Query psy9550
Match_columns 271
No_of_seqs 75 out of 77
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 22:26:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0505|consensus 99.7 5E-17 1.1E-21 159.1 4.8 138 128-267 375-527 (527)
2 PF13870 DUF4201: Domain of un 95.4 0.12 2.5E-06 43.6 8.8 30 187-216 44-73 (177)
3 PF08614 ATG16: Autophagy prot 95.4 0.019 4.1E-07 49.4 4.1 69 194-263 90-178 (194)
4 PRK10884 SH3 domain-containing 95.3 0.12 2.7E-06 46.0 8.8 37 180-216 88-124 (206)
5 COG2433 Uncharacterized conser 95.2 0.11 2.4E-06 53.6 9.5 77 184-260 428-512 (652)
6 PF07798 DUF1640: Protein of u 95.0 0.24 5.1E-06 42.3 9.6 34 225-258 119-153 (177)
7 KOG1853|consensus 94.6 0.15 3.3E-06 48.7 8.0 63 199-262 108-176 (333)
8 PF08172 CASP_C: CASP C termin 94.5 0.26 5.6E-06 45.1 8.9 44 219-262 79-126 (248)
9 PRK10884 SH3 domain-containing 94.2 0.17 3.8E-06 45.1 7.1 26 190-215 91-116 (206)
10 PF00038 Filament: Intermediat 94.0 0.54 1.2E-05 42.0 9.7 60 182-242 192-253 (312)
11 PRK01885 greB transcription el 93.8 0.27 5.9E-06 41.9 7.2 61 185-245 10-73 (157)
12 PF03449 GreA_GreB_N: Transcri 93.8 0.41 8.8E-06 36.6 7.5 60 185-244 9-71 (74)
13 PF15188 CCDC-167: Coiled-coil 93.3 0.65 1.4E-05 37.2 8.0 60 191-254 4-68 (85)
14 PF06428 Sec2p: GDP/GTP exchan 93.3 0.37 8.1E-06 39.1 6.8 80 187-269 3-84 (100)
15 PF03962 Mnd1: Mnd1 family; I 93.1 0.51 1.1E-05 41.3 7.9 58 187-244 64-121 (188)
16 KOG0999|consensus 93.0 0.5 1.1E-05 49.2 8.8 83 181-264 46-142 (772)
17 PF03938 OmpH: Outer membrane 93.0 0.82 1.8E-05 37.0 8.5 62 182-246 33-96 (158)
18 PF09738 DUF2051: Double stran 92.9 0.68 1.5E-05 43.8 9.0 68 184-251 95-172 (302)
19 PRK05892 nucleoside diphosphat 92.5 0.68 1.5E-05 39.6 7.7 63 184-246 10-74 (158)
20 TIGR01461 greB transcription e 92.2 0.58 1.2E-05 39.9 6.8 62 185-246 8-72 (156)
21 PRK09039 hypothetical protein; 92.0 0.89 1.9E-05 42.9 8.5 54 184-243 129-182 (343)
22 KOG0977|consensus 91.9 0.73 1.6E-05 47.0 8.3 33 185-217 99-131 (546)
23 PF07106 TBPIP: Tat binding pr 91.9 1.5 3.1E-05 36.8 8.9 58 189-247 76-137 (169)
24 PF04420 CHD5: CHD5-like prote 91.8 0.92 2E-05 38.6 7.7 53 196-250 37-90 (161)
25 KOG0995|consensus 91.8 0.89 1.9E-05 46.8 8.8 86 183-269 226-351 (581)
26 PRK11637 AmiB activator; Provi 91.8 1 2.2E-05 42.8 8.8 20 247-266 114-133 (428)
27 PRK13922 rod shape-determining 91.8 0.24 5.2E-06 44.1 4.3 33 225-257 75-107 (276)
28 PF13851 GAS: Growth-arrest sp 91.4 1.8 3.9E-05 38.2 9.3 35 182-216 45-79 (201)
29 PF09726 Macoilin: Transmembra 91.1 1.3 2.8E-05 46.0 9.4 26 181-206 456-481 (697)
30 TIGR01462 greA transcription e 91.1 0.99 2.2E-05 37.7 7.0 65 185-249 5-72 (151)
31 PF03962 Mnd1: Mnd1 family; I 91.0 2.2 4.7E-05 37.4 9.4 70 184-257 68-149 (188)
32 PF09744 Jnk-SapK_ap_N: JNK_SA 91.0 1.4 3.1E-05 38.2 8.1 25 222-246 85-109 (158)
33 PF10458 Val_tRNA-synt_C: Valy 91.0 2.5 5.4E-05 31.1 8.3 56 190-245 2-65 (66)
34 PF14197 Cep57_CLD_2: Centroso 90.7 1.4 2.9E-05 33.6 6.8 60 190-258 3-62 (69)
35 PF10224 DUF2205: Predicted co 90.6 0.48 1E-05 37.4 4.4 45 222-266 12-60 (80)
36 PF04156 IncA: IncA protein; 90.5 2.3 5E-05 35.6 8.8 86 181-267 84-182 (191)
37 PHA02562 46 endonuclease subun 89.3 3.2 6.9E-05 39.7 9.7 34 182-215 164-197 (562)
38 PF07246 Phlebovirus_NSM: Phle 89.2 2.3 5E-05 40.1 8.5 38 226-263 202-243 (264)
39 KOG0977|consensus 89.2 1.9 4.1E-05 44.1 8.5 33 231-263 146-182 (546)
40 PRK10780 periplasmic chaperone 89.2 4 8.7E-05 34.3 9.2 60 181-243 39-100 (165)
41 PF10226 DUF2216: Uncharacteri 89.1 1.3 2.8E-05 40.3 6.6 25 238-262 50-74 (195)
42 PTZ00419 valyl-tRNA synthetase 89.1 1.6 3.4E-05 46.3 8.2 28 190-217 927-954 (995)
43 PF10211 Ax_dynein_light: Axon 89.1 2.8 6.1E-05 36.7 8.5 15 244-258 171-185 (189)
44 KOG0971|consensus 89.0 1.2 2.7E-05 48.5 7.4 34 228-261 457-490 (1243)
45 PRK13729 conjugal transfer pil 88.9 1.5 3.2E-05 44.2 7.5 22 226-247 97-118 (475)
46 TIGR00219 mreC rod shape-deter 88.9 0.57 1.2E-05 43.1 4.3 17 188-204 69-85 (283)
47 PF06005 DUF904: Protein of un 88.8 2.2 4.9E-05 32.8 6.8 19 244-262 40-58 (72)
48 PF04880 NUDE_C: NUDE protein, 88.7 0.33 7.2E-06 42.6 2.5 33 183-215 15-47 (166)
49 PF07798 DUF1640: Protein of u 88.4 4.2 9.1E-05 34.7 8.9 47 206-253 58-108 (177)
50 PRK06342 transcription elongat 88.3 1.4 3.1E-05 37.9 6.1 52 184-246 33-84 (160)
51 KOG4657|consensus 88.2 4.1 9E-05 38.2 9.4 46 220-268 80-125 (246)
52 COG4026 Uncharacterized protei 88.1 2 4.3E-05 40.7 7.3 59 190-248 147-213 (290)
53 KOG0804|consensus 88.1 3 6.5E-05 42.3 9.0 18 226-243 375-392 (493)
54 PF00038 Filament: Intermediat 88.0 3.9 8.5E-05 36.6 8.9 75 188-265 212-291 (312)
55 PF08614 ATG16: Autophagy prot 88.0 0.71 1.5E-05 39.7 4.1 36 227-262 117-156 (194)
56 PF10473 CENP-F_leu_zip: Leuci 88.0 4.4 9.5E-05 34.8 8.7 29 188-216 48-76 (140)
57 PRK09039 hypothetical protein; 87.9 2.6 5.6E-05 39.9 8.0 58 191-254 45-102 (343)
58 PF00769 ERM: Ezrin/radixin/mo 87.7 2.3 4.9E-05 38.6 7.3 16 227-242 76-91 (246)
59 PF12718 Tropomyosin_1: Tropom 87.7 4 8.7E-05 34.4 8.2 27 230-256 77-104 (143)
60 PF08317 Spc7: Spc7 kinetochor 87.6 4.8 0.0001 37.4 9.4 15 233-247 251-265 (325)
61 PF13863 DUF4200: Domain of un 87.4 8.7 0.00019 30.2 9.6 32 227-258 72-103 (126)
62 COG4026 Uncharacterized protei 87.4 3.9 8.4E-05 38.9 8.7 71 187-258 130-206 (290)
63 PF02388 FemAB: FemAB family; 87.3 2.2 4.8E-05 40.7 7.3 58 194-261 244-301 (406)
64 PHA02562 46 endonuclease subun 87.2 4.3 9.3E-05 38.8 9.1 8 238-245 384-391 (562)
65 PF08172 CASP_C: CASP C termin 86.9 4.5 9.7E-05 37.2 8.7 49 185-256 79-127 (248)
66 TIGR00219 mreC rod shape-deter 86.7 1.8 3.8E-05 40.0 6.0 33 225-257 72-105 (283)
67 TIGR03752 conj_TIGR03752 integ 86.6 3.7 8.1E-05 41.5 8.6 36 182-217 70-105 (472)
68 KOG2391|consensus 86.5 25 0.00054 34.8 13.9 51 194-253 230-280 (365)
69 COG1792 MreC Cell shape-determ 86.2 1 2.3E-05 41.6 4.3 30 227-256 74-103 (284)
70 PF03961 DUF342: Protein of un 86.1 6.1 0.00013 38.1 9.6 66 181-246 330-402 (451)
71 PRK03918 chromosome segregatio 85.9 4.9 0.00011 40.7 9.2 27 182-208 159-185 (880)
72 PF04111 APG6: Autophagy prote 85.6 4.6 0.0001 37.9 8.3 28 187-214 52-79 (314)
73 PRK13729 conjugal transfer pil 85.6 1.8 3.9E-05 43.7 5.9 52 198-258 68-119 (475)
74 PF11559 ADIP: Afadin- and alp 85.6 6 0.00013 32.5 8.1 8 249-256 114-121 (151)
75 PF06156 DUF972: Protein of un 85.5 0.87 1.9E-05 37.2 3.1 26 244-269 30-55 (107)
76 KOG4643|consensus 85.3 4 8.6E-05 45.0 8.6 44 226-269 513-556 (1195)
77 PRK00226 greA transcription el 85.2 4.3 9.4E-05 34.0 7.2 66 184-249 9-77 (157)
78 PF10146 zf-C4H2: Zinc finger- 85.0 6.8 0.00015 35.8 8.8 56 182-243 36-91 (230)
79 PF08657 DASH_Spc34: DASH comp 84.9 3.9 8.5E-05 37.9 7.4 39 179-217 174-212 (259)
80 PRK12704 phosphodiesterase; Pr 84.9 6.3 0.00014 39.5 9.3 29 231-259 112-140 (520)
81 COG1579 Zn-ribbon protein, pos 84.5 8.7 0.00019 35.6 9.4 31 182-212 28-58 (239)
82 PRK14900 valS valyl-tRNA synth 84.5 3.4 7.3E-05 44.6 7.7 70 178-247 835-905 (1052)
83 TIGR03495 phage_LysB phage lys 84.3 7.7 0.00017 33.2 8.3 71 192-262 19-94 (135)
84 PRK05729 valS valyl-tRNA synth 84.2 3 6.5E-05 43.6 7.0 27 191-217 810-836 (874)
85 PRK14127 cell division protein 84.2 3.4 7.4E-05 34.2 6.0 57 186-242 38-101 (109)
86 PF10174 Cast: RIM-binding pro 84.1 3.9 8.5E-05 43.3 7.9 31 187-217 5-35 (775)
87 TIGR01843 type_I_hlyD type I s 84.1 7.3 0.00016 35.3 8.6 12 232-243 245-256 (423)
88 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.1 11 0.00024 30.8 9.0 24 193-216 60-83 (132)
89 PF13094 CENP-Q: CENP-Q, a CEN 83.9 9.2 0.0002 31.9 8.6 62 178-243 17-79 (160)
90 PLN02381 valyl-tRNA synthetase 83.8 4.6 0.0001 43.7 8.4 28 190-217 995-1022(1066)
91 KOG3119|consensus 83.7 37 0.00079 31.4 14.5 62 182-249 191-252 (269)
92 PF09798 LCD1: DNA damage chec 83.7 2.2 4.7E-05 44.5 5.7 37 227-263 16-53 (654)
93 PF12325 TMF_TATA_bd: TATA ele 83.5 8.6 0.00019 32.1 8.2 72 186-257 17-110 (120)
94 PF10205 KLRAQ: Predicted coil 83.5 11 0.00024 31.3 8.6 51 189-245 23-73 (102)
95 COG1792 MreC Cell shape-determ 83.4 2.5 5.4E-05 39.2 5.5 63 181-267 62-124 (284)
96 PRK13922 rod shape-determining 83.3 3.6 7.8E-05 36.7 6.3 29 183-211 67-95 (276)
97 PF07888 CALCOCO1: Calcium bin 83.2 5.4 0.00012 41.0 8.2 31 228-258 215-245 (546)
98 PF04782 DUF632: Protein of un 83.1 7 0.00015 37.2 8.4 71 184-258 95-165 (312)
99 TIGR02168 SMC_prok_B chromosom 83.1 8 0.00017 39.3 9.2 38 179-216 166-203 (1179)
100 PF10226 DUF2216: Uncharacteri 82.9 6.9 0.00015 35.8 7.9 68 187-257 50-136 (195)
101 COG1579 Zn-ribbon protein, pos 82.8 8.1 0.00017 35.8 8.5 30 187-216 47-76 (239)
102 PF05667 DUF812: Protein of un 82.8 8 0.00017 39.7 9.2 65 184-249 320-386 (594)
103 KOG0804|consensus 82.6 6.2 0.00013 40.2 8.2 37 220-256 422-458 (493)
104 PRK11020 hypothetical protein; 82.4 7.2 0.00016 33.3 7.3 50 189-239 2-51 (118)
105 PRK12704 phosphodiesterase; Pr 82.4 8.7 0.00019 38.6 9.1 15 244-258 118-132 (520)
106 COG0216 PrfA Protein chain rel 82.3 8.1 0.00018 38.1 8.7 48 199-246 53-103 (363)
107 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.2 13 0.00029 30.4 8.7 28 189-216 63-90 (132)
108 TIGR01069 mutS2 MutS2 family p 82.2 8.6 0.00019 40.3 9.4 7 67-73 352-358 (771)
109 PF08232 Striatin: Striatin fa 82.1 6.2 0.00013 33.0 6.8 17 228-244 48-64 (134)
110 KOG3564|consensus 81.8 5.5 0.00012 41.1 7.6 68 181-248 31-106 (604)
111 PRK14720 transcript cleavage f 81.7 4.9 0.00011 43.4 7.5 67 183-249 753-822 (906)
112 PF09744 Jnk-SapK_ap_N: JNK_SA 81.5 12 0.00026 32.5 8.6 70 188-263 39-109 (158)
113 PF02183 HALZ: Homeobox associ 81.3 4.6 0.0001 28.6 5.0 37 180-216 4-43 (45)
114 PRK11546 zraP zinc resistance 81.3 10 0.00022 32.9 8.0 59 179-243 48-106 (143)
115 KOG4572|consensus 81.1 5.4 0.00012 43.7 7.5 50 220-269 969-1028(1424)
116 COG4942 Membrane-bound metallo 81.1 9.1 0.0002 38.3 8.7 80 184-263 149-244 (420)
117 KOG4005|consensus 81.1 2.7 6E-05 40.0 4.9 28 233-260 90-121 (292)
118 PF05130 FlgN: FlgN protein; 80.9 16 0.00034 27.9 8.2 23 242-264 90-112 (143)
119 PF15035 Rootletin: Ciliary ro 80.8 22 0.00047 31.4 10.0 30 226-255 148-178 (182)
120 TIGR02894 DNA_bind_RsfA transc 80.6 13 0.00029 33.0 8.7 43 225-267 103-149 (161)
121 PF07888 CALCOCO1: Calcium bin 80.1 12 0.00025 38.6 9.3 23 188-210 160-182 (546)
122 PF09726 Macoilin: Transmembra 80.0 7.7 0.00017 40.5 8.1 28 187-214 420-447 (697)
123 KOG4001|consensus 79.9 9.3 0.0002 35.9 7.8 9 182-190 164-172 (259)
124 PLN02943 aminoacyl-tRNA ligase 79.7 8.8 0.00019 41.0 8.6 54 190-247 887-945 (958)
125 PF10174 Cast: RIM-binding pro 79.6 9.5 0.00021 40.5 8.7 70 187-256 338-423 (775)
126 KOG4343|consensus 79.5 2 4.4E-05 44.5 3.8 24 244-267 310-333 (655)
127 TIGR03185 DNA_S_dndD DNA sulfu 79.5 13 0.00028 37.5 9.3 17 227-243 263-279 (650)
128 PF02403 Seryl_tRNA_N: Seryl-t 79.5 20 0.00044 27.8 8.5 57 188-247 39-95 (108)
129 PF05557 MAD: Mitotic checkpoi 79.3 0.61 1.3E-05 47.3 0.0 37 225-261 287-323 (722)
130 PF14197 Cep57_CLD_2: Centroso 79.2 14 0.0003 28.2 7.3 33 231-263 17-60 (69)
131 PRK10698 phage shock protein P 79.0 18 0.0004 32.4 9.2 63 181-245 102-185 (222)
132 PF03961 DUF342: Protein of un 78.9 9.6 0.00021 36.7 7.9 67 179-246 321-395 (451)
133 KOG0161|consensus 78.5 9.9 0.00021 44.2 9.0 16 228-243 1127-1142(1930)
134 PF04977 DivIC: Septum formati 78.4 10 0.00022 27.2 6.2 29 189-217 21-49 (80)
135 PRK03918 chromosome segregatio 78.4 12 0.00026 38.0 8.7 10 55-64 26-35 (880)
136 TIGR03319 YmdA_YtgF conserved 78.3 15 0.00032 36.9 9.2 9 244-252 119-127 (514)
137 PF14662 CCDC155: Coiled-coil 78.1 16 0.00034 33.4 8.5 42 225-266 94-139 (193)
138 PF09731 Mitofilin: Mitochondr 78.1 20 0.00042 35.4 9.9 28 180-207 246-273 (582)
139 KOG1962|consensus 78.0 9.6 0.00021 35.1 7.3 16 188-203 130-145 (216)
140 PRK14143 heat shock protein Gr 78.0 35 0.00076 31.5 10.9 75 178-255 60-137 (238)
141 PF10211 Ax_dynein_light: Axon 78.0 19 0.0004 31.6 8.8 10 183-192 100-109 (189)
142 PF07334 IFP_35_N: Interferon- 78.0 4.2 9.2E-05 32.1 4.3 28 187-214 2-29 (76)
143 PF05008 V-SNARE: Vesicle tran 77.9 21 0.00046 26.2 7.8 22 225-246 53-74 (79)
144 PF05266 DUF724: Protein of un 77.8 14 0.00031 32.7 8.1 17 226-242 131-147 (190)
145 TIGR03185 DNA_S_dndD DNA sulfu 77.8 17 0.00037 36.6 9.6 25 192-216 391-415 (650)
146 PF04977 DivIC: Septum formati 77.7 12 0.00026 26.8 6.4 19 193-211 18-36 (80)
147 KOG2129|consensus 77.6 13 0.00029 38.0 8.6 30 178-207 246-275 (552)
148 PF00170 bZIP_1: bZIP transcri 77.6 12 0.00026 27.0 6.3 31 229-262 29-59 (64)
149 smart00787 Spc7 Spc7 kinetocho 77.5 19 0.0004 34.2 9.2 19 185-203 179-197 (312)
150 PF07106 TBPIP: Tat binding pr 77.4 6.9 0.00015 32.8 5.8 70 187-259 81-154 (169)
151 PF13864 Enkurin: Calmodulin-b 77.2 7.7 0.00017 30.4 5.6 23 225-247 73-95 (98)
152 PF06409 NPIP: Nuclear pore co 77.0 14 0.0003 35.2 8.1 79 176-257 75-169 (265)
153 KOG1962|consensus 76.9 7.4 0.00016 35.8 6.2 28 227-257 180-207 (216)
154 TIGR02977 phageshock_pspA phag 76.7 25 0.00053 31.0 9.2 33 182-214 103-135 (219)
155 PRK13169 DNA replication intia 76.7 2.6 5.5E-05 34.9 2.9 26 244-269 30-55 (110)
156 KOG0612|consensus 76.7 13 0.00028 41.8 8.9 42 220-262 646-693 (1317)
157 TIGR00606 rad50 rad50. This fa 76.5 15 0.00033 40.1 9.4 60 184-244 835-899 (1311)
158 KOG0981|consensus 76.5 6.5 0.00014 41.5 6.3 64 193-260 637-706 (759)
159 PF14988 DUF4515: Domain of un 76.4 19 0.00042 32.2 8.6 17 247-263 160-176 (206)
160 PF15254 CCDC14: Coiled-coil d 76.4 10 0.00023 40.8 7.9 21 190-210 392-412 (861)
161 PF09730 BicD: Microtubule-ass 76.1 14 0.00029 39.2 8.6 31 186-216 21-51 (717)
162 TIGR03319 YmdA_YtgF conserved 76.0 19 0.00041 36.1 9.3 15 244-258 112-126 (514)
163 PF06810 Phage_GP20: Phage min 75.9 37 0.00081 29.1 9.8 32 182-213 17-48 (155)
164 KOG2010|consensus 75.9 15 0.00033 36.5 8.3 69 184-252 130-208 (405)
165 KOG4001|consensus 75.9 16 0.00035 34.4 8.1 14 244-257 236-249 (259)
166 KOG0612|consensus 75.7 15 0.00032 41.3 9.1 38 220-260 502-539 (1317)
167 COG4942 Membrane-bound metallo 75.7 19 0.00042 36.1 9.1 61 188-249 41-110 (420)
168 PF11932 DUF3450: Protein of u 75.4 29 0.00062 30.9 9.4 24 189-212 46-69 (251)
169 PF06476 DUF1090: Protein of u 75.4 16 0.00035 30.2 7.3 52 185-244 63-114 (115)
170 PF05791 Bacillus_HBL: Bacillu 75.2 36 0.00078 29.5 9.7 32 227-258 143-178 (184)
171 PTZ00266 NIMA-related protein 75.2 1.4E+02 0.003 33.1 16.3 8 258-265 534-541 (1021)
172 PRK00409 recombination and DNA 75.2 18 0.00039 38.0 9.2 7 67-73 357-363 (782)
173 PF09278 MerR-DNA-bind: MerR, 75.1 14 0.00031 25.8 6.1 27 229-255 39-65 (65)
174 PF10805 DUF2730: Protein of u 75.0 22 0.00047 28.6 7.8 56 191-247 34-93 (106)
175 PF13851 GAS: Growth-arrest sp 75.0 18 0.00039 32.0 7.9 38 229-266 146-184 (201)
176 PF13863 DUF4200: Domain of un 74.8 39 0.00085 26.5 9.3 78 187-268 16-99 (126)
177 PRK00409 recombination and DNA 74.8 20 0.00044 37.6 9.5 9 182-190 517-525 (782)
178 KOG2891|consensus 74.7 14 0.00031 36.4 7.8 41 222-262 383-423 (445)
179 PF01920 Prefoldin_2: Prefoldi 74.1 35 0.00076 25.6 9.0 28 187-214 7-34 (106)
180 PF10267 Tmemb_cc2: Predicted 74.0 98 0.0021 30.8 13.6 28 179-206 210-240 (395)
181 KOG4010|consensus 74.0 15 0.00033 33.9 7.3 47 193-252 45-93 (208)
182 cd00632 Prefoldin_beta Prefold 74.0 38 0.00082 26.6 8.7 27 187-213 8-34 (105)
183 PRK04863 mukB cell division pr 73.9 21 0.00045 40.5 9.8 45 226-270 442-490 (1486)
184 PRK11519 tyrosine kinase; Prov 73.7 16 0.00035 37.4 8.3 30 227-256 347-376 (719)
185 KOG0250|consensus 73.7 13 0.00029 41.0 8.1 64 188-251 397-468 (1074)
186 smart00787 Spc7 Spc7 kinetocho 73.6 23 0.0005 33.5 8.8 14 234-247 247-260 (312)
187 PRK09841 cryptic autophosphory 73.5 20 0.00044 36.8 8.9 71 194-265 269-344 (726)
188 PRK00888 ftsB cell division pr 73.5 14 0.0003 29.8 6.3 21 191-211 33-53 (105)
189 PF15294 Leu_zip: Leucine zipp 73.3 11 0.00023 35.9 6.5 76 181-257 128-222 (278)
190 PF04012 PspA_IM30: PspA/IM30 73.1 31 0.00068 29.7 8.8 68 181-249 101-188 (221)
191 KOG0239|consensus 73.1 19 0.00042 37.6 8.7 17 247-267 304-320 (670)
