547 239 LLTVVVKTDTNKYLIQKRPT-TGLLSNFYMF-LSFESDT--PYTSQV-EFLSENLPFKVNLN-EKCLGNVKHV--FSH-- 308 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~-~~~~~glWEF-Pggk~e~--~~~~al-rEl~Eelgl~v~~~-~~~l~~v~h~--~sh-- 308 (363)
.+.++|.+.+|++|+.+|.. .+.++|+|+| |||+++. ++++|+ ||+.||+|+++... . .++.+.|. +++
T Consensus 34 ~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 34 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPES-IYPDFRYRATDPSGI 112 (190)
T ss_dssp CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEE-EETTCEEEEECTTSC
T ss_pred EEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhe-eeeeEEEEeeCCCCC
Confidence 44556666668999999964 4578999999 9999998 888999 99999999998766 5 66666654 332
Q ss_pred -eEEEEEEEEEEecCC-C--CCCCCCCeeecccccCcC------CCChHHHHHHHHHHhhh
Q psy9547 309 -LKWNMDVYSGTAKEK-T--IPANKTYKLITETQMKKY------AFPVPYQKVWKLFTKSK 359 (363)
Q Consensus 309 -~~~~l~~~~~~~~~~-~--~~~~~~~~W~~~~el~~~------~~~~a~~~il~~l~~~~ 359 (363)
.+..+++|.+..... . ..+..+++|++++++.++ .|++..+.+++.+....
T Consensus 113 ~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~ 173 (190)
T 1hzt_A 113 VENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARK 173 (190)
T ss_dssp EEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHH
T ss_pred cceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHH
Confidence 256678888876432 1 234567899999999764 49999999998887653
No 60
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.44 E-value=3.6e-14 Score=120.61 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=77.3
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCccccccccc-ccEEEEccceE----
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCL-GNVKHVFSHLK---- 310 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l-~~v~h~~sh~~---- 310 (363)
.++++|++.+|+||+.||.. .+|+|+||||+++. ++++|+ ||+.||+|+++....... ..+.|.|++..
T Consensus 16 ~v~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (165)
T 1f3y_A 16 NVGICLMNNDKKIFAASRLD---IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKL 92 (165)
T ss_dssp EEEEEEECTTSCEEEEEETT---EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHH
T ss_pred eEEEEEECCCCcEEEEecCC---CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccc
Confidence 34445666668999999963 35999999999998 788888 999999999864221011 11445565431
Q ss_pred ----------EEEEEEEEEecCC--C---------CCCCCCCeeecccccCcCCCC---hHHHHHHHHHH
Q psy9547 311 ----------WNMDVYSGTAKEK--T---------IPANKTYKLITETQMKKYAFP---VPYQKVWKLFT 356 (363)
Q Consensus 311 ----------~~l~~~~~~~~~~--~---------~~~~~~~~W~~~~el~~~~~~---~a~~~il~~l~ 356 (363)
...++|.+....+ . ..+..+++|++++++.++.++ +..+++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1f3y_A 93 NIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFA 162 (165)
T ss_dssp GGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHG
T ss_pred cccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 1345677765432 1 125567899999999997766 55555555544
No 61
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.44 E-value=1.1e-13 Score=122.91 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=85.0
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEc-----cceE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVF-----SHLK 310 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~-----sh~~ 310 (363)
.+.++|.++ |+|||.||.. .|.|+||||++++ ++.+|+ ||+.||+|+.+.... .+....+.+ ...+
T Consensus 70 ~v~~vv~~~-~~vLLv~r~~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~-~l~~~~~~~~~~~~~~~~ 143 (205)
T 3q1p_A 70 DIRAVVFQN-EKLLFVKEKS----DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFK-LLAIFDKEKHQPSPSATH 143 (205)
T ss_dssp EEEEEEEET-TEEEEEEC-------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEE-EEEEEEHHHHSCCCCSSC
T ss_pred eEEEEEEEC-CEEEEEEEcC----CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccce-EEEEEeccccCCCCCCce
Confidence 344455564 8999999963 6899999999998 888999 999999999987665 554443221 1235
Q ss_pred EEEEEEEEEecCCCC---CCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 311 WNMDVYSGTAKEKTI---PANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 311 ~~l~~~~~~~~~~~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
+...+|.|...++.+ .+..+++|++++++.++.+.+.+...++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~ 194 (205)
T 3q1p_A 144 VYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARNTEDQIKEMFAY 194 (205)
T ss_dssp EEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred EEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHH
Confidence 666778888765432 466888999999999999999999888877553
No 62
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.44 E-value=1.2e-13 Score=120.71 Aligned_cols=108 Identities=9% Similarity=-0.073 Sum_probs=80.7
Q ss_pred ceEEEeecCC------CccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc--ceEEEEEEEE
Q psy9547 249 NKYLIQKRPT------TGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS--HLKWNMDVYS 317 (363)
Q Consensus 249 ~~vLl~~R~~------~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s--h~~~~l~~~~ 317 (363)
++||+.+|.. .+...|.|+||||+++. ++++|+ ||+.||+|+.+.... .++.+.+.+. +..+...+|.
T Consensus 46 ~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ 124 (187)
T 3i9x_A 46 LHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLI-PFGVFDKPGRDPRGWIISRAFY 124 (187)
T ss_dssp EEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCE-EEEEECCTTSSTTSSEEEEEEE
T ss_pred CEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEEcCCccCCCCCEEEEEEE
Confidence 6899999952 36789999999999998 888999 999999999887666 6655444332 2223334454
Q ss_pred EEecCC------CCCCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 318 GTAKEK------TIPANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 318 ~~~~~~------~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
+....+ ...+..+++|++++++.++++++.++.+|+...+
T Consensus 125 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~ 170 (187)
T 3i9x_A 125 AIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFS 170 (187)
T ss_dssp EECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHH
T ss_pred EEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHHH
Confidence 443221 1346788999999999999999999999887654
No 63
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.44 E-value=2.2e-13 Score=125.88 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=86.2
Q ss_pred EEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEEE
Q psy9547 240 LTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDVY 316 (363)
Q Consensus 240 ~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~~ 316 (363)
++.+++..+|+|||.||...+ .|+|+||||.+|. +.++|+ ||+.||+|+++.... .+++..+.|+|. .+.+|
T Consensus 142 ~viv~v~~~~~vLL~rr~~~~--~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~-~~~~~~~~~~~~--~~~~f 216 (269)
T 1vk6_A 142 CIIVAIRRDDSILLAQHTRHR--NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR-YVTSQPWPFPQS--LMTAF 216 (269)
T ss_dssp EEEEEEEETTEEEEEEETTTC--SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEE-EEEEEEEETTEE--EEEEE
T ss_pred EEEEEEEeCCEEEEEEecCCC--CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEE-EEEEEecCCCCE--EEEEE
Confidence 333334444899999996554 7999999999999 888999 999999999998777 888888999875 46778
Q ss_pred EEEecCCCC----CCCCCCeeecccccCcCCCChHHH-HHHHHHH
Q psy9547 317 SGTAKEKTI----PANKTYKLITETQMKKYAFPVPYQ-KVWKLFT 356 (363)
Q Consensus 317 ~~~~~~~~~----~~~~~~~W~~~~el~~~~~~~a~~-~il~~l~ 356 (363)
.++..++.. .+..+++|++++|+..++.+.+.. .+++...
T Consensus 217 ~a~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l 261 (269)
T 1vk6_A 217 MAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTV 261 (269)
T ss_dssp EEEEEECCCCCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHH
T ss_pred EEEECCCCcCCCCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHH
Confidence 887765432 345678999999999988876543 4454443
No 64
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.43 E-value=1.7e-13 Score=131.28 Aligned_cols=120 Identities=9% Similarity=0.011 Sum_probs=87.6
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccc----cEEEEccc---
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLG----NVKHVFSH--- 308 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~----~v~h~~sh--- 308 (363)
.+.++|.+ +|+||+.||... ..+|+|+||||++|+ ++++|+ ||+.||+|+++.... .++ ...+.+++
T Consensus 210 ~v~~vv~~-~~~vLL~~r~~~-~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~-~~~~~~~~~~~~~~~~~~ 286 (352)
T 2qjt_B 210 TVDALVIV-NDHILMVQRKAH-PGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQ-LAIAKRCEKVFDYPDRSV 286 (352)
T ss_dssp EEEEEEEE-TTEEEEEEESSS-SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHH-HHHHEEEEEEECCTTSCT
T ss_pred EEEEEEEE-CCEEEEEEEcCC-CCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccch-hcceeeeeEEecCCCCCC
Confidence 34445554 489999999654 358999999999999 888999 999999999886543 222 22233332
Q ss_pred -eEEEEEEEEEEecCCC--C-----CCCCCCeeecc-cccCcC--CCChHHHHHHHHHHhhhcc
Q psy9547 309 -LKWNMDVYSGTAKEKT--I-----PANKTYKLITE-TQMKKY--AFPVPYQKVWKLFTKSKGL 361 (363)
Q Consensus 309 -~~~~l~~~~~~~~~~~--~-----~~~~~~~W~~~-~el~~~--~~~~a~~~il~~l~~~~~~ 361 (363)
.++.+++|.+....+. + .+..+++|+++ +++.++ ++++.++++++.+.+..++
T Consensus 287 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l~~ 350 (352)
T 2qjt_B 287 RGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEECGK 350 (352)
T ss_dssp TSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHTC-
T ss_pred CccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHhcc
Confidence 3456677877765443 1 24567899999 999997 8999999999998876653
No 65
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.43 E-value=1.6e-13 Score=130.86 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=83.9
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccE--EEEcc--c---
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNV--KHVFS--H--- 308 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v--~h~~s--h--- 308 (363)
.+.++|.+ +|+||+.||.. +..+|+|+||||++|+ ++++|+ ||+.||+|+++.... .++.+ .+.|+ +
T Consensus 205 ~v~~vi~~-~~~vLL~~r~~-~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~ 281 (341)
T 2qjo_A 205 TTDAVVVQ-AGHVLMVRRQA-KPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPV-LRGSIVDSHVFDAPGRSL 281 (341)
T ss_dssp EEEEEEEE-TTEEEEEECCS-SSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHH-HHHTEEEEEEECCTTSCT
T ss_pred EEEEEEEe-CCEEEEEEecC-CCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCcccccc-ccccccceEEEeCCCCCC
Confidence 33444554 48999999965 4568999999999998 888889 999999999987654 44322 23333 2
Q ss_pred -eEEEEEEEEEEecCCCC------CCCCCCeeecccccCcC--CCChHHHHHHHHHHh
Q psy9547 309 -LKWNMDVYSGTAKEKTI------PANKTYKLITETQMKKY--AFPVPYQKVWKLFTK 357 (363)
Q Consensus 309 -~~~~l~~~~~~~~~~~~------~~~~~~~W~~~~el~~~--~~~~a~~~il~~l~~ 357 (363)
.+..+++|.+....+.. .+..+++|++++++.++ ++++.++++++.+.+
T Consensus 282 ~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~ 339 (341)
T 2qjo_A 282 RGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVS 339 (341)
T ss_dssp TSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC-
T ss_pred CCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHh
Confidence 24556778887654431 34578899999999998 899999999988754
No 66
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.41 E-value=5.7e-14 Score=122.04 Aligned_cols=104 Identities=9% Similarity=-0.105 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEE
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMD 314 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~ 314 (363)
..+++++++.+|++|+.+|...+..+|+|+||||++++ ++++|+ ||+.||+|+.+.... .++.+.|..++.+..++
T Consensus 42 ~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~ 120 (182)
T 2yvp_A 42 AASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLI-PLPSFHPQPSFTAVVFH 120 (182)
T ss_dssp EEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEE-ECCCBCSCTTTBCCEEE
T ss_pred CEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEE-EEEEEeCCCCccccEEE
Confidence 35556666677899999997777789999999999998 888899 999999999987766 77777777777777788
Q ss_pred EEEEEecC--CC----CCCCCCCeeecccccCcC
Q psy9547 315 VYSGTAKE--KT----IPANKTYKLITETQMKKY 342 (363)
Q Consensus 315 ~~~~~~~~--~~----~~~~~~~~W~~~~el~~~ 342 (363)
+|.+.... +. ..+..++.|++++++.++
T Consensus 121 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 154 (182)
T 2yvp_A 121 PFLALKARVVTPPTLEEGELLESLELPLTEVYAL 154 (182)
T ss_dssp EEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHH
T ss_pred EEEEeccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 89887432 22 235567899999998753
No 67
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.41 E-value=1.2e-13 Score=118.73 Aligned_cols=101 Identities=6% Similarity=-0.098 Sum_probs=77.2
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDV 315 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~ 315 (363)
.+++++.+ +|++|+.+|...+..+|+|+||||++++ ++++|+ ||+.||+|+ +.... .++.+.|..++.+..+++
T Consensus 36 ~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~-~l~~~~~~~~~~~~~~~~ 112 (170)
T 1v8y_A 36 AVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLT-YLFSYFVSPGFTDEKTHV 112 (170)
T ss_dssp EEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEE-EEEEEESCTTTBCCEEEE
T ss_pred eEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCce-eeEEEecCCCccccEEEE
Confidence 45556666 6999999886666789999999999998 888889 999999999 76666 677776666666677888
Q ss_pred EEEEecCC-C----CCCCCCCeeecccccCcC
Q psy9547 316 YSGTAKEK-T----IPANKTYKLITETQMKKY 342 (363)
Q Consensus 316 ~~~~~~~~-~----~~~~~~~~W~~~~el~~~ 342 (363)
|.+....+ . ..+..++.|++++++.++
T Consensus 113 f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 144 (170)
T 1v8y_A 113 FLAENLKEVEAHPDEDEAIEVVWMRPEEALER 144 (170)
T ss_dssp EEEEEEEECC--------CEEEEECHHHHHHH
T ss_pred EEEEeccccCCCCCCCceEEEEEEEHHHHHHH
Confidence 88876532 1 235678899999998753
No 68
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.41 E-value=3.7e-13 Score=113.86 Aligned_cols=106 Identities=8% Similarity=0.010 Sum_probs=76.3
Q ss_pred CCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEE----EccceEEEEEEEEEE
Q psy9547 247 DTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKH----VFSHLKWNMDVYSGT 319 (363)
Q Consensus 247 ~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h----~~sh~~~~l~~~~~~ 319 (363)
++++|||.||..+ .|.|+||||++++ ++.+|+ ||+.||+|+.+.... .+..+.+ ..........+|.+.
T Consensus 22 ~~~e~LL~~r~~~---~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (155)
T 3u53_A 22 NAIEFLLLQASDG---IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLT-IIEGFKRELNYVARNKPKTVIYWLAE 97 (155)
T ss_dssp CSEEEEEEEESSS---SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEE-EEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCcEEEEEEecCC---CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccce-eeeeEeeeeecCCCcceeEEEEEEEE
Confidence 4468999999654 3789999999999 889999 999999999887654 4433322 233444555666666
Q ss_pred ecCC--CC---CCCCCCeeecccccCcCCCChHHHHHHHHHH
Q psy9547 320 AKEK--TI---PANKTYKLITETQMKKYAFPVPYQKVWKLFT 356 (363)
Q Consensus 320 ~~~~--~~---~~~~~~~W~~~~el~~~~~~~a~~~il~~l~ 356 (363)
..++ .+ .++.+++|++++|+.++...+.++.+|+...
