BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9550
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p
pdb|4E61|B Chain B, Crystal Structure Of The Eb1-Like Motif Of Bim1p
Length = 106
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250
QAEL++ +ET+ EE+ Q K T S + ER KL ++E+ +
Sbjct: 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEI------EREFYFNKLRDIEILVHTTQDLIN 63
Query: 251 EN-QRLKDE---------NGALIRVISKL 269
E + DE GAL+R + K+
Sbjct: 64 EGVYKFNDETITGHGNGNGGALLRFVKKV 92
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246
YE ++AEL++ E +++ +E Q KA NS K E + L++ E+K+ +
Sbjct: 323 YERARAELNQANEDVARNQER--QAKAVQVYNS----RKSELDAANKTLADAIAEIKQFN 376
Query: 247 QFKKE 251
+F +
Sbjct: 377 RFAHD 381
>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
Length = 551
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246
YE ++AEL++ E +++ +E Q KA NS K E + L++ E+K+ +
Sbjct: 323 YERARAELNQANEDVARNQER--QAKAVQVYNS----RKSELDAANKTLADAIAEIKQFN 376
Query: 247 QFKKE 251
+F +
Sbjct: 377 RFAHD 381
>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 176
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246
Y A + L T+E +N++ T + NSLSE E + + + + E+ E+ ELD
Sbjct: 24 YTSHGAHGVAVAADLKSTQEAINKI--TKNLNSLSELEVKNLQRLSGAMDELHNEILELD 81
Query: 247 Q 247
+
Sbjct: 82 E 82
>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 169
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246
Y A + L T+E +N++ T + NSLSE E + + + + E+ E+ ELD
Sbjct: 24 YTSHGAHGVAVAADLKSTQEAINKI--TKNLNSLSELEVKNLQRLSGAMDELHNEILELD 81
Query: 247 Q 247
+
Sbjct: 82 E 82
>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 179
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246
Y A + L T+E +N++ T + NSLSE E + + + + E+ E+ ELD
Sbjct: 24 YTSHGAHGVAVAADLKSTQEAINKI--TKNLNSLSELEVKNLQRLSGAMDELHNEILELD 81
Query: 247 Q 247
+
Sbjct: 82 E 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.298 0.117 0.290
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,864,638
Number of Sequences: 62578
Number of extensions: 133916
Number of successful extensions: 458
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 63
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 51 (24.3 bits)