192 PF12999 PRKCSH-like: Glucosid 72.9 20 0.00044 32.0 7.7 22 225-246 152-173 (176)
193 KOG4403|consensus 72.3 13 0.00027 38.3 7.0 55 201-255 254-321 (575)
194 PF09730 BicD: Microtubule-ass 72.3 29 0.00063 36.9 9.9 70 183-253 357-439 (717)
195 PF15070 GOLGA2L5: Putative go 72.0 21 0.00046 36.9 8.7 58 189-246 157-215 (617)
196 TIGR01843 type_I_hlyD type I s 72.0 33 0.00072 31.1 9.1 20 227-246 247-266 (423)
197 PF10828 DUF2570: Protein of u 71.9 35 0.00075 27.4 8.2 56 187-243 27-84 (110)
198 PF12128 DUF3584: Protein of u 71.7 24 0.00051 38.5 9.4 19 228-246 680-698 (1201)
199 PF10186 Atg14: UV radiation r 71.6 49 0.0011 28.8 9.7 23 191-213 69-91 (302)
200 COG1842 PspA Phage shock prote 71.6 29 0.00064 31.6 8.6 62 182-248 103-188 (225)
201 PF09032 Siah-Interact_N: Siah 71.6 14 0.0003 29.3 5.7 47 199-249 3-49 (79)
202 KOG4253|consensus 71.5 24 0.00052 31.9 7.8 43 198-249 50-93 (175)
203 TIGR01730 RND_mfp RND family e 71.5 38 0.00082 29.5 9.0 36 182-217 61-96 (322)
204 PRK02224 chromosome segregatio 71.5 17 0.00038 37.1 7.9 17 230-246 409-425 (880)
205 COG3334 Uncharacterized conser 71.5 28 0.0006 31.7 8.3 13 257-269 119-131 (192)
206 PRK06330 transcript cleavage f 71.3 13 0.00027 39.5 7.0 63 184-246 571-636 (718)
207 TIGR02449 conserved hypothetic 71.2 11 0.00024 28.9 5.0 32 185-216 14-45 (65)
208 KOG2751|consensus 71.1 18 0.0004 36.6 7.8 78 183-260 181-270 (447)
209 KOG3119|consensus 71.0 20 0.00044 33.0 7.6 64 190-269 192-255 (269)
210 PRK05431 seryl-tRNA synthetase 70.7 22 0.00048 34.6 8.1 58 187-247 37-94 (425)
211 PF14916 CCDC92: Coiled-coil d 70.6 6.6 0.00014 29.8 3.6 34 229-262 6-40 (60)
212 KOG3433|consensus 70.5 25 0.00055 32.4 7.9 67 191-260 80-147 (203)
213 PF12072 DUF3552: Domain of un 70.2 45 0.00098 29.2 9.2 9 245-253 122-130 (201)
214 COG2433 Uncharacterized conser 70.2 31 0.00068 36.4 9.4 23 184-206 442-464 (652)
215 KOG0995|consensus 70.2 32 0.0007 35.9 9.5 61 185-245 294-358 (581)
216 COG0782 Uncharacterized conser 70.0 13 0.00028 31.6 5.7 60 186-245 5-67 (151)
217 PF05384 DegS: Sensor protein 70.0 28 0.00062 30.4 7.9 29 185-213 20-48 (159)
218 COG3206 GumC Uncharacterized p 69.9 31 0.00068 33.1 8.9 12 257-268 404-415 (458)
219 PF10473 CENP-F_leu_zip: Leuci 69.8 49 0.0011 28.5 9.1 25 188-212 13-37 (140)
220 PF04201 TPD52: Tumour protein 69.7 22 0.00047 31.7 7.1 25 192-216 29-53 (162)
221 PRK13182 racA polar chromosome 69.5 50 0.0011 29.1 9.3 19 236-254 125-143 (175)
222 PF12777 MT: Microtubule-bindi 69.4 15 0.00033 34.4 6.5 55 193-248 229-285 (344)
223 PF00804 Syntaxin: Syntaxin; 69.2 42 0.0009 24.5 8.2 65 191-258 6-71 (103)
224 COG5244 NIP100 Dynactin comple 69.2 14 0.0003 38.5 6.6 65 188-263 522-587 (669)
225 PF13935 Ead_Ea22: Ead/Ea22-li 69.1 21 0.00044 29.8 6.6 19 189-207 71-89 (139)
226 TIGR00414 serS seryl-tRNA synt 69.1 28 0.00061 33.8 8.5 61 185-247 37-97 (418)
227 PF15456 Uds1: Up-regulated Du 69.1 46 0.001 27.9 8.7 62 192-254 22-109 (124)
228 PF09304 Cortex-I_coil: Cortex 69.0 55 0.0012 27.5 9.0 10 230-239 83-92 (107)
229 PF05911 DUF869: Plant protein 69.0 22 0.00047 38.0 8.2 27 228-264 87-113 (769)
230 PF04111 APG6: Autophagy prote 69.0 48 0.001 31.2 9.7 20 227-246 72-91 (314)
231 PLN02943 aminoacyl-tRNA ligase 69.0 15 0.00034 39.2 7.2 70 178-247 882-952 (958)
232 KOG4643|consensus 68.9 20 0.00044 39.8 8.1 77 182-262 261-341 (1195)
233 PF15290 Syntaphilin: Golgi-lo 68.9 89 0.0019 30.5 11.5 18 200-217 83-100 (305)
234 cd04784 HTH_CadR-PbrR Helix-Tu 68.6 13 0.00029 29.7 5.2 72 185-256 37-109 (127)
235 PF07412 Geminin: Geminin; In 68.6 17 0.00036 33.3 6.4 43 175-217 100-150 (200)
236 PF03978 Borrelia_REV: Borreli 68.6 59 0.0013 29.1 9.6 32 238-269 86-121 (160)
237 PF15372 DUF4600: Domain of un 68.4 35 0.00075 29.4 7.9 59 180-239 3-78 (129)
238 PF13801 Metal_resist: Heavy-m 68.4 31 0.00067 25.4 6.8 31 181-211 48-78 (125)
239 PF11262 Tho2: Transcription f 68.3 21 0.00046 33.1 7.2 62 184-260 26-88 (298)
240 PF05615 THOC7: Tho complex su 67.9 26 0.00057 28.5 6.9 84 181-269 42-127 (139)
241 PF04822 Takusan: Takusan; In 67.8 23 0.0005 28.2 6.3 61 192-252 19-79 (84)
242 KOG0982|consensus 67.8 38 0.00083 34.7 9.2 13 63-75 72-84 (502)
243 PF05700 BCAS2: Breast carcino 67.7 38 0.00082 30.1 8.3 24 193-216 137-160 (221)
244 PRK10636 putative ABC transpor 67.7 45 0.00097 33.7 9.8 24 193-216 564-587 (638)
245 KOG3231|consensus 67.6 16 0.00035 33.4 6.1 22 225-246 28-49 (208)
246 cd04783 HTH_MerR1 Helix-Turn-H 67.2 15 0.00033 29.4 5.3 70 186-256 38-107 (126)
247 PF14362 DUF4407: Domain of un 66.9 69 0.0015 29.0 10.0 32 183-214 133-164 (301)
248 KOG0996|consensus 66.9 26 0.00057 39.4 8.5 34 220-254 944-977 (1293)
249 PF11853 DUF3373: Protein of u 66.7 5.7 0.00012 40.3 3.4 23 193-216 26-48 (489)
250 KOG3215|consensus 66.5 41 0.00088 31.5 8.5 39 226-264 130-171 (222)
251 PF07716 bZIP_2: Basic region 66.3 8.8 0.00019 27.1 3.4 21 243-263 32-52 (54)
252 cd04770 HTH_HMRTR Helix-Turn-H 66.3 16 0.00035 28.8 5.2 71 186-257 38-110 (123)
253 TIGR02169 SMC_prok_A chromosom 66.2 38 0.00082 34.9 9.0 38 179-216 164-201 (1164)
254 PF10482 CtIP_N: Tumour-suppre 66.1 44 0.00096 28.7 8.0 21 242-262 95-115 (120)
255 cd07596 BAR_SNX The Bin/Amphip 66.1 50 0.0011 27.1 8.2 29 189-217 107-135 (218)
256 KOG4378|consensus 66.0 18 0.0004 37.8 6.8 33 225-257 639-671 (673)
257 COG2825 HlpA Outer membrane pr 66.0 65 0.0014 28.1 9.3 30 188-217 47-76 (170)
258 PRK11281 hypothetical protein; 65.9 21 0.00046 39.4 7.6 58 188-245 76-140 (1113)
259 PRK15422 septal ring assembly 65.8 28 0.0006 28.0 6.4 16 246-261 49-64 (79)
260 smart00338 BRLZ basic region l 65.7 15 0.00032 26.5 4.5 22 226-247 40-61 (65)
261 TIGR02231 conserved hypothetic 65.6 52 0.0011 32.2 9.5 22 226-247 145-166 (525)
262 COG3074 Uncharacterized protei 65.4 42 0.00091 27.0 7.3 18 244-261 47-64 (79)
263 PF15619 Lebercilin: Ciliary p 65.4 63 0.0014 28.8 9.2 16 230-245 168-183 (194)
264 PF15254 CCDC14: Coiled-coil d 65.4 27 0.0006 37.8 8.1 31 185-215 462-492 (861)
265 PF07407 Seadorna_VP6: Seadorn 65.3 2.5 5.5E-05 41.8 0.6 21 242-262 31-51 (420)
266 KOG0243|consensus 65.3 34 0.00073 38.0 8.9 22 183-204 402-423 (1041)
267 PLN02320 seryl-tRNA synthetase 64.9 37 0.00081 34.6 8.6 21 227-247 138-158 (502)
268 cd07643 I-BAR_IMD_MIM Inverse 64.9 32 0.00069 32.2 7.5 17 180-196 117-133 (231)
269 PRK14900 valS valyl-tRNA synth 64.9 20 0.00043 38.9 7.1 62 189-257 839-905 (1052)
270 PF06810 Phage_GP20: Phage min 64.8 35 0.00077 29.2 7.3 32 185-216 13-44 (155)
271 KOG3990|consensus 64.8 16 0.00035 35.2 5.7 60 188-249 228-294 (305)
272 PF05615 THOC7: Tho complex su 64.5 77 0.0017 25.8 9.8 48 196-243 43-91 (139)
273 PRK10698 phage shock protein P 64.4 59 0.0013 29.2 9.0 30 227-256 93-126 (222)
274 PF07851 TMPIT: TMPIT-like pro 64.4 29 0.00063 33.7 7.4 35 232-266 67-102 (330)
275 PRK01156 chromosome segregatio 64.2 50 0.0011 34.2 9.6 21 181-201 162-182 (895)
276 PF07412 Geminin: Geminin; In 64.1 12 0.00026 34.2 4.6 39 225-263 114-152 (200)
277 TIGR02047 CadR-PbrR Cd(II)/Pb( 64.1 17 0.00038 29.4 5.1 69 186-254 38-107 (127)
278 PRK09841 cryptic autophosphory 64.0 35 0.00075 35.1 8.4 29 185-213 267-295 (726)
279 PF05622 HOOK: HOOK protein; 63.9 2.3 4.9E-05 43.3 0.0 24 240-263 322-345 (713)
280 PF12001 DUF3496: Domain of un 63.8 17 0.00036 30.5 5.0 35 181-215 32-66 (111)
281 PRK01156 chromosome segregatio 63.7 53 0.0012 34.0 9.6 7 58-64 29-35 (895)
282 PF06632 XRCC4: DNA double-str 63.7 58 0.0013 31.6 9.3 23 225-247 193-215 (342)
283 cd04769 HTH_MerR2 Helix-Turn-H 63.7 20 0.00044 28.4 5.3 74 182-256 34-109 (116)
284 PF14988 DUF4515: Domain of un 63.7 61 0.0013 29.1 8.9 27 219-246 72-98 (206)
285 PF02841 GBP_C: Guanylate-bind 63.6 31 0.00066 31.6 7.2 17 228-244 231-247 (297)
286 PF12004 DUF3498: Domain of un 63.6 2.3 5E-05 43.0 0.0 47 185-234 372-431 (495)
287 COG4372 Uncharacterized protei 63.5 44 0.00096 34.1 8.7 33 226-258 158-194 (499)
288 PF09787 Golgin_A5: Golgin sub 63.4 46 0.001 33.0 8.9 34 182-216 100-133 (511)
289 smart00340 HALZ homeobox assoc 63.4 12 0.00026 27.3 3.5 22 184-205 11-32 (44)
290 TIGR02894 DNA_bind_RsfA transc 63.4 29 0.00063 30.9 6.7 48 189-249 101-148 (161)
291 cd04786 HTH_MerR-like_sg7 Heli 63.4 20 0.00044 29.6 5.4 69 186-255 38-107 (131)
292 PRK00888 ftsB cell division pr 63.3 28 0.00061 28.1 6.1 18 194-211 29-46 (105)
293 PRK03947 prefoldin subunit alp 63.2 37 0.0008 27.6 6.9 32 183-214 11-42 (140)
294 KOG0161|consensus 63.1 41 0.00089 39.5 9.4 21 227-247 1520-1540(1930)
295 PF11932 DUF3450: Protein of u 63.0 61 0.0013 28.9 8.8 27 185-211 56-82 (251)
296 PRK04778 septation ring format 63.0 45 0.00098 33.4 8.8 18 199-216 317-334 (569)
297 PRK11519 tyrosine kinase; Prov 62.9 48 0.001 34.1 9.1 20 196-215 271-290 (719)
298 PF12808 Mto2_bdg: Micro-tubul 62.8 7.6 0.00016 28.7 2.6 15 229-243 25-39 (52)
299 PF15397 DUF4618: Domain of un 62.8 53 0.0011 31.0 8.6 18 220-237 143-160 (258)
300 KOG4797|consensus 62.8 56 0.0012 28.1 8.0 27 185-211 60-86 (123)
301 PF06273 eIF-4B: Plant specifi 62.8 17 0.00038 37.1 5.9 67 177-247 342-417 (492)
302 PF12711 Kinesin-relat_1: Kine 62.7 35 0.00076 27.5 6.5 18 224-241 68-85 (86)
303 PF05266 DUF724: Protein of un 62.7 36 0.00078 30.3 7.2 21 227-247 125-145 (190)
304 PF04508 Pox_A_type_inc: Viral 62.5 9.5 0.00021 24.4 2.6 20 193-212 2-21 (23)
305 PF14257 DUF4349: Domain of un 62.5 37 0.00081 30.2 7.3 48 196-247 136-183 (262)
306 PF12711 Kinesin-relat_1: Kine 62.3 7.9 0.00017 31.1 2.8 19 244-262 45-63 (86)
307 KOG2077|consensus 62.0 47 0.001 35.5 8.8 70 187-261 345-436 (832)
308 PF05911 DUF869: Plant protein 61.5 42 0.00092 35.9 8.6 32 225-256 167-203 (769)
309 PF14282 FlxA: FlxA-like prote 61.5 84 0.0018 25.2 8.6 60 191-253 18-78 (106)
310 TIGR03007 pepcterm_ChnLen poly 61.5 68 0.0015 30.7 9.3 10 259-268 392-401 (498)
311 PF07058 Myosin_HC-like: Myosi 61.4 30 0.00065 34.1 7.0 60 188-247 3-80 (351)
312 PLN02678 seryl-tRNA synthetase 61.3 41 0.0009 33.5 8.1 59 185-246 40-98 (448)
313 PRK14872 rod shape-determining 61.3 12 0.00026 36.2 4.4 24 187-210 59-82 (337)
314 PF13094 CENP-Q: CENP-Q, a CEN 61.3 59 0.0013 27.1 7.9 10 180-189 25-34 (160)
315 PF10481 CENP-F_N: Cenp-F N-te 61.2 27 0.00058 33.9 6.5 29 236-264 53-81 (307)
316 cd07599 BAR_Rvs167p The Bin/Am 61.0 90 0.002 27.1 9.3 32 232-263 148-180 (216)
317 PF06818 Fez1: Fez1; InterPro 61.0 42 0.00091 30.7 7.5 17 193-209 11-27 (202)
318 COG3883 Uncharacterized protei 61.0 90 0.0019 29.7 9.8 36 220-255 149-184 (265)
319 PF05103 DivIVA: DivIVA protei 60.9 2.8 6E-05 33.0 -0.0 26 187-212 34-59 (131)
320 PF12718 Tropomyosin_1: Tropom 60.9 61 0.0013 27.4 8.0 13 231-243 85-97 (143)
321 TIGR01005 eps_transp_fam exopo 60.9 44 0.00096 34.0 8.4 73 186-258 289-384 (754)
322 PF11802 CENP-K: Centromere-as 60.8 61 0.0013 30.9 8.7 19 186-204 86-104 (268)
323 PF10153 DUF2361: Uncharacteri 60.6 17 0.00037 30.3 4.6 21 226-246 59-79 (114)
324 PRK09578 periplasmic multidrug 60.4 74 0.0016 29.6 9.2 43 179-221 95-137 (385)
325 KOG0288|consensus 60.0 30 0.00065 35.2 6.9 6 247-252 85-90 (459)
326 cd04787 HTH_HMRTR_unk Helix-Tu 59.8 23 0.00049 28.8 5.1 73 181-254 34-107 (133)
327 KOG4593|consensus 59.5 50 0.0011 35.3 8.6 72 184-258 243-314 (716)
328 cd04785 HTH_CadR-PbrR-like Hel 59.5 22 0.00048 28.7 4.9 74 182-256 35-109 (126)
329 PF06008 Laminin_I: Laminin Do 59.3 92 0.002 27.9 9.3 66 185-250 167-244 (264)
330 PF04568 IATP: Mitochondrial A 59.3 23 0.00049 29.1 5.0 10 192-201 72-81 (100)
331 cd04775 HTH_Cfa-like Helix-Tur 59.3 29 0.00064 27.0 5.5 63 185-254 37-99 (102)
332 KOG0946|consensus 59.1 69 0.0015 35.3 9.7 79 184-263 677-785 (970)
333 KOG4005|consensus 58.9 16 0.00034 35.0 4.5 31 232-262 86-116 (292)
334 cd04781 HTH_MerR-like_sg6 Heli 58.9 28 0.0006 27.8 5.4 68 186-256 37-104 (120)
335 PF08826 DMPK_coil: DMPK coile 58.8 77 0.0017 24.0 7.8 24 221-245 35-58 (61)
336 PF06005 DUF904: Protein of un 58.7 82 0.0018 24.3 9.1 24 188-211 7-30 (72)
337 KOG0962|consensus 58.5 55 0.0012 37.2 9.1 39 220-259 239-277 (1294)
338 PF09755 DUF2046: Uncharacteri 58.5 91 0.002 30.3 9.6 30 181-210 23-52 (310)
339 KOG3647|consensus 58.4 37 0.0008 33.2 6.9 25 197-221 110-134 (338)
340 TIGR01554 major_cap_HK97 phage 58.4 52 0.0011 30.7 7.8 7 240-246 55-61 (378)
341 PF07028 DUF1319: Protein of u 58.3 99 0.0021 26.7 8.8 53 182-237 50-103 (126)
342 PRK14155 heat shock protein Gr 58.3 52 0.0011 29.9 7.5 58 188-248 16-76 (208)
343 PF09731 Mitofilin: Mitochondr 58.2 75 0.0016 31.4 9.2 12 226-237 311-322 (582)
344 KOG0240|consensus 58.2 44 0.00095 35.1 7.9 20 192-211 421-440 (607)
345 TIGR01808 CM_M_hiGC-arch monof 58.2 64 0.0014 24.4 6.9 18 194-211 2-19 (74)
346 KOG0982|consensus 57.9 43 0.00093 34.4 7.6 27 186-212 291-317 (502)
347 KOG0963|consensus 57.8 35 0.00076 36.0 7.2 79 190-269 119-208 (629)
348 PRK09343 prefoldin subunit bet 57.8 34 0.00074 28.0 5.8 22 228-249 30-51 (121)
349 PF05278 PEARLI-4: Arabidopsis 57.7 33 0.00071 32.6 6.4 9 181-189 121-129 (269)
350 PF05852 DUF848: Gammaherpesvi 57.6 60 0.0013 28.4 7.5 21 230-250 93-114 (146)
351 PF06785 UPF0242: Uncharacteri 57.6 51 0.0011 33.0 7.9 26 187-212 94-119 (401)
352 PF14662 CCDC155: Coiled-coil 57.4 1.1E+02 0.0023 28.2 9.3 39 227-268 82-120 (193)
353 PRK14140 heat shock protein Gr 57.3 86 0.0019 28.2 8.7 61 186-249 38-101 (191)
354 PF04912 Dynamitin: Dynamitin 57.2 17 0.00037 34.5 4.5 54 189-245 91-144 (388)
355 TIGR02209 ftsL_broad cell divi 57.1 5.6 0.00012 29.4 1.1 9 249-257 44-52 (85)
356 KOG2264|consensus 57.0 55 0.0012 35.1 8.4 70 181-253 82-152 (907)
357 PF10498 IFT57: Intra-flagella 56.9 90 0.002 30.3 9.4 70 177-246 212-293 (359)
358 PF15397 DUF4618: Domain of un 56.8 68 0.0015 30.3 8.3 35 181-215 9-44 (258)
359 PRK13169 DNA replication intia 56.8 59 0.0013 27.0 7.0 51 182-239 2-56 (110)
360 PF12128 DUF3584: Protein of u 56.7 81 0.0017 34.6 9.9 63 181-243 420-486 (1201)
361 TIGR01000 bacteriocin_acc bact 56.6 82 0.0018 30.3 9.0 10 182-191 209-218 (457)
362 KOG0999|consensus 56.6 49 0.0011 35.2 7.9 62 191-256 7-70 (772)
363 PRK14151 heat shock protein Gr 56.5 87 0.0019 27.6 8.5 25 222-249 60-84 (176)
364 PF00170 bZIP_1: bZIP transcri 56.2 12 0.00026 27.0 2.6 15 248-262 38-52 (64)
365 PRK14154 heat shock protein Gr 55.9 93 0.002 28.4 8.8 53 193-248 60-115 (208)
366 PRK14144 heat shock protein Gr 55.8 96 0.0021 28.2 8.8 56 190-248 50-108 (199)
367 PF06637 PV-1: PV-1 protein (P 55.8 79 0.0017 32.1 8.9 20 187-206 294-313 (442)
368 KOG2077|consensus 55.6 55 0.0012 35.0 8.1 26 222-247 346-371 (832)
369 PF06785 UPF0242: Uncharacteri 55.5 1E+02 0.0022 31.0 9.5 70 184-253 133-228 (401)
370 TIGR02051 MerR Hg(II)-responsi 55.5 31 0.00066 27.8 5.1 70 186-256 37-106 (124)
371 cd04788 HTH_NolA-AlbR Helix-Tu 55.4 23 0.0005 27.4 4.2 60 185-249 37-96 (96)
372 PF06305 DUF1049: Protein of u 55.3 14 0.00031 26.3 2.9 20 225-244 47-66 (68)
373 TIGR01597 PYST-B Plasmodium yo 55.3 11 0.00024 35.7 2.8 63 175-237 96-173 (255)
374 PF06637 PV-1: PV-1 protein (P 55.2 55 0.0012 33.2 7.8 21 225-245 355-375 (442)
375 cd04782 HTH_BltR Helix-Turn-He 55.1 25 0.00055 27.2 4.4 59 186-248 38-96 (97)
376 PF10146 zf-C4H2: Zinc finger- 54.8 55 0.0012 30.0 7.2 11 248-258 86-96 (230)
377 PF12325 TMF_TATA_bd: TATA ele 54.8 63 0.0014 27.0 7.0 71 191-262 15-87 (120)
378 PF09738 DUF2051: Double stran 54.6 57 0.0012 31.1 7.5 69 185-257 91-161 (302)
379 KOG0577|consensus 54.5 44 0.00095 36.2 7.3 31 222-252 850-888 (948)
380 PRK10722 hypothetical protein; 54.4 23 0.0005 33.4 4.8 37 181-217 165-201 (247)
381 PF13870 DUF4201: Domain of un 54.3 1.3E+02 0.0029 25.3 10.0 18 245-262 121-138 (177)
382 PF12329 TMF_DNA_bd: TATA elem 54.3 70 0.0015 24.4 6.6 20 197-216 3-22 (74)
383 KOG0240|consensus 54.2 45 0.00097 35.1 7.2 13 184-196 424-436 (607)
384 COG3599 DivIVA Cell division i 54.1 86 0.0019 28.6 8.3 30 184-213 36-65 (212)
385 PF05546 She9_MDM33: She9 / Md 54.1 65 0.0014 29.7 7.5 65 181-246 29-119 (207)
386 TIGR03752 conj_TIGR03752 integ 54.1 78 0.0017 32.4 8.7 16 227-242 110-125 (472)