T Consensus 98 ~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~ 139 (155)
T 3u53_A 98 VKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGH 139 (155)
T ss_dssp ESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHH
T ss_pred EeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 22 2557789999999988766777888876543
No 69
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.38 E-value=1.5e-13 Score=115.04 Aligned_cols=104 Identities=6% Similarity=-0.134 Sum_probs=70.9
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEE
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMD 314 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~ 314 (363)
..+++++.+.+|++|+.++...+..+|+|+||||++|+ ++++|+ ||++||+|+++.... .++.+.+..++....++
T Consensus 6 ~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~ 84 (145)
T 2w4e_A 6 RAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWV-PLPGFYPQPSISGVVFY 84 (145)
T ss_dssp EEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEE-ECCCBBSCTTTCCCEEE
T ss_pred CEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEE-EEecCcCCCCccCceEE
Confidence 34555666766899776542333457899999999998 888999 999999999887655 56655444344444567
Q ss_pred EEEEEec-CCC----CCCCCCCeeecccccCcC
Q psy9547 315 VYSGTAK-EKT----IPANKTYKLITETQMKKY 342 (363)
Q Consensus 315 ~~~~~~~-~~~----~~~~~~~~W~~~~el~~~ 342 (363)
+|.+... .+. ..+..+++|++++++.++
T Consensus 85 ~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 117 (145)
T 2w4e_A 85 PLLALGVTLGAAQLEDTETIERVVLPLAEVYRM 117 (145)
T ss_dssp EEEEEEEEEC--------CEEEEEEEHHHHHHH
T ss_pred EEEEEecccCCCCCCCCCeEEEEEEeHHHHHHH
Confidence 7777632 221 235567899999998753
No 70
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.36 E-value=7.2e-13 Score=116.76 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=75.5
Q ss_pred EEEEEEEeCCc-eEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCc-ccccccccccEE-EEcc-----
Q psy9547 239 LLTVVVKTDTN-KYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFK-VNLNEKCLGNVK-HVFS----- 307 (363)
Q Consensus 239 v~~~ii~~~~~-~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~-v~~~~~~l~~v~-h~~s----- 307 (363)
++.++|++.++ +||+.+|+. .|.|+||||++|. ++.+|+ ||+.||+|++ +.........+. |..+
T Consensus 47 ~~~~vv~~~~~~~vLL~~r~~----~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 122 (197)
T 3fcm_A 47 TSSAFAVNKERNKFLMIHHNI----YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKR 122 (197)
T ss_dssp EEEEEEECTTSCEEEEEEETT----TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEET
T ss_pred EEEEEEEECCCCEEEEEEecC----CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCcccc
Confidence 44555566544 999999863 5799999999998 888999 9999999997 543210121221 2221
Q ss_pred ------ceEEEEEEEEEEecCCC-----CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 308 ------HLKWNMDVYSGTAKEKT-----IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 308 ------h~~~~l~~~~~~~~~~~-----~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
|.++. .+|.+....+. ..+..+++|++++++.++...+.+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~ 183 (197)
T 3fcm_A 123 GKYVSSHLHLN-LTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINK 183 (197)
T ss_dssp TEEECCEEEEE-EEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHH
T ss_pred CcccCCceeEE-EEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHH
Confidence 22322 44555554432 2356788999999999998888888887776543
No 71
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.34 E-value=1.6e-12 Score=117.24 Aligned_cols=105 Identities=9% Similarity=-0.014 Sum_probs=76.0
Q ss_pred eCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEcc--ceEEEEEEEEEEe
Q psy9547 246 TDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFS--HLKWNMDVYSGTA 320 (363)
Q Consensus 246 ~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~s--h~~~~l~~~~~~~ 320 (363)
+++++||+.+|.. ....|.|+||||++++ ++++|+ ||+.||+|+.+...+ .++++.+.+. ..++...+|.+..
T Consensus 25 ~~~~~vLLv~r~~-~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~-~l~~~~~~~r~~~~~~v~~~y~a~~ 102 (226)
T 2fb1_A 25 EGEISLLLLKRNF-EPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYME-QVGAFGAIDRDPGERVVSIAYYALI 102 (226)
T ss_dssp TTEEEEEEEECSS-SSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEE-EEEEECCTTSSSSSCEEEEEEEEEC
T ss_pred CCCCEEEEEECcC-CCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceE-EEEEeCCCCcCCCceEEEEEEEEEe
Confidence 3457999999954 5678999999999999 888899 999999999887655 5655544332 2333344677776
Q ss_pred cCCCC----CCCCCCeeecccccCcCCCChHHHHHHHH
Q psy9547 321 KEKTI----PANKTYKLITETQMKKYAFPVPYQKVWKL 354 (363)
Q Consensus 321 ~~~~~----~~~~~~~W~~~~el~~~~~~~a~~~il~~ 354 (363)
..+.. .+..+++|++++++.++.+. +..|++.
T Consensus 103 ~~~~~~~~~~e~~~~~W~~~~el~~l~~d--h~~il~~ 138 (226)
T 2fb1_A 103 NINEYDRELVQKHNAYWVNINELPALIFD--HPEMVDK 138 (226)
T ss_dssp CTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHHH
T ss_pred cCcccccCCccccceEEEEHHHhhhccCC--HHHHHHH
Confidence 54322 24578899999999987776 4455544
No 72
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=1e-12 Score=109.53 Aligned_cols=104 Identities=7% Similarity=0.018 Sum_probs=69.7
Q ss_pred eeEEEEEEEeCC-ceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE-EEccceEE
Q psy9547 237 VFLLTVVVKTDT-NKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK-HVFSHLKW 311 (363)
Q Consensus 237 ~~v~~~ii~~~~-~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~-h~~sh~~~ 311 (363)
+.+++++|.+.+ ++||+.||.. .|+|+||||.++. ++.+|+ ||+.||+|+.+.... .+..+. +.+++..+
T Consensus 4 i~~~~~~i~~~~~~~vLl~~r~~----~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~~ 78 (146)
T 2jvb_A 4 IPVRGAAIFNENLSKILLVQGTE----SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYI-DDNQFIERNIQGKNY 78 (146)
T ss_dssp SCCEEEEEBCTTSSEEEEECCSS----SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSS-CSSCEEEEEETTEEE
T ss_pred eEEEEEEEEeCCCCEEEEEEEcC----CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhc-ccccccccccCCceE
Confidence 445666666654 8999999864 4899999999998 788888 999999999876433 333332 22333333
Q ss_pred EEEEEEEEecC----CC---CCCCCCCeeecccccCcCCCChH
Q psy9547 312 NMDVYSGTAKE----KT---IPANKTYKLITETQMKKYAFPVP 347 (363)
Q Consensus 312 ~l~~~~~~~~~----~~---~~~~~~~~W~~~~el~~~~~~~a 347 (363)
++|.+.... .. ..+..++.|++++++.++..+..
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 119 (146)
T 2jvb_A 79 --KIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN 119 (146)
T ss_dssp --EEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred --EEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence 344433211 11 23557889999999988665543
No 73
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.31 E-value=2.1e-12 Score=117.58 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=83.4
Q ss_pred CCceEEEeecCCCccccccccccccCCCC----CchHHH-HHHHhhCCCcccccccccccEEEEc--cceEEEEEEEEEE
Q psy9547 247 DTNKYLIQKRPTTGLLSNFYMFLSFESDT----PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVF--SHLKWNMDVYSGT 319 (363)
Q Consensus 247 ~~~~vLl~~R~~~~~~~glWEFPggk~e~----~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~--sh~~~~l~~~~~~ 319 (363)
++++||+.+|. ...+.|.|+||||++++ +.++|+ ||+.||+|+.+...+ .+.++.+.+ +..++...+|.+.
T Consensus 35 ~~~~vLLv~R~-~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~-~l~~~~~~~r~~~~~~~~~~y~a~ 112 (240)
T 3gz5_A 35 QQLKVLLVQRS-NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIE-QLCTVGNNSRDARGWSVTVCYTAL 112 (240)
T ss_dssp TEEEEEEEECC-SSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEE-EEEEEEESSSSTTSCEEEEEEEEE
T ss_pred CCcEEEEEECc-CCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCcee-eEEEeCCCccCCCceEEEEEEEEE
Confidence 34699999996 56679999999999986 678888 999999999987666 666666643 3334555667666
Q ss_pred ecCC----CCCCCCCCeeecccccCcCCCChHHHHHHHHHHh
Q psy9547 320 AKEK----TIPANKTYKLITETQMKKYAFPVPYQKVWKLFTK 357 (363)
Q Consensus 320 ~~~~----~~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~ 357 (363)
+..+ ...+..++.|++++++.+.+++..+..|++...+
T Consensus 113 ~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~ 154 (240)
T 3gz5_A 113 MSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARE 154 (240)
T ss_dssp CCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHH
T ss_pred ecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHHHHH
Confidence 5443 1246778999999999988899999998876543
No 74
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.29 E-value=1.8e-12 Score=114.49 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=76.2
Q ss_pred EEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEEEE
Q psy9547 240 LTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMDVY 316 (363)
Q Consensus 240 ~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~~~ 316 (363)
+++++.++ ++|||.+|...+..+|+|+||||++++ ++++|+ ||+.||+|+.+.... .++.+.+........+++|
T Consensus 52 v~vl~~~~-~~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~~f 129 (198)
T 1vhz_A 52 VMIVPIVD-DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLT-FLKKLSMAPSYFSSKMNIV 129 (198)
T ss_dssp EEEEEEET-TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEE-EEEEEECCTTTCCCEEEEE
T ss_pred EEEEEEEC-CEEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceE-EEEEEeCCCCccCcEEEEE
Confidence 33344566 499999876566778999999999998 888899 999999999987666 6776666555555667788
Q ss_pred EEEecCC-C----CCCCCCCeeecccccCcCC
Q psy9547 317 SGTAKEK-T----IPANKTYKLITETQMKKYA 343 (363)
Q Consensus 317 ~~~~~~~-~----~~~~~~~~W~~~~el~~~~ 343 (363)
.+....+ . ..+..+..|++++++.++-
T Consensus 130 ~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 161 (198)
T 1vhz_A 130 VAQDLYPESLEGDEPEPLPQVRWPLAHMMDLL 161 (198)
T ss_dssp EEEEEEECCCCCCCSSCCCEEEEEGGGGGGGG
T ss_pred EEEeCCcccCCCCCCceEEEEEEEHHHHHHHH
Confidence 8875432 1 1245677999999998753
No 75
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.29 E-value=6.6e-13 Score=118.04 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCC-C--CchHHH-HHHHhhCCCcccccccccccEEEEccceEE-EE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESD-T--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKW-NM 313 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e-~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~-~l 313 (363)
.+++++.+.+|+|||.+|...+..+|+|+||||+++ . ++++|+ ||+.||+|+.+.... .++.+ |.++++.. .+
T Consensus 45 av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~-~~~~~~~~~~~ 122 (207)
T 1mk1_A 45 AVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQ-VLVDL-DTAPGFSDESV 122 (207)
T ss_dssp EEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEE-EEEEE-CSCTTTBCCCE
T ss_pred EEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccE-EEEEE-EcCCCccccEE
Confidence 455555666789999998766778999999999999 6 788888 999999999987665 56555 66666543 57
Q ss_pred EEEEEEecCCC-------CCCCCCCeeecccccCcCCC
Q psy9547 314 DVYSGTAKEKT-------IPANKTYKLITETQMKKYAF 344 (363)
Q Consensus 314 ~~~~~~~~~~~-------~~~~~~~~W~~~~el~~~~~ 344 (363)
++|.+....+. ..+..++.|++++++.++.+
T Consensus 123 ~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 160 (207)
T 1mk1_A 123 RVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL 160 (207)
T ss_dssp EEEEEEEEEECCC----------CEEEEEHHHHHHHHH
T ss_pred EEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence 77888754321 12456789999999976543
No 76
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=111.35 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=72.0
Q ss_pred eEEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccc-cEEEEccceE-EE
Q psy9547 238 FLLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLG-NVKHVFSHLK-WN 312 (363)
Q Consensus 238 ~v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~-~v~h~~sh~~-~~ 312 (363)
.++++++.+++++||+.||.. .++|.|+||||++++ ++++|+ ||+.||+|+.+.... .++ ...|.+++.. ..
T Consensus 28 ~v~~~v~~~~~~~vLL~~r~~--~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~-l~~~~~~~~~~~~~~~~ 104 (199)
T 3h95_A 28 GVAGAVFDESTRKILVVQDRN--KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS-VLSIRQQHTNPGAFGKS 104 (199)
T ss_dssp EEEEEEEETTTTEEEEEEESS--SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EEEEEECC---------
T ss_pred eEEEEEEeCCCCEEEEEEEcC--CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccce-EEEEEeeecCCCCceeE
Confidence 344444444458999999954 358999999999999 888888 999999999987554 433 2224444322 22
Q ss_pred EEEEEEEecCC--C----CCCCCCCeeecccccCcCCCChH-HHHHHHHHH
Q psy9547 313 MDVYSGTAKEK--T----IPANKTYKLITETQMKKYAFPVP-YQKVWKLFT 356 (363)
Q Consensus 313 l~~~~~~~~~~--~----~~~~~~~~W~~~~el~~~~~~~a-~~~il~~l~ 356 (363)
..+|.+....+ . ..+..++.|++++++.++....+ ...++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~ 155 (199)
T 3h95_A 105 DMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLL 155 (199)
T ss_dssp CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHH
Confidence 23344444321 1 13456789999999988655443 444444443
No 77
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.25 E-value=3.6e-12 Score=113.76 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=79.5
Q ss_pred EEeCCceEEEeecCCCccccccccccccCCCC---CchHHH-HHHHhhCCCcccccc----cccccEEEEccceEEEEEE
Q psy9547 244 VKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT---PYTSQV-EFLSENLPFKVNLNE----KCLGNVKHVFSHLKWNMDV 315 (363)
Q Consensus 244 i~~~~~~vLl~~R~~~~~~~glWEFPggk~e~---~~~~al-rEl~Eelgl~v~~~~----~~l~~v~h~~sh~~~~l~~ 315 (363)
+.++++++|+.|| ++|+|+||||++++ ++++|+ ||+.||+|+.+.... ..+.++.|.|+ .++.+++
T Consensus 51 i~~~~~~vLl~~r-----~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 124 (212)
T 1u20_A 51 RVPIRRVLLMMMR-----FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHF 124 (212)
T ss_dssp TEECCEEEEEEEE-----TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEE
T ss_pred EEecCCEEEEEEe-----CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEE
Confidence 3455589999998 47999999999987 567788 999999999886432 14667788888 6778899
Q ss_pred EEEEecCCCC--------------CCCCCCeeecccccCcC--C---------CChHHHHHHHHHHhh
Q psy9547 316 YSGTAKEKTI--------------PANKTYKLITETQMKKY--A---------FPVPYQKVWKLFTKS 358 (363)
Q Consensus 316 ~~~~~~~~~~--------------~~~~~~~W~~~~el~~~--~---------~~~a~~~il~~l~~~ 358 (363)
|.+....+.+ .+..+..|++++++.+. . +..+...+++.|.+.
T Consensus 125 f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~~~p~f~~~~~i~~a~~~l~~~l~~~ 192 (212)
T 1u20_A 125 YIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSL 192 (212)
T ss_dssp EEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHHHHHHHHT
T ss_pred EEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhhhcCCchhhhhhhhHHHHHHHHHHHHhC
Confidence 9998754311 12234789999999763 1 235666677777654
No 78
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.21 E-value=5e-11 Score=101.86 Aligned_cols=98 Identities=8% Similarity=0.050 Sum_probs=69.4
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE----EEccc---
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK----HVFSH--- 308 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~----h~~sh--- 308 (363)
.+.++|.+.+|+||+.+|.. .|.|+||||.++. ++++|+ ||+.||+|+.+.... .++.+. +.+++
T Consensus 10 ~v~~~i~~~~~~vLl~~r~~----~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (164)
T 2kdv_A 10 NVGIVICNRQGQVMWARRFG----QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVR-ILASTRNWLRYKLPKRLV 84 (164)
T ss_dssp EEEEEEECTTSEEEEEEETT----CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEE-EEEECSSCEEEECCTTTC
T ss_pred EEEEEEEccCCEEEEEEEcC----CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceE-EEEEecceeEEecCccee
Confidence 34455666668999999964 6899999999998 888888 999999999887655 454432 33332
Q ss_pred --------eEEEEEEEEEEecCC--CC-------CCCCCCeeecccccCc
Q psy9547 309 --------LKWNMDVYSGTAKEK--TI-------PANKTYKLITETQMKK 341 (363)
Q Consensus 309 --------~~~~l~~~~~~~~~~--~~-------~~~~~~~W~~~~el~~ 341 (363)
.....++|.+....+ .. .+..+++|++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~ 134 (164)
T 2kdv_A 85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR 134 (164)
T ss_dssp CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence 123567788876543 11 1445789999988754
No 79
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.20 E-value=8.8e-12 Score=120.21 Aligned_cols=107 Identities=11% Similarity=0.066 Sum_probs=81.2
Q ss_pred CCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccc-------------eE
Q psy9547 247 DTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSH-------------LK 310 (363)
Q Consensus 247 ~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh-------------~~ 310 (363)
++.+||+.+|+.. |.|+||||++|+ ++++|+ ||+.||+|+++.... .+..+.|.|++ ..
T Consensus 36 ~~~~vLLv~r~~~----g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~-~l~~~~~~~~~~g~~~~~~~~~~~~~ 110 (364)
T 3fjy_A 36 DSIEVCIVHRPKY----DDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGP-YLCEVEYPLSEEGKKTRHSHDCTADT 110 (364)
T ss_dssp TTEEEEEEEETTT----TEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEE-EEEEEC--------------------
T ss_pred CceEEEEEEcCCC----CCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeecc-ccceEEEeccCCCcccccccccccCc
Confidence 3458999999543 899999999998 888999 999999999998777 77777777763 24
Q ss_pred EEEEEEEEEecCCC----------------CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 311 WNMDVYSGTAKEKT----------------IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 311 ~~l~~~~~~~~~~~----------------~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
..+++|.+....+. ..+..+++|++++++.++...+.++.+++.+.+.
T Consensus 111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~ 174 (364)
T 3fjy_A 111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDR 174 (364)
T ss_dssp -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHH
Confidence 56777888765431 1356788999999999999999999999887654
No 80
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.17 E-value=5.8e-11 Score=109.87 Aligned_cols=104 Identities=8% Similarity=-0.025 Sum_probs=70.0
Q ss_pred ceeEEEEEEEeC-CceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE-EEccceE
Q psy9547 236 DVFLLTVVVKTD-TNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK-HVFSHLK 310 (363)
Q Consensus 236 ~~~v~~~ii~~~-~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~-h~~sh~~ 310 (363)
.+.+++++|.+. +|+||+.+|... +|.|+||||++|+ ++++|+ ||+.||+|+++.... .+.... ..+++.
T Consensus 100 ~v~~v~avv~~~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~-~~~~~~~~~~~~~- 174 (271)
T 2a6t_A 100 RIPVRGAIMLDMSMQQCVLVKGWKA---SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRI-NPNEFIDMTIRGQ- 174 (271)
T ss_dssp CCCEEEEEEBCSSSSEEEEEEESST---TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTC-CTTCEEEEEETTE-
T ss_pred CCCeEEEEEEECCCCEEEEEEEeCC---CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeee-eeeeeccCCcCCc-
Confidence 345666777664 489999999543 5899999999999 888999 999999999886543 332221 223443
Q ss_pred EEEEEEEEEecC--C--CC---CCCCCCeeecccccCcCCCC
Q psy9547 311 WNMDVYSGTAKE--K--TI---PANKTYKLITETQMKKYAFP 345 (363)
Q Consensus 311 ~~l~~~~~~~~~--~--~~---~~~~~~~W~~~~el~~~~~~ 345 (363)
.+++|.+.... + .+ .+..+++|++++++.++...
T Consensus 175 -~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 215 (271)
T 2a6t_A 175 -NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN 215 (271)
T ss_dssp -EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred -eEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhc
Confidence 34666665432 1 11 24567899999999886554
No 81
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.14 E-value=8e-11 Score=106.67 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=81.6
Q ss_pred EEEEEEeCCceEEEeecCCCc-cccccccccc-cCCCCC-----------chHHH-HHHHhhCCCcccc-----cccccc
Q psy9547 240 LTVVVKTDTNKYLIQKRPTTG-LLSNFYMFLS-FESDTP-----------YTSQV-EFLSENLPFKVNL-----NEKCLG 300 (363)
Q Consensus 240 ~~~ii~~~~~~vLl~~R~~~~-~~~glWEFPg-gk~e~~-----------~~~al-rEl~Eelgl~v~~-----~~~~l~ 300 (363)
+.++|.+.+|++||+||...+ .++|+|+||+ |.++.. ..+|+ ||+.||+|+.+.. .. .++
T Consensus 62 v~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~-~l~ 140 (235)
T 2dho_A 62 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEIN-YLT 140 (235)
T ss_dssp EEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSE-EEE
T ss_pred EEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcE-EEE
Confidence 334556667899999997654 6899999994 887742 26778 9999999998652 23 566
Q ss_pred cEEEEccc-----eEEEEEEEEEEecCC---CCCCCCCCeeecccccCcC---------CCChHHHHHHHHHHh
Q psy9547 301 NVKHVFSH-----LKWNMDVYSGTAKEK---TIPANKTYKLITETQMKKY---------AFPVPYQKVWKLFTK 357 (363)
Q Consensus 301 ~v~h~~sh-----~~~~l~~~~~~~~~~---~~~~~~~~~W~~~~el~~~---------~~~~a~~~il~~l~~ 357 (363)
.+.+.++. .+-..++|.+..... ...+..+++|++++++.+. .|++..+.+++.+..
T Consensus 141 ~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L~ 214 (235)
T 2dho_A 141 RIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLF 214 (235)
T ss_dssp EEEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTHH
T ss_pred EEEEeccCCCccceeEEEEEEEEEECCCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHHH
Confidence 66655532 122356777775321 1235577899999999652 799988888877653
No 82
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.13 E-value=4.4e-11 Score=105.19 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=67.5
Q ss_pred EEEEEE--eCCceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccceEEEEE
Q psy9547 240 LTVVVK--TDTNKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHLKWNMD 314 (363)
Q Consensus 240 ~~~ii~--~~~~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~~~~l~ 314 (363)
++++|. +++++||+.||... +|.|+||||++|. ++++|+ ||+.||+|+++.... .++.+.+. .+. ..++
T Consensus 43 ~~~vi~~~~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~-~l~~~~~~-~~~-~~~~ 116 (194)
T 2fvv_A 43 AACLCFRSESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGR-LVGIFENQ-ERK-HRTY 116 (194)
T ss_dssp EEEEEESSTTCCEEEEEECSSC---TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEE-EEEEEEET-TTT-EEEE
T ss_pred EEEEEEEECCCCEEEEEEEeCC---CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccce-EEEEEEcC-CCc-eEEE
Confidence 344444 33589999998643 4899999999998 888999 999999999987766 66665543 322 2456
Q ss_pred EEEEEecCC--CC----CCCCCCeeecccccCc
Q psy9547 315 VYSGTAKEK--TI----PANKTYKLITETQMKK 341 (363)
Q Consensus 315 ~~~~~~~~~--~~----~~~~~~~W~~~~el~~ 341 (363)
+|.+..... .. .++.+.+|++++++.+
T Consensus 117 ~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~ 149 (194)
T 2fvv_A 117 VYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIK 149 (194)
T ss_dssp EEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHH
T ss_pred EEEEEEccccCCCCCcccccceEEEEEHHHHHH
Confidence 676654321 11 1246789999999876
No 83
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=105.98 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=51.6
Q ss_pred eEEEeecCCCccccccccccccCCCC---CchHHH-HHHHhhCCC-cccccccccccEEEEccceEEEEEEEEEEecCC
Q psy9547 250 KYLIQKRPTTGLLSNFYMFLSFESDT---PYTSQV-EFLSENLPF-KVNLNEKCLGNVKHVFSHLKWNMDVYSGTAKEK 323 (363)
Q Consensus 250 ~vLl~~R~~~~~~~glWEFPggk~e~---~~~~al-rEl~Eelgl-~v~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~~ 323 (363)
.+|+..| ++|+|||||||+|+ |+++++ ||+.||+|+ .|.... ++.++.|.|+ .++.+++|.|+...|
T Consensus 45 ~iLmQ~R-----~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~-y~~s~~~~yp-~~V~LHfY~crl~~G 116 (214)
T 3kvh_A 45 SVLMQMR-----FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEAD-YLSSHLTEGP-HRVVAHLYARQLTLE 116 (214)
T ss_dssp EEEEEEE-----TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGG-EEEEEEC-----CEEEEEEEEECCHH
T ss_pred eEEEeee-----eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeee-eEEEEeccCC-CEEEEEEEEEEeeCC
Confidence 5777777 45999999999998 678889 999999996 576666 7888888888 689999999998764
No 84
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.09 E-value=1.5e-10 Score=105.51 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=80.8
Q ss_pred EEEEEEeCCceEEEeecCCCc-cccccccccc-cCCCC--------Cc---hHHH-HHHHhhCCCcccc-----cccccc
Q psy9547 240 LTVVVKTDTNKYLIQKRPTTG-LLSNFYMFLS-FESDT--------PY---TSQV-EFLSENLPFKVNL-----NEKCLG 300 (363)
Q Consensus 240 ~~~ii~~~~~~vLl~~R~~~~-~~~glWEFPg-gk~e~--------~~---~~al-rEl~Eelgl~v~~-----~~~~l~ 300 (363)
+.++|.+.+|++||+||...+ .++|+|+||+ |.++. ++ ++|+ ||+.||+|+.+.. .. .++
T Consensus 73 v~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~-~l~ 151 (246)
T 2pny_A 73 FSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIV-FMT 151 (246)
T ss_dssp EEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSE-EEE
T ss_pred EEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccE-EEE
Confidence 334556667899999997654 6899999995 87763 23 6778 9999999998652 23 455
Q ss_pred cEEEEccc-----eEEEEEEEEEEecCC-C--CCCCCCCeeecccccCcC---------CCChHHHHHHHHHHh
Q psy9547 301 NVKHVFSH-----LKWNMDVYSGTAKEK-T--IPANKTYKLITETQMKKY---------AFPVPYQKVWKLFTK 357 (363)
Q Consensus 301 ~v~h~~sh-----~~~~l~~~~~~~~~~-~--~~~~~~~~W~~~~el~~~---------~~~~a~~~il~~l~~ 357 (363)
.+.+.++. .+-..++|.+..... . ..|..+++|++++++.++ .|++..+.+++.+..
T Consensus 152 ~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~ 225 (246)
T 2pny_A 152 IYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLY 225 (246)
T ss_dssp EEEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHH
T ss_pred EEEEEecCCCceeeeEEEEEEEEEECCCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHH
Confidence 66555432 122356777765321 1 235577899999999653 788888888877653
No 85
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.08 E-value=8e-11 Score=104.72 Aligned_cols=102 Identities=5% Similarity=-0.065 Sum_probs=67.5
Q ss_pred EEEEEEEe-CCceEEEee--cCCCc---cccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEEEEccce
Q psy9547 239 LLTVVVKT-DTNKYLIQK--RPTTG---LLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHL 309 (363)
Q Consensus 239 v~~~ii~~-~~~~vLl~~--R~~~~---~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~ 309 (363)
.+++++.+ ++|+|||.+ |++.+ ..+++||||||++++ ++++|+ ||+.||+|+.+.... .++++.+.-...
T Consensus 59 av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~g~~ 137 (209)
T 1g0s_A 59 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTK-PVLSFLASPGGT 137 (209)
T ss_dssp EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEE-EEEEEESCTTTB
T ss_pred EEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEE-EeEEEecCCCcc
Confidence 44455556 458998854 43222 126899999999998 888899 999999999886555 565543222223
Q ss_pred EEEEEEEEEEecC----C---CC--CCCCCCeeecccccCc
Q psy9547 310 KWNMDVYSGTAKE----K---TI--PANKTYKLITETQMKK 341 (363)
Q Consensus 310 ~~~l~~~~~~~~~----~---~~--~~~~~~~W~~~~el~~ 341 (363)
...+++|.+.... + .. .+..+..|++++++.+
T Consensus 138 ~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~ 178 (209)
T 1g0s_A 138 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 178 (209)
T ss_dssp CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred CcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence 3567788887521 1 11 2334678999999865
No 86
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.08 E-value=7.4e-11 Score=103.39 Aligned_cols=102 Identities=6% Similarity=-0.086 Sum_probs=71.6
Q ss_pred EEEEEEEe-CCceEEEeecCCCcc------ccccccccccCCCC-CchHHH-HHHHhhCCCcccccccccccEEEEccce
Q psy9547 239 LLTVVVKT-DTNKYLIQKRPTTGL------LSNFYMFLSFESDT-PYTSQV-EFLSENLPFKVNLNEKCLGNVKHVFSHL 309 (363)
Q Consensus 239 v~~~ii~~-~~~~vLl~~R~~~~~------~~glWEFPggk~e~-~~~~al-rEl~Eelgl~v~~~~~~l~~v~h~~sh~ 309 (363)
.+++++.+ +++++|+.++...+. .+|.|+||||+++. ++++|+ ||+.||+|+++.... .++.+.+..++.