387 KOG0681|consensus 54.0 85 0.0018 33.2 9.1 22 236-257 461-483 (645)
388 PF09592 DUF2031: Protein of u 54.0 12 0.00026 34.9 2.9 86 175-266 95-205 (228)
389 PF14932 HAUS-augmin3: HAUS au 54.0 71 0.0015 29.0 7.8 21 248-268 126-146 (256)
390 TIGR03090 SASP_tlp small, acid 53.8 51 0.0011 26.0 5.8 41 194-236 10-50 (70)
391 COG4985 ABC-type phosphate tra 53.8 63 0.0014 31.1 7.6 63 188-254 167-246 (289)
392 TIGR03495 phage_LysB phage lys 53.7 1.5E+02 0.0032 25.6 9.5 69 189-257 23-96 (135)
393 PF15066 CAGE1: Cancer-associa 53.6 82 0.0018 32.7 8.8 20 230-249 450-469 (527)
394 PF12017 Tnp_P_element: Transp 53.5 68 0.0015 29.5 7.6 37 181-217 7-43 (236)
395 PF01486 K-box: K-box region; 53.5 1E+02 0.0023 23.9 9.7 26 187-212 14-39 (100)
396 PF01920 Prefoldin_2: Prefoldi 53.4 51 0.0011 24.7 5.8 31 228-258 14-44 (106)
397 PF09789 DUF2353: Uncharacteri 53.4 80 0.0017 30.6 8.4 67 186-253 134-227 (319)
398 PF03245 Phage_lysis: Bacterio 53.4 84 0.0018 26.0 7.5 13 244-256 43-55 (125)
399 PF06156 DUF972: Protein of un 53.3 84 0.0018 25.8 7.4 52 182-240 2-57 (107)
400 PF10168 Nup88: Nuclear pore c 53.3 82 0.0018 33.2 9.0 69 188-257 568-653 (717)
401 PF05278 PEARLI-4: Arabidopsis 53.2 1.5E+02 0.0032 28.4 9.9 15 190-204 164-178 (269)
402 PF15070 GOLGA2L5: Putative go 53.1 71 0.0015 33.2 8.4 14 230-243 84-97 (617)
403 PF05529 Bap31: B-cell recepto 53.0 1.1E+02 0.0024 26.1 8.3 18 227-244 155-172 (192)
404 PLN02381 valyl-tRNA synthetase 52.9 45 0.00098 36.4 7.3 34 178-211 990-1023(1066)
405 KOG1666|consensus 52.8 72 0.0016 29.8 7.6 77 181-260 10-96 (220)
406 PHA02554 13 neck protein; Prov 52.8 13 0.00029 36.0 3.1 27 178-204 276-302 (311)
407 PRK10227 DNA-binding transcrip 52.7 37 0.00079 28.2 5.3 69 186-256 38-109 (135)
408 PF11365 DUF3166: Protein of u 52.7 37 0.0008 27.8 5.2 18 228-245 17-34 (96)
409 PF05769 DUF837: Protein of un 52.7 1.1E+02 0.0023 27.1 8.4 80 188-267 73-177 (181)
410 TIGR00606 rad50 rad50. This fa 52.6 90 0.002 34.4 9.5 26 229-254 937-962 (1311)
411 PF09728 Taxilin: Myosin-like 52.6 71 0.0015 30.2 7.8 29 184-212 28-56 (309)
412 PF09728 Taxilin: Myosin-like 52.6 1.1E+02 0.0023 29.0 8.9 63 185-248 237-301 (309)
413 PRK09859 multidrug efflux syst 52.4 1.2E+02 0.0026 28.4 9.1 43 179-221 93-135 (385)
414 PF10079 DUF2317: Uncharacteri 52.4 71 0.0015 32.5 8.2 30 222-251 467-496 (542)
415 KOG4348|consensus 52.3 46 0.001 34.6 6.8 35 223-257 588-622 (627)
416 COG1196 Smc Chromosome segrega 52.2 78 0.0017 34.5 8.9 85 184-269 375-465 (1163)
417 PF06305 DUF1049: Protein of u 52.2 20 0.00042 25.5 3.2 23 189-211 45-67 (68)
418 PF11460 DUF3007: Protein of u 52.2 17 0.00037 30.3 3.2 33 181-215 69-102 (104)
419 KOG0996|consensus 52.1 60 0.0013 36.8 8.1 20 232-251 439-458 (1293)
420 PF13815 Dzip-like_N: Iguana/D 52.1 65 0.0014 26.0 6.5 20 226-245 94-113 (118)
421 KOG4674|consensus 52.1 70 0.0015 37.6 8.8 52 187-239 1309-1366(1822)
422 PRK14872 rod shape-determining 52.1 24 0.00053 34.2 4.7 32 226-257 64-95 (337)
423 KOG0979|consensus 51.8 67 0.0015 35.8 8.3 67 193-259 644-711 (1072)
424 PF05622 HOOK: HOOK protein; 51.7 4.9 0.00011 41.0 0.0 29 227-255 292-320 (713)
425 KOG2996|consensus 51.6 21 0.00046 38.0 4.5 81 185-268 295-388 (865)
426 PF05010 TACC: Transforming ac 51.6 1.5E+02 0.0033 26.9 9.4 21 182-202 108-128 (207)
427 PF15369 KIAA1328: Uncharacter 51.4 67 0.0015 31.5 7.5 26 227-252 34-59 (328)
428 cd04789 HTH_Cfa Helix-Turn-Hel 51.4 48 0.001 25.9 5.5 62 186-254 38-99 (102)
429 PF10234 Cluap1: Clusterin-ass 51.2 1.2E+02 0.0025 28.8 8.9 18 231-248 199-216 (267)
430 PF10779 XhlA: Haemolysin XhlA 51.2 62 0.0013 24.1 5.8 57 201-266 1-57 (71)
431 PF13514 AAA_27: AAA domain 51.1 96 0.0021 33.5 9.3 86 184-269 800-922 (1111)
432 PF07246 Phlebovirus_NSM: Phle 50.9 1E+02 0.0022 29.5 8.5 35 228-262 197-235 (264)
433 KOG0432|consensus 50.8 39 0.00083 37.3 6.3 28 189-216 927-954 (995)
434 PF07058 Myosin_HC-like: Myosi 50.8 91 0.002 30.9 8.3 17 220-237 68-84 (351)
435 KOG3990|consensus 50.8 85 0.0019 30.5 8.0 67 190-270 223-294 (305)
436 PF10187 Nefa_Nip30_N: N-termi 50.7 45 0.00097 27.1 5.4 67 176-243 30-99 (102)
437 PF14723 SSFA2_C: Sperm-specif 50.7 1.4E+02 0.003 27.3 8.9 63 182-244 95-163 (179)
438 TIGR01834 PHA_synth_III_E poly 50.7 52 0.0011 32.0 6.6 20 225-244 288-307 (320)
439 PF07321 YscO: Type III secret 50.6 95 0.0021 26.9 7.6 53 188-240 91-144 (152)
440 TIGR02209 ftsL_broad cell divi 50.5 69 0.0015 23.6 6.0 30 187-216 26-55 (85)
441 KOG4302|consensus 50.5 1.3E+02 0.0028 32.0 9.9 36 181-216 50-85 (660)
442 KOG0964|consensus 50.5 70 0.0015 35.9 8.2 38 177-214 250-287 (1200)
443 KOG0980|consensus 50.5 97 0.0021 34.3 9.2 22 186-207 432-453 (980)
444 TIGR01837 PHA_granule_1 poly(h 50.4 1.2E+02 0.0027 24.8 7.9 22 225-246 95-116 (118)
445 TIGR01010 BexC_CtrB_KpsE polys 50.2 1.3E+02 0.0028 27.9 9.0 82 176-258 198-286 (362)
446 PF06657 Cep57_MT_bd: Centroso 50.2 1.2E+02 0.0026 23.6 7.9 51 184-242 16-66 (79)
447 PF15458 NTR2: Nineteen comple 50.1 63 0.0014 29.6 6.8 43 195-243 211-253 (254)
448 PF05384 DegS: Sensor protein 50.1 1.1E+02 0.0023 26.9 7.9 18 226-243 105-122 (159)
449 KOG2991|consensus 49.9 36 0.00078 33.1 5.4 22 222-243 225-246 (330)
450 TIGR03017 EpsF chain length de 49.9 1.3E+02 0.0029 28.2 9.1 27 229-255 321-347 (444)
451 PRK11448 hsdR type I restricti 49.9 72 0.0016 35.3 8.3 59 188-246 145-204 (1123)
452 PRK09413 IS2 repressor TnpA; R 49.8 12 0.00026 30.0 1.9 18 245-262 80-97 (121)
453 PRK13752 putative transcriptio 49.8 52 0.0011 27.7 5.8 69 185-254 44-112 (144)
454 PF10359 Fmp27_WPPW: RNA pol I 49.7 1.1E+02 0.0025 30.2 9.0 61 194-254 165-228 (475)
455 KOG0976|consensus 49.5 66 0.0014 35.8 7.7 23 181-203 44-66 (1265)
456 KOG4603|consensus 49.4 52 0.0011 30.3 6.1 47 199-258 79-131 (201)
457 PF15035 Rootletin: Ciliary ro 49.4 34 0.00073 30.2 4.8 39 231-269 62-107 (182)
458 CHL00118 atpG ATP synthase CF0 49.3 1.6E+02 0.0034 24.6 9.4 6 246-251 136-141 (156)
459 PF09304 Cortex-I_coil: Cortex 49.1 81 0.0018 26.6 6.7 30 229-258 61-92 (107)
460 PF04799 Fzo_mitofusin: fzo-li 48.9 38 0.00083 30.3 5.1 72 177-249 70-150 (171)
461 PRK14163 heat shock protein Gr 48.7 1.1E+02 0.0023 28.2 8.0 58 188-248 43-103 (214)
462 KOG1937|consensus 48.7 83 0.0018 32.6 8.0 39 225-263 475-515 (521)
463 PF12072 DUF3552: Domain of un 48.6 1.6E+02 0.0035 25.8 8.9 9 207-215 61-69 (201)
464 PF05667 DUF812: Protein of un 48.6 67 0.0015 33.3 7.4 26 183-208 354-379 (594)
465 PF09789 DUF2353: Uncharacteri 48.6 96 0.0021 30.1 8.0 33 181-213 68-100 (319)
466 PRK14147 heat shock protein Gr 48.5 1.2E+02 0.0026 26.6 8.1 23 193-215 26-48 (172)
467 KOG3859|consensus 48.3 1.7E+02 0.0036 29.3 9.7 33 220-252 371-403 (406)
468 KOG2129|consensus 48.3 83 0.0018 32.5 7.9 12 60-71 28-39 (552)
469 KOG0971|consensus 48.2 61 0.0013 36.3 7.3 22 185-206 290-311 (1243)
470 smart00338 BRLZ basic region l 48.2 1E+02 0.0022 22.1 7.9 31 229-259 29-63 (65)
471 KOG0964|consensus 48.1 79 0.0017 35.5 8.1 40 225-264 754-806 (1200)
472 COG5374 Uncharacterized conser 48.1 67 0.0015 29.5 6.6 65 182-252 119-183 (192)
473 PRK14162 heat shock protein Gr 48.1 1.2E+02 0.0026 27.3 8.1 53 193-248 47-102 (194)
474 KOG4571|consensus 48.1 20 0.00042 34.6 3.4 45 225-269 231-281 (294)
475 TIGR02338 gimC_beta prefoldin, 47.9 51 0.0011 26.2 5.2 60 193-265 4-63 (110)
476 PRK09343 prefoldin subunit bet 47.7 1.6E+02 0.0034 24.2 9.2 18 230-247 75-92 (121)
477 PRK09514 zntR zinc-responsive 47.7 49 0.0011 27.4 5.3 71 186-257 39-112 (140)
478 PF05557 MAD: Mitotic checkpoi 47.6 6.2 0.00013 40.3 0.0 39 229-267 260-298 (722)
479 TIGR03007 pepcterm_ChnLen poly 47.6 1.1E+02 0.0025 29.3 8.4 32 227-258 332-363 (498)
480 cd01107 HTH_BmrR Helix-Turn-He 47.6 76 0.0017 24.9 6.1 66 186-255 39-104 (108)
481 TIGR02473 flagell_FliJ flagell 47.5 1.4E+02 0.003 23.5 8.9 34 182-215 65-98 (141)
482 PF01166 TSC22: TSC-22/dip/bun 47.4 11 0.00024 28.8 1.4 29 226-257 14-42 (59)
483 PF05529 Bap31: B-cell recepto 47.4 51 0.0011 28.2 5.5 20 190-209 123-142 (192)
484 PRK14161 heat shock protein Gr 47.3 1.4E+02 0.003 26.5 8.3 61 185-248 19-82 (178)
485 PF07407 Seadorna_VP6: Seadorn 46.8 72 0.0016 32.0 7.0 47 189-248 36-84 (420)
486 PRK05689 fliJ flagellar biosyn 46.8 1.6E+02 0.0034 23.9 9.1 65 182-248 68-137 (147)
487 PF09325 Vps5: Vps5 C terminal 46.7 1.8E+02 0.0039 24.7 8.9 70 189-258 125-203 (236)
488 TIGR01010 BexC_CtrB_KpsE polys 46.7 2E+02 0.0042 26.7 9.6 82 187-269 165-251 (362)
489 COG0419 SbcC ATPase involved i 46.7 1.1E+02 0.0024 32.3 8.8 83 187-269 310-408 (908)
490 PRK14139 heat shock protein Gr 46.6 1.3E+02 0.0028 26.9 8.1 59 188-249 35-96 (185)
491 TIGR01000 bacteriocin_acc bact 46.6 1.3E+02 0.0028 29.1 8.6 71 183-262 138-211 (457)
492 PF01763 Herpes_UL6: Herpesvir 46.6 90 0.002 32.5 8.0 51 182-247 355-405 (557)
493 COG3879 Uncharacterized protei 46.6 1.1E+02 0.0024 28.9 7.9 62 177-242 44-105 (247)
494 PF00769 ERM: Ezrin/radixin/mo 46.4 1.3E+02 0.0028 27.5 8.2 72 185-258 36-111 (246)
495 PF01576 Myosin_tail_1: Myosin 46.3 6.6 0.00014 41.5 0.0 66 181-247 415-482 (859)
496 PF07200 Mod_r: Modifier of ru 46.2 1.5E+02 0.0033 24.1 7.9 60 182-247 31-90 (150)
497 KOG0962|consensus 46.2 90 0.002 35.6 8.4 84 187-270 263-352 (1294)
498 PF10779 XhlA: Haemolysin XhlA 46.1 1.2E+02 0.0027 22.5 7.5 47 188-247 2-48 (71)
499 TIGR02043 ZntR Zn(II)-responsi 46.0 55 0.0012 26.7 5.3 73 185-257 38-112 (131)
500 COG3551 Uncharacterized protei 46.0 74 0.0016 31.8 7.0 56 187-255 311-366 (402)
No 1
>KOG0505|consensus
Probab=99.66 E-value=5e-17 Score=159.11 Aligned_cols=138 Identities=33% Similarity=0.403 Sum_probs=103.0
Q ss_pred cccCCCcccccccccCCCCCCccCCCCCCcccccccccCCC---CCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9550 128 MSRSGSTTSLNSLRSEAPSEGYESGGDNLSTSRSRVNSESG---GSSRKLPNENGELDYKKLYEESQAELSRLRETLSKT 204 (271)
Q Consensus 128 ~SrS~St~sL~s~rs~t~se~y~Sg~drts~~~sr~~s~as---~~~~~~~~e~~~~DYKkLYE~~k~ENErLk~~L~e~ 204 (271)
.+|=.+-...+|....+..+.-+-+ .++..+-.|++...+ .+.+...+++-..||+++||.+..|+.||+.+|++.
T Consensus 375 ~~r~~s~~~~~P~~~~~~~~~~~a~-~~r~~~~~~l~t~~s~~~~~~~~~~e~~~n~e~~~~~e~~l~~~qr~~~kl~~~ 453 (527)
T KOG0505|consen 375 TLRDPSGGLSNPATRTTAPDRSGAG-PLREPRKKRLSTLVSYQEEPQRATTEEDLNHEYEKESERALKESQRLSAKLQSA 453 (527)
T ss_pred ccCCCCcccCCCceeccCCCCCCCc-cccchhhcccccccccccccccCCCcccccccccchhhhhhhhhhhhhhccccc
Confidence 3333333334555444443333322 222233444443333 112334567778999999999999999999999999
Q ss_pred HHHHHHHHHHhhh------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhh
Q psy9550 205 EEELNQVKATYSK------------NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 205 ~~El~qlk~~LEk------------~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVIS 267 (271)
+.++++++..|++ .+++|+|++|+|+|||||+|||+|+|.|.+|+ +||+||+||+||||||+
T Consensus 454 ~~e~t~~~s~~~~~a~~~~e~~a~~~~~~e~e~~errslerk~s~~e~e~k~l~~l~-~n~~l~~en~al~rvi~ 527 (527)
T KOG0505|consen 454 PLESTDLGSKLLRVAQQSQERTADRSSLLETEPRERRSLERKMSELEEELKLLKSLR-PNQRLKEENHALCRVIS 527 (527)
T ss_pred chhhhhhhhhhhhccccccccccccccccccCcccccchhhHHHHHhcccchhhhcc-hhhhhhhhcCcceeecC
Confidence 9999999877652 36889999999999999999999999999999 99999999999999996
No 2
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.44 E-value=0.12 Score=43.62 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
||+++.||..|..+|++-..||..+|...-
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~ 73 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIG 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999986543
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.43 E-value=0.019 Score=49.36 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELDQF------------------KKENQ 253 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~~L------------------RadNQ 253 (271)
+..|..+|-++..++.+++..+. ...+.++ ..|...|+.+|..++++|+++.++ ...++
T Consensus 90 ~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 90 KGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp ------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333 2245555 668888888888888888765432 23446
Q ss_pred hhcccccchh
Q psy9550 254 RLKDENGALI 263 (271)
Q Consensus 254 RLKDENgALI 263 (271)
+|++||.-||
T Consensus 169 ~l~~En~~Lv 178 (194)
T PF08614_consen 169 KLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.26 E-value=0.12 Score=46.05 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+--+...+++.+|.+.|+.+|.+++.+..+...+++
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~ 124 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ 124 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455667788888888888888888888777766665
No 5
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.11 Score=53.63 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhh
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKN----SLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRL 255 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~----SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRL 255 (271)
.+.-|....||..|+.+|++++.++..|+.+|++. -......+|-++++++|..|+.+|. ..+.|+.+..+|
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888889999999999888888888732 2444557788889999988776664 677888887777
Q ss_pred ccccc
Q psy9550 256 KDENG 260 (271)
Q Consensus 256 KDENg 260 (271)
++=++
T Consensus 508 ~k~~~ 512 (652)
T COG2433 508 RKMRK 512 (652)
T ss_pred HHHHh
Confidence 75444
No 6
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.05 E-value=0.24 Score=42.29 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccc
Q psy9550 225 KRERRTMERKLSEMEVELK-ELDQFKKENQRLKDE 258 (271)
Q Consensus 225 krERRaLERKiSEmEEELK-~L~~LRadNQRLKDE 258 (271)
+.|...++.||.|+...+. .+.+||++.+.+|-+
T Consensus 119 r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 119 REEQAKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999998887 789999999998866
No 7
>KOG1853|consensus
Probab=94.63 E-value=0.15 Score=48.70 Aligned_cols=63 Identities=37% Similarity=0.437 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 199 ETLSKTEEELNQVKATYSKN------SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~------SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
++|++--++|.|....||++ ++.++|.+=.+|+|| ++=||-||-+-+-|-..-||||||-.-|
T Consensus 108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIEr-nAfLESELdEke~llesvqRLkdEardl 176 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIER-NAFLESELDEKEVLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455532 466777777778875 6779999999999999999999996654
No 8
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=94.49 E-value=0.26 Score=45.13 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccch
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRLKDENgAL 262 (271)
+|+.+=..-|.-.-.|..|||+|+. ++.+||.|.+.||..|-.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666767788889999999999997 5677888888888888776
No 9
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.22 E-value=0.17 Score=45.09 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
++....+|+.+|++++.++++++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444555555555555555554443
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.97 E-value=0.54 Score=41.96 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEEL 242 (271)
.|+.-++++.....+-...+..+..|+..++..+.. .-+..+ +....+||+.|.++|.++
T Consensus 192 ~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l-~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 192 WYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESL-RAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcc-ccchhhhhhhHHHHHHHH
Confidence 344444444444444444444444445444444331 112222 334566666666655444
No 11
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=93.84 E-value=0.27 Score=41.87 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 185 kLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
.=|+++++|.+.|+. +..+..+++++++.+ |.-++=-..-+.+.+.+|+||.+||.+|+..
T Consensus 10 ~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A 73 (157)
T PRK01885 10 EGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLENL 73 (157)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 457777888888876 677777778877654 2233333445889999999999999999743
No 12
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=93.82 E-value=0.41 Score=36.62 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 185 kLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
.=|+++++|.+.|+. +..+..+++..++.. |.-++=-..-+.+.+.+|.||.+||..|..
T Consensus 9 ~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 9 EGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347778888888887 667788888888753 333443344488999999999999998864
No 13
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=93.29 E-value=0.65 Score=37.16 Aligned_cols=60 Identities=32% Similarity=0.478 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSE-----QEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE-----~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
..|.++|.++|..+...|..+...|.+.-|++ +| .|..++-.++...|+|||. ||.||++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE-~E~~~l~~~l~~~E~eL~~---LrkENrK 68 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE-KELNELKEKLENNEKELKL---LRKENRK 68 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-HHHHHHHHHhhccHHHHHH---HHHhhhh
Confidence 34566666666666666666655555444442 22 4555555566666666554 4557776
No 14
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=93.29 E-value=0.37 Score=39.09 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATY-S-KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~L-E-k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIR 264 (271)
+.++....+++......++.||-+|-+.| + -+-|-..+++|+.++|.|...|+++|+... ...+.|.++=.+|=.
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~---~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKE---ALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC---HCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34566677777777778888888777665 3 345556789999999999999999887643 344555555555656
Q ss_pred hhhcc
Q psy9550 265 VISKL 269 (271)
Q Consensus 265 VISKL 269 (271)
||.+|
T Consensus 80 v~~~~ 84 (100)
T PF06428_consen 80 VMESM 84 (100)
T ss_dssp CTTT-
T ss_pred HHHHc
Confidence 66554
No 15
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=93.07 E-value=0.51 Score=41.27 Aligned_cols=58 Identities=22% Similarity=0.431 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
.-..+.+.++|+.++++++.++.+++..|+.....--+..||.++-.++.+|+++++.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKE 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777763321112224666666666666655543
No 16
>KOG0999|consensus
Probab=93.04 E-value=0.5 Score=49.21 Aligned_cols=83 Identities=35% Similarity=0.423 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------chh-HHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN---------SLS-EQEKRERRTMERKLSEMEVELKEL----D 246 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~---------SLl-E~EkrERRaLERKiSEmEEELK~L----~ 246 (271)
-|.|+-|++..+|-+-+|.+|+.+++-+.+.+.+-.+. +|+ |.-.+|- -+-+||.+||-|||++ .
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~-~yl~kI~eleneLKq~r~el~ 124 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEE-YYLQKILELENELKQLRQELT 124 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666655443332 232 3333332 3568999999999964 4
Q ss_pred HHHHhhhhhcccccchhh
Q psy9550 247 QFKKENQRLKDENGALIR 264 (271)
Q Consensus 247 ~LRadNQRLKDENgALIR 264 (271)
..+.||.||-.+|.-||+
T Consensus 125 ~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 125 NVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 556666666555544443
No 17
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=92.99 E-value=0.82 Score=37.00 Aligned_cols=62 Identities=24% Similarity=0.401 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.+|.+-++...+.+.++.+|+..+.++..+..+|++. .|++- ++.++++.+.+++.+|+...
T Consensus 33 ~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~---~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 33 AGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEE---ERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677777777777777777777643 45533 55566777777777777543
No 18
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.91 E-value=0.68 Score=43.78 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 184 KKLYEESQAELS---------RLRETLSKTEEELNQVKATYS-KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 184 KkLYE~~k~ENE---------rLk~~L~e~~~El~qlk~~LE-k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
|+|..-++-+|| -||.+|.++++.+++++.+++ |..-+|..|+....|...+.+|.++|++.++|=++
T Consensus 95 kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 95 KAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554 488999999999999988765 55556888999999999999999999998887643
No 19
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=92.53 E-value=0.68 Score=39.57 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.-|+++++|.+.|+.+..+..+++.+++.. |.-++--..-+++.+.+|+||.+||.-|....
T Consensus 10 ~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 10 PAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCE
Confidence 3457778888888887666666777777654 33344344558889999999999999988443
No 20
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=92.17 E-value=0.58 Score=39.86 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLR-ETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 185 kLYE~~k~ENErLk-~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.=|+++++|.+.|+ .+..+..+++++++..=+ -++--..-+.+.+.+|+||.+|+..|+.+.
T Consensus 8 ~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ 72 (156)
T TIGR01461 8 EGYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLK 72 (156)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 34777888888887 467788888888775533 334334558889999999999999998543
No 21
>PRK09039 hypothetical protein; Validated
Probab=91.99 E-value=0.89 Score=42.94 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
|.+|.+...+..+|+.+|..+..+++.+..+|+ ++|.++ +..+.+|.+|+.+|.
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----~ae~~~-~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALD-----ASEKRD-RESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHHHH
Confidence 456666666666666666666666666655443 343333 445555555554443
No 22
>KOG0977|consensus
Probab=91.90 E-value=0.73 Score=47.03 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
++-++...+..++..++..++.|+.+++..+++
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444456666777777777788888777664
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.89 E-value=1.5 Score=36.83 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSK----NSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk----~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+...+...|+.+|.+++.++..++.+|.. ++..++ ..+-..|+.++.+|++.|..|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888888888777652 234455 45566677777777777666554
No 24
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=91.82 E-value=0.92 Score=38.58 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 196 RLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
+.-.+.++++.|+.+++.++... +..|.-|-= .|+||+..+++||+.+.+-..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwa--Kl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWA--KLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556665555543 344443332 389999999999998776554
No 25
>KOG0995|consensus
Probab=91.81 E-value=0.89 Score=46.80 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhh------hcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKA-------------TYS------KNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~-------------~LE------k~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
+++.|...--+.+.|+.+..++..++++++. .|+ ++.+..+ +--+++|+.+|+.|.+|++
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~-~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQM-KSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 3456665555667777766666666665431 122 2346666 3446777777777766654
Q ss_pred ----HHHHHHHhhhhhc-----------------ccccchhhhhhcc
Q psy9550 244 ----ELDQFKKENQRLK-----------------DENGALIRVISKL 269 (271)
Q Consensus 244 ----~L~~LRadNQRLK-----------------DENgALIRVISKL 269 (271)
+++.|+++|.+|| .|+-+|-|+|.|+
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776665555 6777788877765
No 26
>PRK11637 AmiB activator; Provisional
Probab=91.80 E-value=1 Score=42.78 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=9.1
Q ss_pred HHHHhhhhhcccccchhhhh
Q psy9550 247 QFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 247 ~LRadNQRLKDENgALIRVI 266 (271)
+++++...++++=+.+||.+
T Consensus 114 ~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 114 KLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 27
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.76 E-value=0.24 Score=44.09 Aligned_cols=33 Identities=36% Similarity=0.698 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
+.|.+.|++++.+|+.++.++.+|++||++||+
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668889999999999999999999999999986
No 28
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.37 E-value=1.8 Score=38.21 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
..+++..+..+||.+|..-|+.++.++.+++.+|.
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999999999988775
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.15 E-value=1.3 Score=46.01 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEE 206 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~ 206 (271)
.--|--..+.++|||.|+.+|..+..
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677788888777655543
No 30
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=91.08 E-value=0.99 Score=37.70 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 185 kLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
.-|+++++|.+.|+. +.-+.-.++.+++.. |--++--..-+.+.+.+|+||.+|+++|....-+.
T Consensus 5 ~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~iv~ 72 (151)
T TIGR01462 5 EGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQVID 72 (151)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 346677778888874 456666666666543 22233334448888899999999999999766653
No 31
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.03 E-value=2.2 Score=37.43 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHh
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS----KNSLSEQEKRERRTMERKLSEMEVELK--------ELDQFKKE 251 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE----k~SLlE~EkrERRaLERKiSEmEEELK--------~L~~LRad 251 (271)
+...+++..+++.++.++.+++.++..++..-+ |..++ .+...|+.++.+|+.||+ .+++++.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l----~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELL----EELEELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466788899999999999999999998865432 33332 245567777888887777 35666777
Q ss_pred hhhhcc
Q psy9550 252 NQRLKD 257 (271)
Q Consensus 252 NQRLKD 257 (271)
.+.+|+
T Consensus 144 ~~~~~~ 149 (188)
T PF03962_consen 144 IKIAKE 149 (188)
T ss_pred HHHHHH
Confidence 766665
No 32
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.98 E-value=1.4 Score=38.16 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.-+.|++.|..+|..||++.|.|.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446788889999999999998887
No 33
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=90.96 E-value=2.5 Score=31.05 Aligned_cols=56 Identities=29% Similarity=0.519 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSKN--------SLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk~--------SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
...|.+||..+|..++.++..+...|... .+-+-|+.....++.++.-|++.|+.|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999998887632 244554554445555555555555544
No 34
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.69 E-value=1.4 Score=33.63 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
+.+++..|+..|+-+..++.-....+. . + .+||....++|.+.=+ ...+|+++|..|+.|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k--~---L-~~ERd~~~~~l~~a~~---e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENK--R---L-RRERDSAERQLGDAYE---ENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H---H-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 355666677777666665554422221 1 1 4466555555554322 234455555555544
No 35
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.55 E-value=0.48 Score=37.35 Aligned_cols=45 Identities=31% Similarity=0.511 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhcccccchhhhh
Q psy9550 222 EQEKRERRTMERKLSEMEVELKEL----DQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L----~~LRadNQRLKDENgALIRVI 266 (271)
.+++.+|..|.++|-+|++.|..| +..|.||.+|+.||..|==-|
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888887744 678899999999998875444
No 36
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.50 E-value=2.3 Score=35.64 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------chhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN---------SLSEQEKRERRTMERKLSEME----VELKELDQ 247 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~---------SLlE~EkrERRaLERKiSEmE----EELK~L~~ 247 (271)
.+.++...+...|.+.+.+.+.+.+.++.+++...... .+..+ +.+-..+++.+.+++ ++...++.
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~e~~~l~~~~~~~~~~~~~ 162 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSL-DESIKELEKEIRELQKELQDSREEVQE 162 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777776666665443210 11111 223333333343333 22223335
Q ss_pred HHHhhhhhcccccchhhhhh
Q psy9550 248 FKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 248 LRadNQRLKDENgALIRVIS 267 (271)
++.+.+++.++-.+|+..|.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.33 E-value=3.2 Score=39.68 Aligned_cols=34 Identities=3% Similarity=0.224 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
-|+++.+..+.....++.++++++.++.++..++
T Consensus 164 ~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 164 VLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555554443
No 38
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=89.23 E-value=2.3 Score=40.13 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccchh
Q psy9550 226 RERRTMERKLSEMEVELK----ELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 226 rERRaLERKiSEmEEELK----~L~~LRadNQRLKDENgALI 263 (271)
..-+.|+.+.+.+.++.+ +|.+.|.++++|+.+++..+
T Consensus 202 ~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~ 243 (264)
T PF07246_consen 202 ILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDFT 243 (264)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 333445555554555555 45566788999998887753
No 39
>KOG0977|consensus
Probab=89.20 E-value=1.9 Score=44.14 Aligned_cols=33 Identities=39% Similarity=0.540 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhhhhhcccccchh
Q psy9550 231 MERKLSEMEVELKEL----DQFKKENQRLKDENGALI 263 (271)
Q Consensus 231 LERKiSEmEEELK~L----~~LRadNQRLKDENgALI 263 (271)
++-+|+++|-|+..+ ..|..|..+||.||+-|.
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344455555554433 233344555555555443
No 40
>PRK10780 periplasmic chaperone; Provisional
Probab=89.19 E-value=4 Score=34.32 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
..+|++=.++..+....+.+|+..+.++......+++ +.|++. ++...++.|..++.++.
T Consensus 39 p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~---~~~~~~~el~~~~~~~q 100 (165)
T PRK10780 39 PQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGS---DRTKLEKDVMAQRQTFS 100 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH---HHHHHHHHHHHHHHHHH
Confidence 3445555566666666666677666666666666654 356655 34555555555555544
No 41
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=89.13 E-value=1.3 Score=40.32 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccccch
Q psy9550 238 MEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 238 mEEELK~L~~LRadNQRLKDENgAL 262 (271)
|+..|-++..||..||||+|||--|
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777888888888887655
No 42
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=89.10 E-value=1.6 Score=46.30 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
...|.+||..+|++++.|+..++..|..
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N 954 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISI 954 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3467788889999999999888887763
No 43
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.06 E-value=2.8 Score=36.67 Aligned_cols=15 Identities=53% Similarity=0.782 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhhccc
Q psy9550 244 ELDQFKKENQRLKDE 258 (271)
Q Consensus 244 ~L~~LRadNQRLKDE 258 (271)
+++.||..|+.||++
T Consensus 171 ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 171 EIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455688888888864
No 44
>KOG0971|consensus
Probab=88.99 E-value=1.2 Score=48.48 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRLKDENGA 261 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRLKDENgA 261 (271)
+-.||.|+-.|||++-+|+.|+.-|+.|-+-|.-
T Consensus 457 nlnlEekVklLeetv~dlEalee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 457 NLNLEEKVKLLEETVGDLEALEEMNEQLQESNRE 490 (1243)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999988888877777665543
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.94 E-value=1.5 Score=44.24 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~ 247 (271)
+.+..+|+||.+||.|++.|.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 4556778899999988887743
No 46
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.89 E-value=0.57 Score=43.11 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKT 204 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~ 204 (271)
.++++||++||+++.++
T Consensus 69 ~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 69 NNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666555444
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.79 E-value=2.2 Score=32.75 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhcccccch
Q psy9550 244 ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgAL 262 (271)
.-..|+.+|++||+|-.|.
T Consensus 40 e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677788888776554
No 48
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=88.67 E-value=0.33 Score=42.64 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
-..|.|.+.+|.|.|+.++|.+.+|+.+||.+|
T Consensus 15 RnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 15 RNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHCH--------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998887
No 49
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.36 E-value=4.2 Score=34.75 Aligned_cols=47 Identities=17% Similarity=0.498 Sum_probs=28.9
Q ss_pred HHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Q psy9550 206 EELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQ 253 (271)
Q Consensus 206 ~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQ 253 (271)
..++++|.++. +..+.++ +.|...|.+.+..|+.+|+ ++.+|++|.+
T Consensus 58 a~~~eLr~el~~~~k~~~~~l-r~~~e~L~~eie~l~~~L~~ei~~l~a~~k 108 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAEL-RSENEKLQREIEKLRQELREEINKLRAEVK 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 3444445 5667777777777777777 5777776553
No 50
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=88.33 E-value=1.4 Score=37.90 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.=|++++.|.+.|+. ++++++. .-.++| .+.+.+.+|+||.+|+..|+...
T Consensus 33 ~~G~~~L~~El~~L~~-------~i~~Ar~---~GDlsE-ak~~~~~~e~rI~~L~~~L~~A~ 84 (160)
T PRK06342 33 EAGLKALEDQLAQARA-------AYEAAQA---IEDVNE-RRRQMARPLRDLRYLAARRRTAQ 84 (160)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHH---CCChhH-HHHHHHHHHHHHHHHHHHHccCE
Confidence 3445666667777763 3333332 223445 36677788999999999998543
No 51
>KOG4657|consensus
Probab=88.22 E-value=4.1 Score=38.24 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISK 268 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISK 268 (271)
|.+-+.-++-.+|.-|.-.++| |+.|+..+|.||.|=+-+-+|||.
T Consensus 80 L~~ek~~~q~~ieqeik~~q~e---lEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSE---LEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333444566666666664 556788899999999999999873
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.15 E-value=2 Score=40.71 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchh-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSK----NSLS-EQEKR---ERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk----~SLl-E~Ekr---ERRaLERKiSEmEEELK~L~~L 248 (271)
...|++.|..+|.+++-++.+.+..|++ ++.+ |+=++ |-..|+.|..|||+++..++.+
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 3345666666666666666665555442 2222 22111 3345667777777765544433
No 53
>KOG0804|consensus
Probab=88.11 E-value=3 Score=42.32 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELK 243 (271)
Q Consensus 226 rERRaLERKiSEmEEELK 243 (271)
.++..+|+|+.+++.-+|
T Consensus 375 ~~kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLK 392 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366677777777666554
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.02 E-value=3.9 Score=36.56 Aligned_cols=75 Identities=29% Similarity=0.468 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQE---KRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~E---krERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
...+.|+.+++.+++.++.++..++.... ...+.++| ..++..++..|.++|.||. +||.+.++...|.-.|
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~---~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELA---ELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHH---HHHHHHHHHHHHHHHH
Confidence 45566666666666666666666654322 11333333 4566667777777777654 4455555555555555
Q ss_pred hhh
Q psy9550 263 IRV 265 (271)
Q Consensus 263 IRV 265 (271)
..|
T Consensus 289 l~~ 291 (312)
T PF00038_consen 289 LDV 291 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.96 E-value=0.71 Score=39.74 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhhhcccccch
Q psy9550 227 ERRTMERKLSEMEVELKE----LDQFKKENQRLKDENGAL 262 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~----L~~LRadNQRLKDENgAL 262 (271)
.-+.|+..+..|+++++. |..+...||.|+||.-||
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444432 223344455555554443
No 56
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.96 E-value=4.4 Score=34.79 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|..+++++.|+.+|..+..++.++..+|.
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777776666666665554
No 57
>PRK09039 hypothetical protein; Validated
Probab=87.90 E-value=2.6 Score=39.91 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
.++...++.+|.+++.+++++= .++.+|+.....|+.+|.+|+.++..+...|++.+.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~------e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELA------DLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666652 244455555555555555555555554444444433
No 58
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.70 E-value=2.3 Score=38.59 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVEL 242 (271)
Q Consensus 227 ERRaLERKiSEmEEEL 242 (271)
||..|+.++.+.+.++
T Consensus 76 Ek~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 76 EKEQLEQELREAEAEI 91 (246)
T ss_dssp -----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.67 E-value=4 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhhhc
Q psy9550 230 TMERKLSEMEVELKELD-QFKKENQRLK 256 (271)
Q Consensus 230 aLERKiSEmEEELK~L~-~LRadNQRLK 256 (271)
+|.|||.-||+||...+ .|+.=+.+|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998664 4555555554
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.58 E-value=4.8 Score=37.43 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 233 RKLSEMEVELKELDQ 247 (271)
Q Consensus 233 RKiSEmEEELK~L~~ 247 (271)
.++.+++.|+..+++
T Consensus 251 ~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 251 EQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 61
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.45 E-value=8.7 Score=30.22 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
|.+....+..|++.=-.+|..|++++++|.+.
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555566666665543
No 62
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.43 E-value=3.9 Score=38.86 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELKELD----QFKKENQRLKDE 258 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK~L~----~LRadNQRLKDE 258 (271)
|-+.+...+.+|.+|++++.|..++..+|+.. -+.+. +.+-..||-..+-|||++|.|. +||..-..|-++
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~-~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV-QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34555555666666777776666666555521 12222 2223345666777777777544 666666655544
No 63
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=87.32 E-value=2.2 Score=40.71 Aligned_cols=58 Identities=33% Similarity=0.485 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGA 261 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgA 261 (271)
.+.|+.++++++.+++++..+|++.- ..++|+.+++++|..+++-.+|-+.|.++.|-
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~----------k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNP----------KKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555566666666666665555432 34556666666666666666666665555443
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.20 E-value=4.3 Score=38.84 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9550 238 MEVELKEL 245 (271)
Q Consensus 238 mEEELK~L 245 (271)
++++|+.+
T Consensus 384 l~~~l~~~ 391 (562)
T PHA02562 384 LQDELDKI 391 (562)
T ss_pred HHHHHHHH
Confidence 33333333
No 65
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.92 E-value=4.5 Score=37.21 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|..=+...-+|.|.+..|+++|+.+. ...+.+|+. +++.||+||.+|=
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~--------------------~~~~~~L~~---Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQ--------------------QQTISSLRR---EVESLRADNVKLY 127 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH---HHHHHHHHHHHHH
Confidence 377788899999999999888887766 333444433 3457788887773
No 66
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=86.67 E-value=1.8 Score=39.99 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhcc
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ-FKKENQRLKD 257 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~-LRadNQRLKD 257 (271)
..|..+|.+++.+|..++..+.+ |++||+|||+
T Consensus 72 ~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 72 EYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777666665544 7788887775
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.55 E-value=3.7 Score=41.49 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
..++-.+++..+|++|+.+.++++++...+..+++.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345666777777777777777776665555555543
No 68
>KOG2391|consensus
Probab=86.53 E-value=25 Score=34.84 Aligned_cols=51 Identities=29% Similarity=0.372 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQ 253 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQ 253 (271)
+..+++.|..+++||+.-+.+| +.|+.+||+++..|.+...+|.+=.+||+
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL---------~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKL---------VAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334445555555555554444 45889999999999999999998888844
No 69
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=86.15 E-value=1 Score=41.61 Aligned_cols=30 Identities=37% Similarity=0.685 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
|.+.|..++.|++.-+-.++.|++||+|||
T Consensus 74 en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr 103 (284)
T COG1792 74 ENEELKKELAELEQLLEEVESLEEENKRLK 103 (284)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555
No 70
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=86.13 E-value=6.1 Score=38.06 Aligned_cols=66 Identities=30% Similarity=0.454 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS-------KNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-------k~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.+.++.++++..+.+.++.+|++++..+..++..-. +..+...-...+..|.+++.+|+++++.|.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777666654211 111111114455566666666666666443
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=85.86 E-value=4.9 Score=40.69 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEEL 208 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El 208 (271)
.|.++|+.++.....++.++..++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776666555555555444444
No 72
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.64 E-value=4.6 Score=37.87 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
.++...|.++|..+|++++.|..++..+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~e 79 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555544444433
No 73
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.63 E-value=1.8 Score=43.69 Aligned_cols=52 Identities=12% Similarity=0.318 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 198 RETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 198 k~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
+..|.+.|..+++++.+|+.- +.|...|.++..++|+.|+ +|.+||++|+++
T Consensus 68 qSALteqQ~kasELEKqLaaL------rqElq~~saq~~dle~KIk---eLEaE~~~Lk~Q 119 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEI------RRELDVLNKQRGDDQRRIE---KLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHH
Confidence 344555555555555554431 4555666688888877776 566777777765
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.61 E-value=6 Score=32.52 Aligned_cols=8 Identities=63% Similarity=0.733 Sum_probs=3.5
Q ss_pred HHhhhhhc
Q psy9550 249 KKENQRLK 256 (271)
Q Consensus 249 RadNQRLK 256 (271)
+.|.+|||
T Consensus 114 kee~~klk 121 (151)
T PF11559_consen 114 KEELQKLK 121 (151)
T ss_pred HHHHHHHH
Confidence 34444444
No 75
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.48 E-value=0.87 Score=37.20 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 244 ELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgALIRVISKL 269 (271)
++..|-.||++|+-||..|-+.|.++
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666555555443
No 76
>KOG4643|consensus
Probab=85.31 E-value=4 Score=45.02 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 226 RERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
++++.+....--+|..-+.++.|.++---|+.||+-||--|.+|
T Consensus 513 elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 513 ELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444455555567777777788888888888888776
No 77
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=85.17 E-value=4.3 Score=33.95 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRE-TLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 184 KkLYE~~k~ENErLk~-~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+..|+++++|.+.|+. +.-+...++.+++..=+ -++--..-+.+.+.+++||.+++++|+.+..+.