T Consensus 47 av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~vegE~~~~aa~REl~EEtG~~~~~~~-~l~~~~~~~~~~ 125 (191)
T 3o6z_A 47 GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVR-KLFELYMSPGGV 125 (191)
T ss_dssp EEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECCSSCHHHHHHHHHHHHC-CCCSCEE-EEEEEESCTTTB
T ss_pred EEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeCCCCHHHHHHHHHHHHhCCccCcEE-EEEEEEeCCCcc
Confidence 34444555 358999987643332 67899999999986 788888 999999999986655 666655444455
Q ss_pred EEEEEEEEEEecCC-------C-CCCCCCCeeecccccCc
Q psy9547 310 KWNMDVYSGTAKEK-------T-IPANKTYKLITETQMKK 341 (363)
Q Consensus 310 ~~~l~~~~~~~~~~-------~-~~~~~~~~W~~~~el~~ 341 (363)
...+++|.+..... . ..+..+..|++++++.+
T Consensus 126 ~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 165 (191)
T 3o6z_A 126 TELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALE 165 (191)
T ss_dssp CCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHH
T ss_pred CcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHH
Confidence 56678888886531 1 23556789999999865
No 87
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.07 E-value=4.3e-10 Score=104.11 Aligned_cols=107 Identities=10% Similarity=-0.033 Sum_probs=72.4
Q ss_pred ceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccc-cccccEEEEcc--ceEEEEEEEEEEecC
Q psy9547 249 NKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNE-KCLGNVKHVFS--HLKWNMDVYSGTAKE 322 (363)
Q Consensus 249 ~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~-~~l~~v~h~~s--h~~~~l~~~~~~~~~ 322 (363)
++||+.+|... .+.|.|+||||.+++ ++++|+ ||+.||+|+++.... ..+.++.+... ..++...+|.+.+..
T Consensus 56 ~~VLLv~R~~~-p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~~~~ 134 (273)
T 2fml_A 56 LKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGE 134 (273)
T ss_dssp EEEEEEEECSS-SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECCC
T ss_pred cEEEEEEccCC-CCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEEeCC
Confidence 48999999544 678999999999999 888888 999999998765432 02333222211 123456677777654
Q ss_pred CCC---CCCCCCeeeccccc-----------------------CcCCCChHHHHHHHHHH
Q psy9547 323 KTI---PANKTYKLITETQM-----------------------KKYAFPVPYQKVWKLFT 356 (363)
Q Consensus 323 ~~~---~~~~~~~W~~~~el-----------------------~~~~~~~a~~~il~~l~ 356 (363)
+.. .+..+.+|++++++ ...+++-.+..|+....
T Consensus 135 ~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~Il~~al 194 (273)
T 2fml_A 135 EPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAF 194 (273)
T ss_dssp CCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHHHH
T ss_pred CCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHHHHHHHH
Confidence 322 24456799999963 34567777777776543
No 88
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=98.95 E-value=8.1e-10 Score=98.31 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=60.1
Q ss_pred ceEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCcccccccccccEE--EEccceEEEEEEEEEEecC-
Q psy9547 249 NKYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVNLNEKCLGNVK--HVFSHLKWNMDVYSGTAKE- 322 (363)
Q Consensus 249 ~~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~~~~~~l~~v~--h~~sh~~~~l~~~~~~~~~- 322 (363)
+++||.++...+.-+++|+||||++++ ++++|+ ||+.||+|+.+.... .+..+. +.+++..+++.++.+....
T Consensus 77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~ 155 (212)
T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE-CSPAVCMDPGLSNCTIHIVTVTINGDDA 155 (212)
T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEE-ECCCEESCTTTBCCEEEEEEEEEETTSG
T ss_pred cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceE-EeccEEcCCCccCceEEEEEEEEeCccc
Confidence 478887632223347899999999998 788888 999999999876655 444432 1244444444333333221
Q ss_pred -----C-C--CCCCCCCeeecccccCc
Q psy9547 323 -----K-T--IPANKTYKLITETQMKK 341 (363)
Q Consensus 323 -----~-~--~~~~~~~~W~~~~el~~ 341 (363)
. . ..+..++.|++++++.+
T Consensus 156 ~~~~~~~~~~~~E~~~~~w~~~~el~~ 182 (212)
T 2dsc_A 156 ENARPKPKPGDGEFVEVISLPKNDLLQ 182 (212)
T ss_dssp GGSSCCCCCCTTCCCEEEEEEGGGHHH
T ss_pred cccCCCCCCCCCceEEEEEEEHHHHHH
Confidence 1 1 12556789999999865
No 89
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=98.92 E-value=7.2e-10 Score=99.19 Aligned_cols=78 Identities=3% Similarity=-0.171 Sum_probs=53.5
Q ss_pred cccccccccCCCC---CchHHH-HHHHhhCCCcc--cccccccccEEEEccceEEEEEEEEEEecC------C--C--CC
Q psy9547 263 SNFYMFLSFESDT---PYTSQV-EFLSENLPFKV--NLNEKCLGNVKHVFSHLKWNMDVYSGTAKE------K--T--IP 326 (363)
Q Consensus 263 ~glWEFPggk~e~---~~~~al-rEl~Eelgl~v--~~~~~~l~~v~h~~sh~~~~l~~~~~~~~~------~--~--~~ 326 (363)
+++||||||++|+ ++++|+ ||+.||+|+.+ .... .++++.+........+++|.+.... + . ..
T Consensus 94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~-~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~ 172 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLR-RVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEG 172 (218)
T ss_dssp CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCE-EEEEEEEC---CCEEEEEEEEEECGGGBCC---------
T ss_pred CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceE-EEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCC
Confidence 7999999999986 788888 99999999988 4344 5555444322334456778777542 1 1 12
Q ss_pred CCCCCeeecccccCc
Q psy9547 327 ANKTYKLITETQMKK 341 (363)
Q Consensus 327 ~~~~~~W~~~~el~~ 341 (363)
|..+..|++++++.+
T Consensus 173 E~~ev~wv~l~el~~ 187 (218)
T 3q91_A 173 ELIEVVHLPLEGAQA 187 (218)
T ss_dssp CCEEEEEEEGGGHHH
T ss_pred cEEEEEEEEHHHHHH
Confidence 456778999999864
No 90
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.86 E-value=6.3e-09 Score=93.80 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=79.3
Q ss_pred eEEEeecCCC-ccccccccccccCCCC--C--------------------chHHH-HHHHhhCCCccccccc--------
Q psy9547 250 KYLIQKRPTT-GLLSNFYMFLSFESDT--P--------------------YTSQV-EFLSENLPFKVNLNEK-------- 297 (363)
Q Consensus 250 ~vLl~~R~~~-~~~~glWEFPggk~e~--~--------------------~~~al-rEl~Eelgl~v~~~~~-------- 297 (363)
+||+.||..+ .+++|.|.||||++++ + ...|+ ||+.||+|+.+.....
T Consensus 25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~ 104 (232)
T 3qsj_A 25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTP 104 (232)
T ss_dssp EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCSC
T ss_pred EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccChh
Confidence 8999999766 4679999999999998 2 24566 9999999997542210
Q ss_pred ------------------------------ccccEEEEc----cceEEEEEEEEEEecCCC-----CCCCCCCeeecccc
Q psy9547 298 ------------------------------CLGNVKHVF----SHLKWNMDVYSGTAKEKT-----IPANKTYKLITETQ 338 (363)
Q Consensus 298 ------------------------------~l~~v~h~~----sh~~~~l~~~~~~~~~~~-----~~~~~~~~W~~~~e 338 (363)
.+..+.|-. -.++++.++|.+...... ..|..+..|++++|
T Consensus 105 ~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~e 184 (232)
T 3qsj_A 105 LAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARD 184 (232)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHH
T ss_pred hHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHH
Confidence 112222211 135688889988766321 23566789999999
Q ss_pred c------CcCCCChHHHHHHHHHHhh
Q psy9547 339 M------KKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 339 l------~~~~~~~a~~~il~~l~~~ 358 (363)
. ..+.++++...+|..|.+.
T Consensus 185 al~~~~~G~i~L~pPT~~~L~~L~~~ 210 (232)
T 3qsj_A 185 MLTRIQSGELPAVRPTIAVLKALVAC 210 (232)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHcCCceechhHHHHHHHHHcC
Confidence 9 6899999999999998764
No 91
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.85 E-value=6.5e-09 Score=98.13 Aligned_cols=107 Identities=10% Similarity=0.101 Sum_probs=78.7
Q ss_pred EEEEEEEeCCceEEEeecCCCccccccccccccCCCCCchHHH-HHHHhhC-CCcccccccccccEEEEccceEEEEEEE
Q psy9547 239 LLTVVVKTDTNKYLIQKRPTTGLLSNFYMFLSFESDTPYTSQV-EFLSENL-PFKVNLNEKCLGNVKHVFSHLKWNMDVY 316 (363)
Q Consensus 239 v~~~ii~~~~~~vLl~~R~~~~~~~glWEFPggk~e~~~~~al-rEl~Eel-gl~v~~~~~~l~~v~h~~sh~~~~l~~~ 316 (363)
+++++|+..+|+|||. +. .| |.+|||.++.+..+++ ||..||+ |++|+... .+.-..+. .+..+. .+|
T Consensus 184 ~~vgaii~~~g~vLL~--~~----~G-W~LPG~~~~~~~~~~a~RE~~EEttGl~v~~~~-L~~v~~~~-~~~~~~-i~f 253 (321)
T 3rh7_A 184 IRLGAVLEQQGAVFLA--GN----ET-LSLPNCTVEGGDPARTLAAYLEQLTGLNVTIGF-LYSVYEDK-SDGRQN-IVY 253 (321)
T ss_dssp EEEEEEEESSSCEEEB--CS----SE-EBCCEEEESSSCHHHHHHHHHHHHHSSCEEEEE-EEEEEECT-TTCCEE-EEE
T ss_pred ceEEEEEEECCEEEEe--eC----CC-ccCCcccCCCChhHHHHHHHHHHhcCCEEeece-EEEEEEcC-CCceEE-EEE
Confidence 4555555555999999 22 57 9999998877555666 9999998 99998765 44333322 222333 489
Q ss_pred EEEecCCCCCCCCCCeeecccccCcCCCC-hHHHHHHHHHHhh
Q psy9547 317 SGTAKEKTIPANKTYKLITETQMKKYAFP-VPYQKVWKLFTKS 358 (363)
Q Consensus 317 ~~~~~~~~~~~~~~~~W~~~~el~~~~~~-~a~~~il~~l~~~ 358 (363)
.|+..+|. ..+++|++++||+...+. ++++.+|+.+.+.
T Consensus 254 ~~~~~~g~---~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e 293 (321)
T 3rh7_A 254 HALASDGA---PRQGRFLRPAELAAAKFSSSATADIINRFVLE 293 (321)
T ss_dssp EEEECSSC---CSSSEEECHHHHTTCEESSHHHHHHHHHHHHT
T ss_pred EEEeCCCC---eeeeEEECHHHCCCcccCCHHHHHHHHHHHHH
Confidence 99987754 377899999999998875 8888999988764
No 92
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=98.78 E-value=1.6e-08 Score=94.35 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=68.7
Q ss_pred eEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCCccc-----------cccccccc--EEEEc------c
Q psy9547 250 KYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPFKVN-----------LNEKCLGN--VKHVF------S 307 (363)
Q Consensus 250 ~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl~v~-----------~~~~~l~~--v~h~~------s 307 (363)
+||+.||... |.|+||||+++. ++++|+ ||+.||+|+.+. ... .+.+ -.+.| +
T Consensus 140 ~vLl~~r~~~----g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~-~l~~~~g~~vy~~~~~dp 214 (292)
T 1q33_A 140 QFVAIKRKDC----GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLH-KLFSQDHLVIYKGYVDDP 214 (292)
T ss_dssp EEEEEECTTT----CSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHH-HHTTTSEEEEEEEECCCT
T ss_pred EEEEEEecCC----CcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHH-HHhhcccceeecccccCC
Confidence 6999999653 899999999998 788888 999999999841 112 2222 11111 1
Q ss_pred c----eEEEEEEEEEEecCCC---------CCCCCCCeeecccccCcCCCChHHHHHHHHHHhh
Q psy9547 308 H----LKWNMDVYSGTAKEKT---------IPANKTYKLITETQMKKYAFPVPYQKVWKLFTKS 358 (363)
Q Consensus 308 h----~~~~l~~~~~~~~~~~---------~~~~~~~~W~~~~el~~~~~~~a~~~il~~l~~~ 358 (363)
. ..+...+|.+....+. ..+..+++|++++++.+ +.+.+..+|+.+.+.
T Consensus 215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~--L~~~h~~il~~~~~~ 276 (292)
T 1q33_A 215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK--LYASHSQFIKLVAEK 276 (292)
T ss_dssp TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC--CSTTHHHHHHHHHHH
T ss_pred CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcc--cCHhHHHHHHHHHHH
Confidence 1 1344455655543221 12456789999999985 677888898887654
No 93
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.65 E-value=1.3e-08 Score=91.03 Aligned_cols=87 Identities=15% Similarity=-0.017 Sum_probs=56.2
Q ss_pred ceEEEeecCCCccccccccccccCCCC---CchHHH-HHHHhhCCCccccccc-ccccE-EEEccceEEEEEEEEEEecC
Q psy9547 249 NKYLIQKRPTTGLLSNFYMFLSFESDT---PYTSQV-EFLSENLPFKVNLNEK-CLGNV-KHVFSHLKWNMDVYSGTAKE 322 (363)
Q Consensus 249 ~~vLl~~R~~~~~~~glWEFPggk~e~---~~~~al-rEl~Eelgl~v~~~~~-~l~~v-~h~~sh~~~~l~~~~~~~~~ 322 (363)
+++|+.+|. .|.|+||||++|+ ++++|+ ||++||+|+++..... .+..+ .+.....+....+|.+.+..
T Consensus 65 ~~~ll~~r~-----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~ 139 (217)
T 2xsq_A 65 YAILMQMRF-----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL 139 (217)
T ss_dssp EEEEEEEET-----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred CcEEEEEcc-----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence 356776663 6899999999997 467788 9999999998874210 12211 12222235566778887643
Q ss_pred CCC--------------CCCCCCeeecccccC
Q psy9547 323 KTI--------------PANKTYKLITETQMK 340 (363)
Q Consensus 323 ~~~--------------~~~~~~~W~~~~el~ 340 (363)
+.. .+..+..|++++++.
T Consensus 140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred ccceecccccccccccCCceeeEEEEEHHHhh
Confidence 211 122345799999997
No 94
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.42 E-value=5.2e-08 Score=84.87 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred eEEEEEEEeCCc--eEEEeecCCCccccccccccccCCCC--CchHHH-HHHHhhCCC
Q psy9547 238 FLLTVVVKTDTN--KYLIQKRPTTGLLSNFYMFLSFESDT--PYTSQV-EFLSENLPF 290 (363)
Q Consensus 238 ~v~~~ii~~~~~--~vLl~~R~~~~~~~glWEFPggk~e~--~~~~al-rEl~Eelgl 290 (363)
.|.+++++++++ +||+.|++. +.|+|||||+|+ ++++++ |||.||+|+
T Consensus 60 sV~avil~~~~~~phVLLlq~~~-----~~f~LPGGkle~gE~~~eaL~REL~EELg~ 112 (208)
T 3bho_A 60 TVEGVLIVHEHRLPHVLLLQLGT-----TFFKLPGGELNPGEDEVEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEEETTEEEEEEEEEET-----TEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred EEEEEEEEcCCCCcEEEEEEcCC-----CcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence 455555555534 799999843 489999999999 788999 999999994
No 95
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=98.37 E-value=5.6e-07 Score=83.88 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=65.5
Q ss_pred eEEEeecCCC-ccccccc-cccccCCCC--CchHHH-HHHHhhCCCcccccc--cccccEEEEcc--c--eEEEEEEEEE
Q psy9547 250 KYLIQKRPTT-GLLSNFY-MFLSFESDT--PYTSQV-EFLSENLPFKVNLNE--KCLGNVKHVFS--H--LKWNMDVYSG 318 (363)
Q Consensus 250 ~vLl~~R~~~-~~~~glW-EFPggk~e~--~~~~al-rEl~Eelgl~v~~~~--~~l~~v~h~~s--h--~~~~l~~~~~ 318 (363)
++||+||... ..+.|+| .+|+|.+++ ++.+|+ ||+.||+|+.+.... ...+.+++.+. . .+-.+++|.+
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~ 213 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL 213 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEE
Confidence 8999999776 4799999 699999988 888998 999999999875322 13444554432 1 1223567777
Q ss_pred EecCC-----CCCCCCCCeeecccccCc
Q psy9547 319 TAKEK-----TIPANKTYKLITETQMKK 341 (363)
Q Consensus 319 ~~~~~-----~~~~~~~~~W~~~~el~~ 341 (363)
.+..+ +..|..+++|++++|+.+
T Consensus 214 ~l~~~~~p~~~~~EV~~~~~v~~~El~~ 241 (300)
T 3dup_A 214 ALPEDFRPHNTDGEMADFMLWPAAKVVE 241 (300)
T ss_dssp ECCTTCCCCCTTSSEEEEEEEEHHHHHH
T ss_pred EecCCCcCCCCchHhheEEEECHHHHHH
Confidence 66532 123567889999998854
No 96
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=95.10 E-value=0.22 Score=42.45 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHhhhcchhhHHHHHHHHHHhCC--CHHHHhcCCHHHHHHHHhccCch--H-HHHHHHHHHHHhhH---H
Q psy9547 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYP--TIKDFAFDTEDNVLKMWEGLGYY--S-RVRNFQAGCRQVIE---Q 105 (363)
Q Consensus 34 ~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~~~~lG~~--~-rA~~l~~~a~~i~~---~ 105 (363)
+--||.|+-+.+-.-.+|.++.+-.+.|.+.|- +|+.+|..++++|+.++..-|.- + |.+.++.=|+.+.+ +
T Consensus 29 ~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e 108 (186)
T 2jg6_A 29 KALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQA 108 (186)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 446888999988888899999999999999985 89999999999999999988874 2 56666666666543 3
Q ss_pred hCC----------------------CCcc-------cHHHHhc--CCCCcHHHHHHHHHH
Q psy9547 106 FGG----------------------EVPR-------DKKQLLS--IKGVGDYTAGALASI 134 (363)
Q Consensus 106 ~~g----------------------~~p~-------~~~~L~~--lpGIG~~tA~~il~~ 134 (363)
||+ ++|. .-++|.+ ++-|||-|+-++|.-
T Consensus 109 ~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGpt~~YafmQA 168 (186)
T 2jg6_A 109 YGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEA 168 (186)
T ss_dssp HSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeechHHHHHHHHH
Confidence 332 1221 1345665 889999999888764
No 97
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=94.40 E-value=0.36 Score=41.01 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=76.2
Q ss_pred CChHHHHHHHHHhhhcchhhHHHHHHHHHHhCC--CHHHHhcCCHHHHHHHHhccCch--H-HHHHHHHHHHHhhH---H
Q psy9547 34 NNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYP--TIKDFAFDTEDNVLKMWEGLGYY--S-RVRNFQAGCRQVIE---Q 105 (363)
Q Consensus 34 ~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~~~~lG~~--~-rA~~l~~~a~~i~~---~ 105 (363)
+--||.|+-+++-.-.++.++.+-.+.|.+.|- +|+.+|..++++|+.++..-|.- + |.+.+++-|+.+.+ +
T Consensus 29 ~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e 108 (183)
T 2ofk_A 29 RKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQN 108 (183)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 446889999999888899999999999999985 89999999999999999988874 2 66677776766654 3
Q ss_pred hCC----------------------CCcc-------cHHHHhc--CCCCcHHHHHHHHH
Q psy9547 106 FGG----------------------EVPR-------DKKQLLS--IKGVGDYTAGALAS 133 (363)
Q Consensus 106 ~~g----------------------~~p~-------~~~~L~~--lpGIG~~tA~~il~ 133 (363)
||+ ++|. .-++|.+ ++-|||-|+-++|.
T Consensus 109 ~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGpT~~yafmQ 167 (183)
T 2ofk_A 109 GESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQ 167 (183)
T ss_dssp TCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred cCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecChHHHHHHHH
Confidence 322 0111 1244655 88899999877765
No 98
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.80 E-value=0.047 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.4
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
+..+.|.+|||||+|||.-+..+-+.+
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 457888999999999999877665533
No 99
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=91.08 E-value=0.41 Score=36.29 Aligned_cols=59 Identities=7% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 68 IKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 68 ~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+-+|..++.++|.. +.++|. ..|+.|.+.-. . .|.+ .+.++|.++||||+++++.+...
T Consensus 31 ~i~iN~a~~~~L~~-ipGIG~-~~A~~Il~~r~---~--~g~f-~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQRIGP-KKAQLIVGWRE---L--HGPF-SQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHHSCHHHHHH-STTCCH-HHHHHHHHHHH---H--HCCC-SSGGGGGGSTTCCHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CCCCCH-HHHHHHHHHHH---h--cCCc-CCHHHHHhCCCCCHHHHHHHHHC
Confidence 34566777777654 566664 24555544311 1 2445 56888999999999999988765
No 100
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=90.50 E-value=0.21 Score=35.51 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.3
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.+.++|.++||||+++|..|..+.
T Consensus 43 a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 368889999999999999887653
No 101
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=90.50 E-value=1.2 Score=41.77 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhcc
Q psy9547 7 AKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGL 86 (363)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~l 86 (363)
..++-.+++.|..+|+..+ .|||.+.-- .+|.. -++.+|.+ |. +.+++ .-+.++
T Consensus 12 N~~i~~~L~~ia~l~e~~~--------~~~~rv~AY---------r~Aa~----~l~~l~~~--i~--~~~~l-~~LpGI 65 (335)
T 2fmp_A 12 NGGITDMLTELANFEKNVS--------QAIHKYNAY---------RKAAS----VIAKYPHK--IK--SGAEA-KKLPGV 65 (335)
T ss_dssp THHHHHHHHHHHHHHHHTT--------CCHHHHHHH---------HHHHH----HHHHCSSC--CC--CHHHH-HTSTTC
T ss_pred cHHHHHHHHHHHHHHHhcC--------CCcHHHHHH---------HHHHH----HHHhCCcc--cc--CHHHH-hcCCCC
Confidence 3566777888888887432 366765511 11222 13445432 21 22333 334566
Q ss_pred CchHHHHHHHHHHHH----hhHHhCCCC-cccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 87 GYYSRVRNFQAGCRQ----VIEQFGGEV-PRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 87 G~~~rA~~l~~~a~~----i~~~~~g~~-p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
|= +-|..|.++.+. -+++...+. |..+.+|+++||||++||..+-.-
T Consensus 66 G~-~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 66 GT-KIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp CH-HHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred cH-HHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 63 134445443321 000011122 567899999999999999987543
No 102
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=90.04 E-value=0.2 Score=43.94 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.5
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
+..+.|.+|||||+|||.-+..+-+.+
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 457889999999999999777665433
No 103
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=89.89 E-value=0.54 Score=47.37 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHHHh--CCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHH-------------------------HHHhhHHh
Q psy9547 55 LPYYEKFIKT--YPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAG-------------------------CRQVIEQF 106 (363)
Q Consensus 55 ~~~~~~l~~~--~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~-------------------------a~~i~~~~ 106 (363)
...++.|++. .-++.+|..++.++|..+ =||.. +|.+|.+. |+.+.+.|
T Consensus 456 ~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f 532 (586)
T 4glx_A 456 DKIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYF 532 (586)
T ss_dssp HHHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHc
Confidence 3455566654 368889999988876552 36654 56666433 33344444
Q ss_pred CCCC----cccHHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhhc
Q psy9547 107 GGEV----PRDKKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRLF 155 (363)
Q Consensus 107 ~g~~----p~~~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl~ 155 (363)
+. + ..+.++|.+++|||+.+|+.|..|-- |-+.+.++.+|.
T Consensus 533 ~s-l~~l~~a~~e~l~~i~giG~~~A~si~~ff~-------~~~n~~~i~~L~ 577 (586)
T 4glx_A 533 GT-LEALEAASIEELQKVPDVGIVVASHVHNFFA-------EESNRNVISELL 577 (586)
T ss_dssp CS-HHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH-------SHHHHHHHHHHH
T ss_pred CC-HHHHHccCHHHHhcCCCccHHHHHHHHHHHc-------CHHHHHHHHHHH
Confidence 32 2 13578899999999999999888632 344555555553
No 104
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=89.54 E-value=0.18 Score=44.07 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.4
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
.+.+.|.++||||+|||+.|..---++
T Consensus 120 ~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 120 GNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987654343
No 105
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.27 E-value=0.23 Score=35.66 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.9
Q ss_pred cHHHHhcCCCCcHHHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+.++|.++||||+++|..|+..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5788999999999999999985
No 106
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.17 E-value=0.28 Score=36.48 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.+.++|.++||||+++|..+..+.
T Consensus 48 a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 367889999999999999988764
No 107
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=89.11 E-value=0.25 Score=35.79 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.3
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.+.++|.++||||+++|..|..+
T Consensus 53 a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 53 ASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CCHHHHTTSSSTTSHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHH
Confidence 36788999999999999988764
No 108
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.10 E-value=0.28 Score=36.65 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.4
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.+.++|.+++|||+++|..|..+.
T Consensus 61 as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 61 ASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 468899999999999999987763
No 109
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=88.98 E-value=1.1 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHH
Q psy9547 57 YYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAG 98 (363)
Q Consensus 57 ~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~ 98 (363)
...+|+++|.|+++|.+|+.+||.++ +|-..+|+.|.+.
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~v---ig~~~~A~~I~~~ 54 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDF 54 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH---HSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---cCchHHHHHHHHH
Confidence 34578899999999999999999998 5532237777653
No 110
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.80 E-value=0.24 Score=42.65 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.+.++|.++||||++||+.|...-
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 578999999999999999997654
No 111
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.91 E-value=0.29 Score=42.52 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.+.++|.++||||++||..|...-
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 578999999999999999997653
No 112
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=87.61 E-value=1.1 Score=42.03 Aligned_cols=57 Identities=7% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHhccCch-HHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 77 DNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 77 ~el~~~~~~lG~~-~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
+++..+++-.|=. .|++...++|..|.. +...+ .+..+|.+|||||+.+|+.|.-+.
T Consensus 20 ~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~~~i-~~~~~l~~LpGIG~~~A~kI~E~l 77 (335)
T 2fmp_A 20 TELANFEKNVSQAIHKYNAYRKAASVIAK-YPHKI-KSGAEAKKLPGVGTKIAEKIDEFL 77 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH-CSSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444554434432 388888888888765 34444 357789999999999999998884
No 113
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=86.90 E-value=1.2 Score=41.78 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 91 RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 91 rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
|++...++|..|.. +...+ .+.++|.+|||||+.+|+.|.-+.
T Consensus 35 r~~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l 77 (335)
T 2bcq_A 35 RALGYAKAINALKS-FHKPV-TSYQEACSIPGIGKRMAEKIIEIL 77 (335)
T ss_dssp HHHHHHHHHHHHHS-CCSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCccHHHHHHHHHHH
Confidence 77777777777754 33333 346678889999999998888773
No 114
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.70 E-value=4.5 Score=40.64 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=58.0
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHHhhhcchhhHHHHHHHHHHhCC-CHHHHhcCCHHHHHHHH
Q psy9547 5 LSAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVMLQQTQVKTVLPYYEKFIKTYP-TIKDFAFDTEDNVLKMW 83 (363)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~p-t~~~la~a~~~el~~~~ 83 (363)
|+..++..+++.|...++..+ .|||.+.-- .+|. +-++.+| ..+++.+.+.+.+.. +
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g--------~~~~r~~aY---------r~Aa----~~l~~~~~~i~~~~~~~~~~~~~-l 58 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLG--------DNPFRVRAY---------HQAA----RTLYDLDTPIEEIAEKGKEALME-L 58 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT--------CCHHHHHHH---------HHHH----HHHHHCCSCHHHHHTTCHHHHHT-S
T ss_pred CChHHHHHHHHHHHHHHHhcC--------CCchhHHHH---------HHHH----HHHHhCCcchhhHhhcchhHHHh-C
Confidence 355678888888888888654 366765410 1111 1234555 455555544221222 2
Q ss_pred hccCchHHHHHHHHHHHH----hhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 84 EGLGYYSRVRNFQAGCRQ----VIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 84 ~~lG~~~rA~~l~~~a~~----i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.++|= .=+.+|.+..+. ..+....+.+.....|++++||||+||-.++..
T Consensus 59 p~iG~-~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 59 PGVGP-DLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp TTCCH-HHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 33442 123344332221 000001123567899999999999999999874
No 115
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.56 E-value=0.95 Score=42.83 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=39.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 78 NVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 78 el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
++..++.-.|-..|++...++|..|.. +...+ .+.++|.+|||||+.+|+.|.-+.
T Consensus 26 ~ia~~~e~~g~~~r~~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l 81 (360)
T 2ihm_A 26 TLAEAAGFEANEGRLLSFSRAASVLKS-LPCPV-ASLSQLHGLPYFGEHSTRVIQELL 81 (360)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-CSSCC-CSGGGGTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHh-CCccc-CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 444444445522388888888888765 34434 346679999999999999998884
No 116
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.30 E-value=1.2 Score=42.07 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=21.2
Q ss_pred CCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 109 EVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 109 ~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
..|..+.+|+++||||++||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 34567889999999999999988543
No 117
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=86.06 E-value=0.75 Score=47.04 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=42.3
Q ss_pred HHHHHHhC--CCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHH-------------------------HHHhhHHhCC-
Q psy9547 58 YEKFIKTY--PTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAG-------------------------CRQVIEQFGG- 108 (363)
Q Consensus 58 ~~~l~~~~--pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~-------------------------a~~i~~~~~g- 108 (363)
...|.+.+ -|+.+|..+..++|..+ . ||.. ++.+|.+. |+.+.+.|+.