T Consensus 9 ~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~ii~ 77 (157)
T PRK00226 9 QEGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAEVID 77 (157)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHHhCeecC
Confidence 3456666777777765 34444445555543211 122122336677778999999999999877664
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.97 E-value=6.8 Score=35.79 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
||++.-+.+.+|-..+-++|+..+.+++.+...+.. + +.||...+..|..+.+|++
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq-----a-~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ-----A-ESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666555444332 1 4466667777777776654
No 79
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=84.91 E-value=3.9 Score=37.90 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
....|+.=|..++++-..|...+...+.++++-+.+|++
T Consensus 174 P~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~ 212 (259)
T PF08657_consen 174 PLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLER 212 (259)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888889999999999999999999999999988873
No 80
>PRK12704 phosphodiesterase; Provisional
Probab=84.86 E-value=6.3 Score=39.53 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 231 MERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 231 LERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
|+++-.++++..+.|++++.+-+++++|.
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~~ 140 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQ 140 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555555544443
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.54 E-value=8.7 Score=35.64 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
-+.+.|.+++.|.++++..+.+++.++.+++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le 58 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLE 58 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766666555554
No 82
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=84.54 E-value=3.4 Score=44.55 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVKA-TYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~-~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.+.+|+.+.-+++..|.++|+.++++++.+|+...- .+-....-+.++.+...++.++.++|++|..|..
T Consensus 835 ~~~iD~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 835 AGVIDLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred CcccCHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456787666555555555555555555555554322 2222234444444445556666666666655543
No 83
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.26 E-value=7.7 Score=33.24 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cch--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcccccch
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSK--NSL--SEQEKRERRTMERKLSEM-EVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk--~SL--lE~EkrERRaLERKiSEm-EEELK~L~~LRadNQRLKDENgAL 262 (271)
.++..|+..++..+..+...+..+.. ..+ +..+-++...-+.++-.+ +.-...|..=...++|||+||.+|
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 45556666666666665555554442 111 111122222222233222 222223444456677788888766
No 84
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=84.21 E-value=3 Score=43.57 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.+|.+||..+|++++.++..++..|..
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456778888888888888888877763
No 85
>PRK14127 cell division protein GpsB; Provisional
Probab=84.21 E-value=3.4 Score=34.21 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--h-----hHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNS--L-----SEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--L-----lE~EkrERRaLERKiSEmEEEL 242 (271)
=||....||.+|++++..++.++.+++.++.... . ....-.-.--+=+||+.||.+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 4666667888888888888888888877654210 0 0000012223457788888764
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.13 E-value=3.9 Score=43.28 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.+.+..||++|+.+|+..+.++..+...+++
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~ 35 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKT 35 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhc
Confidence 4678999999999999999999988887765
No 87
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.12 E-value=7.3 Score=35.29 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy9550 232 ERKLSEMEVELK 243 (271)
Q Consensus 232 ERKiSEmEEELK 243 (271)
+.++.+++.+++
T Consensus 245 ~~~l~~~~~~l~ 256 (423)
T TIGR01843 245 LEELTEAQARLA 256 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 88
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.10 E-value=11 Score=30.80 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+...||.++.+++.++.+++..++
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444
No 89
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=83.94 E-value=9.2 Score=31.89 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK 243 (271)
+..+||.+|.. .+..|..+|......++.|+.++++. ..++-+...-+.||.+|..++.+++
T Consensus 17 ~~~~~~e~ll~----~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 17 EDSFDYEQLLD----RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred cccccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665554 45555555555555555555555432 2233333344444444444443333
No 90
>PLN02381 valyl-tRNA synthetase
Probab=83.79 E-value=4.6 Score=43.70 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
...|.+||..+|++++.|+..++..|..
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN 1022 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNA 1022 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4577888999999999999988887763
No 91
>KOG3119|consensus
Probab=83.65 E-value=37 Score=31.38 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+=++=||..++.|+-+|+..+.......+++. |..++ .+|..+|.+++.+|+.||..|.++.
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~---r~~~l---eken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAH---RVAEL---EKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888877766665554433321 11122 3366666666666666666665554
No 92
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=83.65 E-value=2.2 Score=44.50 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcccccchh
Q psy9550 227 ERRTMERKLSEMEVELK-ELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 227 ERRaLERKiSEmEEELK-~L~~LRadNQRLKDENgALI 263 (271)
|+.++..+..++++.-+ +|+.||.+.|+|.||.--|.
T Consensus 16 E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~ 53 (654)
T PF09798_consen 16 ERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLN 53 (654)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544433 78889999999999877663
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.52 E-value=8.6 Score=32.12 Aligned_cols=72 Identities=29% Similarity=0.457 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSK-----------NSLSEQEKRERRTMERKLSEMEVELK----------- 243 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk-----------~SLlE~EkrERRaLERKiSEmEEELK----------- 243 (271)
+.|...+...++..++..++.+++.+..+=+. +.-......+...|+..+.+|+....
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 45555555555555555555554444322111 01111223344455555555554332
Q ss_pred HHHHHHHhhhhhcc
Q psy9550 244 ELDQFKKENQRLKD 257 (271)
Q Consensus 244 ~L~~LRadNQRLKD 257 (271)
..+.||+|.+-||+
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 34567777777775
No 94
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.46 E-value=11 Score=31.27 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
++.+.+..|+.+|+..+..|..+..+++. + .|-...|++|+..|++||...
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dS-----L-~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDS-----L-TFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555444332 2 567788999999999999854
No 95
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=83.36 E-value=2.5 Score=39.16 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
.++-+-|.+...||+.||.+|.+. ..+..++..+|+|.+.|.+|=--++.+.|+.-
T Consensus 62 ~~~~~~~~~~~~en~~Lk~~l~~~------------------------~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~ 117 (284)
T COG1792 62 LEFLKSLKDLALENEELKKELAEL------------------------EQLLEEVESLEEENKRLKELLDFKESSSDYDP 117 (284)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhCCccccccccc
Confidence 444455555666666666655433 33455667788888888888877777777777
Q ss_pred chhhhhh
Q psy9550 261 ALIRVIS 267 (271)
Q Consensus 261 ALIRVIS 267 (271)
..-|||+
T Consensus 118 ~~a~Vi~ 124 (284)
T COG1792 118 IAARVIS 124 (284)
T ss_pred eeeEEEE
Confidence 7777775
No 96
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.28 E-value=3.6 Score=36.73 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
+-.=|.++.+||++|++++.+++.++.++
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777888877777766666555
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.21 E-value=5.4 Score=40.98 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
...+..||.+||++++.|.+=..++.+++++
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~ 245 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKEQEKELDK 245 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777776665544555444443
No 98
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=83.08 E-value=7 Score=37.18 Aligned_cols=71 Identities=28% Similarity=0.442 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
||||+++|++ |++|-+.++.-.+|..+...= .....+ .+-|.+.+.=-+.|---+..++..-..+++|+||
T Consensus 95 KKLY~EVKa~-E~~r~~yeKK~~~Lr~~d~kg--~~~~ki-dkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDe 165 (312)
T PF04782_consen 95 KKLYDEVKAE-EKLRIEYEKKCKQLRKQDAKG--ADSSKI-DKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDE 165 (312)
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHHHHHHHhCC--ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998854 788877777666665553210 111111 1112222222222333344555555666666665
No 99
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.06 E-value=8 Score=39.25 Aligned_cols=38 Identities=32% Similarity=0.501 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+...|+.-+++.....+++...+.+...++..++.+++
T Consensus 166 ~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~ 203 (1179)
T TIGR02168 166 GISKYKERRKETERKLERTRENLDRLEDILNELERQLK 203 (1179)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888877777765544
No 100
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.93 E-value=6.9 Score=35.76 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh-------hc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKA---TYS-------KN---------SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~---~LE-------k~---------SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
...+..|...||...++++.+..+|+. .|+ |. --..+=+.|-.+++.||.|||.-.+ .
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~---~ 126 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQE---E 126 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344556666676666666665555553 232 10 0112237788888999999877654 4
Q ss_pred HHHhhhhhcc
Q psy9550 248 FKKENQRLKD 257 (271)
Q Consensus 248 LRadNQRLKD 257 (271)
|-.||..||+
T Consensus 127 L~rEN~eLKE 136 (195)
T PF10226_consen 127 LIRENLELKE 136 (195)
T ss_pred HHHhHHHHHH
Confidence 4456666663
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.83 E-value=8.1 Score=35.84 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+++...+.+.|+.+....+.++.+++.+++
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.77 E-value=8 Score=39.73 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
...+++..+|.+.|+.+|+++..++..+..+++. ..+..+ ..|...++....++|++++...++.
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~-~~e~~~~~~~~~~le~~~~l~~k~~ 386 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQL-EEELEEKEAENEELEEELKLKKKTV 386 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888887777663 334344 3455566666677777776655443
No 103
>KOG0804|consensus
Probab=82.63 E-value=6.2 Score=40.18 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
+.|.++....+++.+|-+|||+|+.|--.=.--|+||
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 422 LEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 3455566667788889999998886643222234444
No 104
>PRK11020 hypothetical protein; Provisional
Probab=82.39 E-value=7.2 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEME 239 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmE 239 (271)
.+++|..+|-.+|+.++..++.+..+=+..-+.++ ..|..+|+.+|+.+-
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf-~~E~~~l~k~I~~lk 51 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQF-EKEKATLEAEIARLK 51 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 46889999999999999998888665554445555 668888888887754
No 105
>PRK12704 phosphodiesterase; Provisional
Probab=82.38 E-value=8.7 Score=38.56 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhhccc
Q psy9550 244 ELDQFKKENQRLKDE 258 (271)
Q Consensus 244 ~L~~LRadNQRLKDE 258 (271)
.|.+++.+.++++.|
T Consensus 118 ~Le~re~eLe~~~~~ 132 (520)
T PRK12704 118 ELEQKQQELEKKEEE 132 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 106
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=82.33 E-value=8.1 Score=38.10 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 199 ETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.++..++.++.+++.-|. -+.|-||-+.|-..++.++.+||++||.|=
T Consensus 53 ~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 53 REYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666677777777666 345778888999999999999999999873
No 107
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.20 E-value=13 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.++.+...++.++.+++.++..++..|+
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 108
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.19 E-value=8.6 Score=40.28 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=2.9
Q ss_pred ccccCCC
Q psy9550 67 GLTLPSS 73 (271)
Q Consensus 67 ~~~lps~ 73 (271)
|+.+|-+
T Consensus 352 G~~Vpa~ 358 (771)
T TIGR01069 352 GIPIPAN 358 (771)
T ss_pred CCCccCC
Confidence 3344443
No 109
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=82.09 E-value=6.2 Score=33.03 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKE 244 (271)
Q Consensus 228 RRaLERKiSEmEEELK~ 244 (271)
+..|-|+|.-||..||+
T Consensus 48 ~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 48 KKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666553
No 110
>KOG3564|consensus
Probab=81.79 E-value=5.5 Score=41.12 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh---h--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKAT---YS---K--NSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~---LE---k--~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+-+.|+||+-....+++-.++.+.+.+|+.++-+ |+ + .-..++|-++||++|-.+.-||-.++++.++
T Consensus 31 ~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 31 IRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678899998888888888888888887766533 23 1 1245677888999999999999999988775
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=81.66 E-value=4.9 Score=43.36 Aligned_cols=67 Identities=12% Similarity=0.345 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
=+.-|++.++|.+.|+. +.-+..+++.++|.. |.-++==..-+.+++.+|+||.+||++|+...-+.
T Consensus 753 T~eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~~GDLsENaEY~aAKe~q~~le~RI~eLe~~L~~A~IId 822 (906)
T PRK14720 753 TRRALNKKKKELEHLKDVEMPENSKDIGEAQELGDLRENAEYKAAKEKQQQLQAALKRLEAEIDSAKILD 822 (906)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhcCEEeC
Confidence 36678999999999986 677888888888865 33344334558899999999999999999765553
No 112
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=81.50 E-value=12 Score=32.51 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcccccchh
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLKDENgALI 263 (271)
|....+|+....++..+..+..++..+.+ .|+..|+..|.++-++|+++. .-.+|....+.|..||.-|-
T Consensus 39 e~~~~~n~~~~~e~~~L~~d~e~L~~q~~------~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 39 ESLASRNQEHEVELELLREDNEQLETQYE------REKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433332 355666777777777777665 45556666666666665543
No 113
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.34 E-value=4.6 Score=28.61 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=29.6
Q ss_pred Ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 180 ELDY---KKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 180 ~~DY---KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.|| |+=|+.++.+++.|+.+.+.+..|+..++..|.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566 456999999999999999999888888876653
No 114
>PRK11546 zraP zinc resistance protein; Provisional
Probab=81.28 E-value=10 Score=32.91 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
.-.-+.+|+.+...+.+.||.+|...+.||+.+ +..+... ..--++|...|++|..+|-
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL---l~~~~pD---~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL---LTANPPD---SSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCC---HHHHHHHHHHHHHHHHHHH
Confidence 335678899999999999999999998888766 3333222 1123455555555555443
No 115
>KOG4572|consensus
Probab=81.11 E-value=5.4 Score=43.74 Aligned_cols=50 Identities=32% Similarity=0.305 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 220 LSEQEKRERRTMERKLSEM---------EVEL-KELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEm---------EEEL-K~L~~LRadNQRLKDENgALIRVISKL 269 (271)
-++.|..|+..||.+.-|+ |.|+ +++.++|.+|+.+|.||.|+||-|-.|
T Consensus 969 eLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~ 1028 (1424)
T KOG4572|consen 969 ELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEEL 1028 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776552 2233 367789999999999999999987543
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.10 E-value=9.1 Score=38.28 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hc-------------chhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS--KN-------------SLSEQEKRERRTMERKL-SEMEVELKELDQ 247 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~-------------SLlE~EkrERRaLERKi-SEmEEELK~L~~ 247 (271)
..+|-.+..+.-+....|..+..+|+..+..++ +. .-+++-..||..+++++ ++++.+-+.|..
T Consensus 149 ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~e 228 (420)
T COG4942 149 AIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEE 228 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554443 11 11222234454454444 346777777888
Q ss_pred HHHhhhhhcccccchh
Q psy9550 248 FKKENQRLKDENGALI 263 (271)
Q Consensus 248 LRadNQRLKDENgALI 263 (271)
|+++-++|++|=.-+.
T Consensus 229 L~~~~~~L~~~Ias~e 244 (420)
T COG4942 229 LRANESRLKNEIASAE 244 (420)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 8888888887654444
No 117
>KOG4005|consensus
Probab=81.08 E-value=2.7 Score=39.96 Aligned_cols=28 Identities=36% Similarity=0.627 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhccccc
Q psy9550 233 RKLSEMEVELKELDQ----FKKENQRLKDENG 260 (271)
Q Consensus 233 RKiSEmEEELK~L~~----LRadNQRLKDENg 260 (271)
-|++|||+|+|.|.+ |+.||++|+.-|-
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777765542 4444444444333
No 118
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=80.90 E-value=16 Score=27.91 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhhcccccchhh
Q psy9550 242 LKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgALIR 264 (271)
...|.++-.+.+.+.+.|++||+
T Consensus 90 ~~~l~~~~~~~~~~n~~N~~ll~ 112 (143)
T PF05130_consen 90 WRELRELLEELQELNERNQQLLE 112 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666667777777765
No 119
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.81 E-value=22 Score=31.44 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh
Q psy9550 226 RERRTMERKLSEMEVELK-ELDQFKKENQRL 255 (271)
Q Consensus 226 rERRaLERKiSEmEEELK-~L~~LRadNQRL 255 (271)
++=.++-|-++||-..-. .|.++|+|.-|.
T Consensus 148 r~v~~lRr~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 148 REVVALRRQFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566666666655544 677777765543
No 120
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.65 E-value=13 Score=32.99 Aligned_cols=43 Identities=12% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhcccccchhhhhh
Q psy9550 225 KRERRTMERKLSEMEVELKE----LDQFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~----L~~LRadNQRLKDENgALIRVIS 267 (271)
..|..+|++.+.+|+.+++. +.+|..+++-++++=.+||.+|-
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443 33455555556666677776654
No 121
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.11 E-value=12 Score=38.62 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQ 210 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~q 210 (271)
..++.+++.|+.++++++.+|..
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 122
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.01 E-value=7.7 Score=40.50 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
...+.+|.++||.+|+.....=.++|.+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3467788888998887766655555544
No 123
>KOG4001|consensus
Probab=79.94 E-value=9.3 Score=35.91 Aligned_cols=9 Identities=56% Similarity=0.995 Sum_probs=6.1
Q ss_pred chHHHHHHH
Q psy9550 182 DYKKLYEES 190 (271)
Q Consensus 182 DYKkLYE~~ 190 (271)
-|..|||..
T Consensus 164 AYqtlyeSs 172 (259)
T KOG4001|consen 164 AYQTLYESS 172 (259)
T ss_pred HHHHHHHHH
Confidence 577788753
No 124
>PLN02943 aminoacyl-tRNA ligase
Probab=79.65 E-value=8.8 Score=41.02 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSK-----NSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk-----~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
..+|.+||..+|++++.|+..++..|.. .+..+.-++|+..| .+++++|+.|.+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl----~~~~~~l~~~~~ 945 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKA----AEAEEKIKLTKN 945 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3467788888899999998888887763 23444444444333 355555444443
No 125
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.60 E-value=9.5 Score=40.53 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----c----------chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSK-----N----------SLSEQEKRERRTMERKLSEMEVELKELD-QFKK 250 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk-----~----------SLlE~EkrERRaLERKiSEmEEELK~L~-~LRa 250 (271)
++.+..++|+|+-+|++...++.+...++++ . .+.+.-.++-+.|.+||..||+.|+.=+ +|..
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888777777777666655542 1 2334445566778888888888887443 4777
Q ss_pred hhhhhc
Q psy9550 251 ENQRLK 256 (271)
Q Consensus 251 dNQRLK 256 (271)
++.||+
T Consensus 418 ~k~Rl~ 423 (775)
T PF10174_consen 418 EKERLS 423 (775)
T ss_pred HHHHHh
Confidence 888887
No 126
>KOG4343|consensus
Probab=79.54 E-value=2 Score=44.54 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhhcccccchhhhhh
Q psy9550 244 ELDQFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgALIRVIS 267 (271)
-|++|-+||+-||.||+||=|-|.
T Consensus 310 rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 310 RLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467777899999999999988664
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.51 E-value=13 Score=37.49 Aligned_cols=17 Identities=47% Similarity=0.710 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELK 243 (271)
Q Consensus 227 ERRaLERKiSEmEEELK 243 (271)
+|..||.++.+++++++
T Consensus 263 ~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 263 EREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666555554
No 128
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.49 E-value=20 Score=27.76 Aligned_cols=57 Identities=30% Similarity=0.454 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
-++..+.+.|+.+-..+.+++.+++..= ....++ ..|-..+-.+|.++|++++.+++
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~--~~~~~l-~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAG--EDAEEL-KAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTT--CCTHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCc--ccHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455554444444444443321 112222 44566666777777777665543
No 129
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.25 E-value=0.61 Score=47.35 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFKKENQRLKDENGA 261 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LRadNQRLKDENgA 261 (271)
+.|.+.|++|+.-||.-..+|.+|+.++++|.+|=.+
T Consensus 287 eEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~s 323 (722)
T PF05557_consen 287 EEEKRSLQRKLERLEELEEELAELQLENEKLEDELNS 323 (722)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6699999999999999999999999999999987443
No 130
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.20 E-value=14 Score=28.19 Aligned_cols=33 Identities=45% Similarity=0.512 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHhhhhhcccccchh
Q psy9550 231 MERKLSEMEVELKEL-----------DQFKKENQRLKDENGALI 263 (271)
Q Consensus 231 LERKiSEmEEELK~L-----------~~LRadNQRLKDENgALI 263 (271)
+.||++-.|.++|.| .....+|++||+||.||=
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554 445588999999998873
No 131
>PRK10698 phage shock protein PspA; Provisional
Probab=79.02 E-value=18 Score=32.37 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h-----------------cchhHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS----K-----------------NSLSEQEKRERRTMERKLSEME 239 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE----k-----------------~SLlE~EkrERRaLERKiSEmE 239 (271)
-.|+.-|+......++|+.++++++..+.++|...+ | ..-.-+..||| ||+||.+||
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~r--mE~ki~~~E 179 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFES--FERRIDQME 179 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH--HHHHHHHHH
Confidence 356777777777788888888888877777764432 0 01122334443 788888888
Q ss_pred HHHHHH
Q psy9550 240 VELKEL 245 (271)
Q Consensus 240 EELK~L 245 (271)
-+-...