T Consensus 454 i~~L~~~g~I~~~~DL~~L~~e~L~~l-~--g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl 530 (667)
T 1dgs_A 454 IERLLEKGLVRDVADLYHLRKEDLLGL-E--RMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTM 530 (667)
T ss_dssp HHHHHHTTSCSSGGGGGGGCCHHHHTT-S--SCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBH
T ss_pred HHHHHHcCCCCCHHHHHhcCHHHHhcc-c--ccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCH
Confidence 34455554 48888888887666542 2 5543 45555443 2333333322
Q ss_pred --CCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 109 --EVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 109 --~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
..-.+.++|.+++|||+++|+.|..|
T Consensus 531 ~~l~~As~eeL~~I~GIG~~~A~sI~~f 558 (667)
T 1dgs_A 531 DRLLEASLEELIEVEEVGELTARAILET 558 (667)
T ss_dssp HHHTTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHhccCcCHHHHHHHHHH
Confidence 11235677777777777777777665
No 118
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.96 E-value=1.1 Score=42.60 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=39.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 78 NVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 78 el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
++..++.-.|-..|++...++|..|.. +...+ .+.++|.+|||||+.+|+.|--+.
T Consensus 45 ~ia~~~e~~g~~~rv~AYr~Aa~~l~~-l~~~i-~~~~~l~~lpGIG~~ia~kI~E~l 100 (381)
T 1jms_A 45 ILAENDELRENEGSCLAFMRASSVLKS-LPFPI-TSMKDTEGIPCLGDKVKSIIEGII 100 (381)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT-CSSCC-CSGGGGTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHh-CCccc-cCHHHHhcCCCCcHHHHHHHHHHH
Confidence 444444445622388888898888865 33333 345679999999999999998884
No 119
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=84.79 E-value=0.39 Score=38.56 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.8
Q ss_pred ccHHHHhcCCCCcHHHHHHHHH
Q psy9547 112 RDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~ 133 (363)
.+.++|.+||||||..|..|..
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH
T ss_pred cCHHHHHHCCCCCHHHHHHHHH
Confidence 3689999999999999999994
No 120
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=84.22 E-value=0.41 Score=41.17 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.6
Q ss_pred CcccHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 110 VPRDKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
+-.+.++|..|||||+++|..|+.+-
T Consensus 127 ITA~~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 127 ITTRMHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp BCSSSBGGGGSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhcCCCcCHHHHHHHHHHH
Confidence 44578899999999999999999873
No 121
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=83.93 E-value=0.41 Score=36.44 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.1
Q ss_pred ccHHHHhcCCCCcHHHHHHHHH
Q psy9547 112 RDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~ 133 (363)
.+.++|.+|||||+.+|..|..
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH
Confidence 3588999999999999999998
No 122
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=83.92 E-value=0.39 Score=38.57 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHHhccCch-HHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 68 IKDFAFDTEDNVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 68 ~~~la~a~~~el~~~~~~lG~~-~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.-+|-.|+.+++.. + -|.+ .+|+.|. + +|.+ .+.++|.+++|||+++.+.+--+
T Consensus 54 kIniNtA~~~eL~~-L--pGiGp~~A~~II-------~--~GpF-~svedL~~V~GIg~k~~e~l~~~ 108 (134)
T 1s5l_U 54 KIDLNNTNIAAFIQ-Y--RGLYPTLAKLIV-------K--NAPY-ESVEDVLNIPGLTERQKQILREN 108 (134)
T ss_dssp SEETTTSCGGGGGG-S--TTCTHHHHHHHH-------H--TCCC-SSGGGGGGCTTCCHHHHHHHHHH
T ss_pred eeeCcccCHHHHHH-C--CCCCHHHHHHHH-------H--cCCC-CCHHHHHhCCCCCHHHHHHHHHh
Confidence 34566778777765 3 3665 4777776 2 4655 57999999999999988766443
No 123
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=83.80 E-value=1.1 Score=42.73 Aligned_cols=25 Identities=32% Similarity=0.185 Sum_probs=21.0
Q ss_pred CCcccHHHHhcCCCCcHHHHHHHHH
Q psy9547 109 EVPRDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 109 ~~p~~~~~L~~lpGIG~~tA~~il~ 133 (363)
..|..+.+|+++||||++||..+-.
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred cchhHHHHHHccCCCCHHHHHHHHH
Confidence 3566788999999999999998844
No 124
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=83.67 E-value=0.73 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q psy9547 114 KKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~ 134 (363)
...|.+|||||++++..+|..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHH
Confidence 356889999999999988864
No 125
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=83.67 E-value=0.32 Score=37.03 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=40.2
Q ss_pred CCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 65 YPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 65 ~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.+.+-+|-.|+.++|.. +.++|. .+|+.|.+ +|.+ .++++|.+++|||+++.+-+.-+
T Consensus 14 ~~~~vdiNtAs~~eL~~-lpGIG~-~~A~~IV~---------~GpF-~s~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQ-YRGLYP-TLAKLIVK---------NAPY-ESVEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp GGTSEETTTSCGGGGGG-STTCTT-HHHHHHHH---------HCCC-SSGGGGGGCTTCCHHHHHHHHHT
T ss_pred cCCceeCCcCCHHHHhH-CCCCCH-HHHHHHHH---------cCCC-CCHHHHHhccCCCHHHHHHHHHH
Confidence 44455677788877765 445553 36666655 2544 57999999999999998877653
No 126
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.57 E-value=2.2 Score=31.35 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHHH
Q psy9547 57 YYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGC 99 (363)
Q Consensus 57 ~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a 99 (363)
...+|+..|.|++.|.+|+.+||.++ +|-..+|+.|.+..
T Consensus 30 r~~~LL~~FgSl~~i~~AS~eEL~~v---ig~~~~A~~I~~~l 69 (84)
T 1z00_B 30 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHHSSCHHHHHHSCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---hCchHHHHHHHHHH
Confidence 34578899999999999999999998 56323477776643
No 127
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.10 E-value=0.82 Score=32.66 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=37.3
Q ss_pred CHHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 67 TIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 67 t~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.+-++..++.++|.. +.|+|- .+|+.|.+ .+ --.+.++|.++||||+++++.+.-+
T Consensus 17 ~~idiN~a~~~~L~~-ipGIG~-~~A~~Il~-------~r---~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 17 TPVSLNEASLEELMA-LPGIGP-VLARRIVE-------GR---PYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp CSEETTTCCHHHHTT-STTCCH-HHHHHHHH-------TC---CCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred CccChhhCCHHHHHh-CCCCCH-HHHHHHHH-------Hc---ccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 345566778777655 455553 24555543 22 1257899999999999999987644
No 128
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=82.42 E-value=2.4 Score=43.38 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHh--CCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHH-------------------------HHhhHHhCCC
Q psy9547 58 YEKFIKT--YPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGC-------------------------RQVIEQFGGE 109 (363)
Q Consensus 58 ~~~l~~~--~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a-------------------------~~i~~~~~g~ 109 (363)
+..|.+. .-++.+|..+..++|..+ -||.. .|.+|.+.. +.+.+.|+.-
T Consensus 459 i~~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl 535 (671)
T 2owo_A 459 IDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTL 535 (671)
T ss_dssp HHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSH
T ss_pred HHHHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCH
Confidence 3344444 248888888887776542 35654 466665542 2222222210
Q ss_pred ---CcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 110 ---VPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 110 ---~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
...+.++|.+++|||+.+|..|..|
T Consensus 536 ~~l~~As~eeL~~i~GIG~~~A~sI~~f 563 (671)
T 2owo_A 536 EALEAASIEELQKVPDVGIVVASHVHNF 563 (671)
T ss_dssp HHHHTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHhhcCCCCHHHHHHHHHH
Confidence 1124667777777777777777665
No 129
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=81.93 E-value=2.1 Score=31.74 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 91 RVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 91 rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
++....+++..+.. |...+ .+-.++..|+|||+++++.+--+
T Consensus 36 ~~~~Y~KA~~sLk~-~P~~i-~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPLPL-RSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp THHHHHHHHHHHHH-CCSCC-CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCC-CCHHHHHHhhcccHHHHHHHHHH
Confidence 45566676777665 33322 46889999999999999987543
No 130
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=79.76 E-value=1.1 Score=33.84 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.1
Q ss_pred cHHHHhcCCCCcHHHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+..+|.++||||+.+|..|+..
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5778999999999999999987
No 131
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=78.91 E-value=1.3 Score=32.65 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.7
Q ss_pred cHHHHhcCCCCcHHHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~~ 134 (363)
....|.+|||||++.+..+|..
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 4677889999999999988864
No 132
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=78.30 E-value=2.8 Score=40.12 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=33.2
Q ss_pred HHHHhCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHH------------HHHHHhhHHhCCC------Cc---------
Q psy9547 60 KFIKTYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQ------------AGCRQVIEQFGGE------VP--------- 111 (363)
Q Consensus 60 ~l~~~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~------------~~a~~i~~~~~g~------~p--------- 111 (363)
.+..+|.+..++..++.+++.+ +||+. +...|+ +.|..+.++|+.- +|
T Consensus 533 elkr~ygs~savr~~pv~elre----lg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~ 608 (685)
T 4gfj_A 533 ELKRKYGSASAVRRLPVEELRE----LGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGA 608 (685)
T ss_dssp HHHHHSSCHHHHHHSCHHHHHT----TSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCC
T ss_pred HHHHhhccHHHHHhccHHHHHH----cCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccCC
Confidence 4678899999999999988654 99985 544453 3456666777541 11
Q ss_pred ----------ccHHHHhcCCCCcHHHHHHHHH
Q psy9547 112 ----------RDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 112 ----------~~~~~L~~lpGIG~~tA~~il~ 133 (363)
...+.|+.++||||+.|+-++-
T Consensus 609 ~~~~~~eik~p~~k~ll~~~gv~p~la~r~~e 640 (685)
T 4gfj_A 609 TPKAAAEIKGPEFKFLLNIEGVGPKLAERILE 640 (685)
T ss_dssp GGGC----------------------------
T ss_pred CHHHHHHhcChhHHHhhcccCCCHHHHHHHHH
Confidence 1366788888888888887654
No 133
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=77.21 E-value=1.4 Score=37.76 Aligned_cols=24 Identities=42% Similarity=0.343 Sum_probs=19.6
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 114 KKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
...|.+++||||++|..+|.. |+-
T Consensus 71 f~~L~~v~GIGpk~A~~iL~~-f~~ 94 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSA-LPP 94 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHH-SCH
T ss_pred HHHHhcCCCcCHHHHHHHHHh-CCh
Confidence 456889999999999999974 443
No 134
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=77.19 E-value=1.3 Score=38.59 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=25.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCCcc---ccccchHHHH
Q psy9547 114 KKQLLSIKGVGDYTAGALASICYNIPT---PAVDGNVFRI 150 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~~~~~~---~~vD~~v~Rv 150 (363)
+..|.+++||||++|-.|+. .|+... .+++.++.+.
T Consensus 87 f~~L~sv~GIGpk~A~~Ils-~~~~~~l~~aI~~~d~~~L 125 (212)
T 2ztd_A 87 FLTLLSVSGVGPRLAMAALA-VHDAPALRQVLADGNVAAL 125 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHH-HSCHHHHHHHHHTTCHHHH
T ss_pred HHHhcCcCCcCHHHHHHHHH-hCCHHHHHHHHHhCCHHHH
Confidence 56688999999999999998 455432 2555555544
No 135
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=75.96 E-value=2.3 Score=37.00 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=17.5
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.+.++|.++||||+++|..+..+
T Consensus 191 a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 191 ASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp CCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 45677888888888888877655
No 136
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=75.00 E-value=11 Score=33.68 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCCc
Q psy9547 60 KFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNIP 139 (363)
Q Consensus 60 ~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~~ 139 (363)
.+++.|-+..-+...+.++++.+.....++.-|- .+| ++ -...+|.+-.|||++||+-+|. +||-|
T Consensus 369 eliehfesiagilatdleeiermyeegrlseeay---raa---ve-------iqlaeltkkegvgrktaerllr-afgnp 434 (519)
T 2csb_A 369 ELIEHFESIAGILATDLEEIERMYEEGRLSEEAY---RAA---VE-------IQLAELTKKEGVGRKTAERLLR-AFGNP 434 (519)
T ss_dssp HHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHH---HHH---HH-------HHHHHHHTSTTCCHHHHHHHHH-HHSSH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHcccccHHHH---HHH---HH-------HHHHHHhhhcccchhHHHHHHH-HhCCH
Confidence 3455566666666667766666554333321110 001 11 1256788889999999997654 77765
No 137
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=74.86 E-value=2.7 Score=39.82 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHH
Q psy9547 57 YYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQ 105 (363)
Q Consensus 57 ~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~ 105 (363)
..+++.+.|.|++.+.+|+.+||.++ .|+|- .||+.|++....+..+
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~V-eGIGe-~rAr~IregL~r~~~~ 373 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKV-EGIGE-KRARAISESISSLKHR 373 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTS-TTCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhc-cCccH-HHHHHHHHHHHHHhcc
Confidence 45677888889999999998888653 33441 3788888887777654
No 138
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=72.34 E-value=2 Score=37.11 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 114 KKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
...|.+++||||++|-.+|.. |+-
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~-f~~ 95 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSG-MSA 95 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHH-SCH
T ss_pred HHHHhcCCCcCHHHHHHHHhh-CCh
Confidence 346889999999999999984 443
No 139
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=67.65 E-value=4.1 Score=38.56 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHhhHHhCCC---CcccHHHHhcCCCCcHHHHHHHH
Q psy9547 97 AGCRQVIEQFGGE---VPRDKKQLLSIKGVGDYTAGALA 132 (363)
Q Consensus 97 ~~a~~i~~~~~g~---~p~~~~~L~~lpGIG~~tA~~il 132 (363)
..|+.++++||.. +..+.++|.++.|||+++|..|.
T Consensus 326 ~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 326 SIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 3577777777652 44578888888888888887664
No 140
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=65.35 E-value=6.2 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHH-hCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHHHH
Q psy9547 59 EKFIK-TYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGCRQ 101 (363)
Q Consensus 59 ~~l~~-~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a~~ 101 (363)
.+|.+ .+-|.++||.++.++|..+ .|++. ||..|+..|+.
T Consensus 21 ~kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 21 FKLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 34543 5889999999999999875 58875 99999998887
No 141
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=61.40 E-value=9 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.1
Q ss_pred CcccHHHHhcCCCCcHHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAGA 130 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~~ 130 (363)
.|.+.++|.+++|||++..+.
T Consensus 42 ~P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 42 QPRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp CCCSHHHHTTSTTTCHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHH
Confidence 589999999999999977654
No 142
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=60.77 E-value=7.4 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCccc---HHHHhcCCCCcHHHHHHHHHHh
Q psy9547 108 GEVPRD---KKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 108 g~~p~~---~~~L~~lpGIG~~tA~~il~~~ 135 (363)
-++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 6 ~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 6 INIPDHKHAVIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp SCCCCSSCHHHHGGGSTTCCHHHHHHHHHHT
T ss_pred ccCCCCCEeHhhHhhhcCcCHHHHHHHHHHc
Confidence 345643 6678999999999999999874
No 143
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=59.56 E-value=4.3 Score=40.81 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
.+....+|++++||||++|..++.-
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 4667889999999999999999975
No 144
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=58.90 E-value=18 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=27.6
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHH
Q psy9547 58 YEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQA 97 (363)
Q Consensus 58 ~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~ 97 (363)
.+++.++|+|.+.+++|+++||.. .|+|= .+|+.|..