T Consensus 180 a~aea~ 185 (222)
T PRK10698 180 AEAESH 185 (222)
T ss_pred HHHhHh
Confidence 776654
No 132
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.93 E-value=9.6 Score=36.74 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=40.5
Q ss_pred CCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch----h---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 179 GELDYKKLY-EESQAELSRLRETLSKTEEELNQVKATYSKNSL----S---EQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 179 ~~~DYKkLY-E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SL----l---E~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.+.. .+- .+.+.+.++|+.++++++.++.+++..|.+... . .-.......|.+...+|.++++.|.
T Consensus 321 T~i~v-g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 395 (451)
T PF03961_consen 321 TEIEV-GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELK 395 (451)
T ss_pred EEEEE-ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 333 666777799999999999999999888775321 1 1112233444445555555555444
No 133
>KOG0161|consensus
Probab=78.54 E-value=9.9 Score=44.18 Aligned_cols=16 Identities=38% Similarity=0.682 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELK 243 (271)
Q Consensus 228 RRaLERKiSEmEEELK 243 (271)
++.|++.+.++.++|.
T Consensus 1127 r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1127 RRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 134
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.37 E-value=10 Score=27.19 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+..++...|+.++++.+.+..+++.++++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655553
No 135
>PRK03918 chromosome segregation protein; Provisional
Probab=78.36 E-value=12 Score=38.03 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=5.8
Q ss_pred ccccCCcccC
Q psy9550 55 GSTYGGTSSG 64 (271)
Q Consensus 55 ~~tyggt~~g 64 (271)
..-+|++++|
T Consensus 26 ~~i~G~nG~G 35 (880)
T PRK03918 26 NLIIGQNGSG 35 (880)
T ss_pred EEEEcCCCCC
Confidence 3456666665
No 136
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.26 E-value=15 Score=36.93 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q psy9550 244 ELDQFKKEN 252 (271)
Q Consensus 244 ~L~~LRadN 252 (271)
.|+++..+-
T Consensus 119 eLee~~~e~ 127 (514)
T TIGR03319 119 NLDEKEEEL 127 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 137
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.14 E-value=16 Score=33.37 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhcccccchhhhh
Q psy9550 225 KRERRTMERKLSEMEVELKE----LDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~----L~~LRadNQRLKDENgALIRVI 266 (271)
.+|...|.-+|..|++|.+. .+.|+.+.+.|-+++.+|=+-|
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 56777888888888887763 3456667777777777775543
No 138
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.14 E-value=20 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEE 207 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~E 207 (271)
..++..+...+..+...|..+|.+++..
T Consensus 246 ~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 246 ESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999888777664
No 139
>KOG1962|consensus
Probab=78.04 E-value=9.6 Score=35.07 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSK 203 (271)
Q Consensus 188 E~~k~ENErLk~~L~e 203 (271)
|++..+|+.|+.++..
T Consensus 130 ~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 130 EKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4555667777666544
No 140
>PRK14143 heat shock protein GrpE; Provisional
Probab=78.03 E-value=35 Score=31.50 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=45.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
+...|..+-.+++..+.+.|+.++++.+.++.-+.+.++ |..--|.+...+.+.+.=|.+| |-+++.|..=.+-
T Consensus 60 ~~~~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l---LpV~DnLerAl~~ 136 (238)
T PRK14143 60 ETAADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI---LPVVDNFERARQQ 136 (238)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhc
Confidence 344555555667777777788888777777666666655 2333455555566666555555 6666666433333
Q ss_pred h
Q psy9550 255 L 255 (271)
Q Consensus 255 L 255 (271)
+
T Consensus 137 ~ 137 (238)
T PRK14143 137 L 137 (238)
T ss_pred c
Confidence 3
No 141
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.00 E-value=19 Score=31.63 Aligned_cols=10 Identities=60% Similarity=0.923 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q psy9550 183 YKKLYEESQA 192 (271)
Q Consensus 183 YKkLYE~~k~ 192 (271)
|+.||+....
T Consensus 100 y~~l~~s~~~ 109 (189)
T PF10211_consen 100 YQTLYESSIA 109 (189)
T ss_pred HHHHHHHHHH
Confidence 4455554433
No 142
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=77.97 E-value=4.2 Score=32.14 Aligned_cols=28 Identities=43% Similarity=0.484 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
--+...||.+|+++|++.+.||.+++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999988876
No 143
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=77.94 E-value=21 Score=26.15 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~ 246 (271)
..+|..|..||.+...+|+.|.
T Consensus 53 ~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 53 PSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999988888877654
No 144
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.84 E-value=14 Score=32.74 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVEL 242 (271)
Q Consensus 226 rERRaLERKiSEmEEEL 242 (271)
.+...||+||-||+++.
T Consensus 131 ~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 131 SEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666653
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.80 E-value=17 Score=36.64 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+...|..++++++.|+.++..+|.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666665554
No 146
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.73 E-value=12 Score=26.81 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 193 ENErLk~~L~e~~~El~ql 211 (271)
+..+++.++++++.+++++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l 36 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEEL 36 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554
No 147
>KOG2129|consensus
Probab=77.61 E-value=13 Score=38.00 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEE 207 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~E 207 (271)
+....-|..-..++.|.||||..|..+|++
T Consensus 246 D~a~~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 246 DEAAAEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777788899999999999888875
No 148
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.59 E-value=12 Score=27.00 Aligned_cols=31 Identities=42% Similarity=0.554 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
..||.++.+|+.+... |+.+++.|++|+.+|
T Consensus 29 ~~Le~~~~~L~~en~~---L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 29 EELEEKVEELESENEE---LKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455566666555443 333444444444333
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.53 E-value=19 Score=34.18 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSK 203 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e 203 (271)
..|..++.|...|+..-.+
T Consensus 179 ~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 179 DRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 4444444444444433333
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.37 E-value=6.9 Score=32.80 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS----KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE----k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
-.+++.++..|+.++..+..||+.+...+- ...+.++ +.|-.+|+.|+..|...-+.+. ..|-+++.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l-~~e~~~l~~kL~~l~~~~~~vs--~ee~~~~~~~~ 154 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEEL-EEEIEELEEKLEKLRSGSKPVS--PEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Confidence 667777888888888888888888876653 1223334 5577888888888887555533 24444554443
No 151
>PF13864 Enkurin: Calmodulin-binding
Probab=77.16 E-value=7.7 Score=30.39 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
++-|..||++|.++|+-++.|..
T Consensus 73 ~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 73 KRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677899999999998888753
No 152
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=77.01 E-value=14 Score=35.15 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=43.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHH--HHHH------HHHH-HH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 176 NENGELDYKKLYEESQAELSRLRETLS--KTEE------ELNQ-VK---ATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 176 ~e~~~~DYKkLYE~~k~ENErLk~~L~--e~~~------El~q-lk---~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
++...++.+.+|--.+.---+.+.+++ +... ++.. .| ..|.|-+ ++..|+..=||+++|.||..|
T Consensus 75 q~g~Kigled~~t~~r~~eakvraei~~mkVt~kvn~h~kI~g~rKtA~~~~rKl~---~ke~E~~EKErqlSeAeEn~k 151 (265)
T PF06409_consen 75 QEGIKIGLEDLFTLWRHMEAKVRAEIRKMKVTTKVNSHYKINGKRKTAKKHLRKLS---MKECEHAEKERQLSEAEENGK 151 (265)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHhhHHHHHHHH---HHHHHHHHHHhhhhhhhhccc
Confidence 444557777777655555555555555 2221 2222 22 2233434 455566777999999998765
Q ss_pred ----HHHHHHHhhhhhcc
Q psy9550 244 ----ELDQFKKENQRLKD 257 (271)
Q Consensus 244 ----~L~~LRadNQRLKD 257 (271)
++.-.+...||+.+
T Consensus 152 l~mkei~tY~~~fQ~~Qe 169 (265)
T PF06409_consen 152 LAMKEIHTYKQMFQRMQE 169 (265)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 33444444454443
No 153
>KOG1962|consensus
Probab=76.91 E-value=7.4 Score=35.80 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
+.-+|..+..++.. +-+.|.+|+++|.+
T Consensus 180 ~~~al~Kq~e~~~~---EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 180 KVDALKKQSEGLQD---EYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHccc---HHHHHHHHHHHHHH
Confidence 34444444433322 23444555555554
No 154
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.75 E-value=25 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
.|+.-|+......++|+.+|.+++.++.++|..
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777766643
No 155
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.67 E-value=2.6 Score=34.94 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 244 ELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgALIRVISKL 269 (271)
++..|-.||++|+-||.-|=+.|.++
T Consensus 30 ~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 30 QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677888888888777777765
No 156
>KOG0612|consensus
Probab=76.66 E-value=13 Score=41.83 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHhhhhhcccccch
Q psy9550 220 LSEQEKRERRTMERKLSEMEVE-LK-----ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEE-LK-----~L~~LRadNQRLKDENgAL 262 (271)
+.-++. +|++...+++++|+| +| .+.-+..++|++.+||-.|
T Consensus 646 l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 646 LLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 677777777777772 22 2333344555666666555
No 157
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.55 E-value=15 Score=40.12 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS-----KNSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
++-++.+..+++.++.+.+..+.++.+++..+. +..+.+. -..+..||.+|.+|.+++..
T Consensus 835 ~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~-l~~r~~le~~L~el~~el~~ 899 (1311)
T TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN-LQRRQQFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345566655666666666666666666643332 1223332 22666677777776666543
No 158
>KOG0981|consensus
Probab=76.52 E-value=6.5 Score=41.47 Aligned_cols=64 Identities=28% Similarity=0.451 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSKN------SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
..|+|..++++.+.||.+++.+|.++ -..+-++++-.+++++|..|+++|+.|.--..| ||||-
T Consensus 637 smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~d----keenK 706 (759)
T KOG0981|consen 637 SMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTD----KEENK 706 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccc----hhhcc
Confidence 34556666666666666666555422 223445557777888999999999887655444 55664
No 159
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=76.44 E-value=19 Score=32.16 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=10.3
Q ss_pred HHHHhhhhhcccccchh
Q psy9550 247 QFKKENQRLKDENGALI 263 (271)
Q Consensus 247 ~LRadNQRLKDENgALI 263 (271)
.+..||++|..+=.-||
T Consensus 160 ~i~~EN~~L~k~L~~l~ 176 (206)
T PF14988_consen 160 SIKRENQQLRKELLQLI 176 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777775544444
No 160
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.37 E-value=10 Score=40.81 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQ 210 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~q 210 (271)
++.||-.||++|+-+.++|.+
T Consensus 392 lrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 345555666666555555544
No 161
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.07 E-value=14 Score=39.22 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|..+....=..|..+|.+++.|+.++|.++.
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~ 51 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELS 51 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555444
No 162
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.01 E-value=19 Score=36.15 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=5.9
Q ss_pred HHHHHHHhhhhhccc
Q psy9550 244 ELDQFKKENQRLKDE 258 (271)
Q Consensus 244 ~L~~LRadNQRLKDE 258 (271)
.|.+.+.+.++++.|
T Consensus 112 ~L~~re~eLee~~~e 126 (514)
T TIGR03319 112 ELSNKEKNLDEKEEE 126 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444333
No 163
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.93 E-value=37 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
..|.=|+.+..|.+.|+.+|.+.+.+|..++.
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888999999999999999999998876
No 164
>KOG2010|consensus
Probab=75.92 E-value=15 Score=36.47 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 184 KKLYEESQAELSR---------LRETLSKTEEELNQVKATYS-KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 184 KkLYE~~k~ENEr---------Lk~~L~e~~~El~qlk~~LE-k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadN 252 (271)
|.||--+.-+||+ ||..|.+.+.+|+.-.-+-+ ++.=.+.+|+---+|.-++.|+-++|++-++|=.+|
T Consensus 130 kaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~ 208 (405)
T KOG2010|consen 130 KAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEH 208 (405)
T ss_pred HHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666654 88899999888888776654 555555656666789999999999999998887664
No 165
>KOG4001|consensus
Probab=75.91 E-value=16 Score=34.39 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=6.8
Q ss_pred HHHHHHHhhhhhcc
Q psy9550 244 ELDQFKKENQRLKD 257 (271)
Q Consensus 244 ~L~~LRadNQRLKD 257 (271)
+++-|+.-|+.||.
T Consensus 236 ei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 236 EIEFLKETNRQLKA 249 (259)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555553
No 166
>KOG0612|consensus
Probab=75.72 E-value=15 Score=41.33 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
..+.|+.+++.|++.+.++++||+.+ +..|+.+.|++.
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~---q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDA---QKKNDNAADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 34556778999999999999999988 455555555544
No 167
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.68 E-value=19 Score=36.06 Aligned_cols=61 Identities=11% Similarity=0.345 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK---------NSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk---------~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
.+...|.+++..+|.+.+++.+++..+|.+ ..+.+. ..+...++++|++++..|+.|..=+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s-~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIET-ADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555666665555555555555444331 234444 3456677888888888888776655
No 168
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.44 E-value=29 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk 212 (271)
+...|...|..+++.++.|+..++
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 169
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=75.36 E-value=16 Score=30.18 Aligned_cols=52 Identities=31% Similarity=0.440 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
.|+.+...+.+..+.++.+-+.||.+++..-+ ...++++ ++||.|-+.||+.
T Consensus 63 ~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~---~~KI~K~-----~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 63 GLKAERQQKIAEKQQKVAEREAELKEAQAKGD---SDKIAKR-----QKKLAEAKAELKE 114 (115)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHH-----HHHHHHHHHHHhh
Confidence 36666666666666666666666666644321 1334343 6788888888874
No 170
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=75.23 E-value=36 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhhhhhccc
Q psy9550 227 ERRTMERKLSEMEVEL----KELDQFKKENQRLKDE 258 (271)
Q Consensus 227 ERRaLERKiSEmEEEL----K~L~~LRadNQRLKDE 258 (271)
..+.|.....++..-| ..+.+|+.+.++++++
T Consensus 143 D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 143 DSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4455555555555444 4677788777777654
No 171
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=75.16 E-value=1.4e+02 Score=33.11 Aligned_cols=8 Identities=38% Similarity=0.235 Sum_probs=4.0
Q ss_pred cccchhhh
Q psy9550 258 ENGALIRV 265 (271)
Q Consensus 258 ENgALIRV 265 (271)
|||-+++|
T Consensus 534 ~~~~~~~~ 541 (1021)
T PTZ00266 534 ENGLSAGG 541 (1021)
T ss_pred cccccccc
Confidence 45555544
No 172
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.16 E-value=18 Score=38.03 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=3.1
Q ss_pred ccccCCC
Q psy9550 67 GLTLPSS 73 (271)
Q Consensus 67 ~~~lps~ 73 (271)
|+.+|-.
T Consensus 357 G~~vpa~ 363 (782)
T PRK00409 357 GLPIPAN 363 (782)
T ss_pred CCCcccC
Confidence 4444443
No 173
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=75.14 E-value=14 Score=25.82 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
..+++|+.++++++..|+++++..+.|
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L~~l 65 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQLEHL 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999887654
No 174
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.01 E-value=22 Score=28.56 Aligned_cols=56 Identities=14% Similarity=0.363 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-c---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSK-N---SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk-~---SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+.+.+.|.+++++.+..+.++..+++. + .+..+ +-+--.|+.++.+|+.+++.+.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L-~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDL-QLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 677788888888888888888877773 2 23223 22333445555555555554443
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.98 E-value=18 Score=32.04 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhhhcccccchhhhh
Q psy9550 229 RTMERKLSEMEVELKEL-DQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 229 RaLERKiSEmEEELK~L-~~LRadNQRLKDENgALIRVI 266 (271)
--||+||..|.+.|..- .+|-.=.....-+..||..|-
T Consensus 146 ~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~ 184 (201)
T PF13851_consen 146 LLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVS 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566666666665532 233333344444555555443
No 176
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.84 E-value=39 Score=26.55 Aligned_cols=78 Identities=29% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKN------SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
...-+.|.+++...+..-..+|.+....|+.. .+-+.+.+-.+|+ -.+++|-+......++..+|+.+-+
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~----k~a~~e~k~~~~k~~ei~~l~~~l~ 91 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAE----KRAEEEKKKKEEKEAEIKKLKAELE 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544444421 2333333323332 2334444444444445555555554
Q ss_pred chhhhhhc
Q psy9550 261 ALIRVISK 268 (271)
Q Consensus 261 ALIRVISK 268 (271)
+|--.|.+
T Consensus 92 ~l~~~~~k 99 (126)
T PF13863_consen 92 ELKSEISK 99 (126)
T ss_pred HHHHHHHH
Confidence 44444444
No 177
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.78 E-value=20 Score=37.61 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=3.8
Q ss_pred chHHHHHHH
Q psy9550 182 DYKKLYEES 190 (271)
Q Consensus 182 DYKkLYE~~ 190 (271)
+.-+|.+++
T Consensus 517 ~~~~li~~l 525 (782)
T PRK00409 517 KLNELIASL 525 (782)
T ss_pred HHHHHHHHH
Confidence 444444433
No 178
>KOG2891|consensus
Probab=74.75 E-value=14 Score=36.39 Aligned_cols=41 Identities=37% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
+.|+.|-|.+-|+--|.|.=-.+++++|.--++.|.|..||
T Consensus 383 ~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal 423 (445)
T KOG2891|consen 383 EFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDAL 423 (445)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555444332224444444444555555555
No 179
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.06 E-value=35 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
|.....+...+..++..++.++.++...
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~ 34 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELT 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665543
No 180
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.03 E-value=98 Score=30.77 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=13.1
Q ss_pred CCcchHHHHHHH---HHHHHHHHHHHHHHHH
Q psy9550 179 GELDYKKLYEES---QAELSRLRETLSKTEE 206 (271)
Q Consensus 179 ~~~DYKkLYE~~---k~ENErLk~~L~e~~~ 206 (271)
.....+++.+++ +.+..+|...+++++.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554433 3344444444444444
No 181
>KOG4010|consensus
Probab=74.03 E-value=15 Score=33.86 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVE--LKELDQFKKEN 252 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEE--LK~L~~LRadN 252 (271)
|.|.|+.+|.++++|+..||.-|- .+ ||.++||--. |..|..|+.+.
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLa--------AK-----erH~~ELKRKLGlt~~~EL~qni 93 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLA--------AK-----ERHAAELKRKLGLTVLKELKQNI 93 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HH-----HHHHHHHHHHhCcchHHHHHHHH
Confidence 445899999999999999976553 22 3334444333 34677777664
No 182
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.97 E-value=38 Score=26.56 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
|.....+.+.|..+++.++.++.+.+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~ 34 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKK 34 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666555555543
No 183
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.89 E-value=21 Score=40.50 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccchhhhhhccC
Q psy9550 226 RERRTMERKLSEMEVELK----ELDQFKKENQRLKDENGALIRVISKLS 270 (271)
Q Consensus 226 rERRaLERKiSEmEEELK----~L~~LRadNQRLKDENgALIRVISKLS 270 (271)
......+.++.+++.++. .|.++++..+.+..+...+|+.+.|.+
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~ 490 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVS 490 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 445566777777777665 466788888899999999999888765
No 184
>PRK11519 tyrosine kinase; Provisional
Probab=73.75 E-value=16 Score=37.45 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.+.+|++++++++.++..+.+...+.++|+
T Consensus 347 ~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~ 376 (719)
T PRK11519 347 KRKALEDEKAKLNGRVTAMPKTQQEIVRLT 376 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345666667766666666666555555544
No 185
>KOG0250|consensus
Probab=73.74 E-value=13 Score=41.01 Aligned_cols=64 Identities=25% Similarity=0.457 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK--NSLS------EQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLl------E~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
++...+.+.|+.++.+++.+++.|+.+++. ..+. +..+.+.+.|.++|....++|+.|.+-+.|
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444445555555555555555544431 1111 112456778888888888888888776543
No 186
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.56 E-value=23 Score=33.54 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 234 KLSEMEVELKELDQ 247 (271)
Q Consensus 234 KiSEmEEELK~L~~ 247 (271)
+++|+++++..++.
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 187
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.53 E-value=20 Score=36.77 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcccccchhhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYS----KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKE-NQRLKDENGALIRV 265 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LE----k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRad-NQRLKDENgALIRV 265 (271)
.+=|.++|.+++.+|.++..+|+ ++-+.+++ .|-.++=.++.+++.++.+|....++ .++..++|.+++.+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~-~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l 344 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLN-LEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRAL 344 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 34444555555555555554444 12122221 12233334556666666555544444 33456666555443
No 188
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.49 E-value=14 Score=29.83 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~ql 211 (271)
+++.+.++.++++++.+..+|
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333
No 189
>PF15294 Leu_zip: Leucine zipper
Probab=73.31 E-value=11 Score=35.89 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh-----------hcchhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQV-------KATYS-----------KNSLSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~ql-------k~~LE-----------k~SLlE~EkrERRaLERKiSEmEEEL 242 (271)
.--.+.-..++.||++||.+|...+.+.... +.+|. +..+ -....+--.||.+++-|..|+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~-~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDL-SFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cccccchhhHHHHHHHHHHHH
Confidence 3456777888999999999998877653322 22221 0011 112334445788898888886
Q ss_pred H-HHHHHHHhhhhhcc
Q psy9550 243 K-ELDQFKKENQRLKD 257 (271)
Q Consensus 243 K-~L~~LRadNQRLKD 257 (271)
. .+.++-..+.-|++
T Consensus 207 ek~~~d~~~~~k~L~e 222 (278)
T PF15294_consen 207 EKALQDKESQQKALEE 222 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5 45555444444443
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.14 E-value=31 Score=29.74 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------h-------cchhHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS-------------K-------NSLSEQEKRERRTMERKLSEMEV 240 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-------------k-------~SLlE~EkrERRaLERKiSEmEE 240 (271)
-.|++.++......++|+..|.+++..+.+++.+.+ + ..+.+. ...=..||.||.+||-
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a-~~~~er~e~ki~~~ea 179 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSA-MDSFERMEEKIEEMEA 179 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch-HHHHHHHHHHHHHHHH
Confidence 456777777888888888888888777777765443 0 011111 1122346888888888
Q ss_pred HHHHHHHHH
Q psy9550 241 ELKELDQFK 249 (271)
Q Consensus 241 ELK~L~~LR 249 (271)
+......|.
T Consensus 180 ~a~a~~el~ 188 (221)
T PF04012_consen 180 RAEASAELA 188 (221)
T ss_pred HHHHHHHhc
Confidence 888777777
No 191
>KOG0239|consensus
Probab=73.13 E-value=19 Score=37.58 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=10.4
Q ss_pred HHHHhhhhhcccccchhhhhh
Q psy9550 247 QFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 247 ~LRadNQRLKDENgALIRVIS 267 (271)
+|..+.|.|| ..|||+-
T Consensus 304 kL~N~i~eLk----GnIRV~C 320 (670)
T KOG0239|consen 304 KLHNEILELK----GNIRVFC 320 (670)
T ss_pred HHHHHHHHhh----cCceEEE
Confidence 5666666665 4677754
No 192
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=72.90 E-value=20 Score=32.02 Aligned_cols=22 Identities=36% Similarity=0.669 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~ 246 (271)
+..+..+++++.+|++||+..+
T Consensus 152 ~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 152 KKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888887654
No 193
>KOG4403|consensus
Probab=72.34 E-value=13 Score=38.27 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhhh
Q psy9550 201 LSKTEEELNQVKATYSKNSLS-EQEKRERRTMERKLS------------EMEVELKELDQFKKENQRL 255 (271)
Q Consensus 201 L~e~~~El~qlk~~LEk~SLl-E~EkrERRaLERKiS------------EmEEELK~L~~LRadNQRL 255 (271)
|+.+++.+.+++..|+++..- +-=.-||.-||||+- |.|-+.|+|++||....+-
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kA 321 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKA 321 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 344455566666666543211 000236777787776 4566667888888665543
No 194
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.29 E-value=29 Score=36.87 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATYS--K-----------NSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k-----------~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
++.-|..+..|..+|+.+|+.+..++++++...+ + .-+..+|+.-+.. +.+|.+||.+|+.+.++-
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~-qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRED-QERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888887776666553321 1 1122233322222 448999999999988888
Q ss_pred Hhhh
Q psy9550 250 KENQ 253 (271)
Q Consensus 250 adNQ 253 (271)
.|+|
T Consensus 436 ~E~q 439 (717)
T PF09730_consen 436 GESQ 439 (717)
T ss_pred HhHH
Confidence 7765
No 195
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.98 E-value=21 Score=36.95 Aligned_cols=58 Identities=17% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKA-TYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~-~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.+...|..||.+|.+++.-...+-. .+|-.+-+..|..-++.|..|+.+|+++|..+.
T Consensus 157 RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778887777775444422 233344556778888888899988887766543
No 196
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=71.95 E-value=33 Score=31.11 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~ 246 (271)
+...++.++.+++.++..+.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555444
No 197
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=71.91 E-value=35 Score=27.40 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
++.++.+|+.+...++..+..+..++.+++ +..+.+.-++| ..++.+..+-.+++|
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~-qq~r~~~e~~~e~ik 84 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKRE-QQLRQQSEERRESIK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 567788888888888777777777776554 44555443332 234433333333333
No 198
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.73 E-value=24 Score=38.51 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKELD 246 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~ 246 (271)
+..++.++.+++.+++.+.
T Consensus 680 ~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 680 KEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 199
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.62 E-value=49 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~ 213 (271)
+..++.|+.++++.+.++.+.|.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.59 E-value=29 Score=31.59 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------h---------------cchhHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYS---------K---------------NSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE---------k---------------~SLlE~EkrERRaLERKiSE 237 (271)
-+++-|.+...-.++|+..+.+++..+.+++.+++ + .++..+|+ +|+||.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer-----~e~kiee 177 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFER-----MEEKIEE 177 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH-----HHHHHHH
Confidence 45666777777788888888888888888876543 0 02333433 5788888
Q ss_pred HHHHHHHHHHH
Q psy9550 238 MEVELKELDQF 248 (271)
Q Consensus 238 mEEELK~L~~L 248 (271)
||........|
T Consensus 178 ~ea~a~~~~el 188 (225)
T COG1842 178 REARAEAAAEL 188 (225)
T ss_pred HHHHHHHhHHh
Confidence 88777666544
No 201
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=71.58 E-value=14 Score=29.25 Aligned_cols=47 Identities=21% Similarity=0.414 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 199 ETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
.+|++++..|.+++..|+++.= ++-+..|-..|.++|.||+.+.+.+
T Consensus 3 ~~i~eL~~Dl~El~~Ll~~a~R----~rVk~~L~~ei~klE~eI~~~~~~~ 49 (79)
T PF09032_consen 3 EQIEELQLDLEELKSLLEQAKR----KRVKDLLTNEIRKLETEIKKLKEAK 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHCHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577788888888877763210 2234455566666666666655433
No 202
>KOG4253|consensus
Probab=71.54 E-value=24 Score=31.87 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy9550 198 RETLSKTEEELNQVKATYSKNSLSEQEKRERRT-MERKLSEMEVELKELDQFK 249 (271)
Q Consensus 198 k~~L~e~~~El~qlk~~LEk~SLlE~EkrERRa-LERKiSEmEEELK~L~~LR 249 (271)
+.|++++++|++.+ +-++++-|.| |||||..|-.|+|.-.+-+
T Consensus 50 ~~ei~dmKqelnav---------s~qD~fAkwaRlnRKi~kl~~ele~qs~n~ 93 (175)
T KOG4253|consen 50 VAEIQDMKQELNAV---------SMQDNFAKWARLNRKINKLDKELETQSKNK 93 (175)
T ss_pred HHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665544 3344555543 8999999999997554444
No 203
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=71.51 E-value=38 Score=29.45 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
++...+.+...+.+.++.+|+.++.++...+..+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 61 DYQLALQAALAQLAAAEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455555555666666666666666666655554444
No 204
>PRK02224 chromosome segregation protein; Provisional
Probab=71.50 E-value=17 Score=37.10 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELKELD 246 (271)
Q Consensus 230 aLERKiSEmEEELK~L~ 246 (271)
.++.++.++++++..|.
T Consensus 409 ~~e~~l~~l~~~~~~l~ 425 (880)
T PRK02224 409 NAEDFLEELREERDELR 425 (880)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 205
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=71.45 E-value=28 Score=31.69 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=7.0
Q ss_pred ccccchhhhhhcc
Q psy9550 257 DENGALIRVISKL 269 (271)
Q Consensus 257 DENgALIRVISKL 269 (271)
.|++=||-|+++|
T Consensus 119 ae~~klv~iY~~M 131 (192)
T COG3334 119 AEDGKLVKIYSKM 131 (192)
T ss_pred hhhhHHHHHHHcC
Confidence 3444455565555
No 206
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=71.28 E-value=13 Score=39.53 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRE-TLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 184 KkLYE~~k~ENErLk~-~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.-|++.++|.+.|+. +.-+..+++++++..=+ -++-=..-|++++.++++|.+||++|.-..
T Consensus 571 ~eG~~kLkeEL~~L~~v~rpei~k~I~eAR~~GDLsENaEY~aAKe~q~~le~RI~~Le~~L~rA~ 636 (718)
T PRK06330 571 SESFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLSEEINRAR 636 (718)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHHHHHccCE
Confidence 5678888888888885 56677777887775422 233333447889999999999999998543
No 207
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.16 E-value=11 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+|++.+.||..|+.++...+.|-+++....+
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999988888888765544
No 208
>KOG2751|consensus
Probab=71.10 E-value=18 Score=36.59 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATYS-----KNSLSEQEK---RERRTMERKLSEMEVELKELDQFKK---- 250 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLlE~Ek---rERRaLERKiSEmEEELK~L~~LRa---- 250 (271)
.++--++++.|+++|-.+|+++.++-.++-.+|. +..+++-|. +|-+.+.|..-+.|+||+-|..+++
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~ 260 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQA 260 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 3344455666777777777777666555544332 223332222 3444556666667777776666552
Q ss_pred hhhhhccccc
Q psy9550 251 ENQRLKDENG 260 (271)
Q Consensus 251 dNQRLKDENg 260 (271)
.-.+|+++|-
T Consensus 261 qldkL~ktNv 270 (447)
T KOG2751|consen 261 QLDKLRKTNV 270 (447)
T ss_pred HHHHHHhhhh
Confidence 3346666664
No 209
>KOG3119|consensus
Probab=71.01 E-value=20 Score=33.05 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
..++.||.++....+++.....|. .-..+..|+.+||.|. +.||.+++.||+|+..|.+++...
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~-------------~~~e~~~r~~~leken---~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQ-------------KEDEMAHRVAELEKEN---EALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHH-------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666655555555444422 2255678888888664 577888888999998888887653
No 210
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.67 E-value=22 Score=34.59 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+.+.+.+.+.|+.+..+..+++.+++..-+ ...++ +.|-++|..+|.++|++++.+++
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~--~~~~l-~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRKGE--DAEAL-IAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666555322111 11122 44566778888888888886654
No 211
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=70.58 E-value=6.6 Score=29.81 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhcccccch
Q psy9550 229 RTMERKLSEMEVELK-ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 229 RaLERKiSEmEEELK-~L~~LRadNQRLKDENgAL 262 (271)
+.+|+-|.=|++|=. .|..|-+|+++||.+|.-|
T Consensus 6 ~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 6 QSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 457888888888866 6999999999999999876
No 212
>KOG3433|consensus
Probab=70.47 E-value=25 Score=32.39 Aligned_cols=67 Identities=15% Similarity=0.315 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERR-TMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERR-aLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
+.-.+.|..+|++..+..+.+....|+.-..--|..||. +|+.++.-+.+ +++.||.|..++++=++
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk---~~e~lr~el~k~~e~dp 147 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK---ILESLRWELAKIQETDP 147 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCH
Confidence 444566777777777777777766765433333344444 57777766655 56677777776665544
No 213
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.22 E-value=45 Score=29.16 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q psy9550 245 LDQFKKENQ 253 (271)
Q Consensus 245 L~~LRadNQ 253 (271)
|.+.+.+.+
T Consensus 122 l~~~~~e~~ 130 (201)
T PF12072_consen 122 LEEREEELE 130 (201)
T ss_pred HHHHHHHHH
Confidence 444443333
No 214
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.22 E-value=31 Score=36.43 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEE 206 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~ 206 (271)
+..-++.+.|++.|+.+|+.+..
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 442 KRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 215
>KOG0995|consensus
Probab=70.17 E-value=32 Score=35.92 Aligned_cols=61 Identities=26% Similarity=0.377 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQE--KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~E--krERRaLERKiSEmEEELK~L 245 (271)
+..+..+.|.++--.+++.++.+..+||.++++- +..++| ..||.+|+|-+..|+-++..|
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666677777777777642 333332 578888999888877666444
No 216
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=70.00 E-value=13 Score=31.63 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLR-ETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 186 LYE~~k~ENErLk-~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
-|+.++.|.+.|+ .++-+....+.+++..-+ -++-....+.+...+|++|.++|+.|...
T Consensus 5 g~~~l~~el~~l~~~~rp~i~~~i~~ar~~gdl~enaey~aak~~q~~~e~ri~~le~~l~~a 67 (151)
T COG0782 5 GFRKLKEELEYLKPVERPEIVEEIADARELGDLSENAEYRAAKEEQAFIERRIRLLEELLRNA 67 (151)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHccchhhChhhHHHHHHhcccHHHHHHHHHHhcCc
Confidence 4566677777777 455666667777765433 34555556889999999999999988743
No 217
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=69.95 E-value=28 Score=30.40 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
.++|.++.|.++|+.+|+++..++.++=.
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~ 48 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIE 48 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999988887643
No 218
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.94 E-value=31 Score=33.06 Aligned_cols=12 Identities=33% Similarity=0.138 Sum_probs=9.6
Q ss_pred ccccchhhhhhc
Q psy9550 257 DENGALIRVISK 268 (271)
Q Consensus 257 DENgALIRVISK 268 (271)
+-+.+-+|||+.
T Consensus 404 ~~~~~n~rvIs~ 415 (458)
T COG3206 404 ASPIGNARVISP 415 (458)
T ss_pred cCCCCceeEecc
Confidence 668888888875
No 219
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.83 E-value=49 Score=28.51 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk 212 (271)
.+.+.+.+-|+..+..++.+|....
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 3455556666666655555554443
No 220
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=69.66 E-value=22 Score=31.69 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.|-++||.+|.++++|+..||..|-
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~ 53 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLA 53 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457799999999999999976653
No 221
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=69.53 E-value=50 Score=29.08 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy9550 236 SEMEVELKELDQFKKENQR 254 (271)
Q Consensus 236 SEmEEELK~L~~LRadNQR 254 (271)
.||||.++.|+.|.+-..+
T Consensus 125 ~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 125 REMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666655544
No 222
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.41 E-value=15 Score=34.36 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+.+..+.+|++++.+|.++...|+. ..+.+. ..|+..|+.++..++.-|....+|
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~-~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEA-QKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccHHHH
Confidence 3344444444444444444444331 112222 456777788887777777655444
No 223
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=69.19 E-value=42 Score=24.47 Aligned_cols=65 Identities=28% Similarity=0.481 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccc
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLKDE 258 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLKDE 258 (271)
..+.+.++..|..++..+.+++..-.+. |.... .+ -.++++|.+|-.+++ ...+++...+.|+..
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~-l~~~~-~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKI-LSSPD-QD-SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665554433321 11111 11 445566666666655 334455555555444
No 224
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=69.15 E-value=14 Score=38.52 Aligned_cols=65 Identities=32% Similarity=0.500 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchh
Q psy9550 188 EESQAELSRLRETLSKTEEELNQ-VKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~q-lk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALI 263 (271)
.++-.+|.|||++|...+.++++ ++.. .+-+. .-||..||..|-.|-+||+ ..|-+|||||--|.
T Consensus 522 D~L~E~N~RLKE~l~~~EN~l~~E~~~k----~i~~~-d~~r~~~E~Ni~~Lk~eL~------~~~~KL~e~~~~~~ 587 (669)
T COG5244 522 DRLNEENIRLKEVLVQKENMLTEETKIK----IIIGR-DLERKTLEENIKTLKVELN------NKNNKLKEENFNLV 587 (669)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhh----hhhhh-HHHHHHHHHHHHHHHHHHh------hhhhhhhhhccccc
Confidence 34556777888877777666553 2211 22222 3366677777766666554 55688999887663
No 225
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=69.13 E-value=21 Score=29.80 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEE 207 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~E 207 (271)
.++.|+|+++..+...+..
T Consensus 71 ALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667666666555544
No 226
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.13 E-value=28 Score=33.79 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+-+.+.+.+.+.|+.+..+..+++.+++..-+.. ..++ +.+-+.|-.+|.++|++++.+++
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~-~~~l-~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDK-IEEI-KKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555433221110 1122 33456667777777777776554
No 227
>PF15456 Uds1: Up-regulated During Septation
Probab=69.11 E-value=46 Score=27.94 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hh------------------------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQVKATY--SK------------------------NSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~L--Ek------------------------~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
.|.+.||.++.-++..+..++..| |. ..+.+. .-|..++++||.|+..||-.+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~-eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKA-EEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 456667777776666666665432 20 012222 457788999999999999999
Q ss_pred HHHHHhhhh
Q psy9550 246 DQFKKENQR 254 (271)
Q Consensus 246 ~~LRadNQR 254 (271)
++=.++.++
T Consensus 101 e~R~~~~~~ 109 (124)
T PF15456_consen 101 ENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHH
Confidence 887777654
No 228
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.02 E-value=55 Score=27.55 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy9550 230 TMERKLSEME 239 (271)
Q Consensus 230 aLERKiSEmE 239 (271)
.|+.+++.+|
T Consensus 83 ~l~~r~~k~~ 92 (107)
T PF09304_consen 83 ELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 229
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.99 E-value=22 Score=37.95 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIR 264 (271)
|-.||.||.|+.. ..++++.||.||.+
T Consensus 87 ~~~le~~l~e~~~----------~l~~~~~e~~~l~~ 113 (769)
T PF05911_consen 87 KSELEAKLAELSK----------RLAESAAENSALSK 113 (769)
T ss_pred HHHHHHHHHHHHH----------HHHHHHhhhHHHHH
Confidence 3455555555544 44667777777776
No 230
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.97 E-value=48 Score=31.23 Aligned_cols=20 Identities=50% Similarity=0.836 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~ 246 (271)
|+..+++.|.++|+|++.|+
T Consensus 72 e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 72 EREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 231
>PLN02943 aminoacyl-tRNA ligase
Probab=68.96 E-value=15 Score=39.24 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVK-ATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk-~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.+-+|+++.-+++..|.++|+.+|+.++..|+.-. .+--...+-+.|+.-...++.++..+++.|+.|..
T Consensus 882 ~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 882 ADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999988543 22223334445566666888889999888888764
No 232
>KOG4643|consensus
Probab=68.92 E-value=20 Score=39.83 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcc
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRLKD 257 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRLKD 257 (271)
-||.=-|++++.|.-|.++-+=++.||.-++++-|... +|. |--.|..|+..|+.|.. ++++|-.||+.|.-
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t-les---eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT-LES---EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC-hHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 37778888888888888888888888888887766532 222 44456666666666653 45556666666655
Q ss_pred cccch
Q psy9550 258 ENGAL 262 (271)
Q Consensus 258 ENgAL 262 (271)
++++|
T Consensus 337 q~eqL 341 (1195)
T KOG4643|consen 337 QKEQL 341 (1195)
T ss_pred HHHHh
Confidence 55444
No 233
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.90 E-value=89 Score=30.49 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy9550 200 TLSKTEEELNQVKATYSK 217 (271)
Q Consensus 200 ~L~e~~~El~qlk~~LEk 217 (271)
+|++-+-|+.+||.||-|
T Consensus 83 ~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 344445567777777653
No 234
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=68.58 E-value=13 Score=29.72 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNS-LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S-LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
..|.+...+.-++=..|+++---|.+++.-|.-.. -......-...|+.++.++++++..|+.++...+.+.
T Consensus 37 R~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T cd04784 37 RLYDEEHLERLLFIRRCRSLDMSLDEIRTLLQLQDDPEASCAEVNALIDEHLAHVRARIAELQALEKQLQALR 109 (127)
T ss_pred eecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666555555555666666666777765554110 0000012245577777777777777777776665554
No 235
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=68.58 E-value=17 Score=33.29 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=32.3
Q ss_pred CCCCCCcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 175 PNENGELDYK--------KLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 175 ~~e~~~~DYK--------kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+.+...-.|- +..++++.||++|..+|...+.|++.+|.+++.
T Consensus 100 ~~e~Pse~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~ 150 (200)
T PF07412_consen 100 SSEGPSENYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEE 150 (200)
T ss_dssp -SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666772 344567889999999999999999999876653
No 236
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=68.57 E-value=59 Score=29.13 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccc----cchhhhhhcc
Q psy9550 238 MEVELKELDQFKKENQRLKDEN----GALIRVISKL 269 (271)
Q Consensus 238 mEEELK~L~~LRadNQRLKDEN----gALIRVISKL 269 (271)
||.-|++|..-|.+++.+-|++ .|=||-.+|+
T Consensus 86 l~aKL~aLKAak~~i~~~~d~d~~~~k~~Iw~eak~ 121 (160)
T PF03978_consen 86 LEAKLAALKAAKQKIEGIQDKDQECAKAKIWTEAKL 121 (160)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHh
Confidence 4555667777777777776654 5667766654
No 237
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=68.42 E-value=35 Score=29.40 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhcc------hh-HHHHHHHHHHHHHHHHHH
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATY----------SKNS------LS-EQEKRERRTMERKLSEME 239 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L----------Ek~S------Ll-E~EkrERRaLERKiSEmE 239 (271)
.-++|.-||....-|++|..++--+++.+..++... ++.+ ++ .+ .+||+.||..+-++|
T Consensus 3 ~nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqL-EkeK~~Le~qlk~~e 78 (129)
T PF15372_consen 3 GNEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQL-EKEKRSLENQLKDYE 78 (129)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998887532 2211 22 33 468888888887754
No 238
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=68.37 E-value=31 Score=25.38 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
...++++++...+.+.++.++++...++..+
T Consensus 48 ~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~l 78 (125)
T PF13801_consen 48 AKLRALMDEFRQEMRALRQELRAARQELRAL 78 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777877777777766544
No 239
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=68.30 E-value=21 Score=33.11 Aligned_cols=62 Identities=27% Similarity=0.544 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccc
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLKDENG 260 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLKDENg 260 (271)
+++|++ |.++|+.++.+ ...+-.+-.++|++.++..+..|.+|++ +...-..=.+||+.|-.
T Consensus 26 ~~~Y~~---ei~~L~~~i~~------------~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~ 88 (298)
T PF11262_consen 26 KELYDE---EIERLEKEISQ------------MSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKD 88 (298)
T ss_pred HHHHHH---HHHHHHHHHHH------------hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578876 45566666655 1111222336788888888888887777 44455555556655543
No 240
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=67.89 E-value=26 Score=28.53 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
-+-..+|++...+.+.+.-.+.+.+.-+.-.+.+.++-. -.++ ..+-.++...|.+|..+|.....+|.--+ |
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i-~~~i~~~k~~ie~lk~~L~~ak~~r~~k~----e 116 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEI-EQEIEQAKKEIEELKEELEEAKRVRQNKE----E 116 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 566788999999999999888888887776666666321 1122 22344667778899988888888775433 7
Q ss_pred ccchhhhhhcc
Q psy9550 259 NGALIRVISKL 269 (271)
Q Consensus 259 NgALIRVISKL 269 (271)
--+|-++|.+.
T Consensus 117 yd~La~~I~~~ 127 (139)
T PF05615_consen 117 YDALAKKINSQ 127 (139)
T ss_pred HHHHHHHHhcC
Confidence 78888888765
No 241
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=67.83 E-value=23 Score=28.25 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadN 252 (271)
.+.|+|+.+|+.++.|-.+++..|.-..--.+..+=.--+|.-..+.++-+-.|..|..+|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~~~~~~~n~R~n~~ye~Lk~q~~~vM~dl~~l~~~~ 79 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILALYTEGSLNNRPNPEYEMLKSQHEEVMSDLHKLEMEI 79 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998876211111111112223333344444455555555544
No 242
>KOG0982|consensus
Probab=67.76 E-value=38 Score=34.72 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=9.2
Q ss_pred cCCCccccCCCCC
Q psy9550 63 SGYGGLTLPSSYS 75 (271)
Q Consensus 63 ~gyg~~~lps~~~ 75 (271)
.|||+..+|--++
T Consensus 72 ~glg~nsfp~~ys 84 (502)
T KOG0982|consen 72 MGLGLNSFPKRYS 84 (502)
T ss_pred cCcccccchHHHH
Confidence 5788888886553
No 243
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.73 E-value=38 Score=30.11 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
-|+.|...++.++.+++.+|.+++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie 160 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIE 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777776655
No 244
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=67.69 E-value=45 Score=33.75 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.++|..++++++.+++++..+|.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555554443
No 245
>KOG3231|consensus
Probab=67.62 E-value=16 Score=33.41 Aligned_cols=22 Identities=36% Similarity=0.776 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~ 246 (271)
.++||+||++--+||.|+|-+.
T Consensus 28 erdRr~me~~Ek~LElEIkk~A 49 (208)
T KOG3231|consen 28 ERDRRAMEKQEKQLELEIKKMA 49 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999889998886543
No 246
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=67.19 E-value=15 Score=29.41 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|.+...+.-++-..|+++---|.+++.-|+-...... ..-+..|+.++.++++++..|..+++..+.+.