T Consensus 481 AeRLLEkFGSVe~Vm~AteDELRe--dGIGe-kqarrI~g 517 (685)
T 4gfj_A 481 AERLLKKYGGYSKVREAGVEELRE--DGLTD-AQIRELKG 517 (685)
T ss_dssp HHHHHHHHTSHHHHHHSCHHHHHH--TTCCH-HHHHHHHT
T ss_pred HHHHHHHhcCHHHHHhCCHHHHHH--ccccH-HHHHHHhh
Confidence 357889999999999999999955 44442 25666643
No 145
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=56.69 E-value=11 Score=27.49 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.3
Q ss_pred CcccHHHHhcCCCCcHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAG 129 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~ 129 (363)
.|.+.++|.+++|||+...+
T Consensus 44 ~P~t~~eL~~i~Gvg~~k~~ 63 (85)
T 2kv2_A 44 LSSDPEVLLQIDGVTEDKLE 63 (85)
T ss_dssp CCSCHHHHHTSSSCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 58999999999999987554
No 146
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=55.56 E-value=13 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.3
Q ss_pred CcccHHHHhcCCCCcHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAG 129 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~ 129 (363)
.|.+.++|.+++|||+....
T Consensus 50 ~P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 50 MPITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp CCCSHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 58999999999999986554
No 147
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=54.84 E-value=2.6 Score=37.50 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=6.3
Q ss_pred HHHHhhCCCcc
Q psy9547 282 EFLSENLPFKV 292 (363)
Q Consensus 282 rEl~Eelgl~v 292 (363)
++...++|+.+
T Consensus 219 ~~~A~~~gikv 229 (241)
T 1vq8_Y 219 EEEAEDAGIRV 229 (241)
T ss_dssp HHHHHHTTCCB
T ss_pred HHHHHHcCCcc
Confidence 55555666654
No 148
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=54.69 E-value=10 Score=26.72 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHH-HhCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHHHHhhHH
Q psy9547 60 KFI-KTYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVIEQ 105 (363)
Q Consensus 60 ~l~-~~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a~~i~~~ 105 (363)
.|. +.|-|.++++.++.++|..+ -|+.- ++.-|++.|+.++..
T Consensus 21 ~L~~~Gf~tve~vA~~~~~eL~~I---~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 21 VLVEEGFSTLEELAYVPMKELLEI---EGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp HHHHTTCCCHHHHHHSCHHHHTTS---TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcCcHHHHHcCCHHHHhhc---cCCCHHHHHHHHHHHHHHHHH
Confidence 344 46889999999999888764 68874 888888888877653
No 149
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=53.87 E-value=7.3 Score=28.21 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=29.8
Q ss_pred HhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHH
Q psy9547 83 WEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 83 ~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~ 133 (363)
+..++++.||.+-.+-|..- . .+..+-.+.++|++++|+|+++.+-|.-
T Consensus 18 Ie~L~LS~Ra~NcLk~agI~-T-v~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 18 IEELDLSVRSYNCLKRAGIN-T-VQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp GGGSCCBHHHHHHHHHTTCC-B-HHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHhCCC-C-HHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 34577777776654422110 0 0011234688999999999999887754
No 150
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=53.66 E-value=7.2 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=16.6
Q ss_pred cHHHHhcCCCCcHHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~ 133 (363)
.++.|.++||||++||..+-.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~ 114 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQ 114 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHH
Confidence 345557999999999998744
No 151
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=53.18 E-value=17 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=33.9
Q ss_pred hccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHH
Q psy9547 84 EGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132 (363)
Q Consensus 84 ~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il 132 (363)
...|+.+ +.++.++++.|.. |..+.+ -.|.+|||||+..+..+-
T Consensus 131 ~~~g~~~-~~~~l~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 131 SANGYLN-ATTAMDLAQMLIQ---GVWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHTTBTT-HHHHHHHHHHHHH---TSCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHh---hcCCCC-CceeCCCCCCHHHHHHHH
Confidence 3567777 8999999999987 555544 468999999998887643
No 152
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=52.84 E-value=2.9 Score=42.28 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=0.0
Q ss_pred cHHHHhcCCCCcHHHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+.++|.+++|||+.+|..|..|
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ----------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHH
Confidence 5677888888888888888765
No 153
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=51.66 E-value=13 Score=28.14 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.8
Q ss_pred CcccHHHHhcCCCCcHHHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAGAL 131 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~~i 131 (363)
.|.+.++|.+|+|||+.-...+
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~y 73 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAML 73 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHHT
T ss_pred CCCCHHHHhcCCCCCHHHHHHH
Confidence 5899999999999999776643
No 154
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=51.63 E-value=20 Score=26.03 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHH
Q psy9547 58 YEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQA 97 (363)
Q Consensus 58 ~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~ 97 (363)
..++.+.|.+++++.+++.+++.. +.++|- .+|..|..
T Consensus 32 A~~Ll~~fgsl~~l~~a~~~eL~~-i~GIG~-~~a~~I~~ 69 (89)
T 1z00_A 32 SQTLLTTFGSLEQLIAASREDLAL-CPGLGP-QKARRLFD 69 (89)
T ss_dssp HHHHHHHTCBHHHHHHCCHHHHHT-STTCCH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHhCCHHHHHh-CCCCCH-HHHHHHHH
Confidence 456778899999999999988865 344442 25666654
No 155
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=50.45 E-value=8.7 Score=31.24 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCccc---HHHHhcCCCCcHHHHHHHHHHh
Q psy9547 109 EVPRD---KKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 109 ~~p~~---~~~L~~lpGIG~~tA~~il~~~ 135 (363)
++|.. .-.|..|.|||+.+|..|+..+
T Consensus 21 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 21 NVDGNIKIVYALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp CBCSSSCTTTTGGGSTTCCHHHHHHHHHHH
T ss_pred cCCCCcchHhhHhhhcCCCHHHHHHHHHHc
Confidence 45543 5678999999999999999875
No 156
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=50.24 E-value=64 Score=22.72 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCC
Q psy9547 40 WISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGG 108 (363)
Q Consensus 40 lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g 108 (363)
|+-..+..-.....+.+|...|.+.=-+.+-|..++. +.|+.+|+ |---|+++.+.+-.+|+-
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~----~~Lr~LGi--~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINN----SMLRTLGL--REGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCH----HHHHHTTC--CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCH----HHHHHcCC--chhhHHHHHHHHHHHhCc
Confidence 5566677778888899999999887778888888998 45566999 577888888888887754
No 157
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.59 E-value=9.6 Score=31.08 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCcc---cHHHHhcCCCCcHHHHHHHHHHh
Q psy9547 108 GEVPR---DKKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 108 g~~p~---~~~~L~~lpGIG~~tA~~il~~~ 135 (363)
-++|. ..-.|..|.|||+.+|..|+..+
T Consensus 13 ~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 43 (148)
T 3j20_O 13 VDLDGNKQLRWALTAIKGIGINFATMVCRVA 43 (148)
T ss_dssp SCEECSSCHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ccCCCCCEehhhhhhccCcCHHHHHHHHHHh
Confidence 34554 36779999999999999999875
No 158
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.19 E-value=11 Score=30.95 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCccc---HHHHhcCCCCcHHHHHHHHHHh
Q psy9547 108 GEVPRD---KKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 108 g~~p~~---~~~L~~lpGIG~~tA~~il~~~ 135 (363)
-++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 18 ~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 18 TNVDGKQKIMFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp TCCCCSSBHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CcCCCCcEeHhhhhhccCcCHHHHHHHHHHc
Confidence 356643 6789999999999999999875
No 159
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=47.68 E-value=34 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHH
Q psy9547 57 YYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQA 97 (363)
Q Consensus 57 ~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~ 97 (363)
...++.+.|.++++|..++.++|..+ .++|- .+|..|..
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~i-~Gig~-~~a~~i~~ 64 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMKV-EGIGE-KIAKEIRR 64 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTTS-TTCCH-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhcC-CCCCH-HHHHHHHH
Confidence 34567788999999999999887552 34442 26666654
No 160
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=47.54 E-value=17 Score=27.41 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.5
Q ss_pred CcccHHHHhcCCCCcHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAG 129 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~ 129 (363)
.|.+.++|.+|+|||+.-..
T Consensus 59 ~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 59 LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp CCCCHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 58999999999999987655
No 161
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=47.54 E-value=11 Score=31.08 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHh
Q psy9547 114 KKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~ 135 (363)
.-.|..|.|||+.+|..|+..+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 6789999999999999999865
No 162
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=45.95 E-value=20 Score=26.21 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.0
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHH
Q psy9547 58 YEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQA 97 (363)
Q Consensus 58 ~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~ 97 (363)
..++.+.|.+++++.+++.++|.+ +.++|- .+|..|..
T Consensus 45 A~~Ll~~fgs~~~l~~as~~eL~~-i~GIG~-~~a~~I~~ 82 (91)
T 2a1j_B 45 SQTLLTTFGSLEQLIAASREDLAL-CPGLGP-QKARRLFD 82 (91)
T ss_dssp HHHHHHHHSSHHHHHSCCHHHHHT-SSSCCS-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHhCCHHHHHh-CCCCCH-HHHHHHHH
Confidence 345678889999999999988865 344443 35666654
No 163
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=45.70 E-value=16 Score=27.16 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=26.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCCccccccchHHHHHhhh
Q psy9547 114 KKQLLSIKGVGDYTAGALASICYNIPTPAVDGNVFRIYGRL 154 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~~~~~~~~vD~~v~Rvl~Rl 154 (363)
+.+|..||+||+.++..+...+..-+.-..+..-.....|+
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL 43 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHH
Confidence 45688999999999998877665544333333333333333
No 164
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=44.69 E-value=14 Score=26.12 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhccCchHHHHHHHH
Q psy9547 58 YEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYSRVRNFQA 97 (363)
Q Consensus 58 ~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~rA~~l~~ 97 (363)
..++.+.|.+++++.+++.++|.++ .++|- .+|..|..
T Consensus 37 A~~Ll~~fgsl~~l~~a~~eeL~~i-~GIG~-~~a~~I~~ 74 (78)
T 1kft_A 37 RQMLLKYMGGLQGLRNASVEEIAKV-PGISQ-GLAEKIFW 74 (78)
T ss_dssp HHHHHHHHSCHHHHHHCCHHHHTTS-SSTTS-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHC-CCCCH-HHHHHHHH
Confidence 3456778899999999999887553 34442 36666654
No 165
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=44.25 E-value=12 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCccc---HHHHhcCCCCcHHHHHHHHHHh
Q psy9547 108 GEVPRD---KKQLLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 108 g~~p~~---~~~L~~lpGIG~~tA~~il~~~ 135 (363)
-++|.+ .-.|..|.|||+.+|..|+.-+
T Consensus 7 ~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 7 VEIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp TCCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred ccCCCCcEeeeehhccccccHHHHHHHHHHc
Confidence 356643 5689999999999999998753
No 166
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=41.50 E-value=17 Score=25.82 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=30.1
Q ss_pred HhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 83 WEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 83 ~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+..++++.||.+-.+-+. |.. .+.-+..+.++|++++|+|+++.+-|...
T Consensus 11 Ie~L~LS~Ra~NcLkrag-I~T-v~dL~~~s~~dLlki~n~G~kSl~EI~~~ 60 (73)
T 1z3e_B 11 IEELDLSVRSYNCLKRAG-INT-VQELANKTEEDMMKVRNLGRKSLEEVKAK 60 (73)
T ss_dssp GGGSCCBHHHHHHHHHTT-CCB-HHHHHTSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcC-CCc-HHHHHcCCHHHHHHcCCCCHHHHHHHHHH
Confidence 345777777766433211 100 00112346899999999999998876543
No 167
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=38.37 E-value=52 Score=30.28 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=32.9
Q ss_pred ccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHH
Q psy9547 85 GLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALA 132 (363)
Q Consensus 85 ~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il 132 (363)
..|+.+=|.++.++++.|.. |..+. ...|++|||||+..+..+-
T Consensus 135 ~~g~~~~~~~~l~L~q~i~q---~~w~~-~~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 135 SNGWLSPALAAMELAQMVTQ---AMWSK-DSYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HTTBHHHHHHHHHHHHHHHH---TCCTT-SCGGGGSTTCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH---hcCCC-CCceecCCCCCHHHHHHHH
Confidence 46766667888999999987 44443 3479999999998877653
No 168
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=36.89 E-value=7.2 Score=34.19 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q psy9547 115 KQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 115 ~~L~~lpGIG~~tA~~il~~ 134 (363)
..|..|||||+++|..++..
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~ 192 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNY 192 (226)
T ss_dssp --------------------
T ss_pred ccccccCCCCHHHHHHHHHH
Confidence 44666777777777776664
No 169
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.50 E-value=14 Score=24.65 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcC
Q psy9547 79 VLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSI 120 (363)
Q Consensus 79 l~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~l 120 (363)
....|+..||+.+.+++ .++.+++|.+...+++|+++
T Consensus 12 ~L~~L~eMGF~D~~~N~-----~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNL-----RLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHTCCCHHHHH-----HHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHH-----HHHHHcCCCHHHHHHHHHhc
Confidence 34556779999776676 34556788888888888764
No 170
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=35.58 E-value=20 Score=31.22 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.9
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcC
Q psy9547 115 KQLLSIKGVGDYTAGALASICYN 137 (363)
Q Consensus 115 ~~L~~lpGIG~~tA~~il~~~~~ 137 (363)
..|..|||||+++|..++.. ||
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~-Fg 189 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH-FG 189 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HC
T ss_pred ccccCCCCcCHHHHHHHHHH-cC
Confidence 45778999999999988874 54
No 171
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=35.22 E-value=17 Score=28.21 Aligned_cols=37 Identities=11% Similarity=0.362 Sum_probs=19.6
Q ss_pred hCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHHHHHHhh
Q psy9547 64 TYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQAGCRQVI 103 (363)
Q Consensus 64 ~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~~a~~i~ 103 (363)
.|-|.++|+.++.++|..+ .|++. +|..|++.|+.++
T Consensus 45 G~~Tve~va~a~~~eL~~i---~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 45 GFHTVEAVAYAPKKELINI---KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCSSGGGBTSSBHHHHHTT---TTCSTTHHHHHHHHHHHHS
T ss_pred CcCcHHHHHhCCHHHHHHc---cCCCHHHHHHHHHHHHHHc
Confidence 3556666666665555443 44442 5555555555543
No 172
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=34.75 E-value=22 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCCc
Q psy9547 114 KKQLLSIKGVGDYTAGALASICYNIP 139 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~~~~~~ 139 (363)
+.+|..||+||+.++..+...+..-+
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~ 28 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTP 28 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCH
Confidence 45688999999999998877665544
No 173
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=34.34 E-value=22 Score=27.39 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.9
Q ss_pred CcccHHHHhcCCCCcHHHHH
Q psy9547 110 VPRDKKQLLSIKGVGDYTAG 129 (363)
Q Consensus 110 ~p~~~~~L~~lpGIG~~tA~ 129 (363)
.|.+.++|.+|+|||+.-..
T Consensus 59 ~P~t~~eL~~I~Gvg~~K~~ 78 (113)
T 2dgz_A 59 RPTTVENVKRIDGVSEGKAA 78 (113)
T ss_dssp CCCSHHHHHHSSSCCTTGGG
T ss_pred CCCCHHHHHhCCCCCHHHHH
Confidence 58999999999999985443
No 174
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=34.18 E-value=8.5 Score=34.09 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred ccHHHHhcCCCCcHHHHHHHHH
Q psy9547 112 RDKKQLLSIKGVGDYTAGALAS 133 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~ 133 (363)
.+.++|.++||||++||+-|..
T Consensus 45 a~~~eL~~v~GIG~ktAe~I~~ 66 (241)
T 1vq8_Y 45 ADQSALADVSGIGNALAARIKA 66 (241)
T ss_dssp ----------------------
T ss_pred CCHHHHHhccCCCHHHHHHHHH
Confidence 3566777778888888777744
No 175
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=33.86 E-value=44 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhccCchH-HHHHHHH
Q psy9547 57 YYEKFIKTYPTIKDFAFDTEDNVLKMWEGLGYYS-RVRNFQA 97 (363)
Q Consensus 57 ~~~~l~~~~pt~~~la~a~~~el~~~~~~lG~~~-rA~~l~~ 97 (363)
...++.+.|+|++++.+++.++|.++ . |... +|+.|.+
T Consensus 174 ~a~~Ll~~fgs~~~l~~a~~e~L~~v-~--GiG~~~a~~i~~ 212 (219)
T 2bgw_A 174 TAERILERFGSLERFFTASKAEISKV-E--GIGEKRAEEIKK 212 (219)
T ss_dssp HHHHHHHHHSSHHHHTTCCHHHHHHS-T--TCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhhC-C--CCCHHHHHHHHH
Confidence 34567889999999999999998663 3 4443 5666654
No 176
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=33.38 E-value=50 Score=29.96 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q psy9547 114 KKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 114 ~~~L~~lpGIG~~tA~~il~~ 134 (363)
...|++||||++..|.+|+..
T Consensus 236 ~~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 236 ARQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHH
Confidence 366899999999999998863
No 177
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=31.94 E-value=28 Score=25.48 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=30.0
Q ss_pred hccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 84 EGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 84 ~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
..++++.||.+-.+-|..- . .+.-+-.+.++|++++|+|+++.+-|.-.
T Consensus 15 ~~L~LSvRa~NcLkragI~-T-v~dL~~~se~dLlki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 15 DDLELTVRSANCLXAEAIH-Y-IGDLVQRTEVELLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp GGGCCCHHHHHHHHHTTCC-B-HHHHHHSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCC-c-HHHHHhCCHHHHhhccccCcccHHHHHHH
Confidence 3477776776643322110 0 00012246889999999999999988654
No 178
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=31.94 E-value=18 Score=32.83 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=12.9
Q ss_pred cCCCCcHHHHHHHHH
Q psy9547 119 SIKGVGDYTAGALAS 133 (363)
Q Consensus 119 ~lpGIG~~tA~~il~ 133 (363)
.+||||++||.-++.
T Consensus 207 GVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 207 GVEGIGAKRGYNIIR 221 (290)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHH
Confidence 389999999988776
No 179
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=31.35 E-value=41 Score=33.56 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHHH
Q psy9547 6 SAKEILAFQESILTWYKQNARQLPWRESNNPYYVWISEVM 45 (363)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~lpw~~~~dp~~~lv~~il 45 (363)
..+++..+++.|.+.++..+. -||+.. .|.-.+..|.
T Consensus 9 ~N~~i~~~l~~~a~~~e~~g~-~~~r~~--ay~~Aa~~i~ 45 (578)
T 2w9m_A 9 SRHRLVHALERTADLLDILGG-EDFKSR--AYRSAARSLE 45 (578)
T ss_dssp CHHHHHHHHHHHHHHHHHC----CCSHH--HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCC-CcccHH--HHHHHHHHHH
Confidence 346778888888888887654 345432 4444444443
No 180
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=28.98 E-value=15 Score=31.47 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=14.6
Q ss_pred CCCCCCCCCCcccChhh
Q psy9547 201 KNPKCKECPLSRFCSAY 217 (363)
Q Consensus 201 ~~P~C~~Cpl~~~C~~~ 217 (363)
.++.|..|++++.|++.
T Consensus 188 ~~~~C~~Cs~~~~C~~~ 204 (206)
T 4ic1_A 188 FNWECKYCIFSVICPAK 204 (206)
T ss_dssp STTSGGGCTTGGGCTTC
T ss_pred CCCCCCCCCCCCcCCCc
Confidence 36899999999999864
No 181
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=28.62 E-value=24 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=20.2
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 113 DKKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 113 ~~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
.-+.+..+||||+..+....--+|++
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~k 41 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDK 41 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccH
Confidence 34567899999999999877756654
No 182
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=27.54 E-value=1.5e+02 Score=29.95 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=33.6
Q ss_pred ccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHhcCC
Q psy9547 85 GLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASICYNI 138 (363)
Q Consensus 85 ~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~~~~ 138 (363)
.+|...-+..+..+.+.|.. | ++.+.-.|++|||||+..|-.+-..++.-
T Consensus 631 ~~~~~~~~~~l~~l~~rl~~---g-v~~e~~~L~qlp~i~~~rar~L~~~g~~s 680 (715)
T 2va8_A 631 ELKLNEHADKLRILNLRVRD---G-IKEELLELVQISGVGRKRARLLYNNGIKE 680 (715)
T ss_dssp HTTCHHHHHHHHHHHHHHHH---T-CCGGGHHHHTSTTCCHHHHHHHHHTTCCS
T ss_pred HhCcHHHHHHHHHHHHHHHc---C-CChhhcchhhCCCCCHHHHHHHHHcCCCC
Confidence 34544334555566666654 3 56677889999999999999876555533
No 183
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=27.05 E-value=78 Score=27.40 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=12.9
Q ss_pred cHHHHhcCCCCcH-HHHHHHHHH
Q psy9547 113 DKKQLLSIKGVGD-YTAGALASI 134 (363)
Q Consensus 113 ~~~~L~~lpGIG~-~tA~~il~~ 134 (363)
+.++|.++ ||+ ++|..|..|
T Consensus 198 s~EeL~~V--IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 198 SLEEIARV--IGSTEIARRVLDI 218 (220)
T ss_dssp CHHHHHHH--HTCHHHHHHHHHH
T ss_pred CHHHHHHH--hChHHHHHHHHHH
Confidence 45666666 777 777766543
No 184
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.52 E-value=26 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.3
Q ss_pred cCCCCcHHHHHHHHHH
Q psy9547 119 SIKGVGDYTAGALASI 134 (363)
Q Consensus 119 ~lpGIG~~tA~~il~~ 134 (363)
.+||||++||--++.-
T Consensus 236 gipGiG~KtA~kll~~ 251 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK 251 (341)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHH
Confidence 4899999999887753
No 185
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=25.90 E-value=1.3e+02 Score=29.90 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=35.8
Q ss_pred HHHHHHhccCch-HHHHHHHHHHHHhhHHhCCCCcccHHH-----HhcCCCCcHHHHHHHHHHh
Q psy9547 78 NVLKMWEGLGYY-SRVRNFQAGCRQVIEQFGGEVPRDKKQ-----LLSIKGVGDYTAGALASIC 135 (363)
Q Consensus 78 el~~~~~~lG~~-~rA~~l~~~a~~i~~~~~g~~p~~~~~-----L~~lpGIG~~tA~~il~~~ 135 (363)
++..+++-.|=- -|++.-.++|+.|.. +...+. +..+ |.+|||||..++..|-.+.
T Consensus 12 ~~a~~~e~~g~~~~r~~aYr~Aa~~l~~-~~~~i~-~~~~~~~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 12 EIGLMSEFLGDNPFRVRAYHQAARTLYD-LDTPIE-EIAEKGKEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CCSCHH-HHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHh-CCcchh-hHhhcchhHHHhCCCCCHHHHHHHHHHH
Confidence 344444444522 378888888888765 222222 2222 8899999999999887764
No 186
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=25.66 E-value=36 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.2
Q ss_pred ccHHHHhcCCCCcHHHHHHHHHHhc
Q psy9547 112 RDKKQLLSIKGVGDYTAGALASICY 136 (363)
Q Consensus 112 ~~~~~L~~lpGIG~~tA~~il~~~~ 136 (363)
.+.++|.+++|||.-+|+-|+..+-
T Consensus 55 a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 55 APKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp SBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHH
Confidence 4699999999999999999988763
No 187
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=25.62 E-value=49 Score=34.38 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHHh--cCCccccccc-----
Q psy9547 73 FDTEDNVLKMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASIC--YNIPTPAVDG----- 145 (363)
Q Consensus 73 ~a~~~el~~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~~--~~~~~~~vD~----- 145 (363)
.|+.++|.. +.|+|. ++|+.|.+. .+. +|.| .++++|.+++|||+++.+.+..|. .|. ..+.|.
T Consensus 504 tAs~~~L~~-v~GiG~-~~A~~Iv~y----R~~-~G~f-~sr~~L~~V~giG~k~~ekl~~FL~i~G~-~~pLD~t~VHP 574 (785)
T 3bzc_A 504 TASAALLAR-ISGLNS-TLAQNIVAH----RDA-NGAF-RTRDELKKVSRLGEKTFEQAAGFLRVMNG-DNPLDASAVHP 574 (785)
T ss_dssp TCCHHHHHT-STTCCH-HHHHHHHHH----HHH-HCCC-SSGGGGGGSTTCCHHHHHHHGGGEECTTS-SCGGGGSSCCG
T ss_pred cCCHHHHhh-cCCCCH-HHHHHHHHH----HHh-cCCC-CCHHHHHhcCCCCHHHHHHhhheEEECCc-ccccccCcCCH
Confidence 356655543 444443 367777652 222 3544 579999999999999999887774 222 234443
Q ss_pred ----hHHHHHhhh
Q psy9547 146 ----NVFRIYGRL 154 (363)
Q Consensus 146 ----~v~Rvl~Rl 154 (363)
-+.+++..+
T Consensus 575 EsY~~a~kil~~~ 587 (785)
T 3bzc_A 575 ETYPLVQRIAADT 587 (785)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 145777766
No 188
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=24.84 E-value=44 Score=25.09 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=29.7
Q ss_pred HhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhcCCCCcHHHHHHHHHH
Q psy9547 83 WEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLSIKGVGDYTAGALASI 134 (363)
Q Consensus 83 ~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~tA~~il~~ 134 (363)
+..++++.||.+-.+-|.. .. .+..+-.+.++|++++|+|+++.+-|.-.
T Consensus 26 Ie~L~LSvRs~NcLkragI-~T-v~dL~~~se~dLlki~n~G~KSl~EI~~~ 75 (98)
T 1coo_A 26 VDDLELTVRSANCLKAEAI-HY-IGDLVQRTEVELLKTPNLGKKSLTEIKDV 75 (98)
T ss_dssp GGGGTCCTTTHHHHHTTTC-CB-HHHHHTSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCC-Cc-HHHHHhCCHHHHHhcCCCCHHHHHHHHHH
Confidence 4456776666554331110 00 00112246899999999999999877654
No 189
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.12 E-value=49 Score=22.98 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHhccCchHHHHHHHHHHHHhhHHhCCCCcccHHHHhc-CCCCcH
Q psy9547 81 KMWEGLGYYSRVRNFQAGCRQVIEQFGGEVPRDKKQLLS-IKGVGD 125 (363)
Q Consensus 81 ~~~~~lG~~~rA~~l~~~a~~i~~~~~g~~p~~~~~L~~-lpGIG~ 125 (363)
..|+..||.++..+++.+ .. -+|++..+++.|.+ .++-||
T Consensus 24 ~qL~~MGF~d~~an~~AL----~a-t~Gnve~Ave~L~~~~~~~~~ 64 (67)
T 2dna_A 24 ECLQAMGFVNYNANLQAL----IA-TDGDTNAAIYKLKSSQGFSGP 64 (67)
T ss_dssp HHHHHHTCCCHHHHHHHH----HH-TTSCHHHHHHHHHHCCSSSCC
T ss_pred HHHHHcCCCcHHHHHHHH----HH-cCCCHHHHHHHHHhCCCccCC
Confidence 445679998765555332 22 35888888888886 555553
No 190
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=20.34 E-value=42 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.4
Q ss_pred cCCCCcHHHHHHHHHH
Q psy9547 119 SIKGVGDYTAGALASI 134 (363)
Q Consensus 119 ~lpGIG~~tA~~il~~ 134 (363)
.+||||++||--++.-
T Consensus 239 Gv~GiG~KtA~kLl~~ 254 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT 254 (336)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 5899999999877763
No 191
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=20.31 E-value=97 Score=25.03 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHHHHhhc---CCCCCCCCCC------ChHHHHHHHHHhhhcchhhHHHHHHHHHHhCCCHHHHhcCC
Q psy9547 5 LSAKEILAFQESILTWYKQN---ARQLPWRESN------NPYYVWISEVMLQQTQVKTVLPYYEKFIKTYPTIKDFAFDT 75 (363)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~---~~~lpw~~~~------dp~~~lv~~il~qqt~~~~v~~~~~~l~~~~pt~~~la~a~ 75 (363)
++..+|+.+-.+|+.+|... +..+|-+... .-++.|+..|=+.+.+...+ .+.-|.++|.+.+
T Consensus 45 LtQqEIRtlE~KLvkyfSkqL~~K~kv~~~~r~~~l~~yP~l~~WLrvVgl~~esiq~i--------~~~~TLe~LLems 116 (149)
T 2lpe_A 45 LTQQEIRTLEAKLVKYICKQQQSKLSVTPSDRTAELNSYPRFSDWLYIFNVRPEVVQEI--------PQELTLDALLEMD 116 (149)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTGGGTSCTTTSCTTGGGCSCSTTTHHHHTCCHHHHTTS--------CTTCSHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhhhcCchHHHHHHHhccCHHHHHHh--------hhhccHHHHHhcC
Confidence 56789999999999999764 2223321100 12556666665555433332 3466999999999
Q ss_pred HHHHHHHHhccCchH-HHHHHHHHH
Q psy9547 76 EDNVLKMWEGLGYYS-RVRNFQAGC 99 (363)
Q Consensus 76 ~~el~~~~~~lG~~~-rA~~l~~~a 99 (363)
+++|...++..|.+. =.+++..+.
T Consensus 117 d~evr~~L~~~ga~eEEcrRL~~Al 141 (149)
T 2lpe_A 117 EAKAKEMLRRWGASTEECSRLQQAL 141 (149)
T ss_dssp HHHHHHHHHTTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999753 344555443
No 192
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=20.11 E-value=43 Score=31.36 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.8
Q ss_pred cCCCCcHHHHHHHHHH
Q psy9547 119 SIKGVGDYTAGALASI 134 (363)
Q Consensus 119 ~lpGIG~~tA~~il~~ 134 (363)
.+||||++||--++.-
T Consensus 255 GVpGIG~KtA~kLl~~ 270 (363)
T 3ory_A 255 GFEGIGPKKALQLVKA 270 (363)
T ss_dssp CSTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6889999999988764
Done!