T Consensus 38 ~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 38 RYPEETVTRLRFIKRAQELGFTLDEIAELLELDDGTDC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred ecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444455566666667777766653211111 12245567788888888888877777666554
No 247
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=66.90 E-value=69 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
|..-+.+...+...|+.++...+.++.++...
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777766666543
No 248
>KOG0996|consensus
Probab=66.89 E-value=26 Score=39.44 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
++++ .++...+|.++..|.++++-+..-.+|++.
T Consensus 944 l~~l-e~~~~~~e~e~~~L~e~~~~~~~k~~E~~~ 977 (1293)
T KOG0996|consen 944 LSEL-EREIEDTEKELDDLTEELKGLEEKAAELEK 977 (1293)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5566 456666676666666666666655555543
No 249
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=66.67 E-value=5.7 Score=40.27 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|.+.|| ||+++++||.+||++++
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhc
Confidence 334444 66666666666655544
No 250
>KOG3215|consensus
Probab=66.46 E-value=41 Score=31.46 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 226 RERRTMERKLSEM---EVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 226 rERRaLERKiSEm---EEELK~L~~LRadNQRLKDENgALIR 264 (271)
.|-++|-.=|+++ -|-.|+|..|+.|..+|.++|-++=+
T Consensus 130 qe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~ 171 (222)
T KOG3215|consen 130 QEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTET 171 (222)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444444444443 35567777778888888777776543
No 251
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=66.35 E-value=8.8 Score=27.07 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhcccccchh
Q psy9550 243 KELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 243 K~L~~LRadNQRLKDENgALI 263 (271)
..+.+|..+|+.|+.++.+|-
T Consensus 32 ~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355666677777777776663
No 252
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=66.26 E-value=16 Score=28.83 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
.|.....+.-++-..|+++---+.+++.-++... -... ..-...|++++.+++++++.|..++...+.+.+
T Consensus 38 ~Y~~~~i~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 38 LYGEADLARLRFIRRAQALGFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred cCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444444444455666556667765554210 0011 112466788888888888888888877766553
No 253
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=66.21 E-value=38 Score=34.87 Aligned_cols=38 Identities=13% Similarity=0.338 Sum_probs=27.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+...|+.-+++.....+++...+.+++.++..++.+++
T Consensus 164 g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~ 201 (1164)
T TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE 201 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777777777665554
No 254
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=66.12 E-value=44 Score=28.71 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhhcccccch
Q psy9550 242 LKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgAL 262 (271)
|+.+..|..|--.|||||..|
T Consensus 95 Lq~i~~L~nE~n~L~eEN~~L 115 (120)
T PF10482_consen 95 LQHIFELTNEMNTLKEENKKL 115 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 445555666666666666555
No 255
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.07 E-value=50 Score=27.10 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
++....+.+..+++.++..+...+.++++
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~k 135 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEK 135 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666665553
No 256
>KOG4378|consensus
Probab=66.01 E-value=18 Score=37.77 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
-+|-..|-.++.|-|-..++|.-||.|||+|..
T Consensus 639 ~~Ems~llery~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 639 MREMSRLLERYNENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhc
Confidence 345566667777777777799999999999863
No 257
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=65.99 E-value=65 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.++..|-.+-..+|+.++.++..+...|++
T Consensus 47 ~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 47 ADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444445566666666666666654
No 258
>PRK11281 hypothetical protein; Provisional
Probab=65.89 E-value=21 Score=39.40 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cch-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK--NSL-----SEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SL-----lE~EkrERRaLERKiSEmEEELK~L 245 (271)
++.+++++.|+.+++++.+++.+++.+|++ ... .....---.+||.++++.|.+|...
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~ 140 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNA 140 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888877763 100 0011111245788887777766643
No 259
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.82 E-value=28 Score=27.99 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.3
Q ss_pred HHHHHhhhhhcccccc
Q psy9550 246 DQFKKENQRLKDENGA 261 (271)
Q Consensus 246 ~~LRadNQRLKDENgA 261 (271)
..|..+|++||+|..+
T Consensus 49 ~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 49 EELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4477788888887654
No 260
>smart00338 BRLZ basic region leucin zipper.
Probab=65.70 E-value=15 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~ 247 (271)
.|...|..++..|+.|+..|.+
T Consensus 40 ~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 40 AENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666655543
No 261
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.56 E-value=52 Score=32.25 Aligned_cols=22 Identities=41% Similarity=0.666 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~ 247 (271)
.+.+.+++++.+++++|..|++
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776644
No 262
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.45 E-value=42 Score=26.95 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhhcccccc
Q psy9550 244 ELDQFKKENQRLKDENGA 261 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgA 261 (271)
..+.|..+|+.||.|..+
T Consensus 47 ~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 47 QREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566777777777654
No 263
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.40 E-value=63 Score=28.79 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELKEL 245 (271)
Q Consensus 230 aLERKiSEmEEELK~L 245 (271)
++...+..|++|++.|
T Consensus 168 ~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 168 EAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444333
No 264
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.37 E-value=27 Score=37.82 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
|..|..+.||.+|...+++.+++|.+.|.+.
T Consensus 462 k~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~ 492 (861)
T PF15254_consen 462 KVIENQKEENKRLRKMFQEKDQELLENKQQF 492 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455556778888888888888777776543
No 265
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.33 E-value=2.5 Score=41.76 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcccccch
Q psy9550 242 LKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgAL 262 (271)
+.++.+||.||.+||.||-+|
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~L 51 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDL 51 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHH
No 266
>KOG0243|consensus
Probab=65.29 E-value=34 Score=37.96 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKT 204 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~ 204 (271)
-|+|..+.-.|.||||+.|..+
T Consensus 402 K~~llKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 402 KKTLLKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888999999777544
No 267
>PLN02320 seryl-tRNA synthetase
Probab=64.91 E-value=37 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~ 247 (271)
|-+.|-.+|.+||++++.+++
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777765543
No 268
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=64.90 E-value=32 Score=32.20 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHHHHHH
Q psy9550 180 ELDYKKLYEESQAELSR 196 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENEr 196 (271)
++||+|-|.++++|..+
T Consensus 117 dKd~~k~~kk~R~elKk 133 (231)
T cd07643 117 DKDHAKEYKKARQEIKK 133 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777888777776553
No 269
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=64.89 E-value=20 Score=38.92 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNS-----LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~S-----LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
+...|.+||..+|++++.|+..+...|.+.. .-+.-.+++..+ +++.+.|++|++..++|+.
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-------~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-------EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999998643 334444443333 3445555555556666654
No 270
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.81 E-value=35 Score=29.21 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+=|+..+.+.+.+..++..++.||.+...+|+
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~ 44 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIK 44 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777776665
No 271
>KOG3990|consensus
Probab=64.79 E-value=16 Score=35.19 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEEL-------NQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El-------~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
..++.|..+|+..|.+.++++ .+|++.-| .--++|+..+...+.=+.+-|+-||++..|+
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e--~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKE--YQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566667776665555443 33333211 1245666666555555566666677777766
No 272
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=64.46 E-value=77 Score=25.82 Aligned_cols=48 Identities=27% Similarity=0.289 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 196 RLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK 243 (271)
......++...+++.+...+.|. .+.++.++|+..++.--.+++.++.
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~ 91 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIE 91 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666554 4667888888877777777666554
No 273
>PRK10698 phage shock protein PspA; Provisional
Probab=64.45 E-value=59 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELK----ELDQFKKENQRLK 256 (271)
Q Consensus 227 ERRaLERKiSEmEEELK----~L~~LRadNQRLK 256 (271)
+|...+.++..|+.++. .+.+|+.+.++|+
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~ 126 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777665 3445555555554
No 274
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.38 E-value=29 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhcccccchhhhh
Q psy9550 232 ERKLSEMEVELKELDQFKKE-NQRLKDENGALIRVI 266 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRad-NQRLKDENgALIRVI 266 (271)
...+.+||+++|.....=.| -+-|..-||...|.|
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~DmEa~LPkkNGlyL~li 102 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFDMEAFLPKKNGLYLRLI 102 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCCCCCCccccee
Confidence 34455555555543321111 155655699888754
No 275
>PRK01156 chromosome segregation protein; Provisional
Probab=64.23 E-value=50 Score=34.18 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETL 201 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L 201 (271)
-.|+++|+.++.....++.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~ei 182 (895)
T PRK01156 162 NSLERNYDKLKDVIDMLRAEI 182 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777776665555444433
No 276
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=64.14 E-value=12 Score=34.20 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchh
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALI 263 (271)
.+-|.||+.-|.|-|.=-+.+..+..++.+||+||.-|.
T Consensus 114 E~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~ 152 (200)
T PF07412_consen 114 EERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELK 152 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666644566666666666666666554
No 277
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=64.07 E-value=17 Score=29.44 Aligned_cols=69 Identities=7% Similarity=0.129 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
.|.+...+.=++=..|+++---|.+++.-|+-. .-......-+..|+.++.+++++++.|..++...+.
T Consensus 38 ~Y~~~~l~~l~~I~~lr~lG~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 38 VYTVGHVERLAFIRNCRTLDMSLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444455666666677776555410 000000112234555555555555555555544443
No 278
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.04 E-value=35 Score=35.11 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
+--+-+..+.++|+.+|++++.++.+-|.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777788777777777664
No 279
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=63.89 E-value=2.3 Score=43.34 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhcccccchh
Q psy9550 240 VELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 240 EELK~L~~LRadNQRLKDENgALI 263 (271)
+-|+.+.+||..++-|++.|..|+
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~ 345 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLL 345 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 280
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=63.81 E-value=17 Score=30.49 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
-.||++|-++..-+.-|-.+|..+.+.|+++..+|
T Consensus 32 EkYkqly~eElk~r~SLs~kL~ktnerLaevstkL 66 (111)
T PF12001_consen 32 EKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKL 66 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 47999999999999999999999999999887654
No 281
>PRK01156 chromosome segregation protein; Provisional
Probab=63.74 E-value=53 Score=34.01 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.9
Q ss_pred cCCcccC
Q psy9550 58 YGGTSSG 64 (271)
Q Consensus 58 yggt~~g 64 (271)
+|.+++|
T Consensus 29 ~G~NGsG 35 (895)
T PRK01156 29 TGKNGAG 35 (895)
T ss_pred ECCCCCC
Confidence 3444444
No 282
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=63.71 E-value=58 Score=31.58 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
|.--|.|++.|..++++-+.+..
T Consensus 193 K~KIR~lq~~L~~~~~~~~~~~~ 215 (342)
T PF06632_consen 193 KAKIRELQRLLASAKEEEKSPKQ 215 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhccccchhh
Confidence 55567777777777776554433
No 283
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=63.70 E-value=20 Score=28.41 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLS--EQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLl--E~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
+|+ .|.+.-.+.=+.=..|+++.--+.+++.-++..... +....=+..|++++.+++++++.|+++++..+.+.
T Consensus 34 ~yR-~Y~~~d~~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 34 NYR-VYDAQHVECLRFIKEARQLGFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred Cce-eeCHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455444444444455666666677777655532211 12223357788888888888888888877765543
No 284
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.69 E-value=61 Score=29.07 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+|.++ .+-+..+|++|.+||+|++.+.
T Consensus 72 ~l~~~-~~~k~~qe~eI~~Le~e~~~~~ 98 (206)
T PF14988_consen 72 ALKEF-RRLKEQQEREIQTLEEELEKMR 98 (206)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 4556777888888888877543
No 285
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=63.63 E-value=31 Score=31.60 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKE 244 (271)
Q Consensus 228 RRaLERKiSEmEEELK~ 244 (271)
...|+.+...+|+.++.
T Consensus 231 ~~~le~~~~~~ee~~~~ 247 (297)
T PF02841_consen 231 EQMLEQQERSYEEHIKQ 247 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 286
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=63.61 E-value=2.3 Score=42.96 Aligned_cols=47 Identities=30% Similarity=0.489 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hcchhHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS-------------KNSLSEQEKRERRTMERK 234 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-------------k~SLlE~EkrERRaLERK 234 (271)
++||+ |.-.||++|+...+.|.+...+|. ++.|.+-|++=|+.-|.|
T Consensus 372 e~YEq---EI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eK 431 (495)
T PF12004_consen 372 EKYEQ---EIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEK 431 (495)
T ss_dssp ---------------------------------------------------------------
T ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhh
Confidence 35765 777888777777666665554432 234556665545544444
No 287
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.47 E-value=44 Score=34.11 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhccc
Q psy9550 226 RERRTMERKLSEMEVELKELD----QFKKENQRLKDE 258 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~----~LRadNQRLKDE 258 (271)
.+++.||-.+--+.-+-|+|+ +||.+-++||.+
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r 194 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667766666777777765 677777777654
No 288
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=63.44 E-value=46 Score=33.02 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.+-. +....++-.|+-+|++++.|+..++.+|+
T Consensus 100 ~~~~~-~sl~~e~a~lk~~l~e~~~El~~l~~~l~ 133 (511)
T PF09787_consen 100 SAKSS-DSLSSELAVLKIRLQELDQELRRLRRQLE 133 (511)
T ss_pred ccccc-ccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 44444555555555555555555554443
No 289
>smart00340 HALZ homeobox associated leucin zipper.
Probab=63.40 E-value=12 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTE 205 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~ 205 (271)
|+-+|.+..||.||+.+|+++.
T Consensus 11 Krcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 11 KRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888887776654
No 290
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.38 E-value=29 Score=30.90 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
....||++|+.++.+++.++.+| ..|...|+.++..+||+-+.|-.+-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~L-------------e~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEEL-------------EKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665555 3456667777777777777666553
No 291
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=63.37 E-value=20 Score=29.57 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNS-LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S-LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
.|.+...+.=++-..++++---|.+++.-|.-.. -... ..-...|++|+.+++++++.|.+++...+.+
T Consensus 38 ~Y~~~~v~~l~~I~~lr~~GfsL~eI~~ll~~~~~~~~~-~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~ 107 (131)
T cd04786 38 DYPPETVWVLEIISSAQQAGFSLDEIRQLLPADASNWQH-DELLAALERKVADIEALEARLAQNKAQLLVL 107 (131)
T ss_pred ecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444444456655555666665554210 0011 1234578999999999999999988776654
No 292
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.32 E-value=28 Score=28.09 Aligned_cols=18 Identities=6% Similarity=0.224 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEEELNQV 211 (271)
Q Consensus 194 NErLk~~L~e~~~El~ql 211 (271)
..+|+.++++.+.++.++
T Consensus 29 ~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 293
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.16 E-value=37 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
+..+|...+.+.+.|..++..++..+.+++..
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~ 42 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTA 42 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777766666543
No 294
>KOG0161|consensus
Probab=63.14 E-value=41 Score=39.48 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~ 247 (271)
++|.||..+.||+..|.++++
T Consensus 1520 ~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1520 EKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777666665554
No 295
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.00 E-value=61 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
.-|+.+..|.+.|+...+..+..+++.
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 296
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.96 E-value=45 Score=33.40 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9550 199 ETLSKTEEELNQVKATYS 216 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LE 216 (271)
..|..++.+..+++.+++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 317 DFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 297
>PRK11519 tyrosine kinase; Provisional
Probab=62.86 E-value=48 Score=34.11 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9550 196 RLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~L 215 (271)
=|.++|++.+.+|.++..+|
T Consensus 271 fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 298
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=62.85 E-value=7.6 Score=28.73 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVELK 243 (271)
Q Consensus 229 RaLERKiSEmEEELK 243 (271)
-+...+|++++.|..
T Consensus 25 ~~a~~rl~~l~~EN~ 39 (52)
T PF12808_consen 25 SAARKRLSKLEGENR 39 (52)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555555543
No 299
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.78 E-value=53 Score=31.00 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRERRTMERKLSE 237 (271)
Q Consensus 220 LlE~EkrERRaLERKiSE 237 (271)
|.++=+.|+..|++++-+
T Consensus 143 l~e~~~~el~~l~~~~q~ 160 (258)
T PF15397_consen 143 LNEMRQMELASLSRKIQE 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555666666666554
No 300
>KOG4797|consensus
Probab=62.77 E-value=56 Score=28.13 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
-|.-+.+.|.|-||+++.++....+.+
T Consensus 60 HLmfAVREEVe~Lk~qI~eL~er~~~L 86 (123)
T KOG4797|consen 60 HLMFAVREEVEVLKEQIRELEERNSAL 86 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577789999999999999988887777
No 301
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=62.77 E-value=17 Score=37.10 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCCCcchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAE---------LSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~E---------NErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
++.-+|++|+=+++... -..||++|..++.+|.+.....++.. +.-+-..|..+|.+||.||..|..
T Consensus 342 ~e~G~D~~~~d~~le~~~~~r~e~~~ek~lKeeI~~lk~~l~~~~~~~~~~~----~~~~~~~~~e~i~~kE~eLe~L~~ 417 (492)
T PF06273_consen 342 QEKGQDWRKIDLELEHRAVDRPETEEEKFLKEEINALKERLEEEEASSEKSK----GSGEEESLREEISQKEKELEKLTR 417 (492)
T ss_pred HHhCcCHHHHHHHhhcccccccccccchhhhhhHHHHHHHHHhhhhhhhhcc----ccccchhHHHHHHHHHHHHHHHHH
Confidence 35568898887655431 12344444444444443332222210 111227788899999999887753
No 302
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.68 E-value=35 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 224 EKRERRTMERKLSEMEVE 241 (271)
Q Consensus 224 EkrERRaLERKiSEmEEE 241 (271)
+..||.+|-..|++|++.
T Consensus 68 ~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 68 VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HhhHHHHHHHHHHHHHhh
Confidence 566777777777777654
No 303
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.65 E-value=36 Score=30.25 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~ 247 (271)
|.+.+|.+|.+||..+-+|++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQR 145 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 555666666666666655544
No 304
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=62.54 E-value=9.5 Score=24.35 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk 212 (271)
|.++||.++.+++.||++.+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777776653
No 305
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.49 E-value=37 Score=30.19 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 196 RLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
-+..+|+..+.+...++..|+++. .-.|--++|++|++.+.||..+..
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~----~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAK----TVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444432 022445668888888887775543
No 306
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.34 E-value=7.9 Score=31.11 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhcccccch
Q psy9550 244 ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgAL 262 (271)
.+.+...||.+|++||.-|
T Consensus 45 evtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445667777777776543
No 307
>KOG2077|consensus
Probab=61.96 E-value=47 Score=35.52 Aligned_cols=70 Identities=27% Similarity=0.328 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------chhHHHH--HHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKN--------------------SLSEQEK--RERRTMERKLSEMEVELKE 244 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--------------------SLlE~Ek--rERRaLERKiSEmEEELK~ 244 (271)
.|..++-..+|.+++.+.++||..+|++++-+ .-.||-+ -||-++..|+-||||.++=
T Consensus 345 lea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrW 424 (832)
T KOG2077|consen 345 LEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRW 424 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 46667777888888889999999888776410 1112211 2667777788888888773
Q ss_pred HHHHHHhhhhhcccccc
Q psy9550 245 LDQFKKENQRLKDENGA 261 (271)
Q Consensus 245 L~~LRadNQRLKDENgA 261 (271)
+|-+|-+-||.|
T Consensus 425 -----TEMiRAsre~p~ 436 (832)
T KOG2077|consen 425 -----TEMIRASRENPA 436 (832)
T ss_pred -----HHHHHHhhcCch
Confidence 333444455544
No 308
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.53 E-value=42 Score=35.87 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhc
Q psy9550 225 KRERRTMERKLSE-----MEVELKELDQFKKENQRLK 256 (271)
Q Consensus 225 krERRaLERKiSE-----mEEELK~L~~LRadNQRLK 256 (271)
+.|-|.|.+|.+| .-|-+|-+.+|.+|=|||+
T Consensus 167 r~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr 203 (769)
T PF05911_consen 167 RNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666 3466888899999999986
No 309
>PF14282 FlxA: FlxA-like protein
Probab=61.52 E-value=84 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.423 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQE-KRERRTMERKLSEMEVELKELDQFKKENQ 253 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~E-krERRaLERKiSEmEEELK~L~~LRadNQ 253 (271)
-...+.|+.++..++.+|.++... ..+.+=+ ..-+.+|...|..||-+|-+|..-+++-.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~---~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD---SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888877542 1222222 23345677778888887777766555443
No 310
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.50 E-value=68 Score=30.73 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=6.6
Q ss_pred ccchhhhhhc
Q psy9550 259 NGALIRVISK 268 (271)
Q Consensus 259 NgALIRVISK 268 (271)
.+.-||||..
T Consensus 392 ~~~~i~vi~~ 401 (498)
T TIGR03007 392 KAVSFRIIDP 401 (498)
T ss_pred CCceEEEeCC
Confidence 4566888863
No 311
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=61.37 E-value=30 Score=34.10 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQV-----------------KATYSKNSLS-EQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~ql-----------------k~~LEk~SLl-E~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
++++-.|..|+.+++=+|+|..=| =.+||-+.|. -.-..--|-+.|++.||.||-+.|+.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777766666653322 1223321111 11123456677888888888777654
No 312
>PLN02678 seryl-tRNA synthetase
Probab=61.34 E-value=41 Score=33.53 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+.+.+.+.+.+.|+.+.....+++.+++..-+ ...++ ..|-+.|..+|.+||++++.++
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~--~~~~l-~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE--DATEL-IAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--cHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554332211 11122 2344556666666666666543
No 313
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=61.30 E-value=12 Score=36.22 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQ 210 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~q 210 (271)
|..+++||++||+++.+++.++.+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677776666665555443
No 314
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=61.29 E-value=59 Score=27.10 Aligned_cols=10 Identities=40% Similarity=0.428 Sum_probs=5.3
Q ss_pred CcchHHHHHH
Q psy9550 180 ELDYKKLYEE 189 (271)
Q Consensus 180 ~~DYKkLYE~ 189 (271)
-.+.++-.|.
T Consensus 25 ll~~~~~LE~ 34 (160)
T PF13094_consen 25 LLDRKRALER 34 (160)
T ss_pred HHHHHHHHHH
Confidence 3555555554
No 315
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.16 E-value=27 Score=33.91 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 236 SEMEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 236 SEmEEELK~L~~LRadNQRLKDENgALIR 264 (271)
.-.|+|......|+-|||+|-+.=-.|-|
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 33455555566666666665554444433
No 316
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=61.02 E-value=90 Score=27.06 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhhcccccchh
Q psy9550 232 ERKLSEMEVELK-ELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 232 ERKiSEmEEELK-~L~~LRadNQRLKDENgALI 263 (271)
+.++...|++|. .-+...+=|..||+|=..||
T Consensus 148 ~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~ 180 (216)
T cd07599 148 EKQLAKLERKLEEAKEEYEALNELLKSELPKLL 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456777788887 45667788999999877665
No 317
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.02 E-value=42 Score=30.73 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELN 209 (271)
Q Consensus 193 ENErLk~~L~e~~~El~ 209 (271)
|.-=||.+|.+++.|++
T Consensus 11 EIsLLKqQLke~q~E~~ 27 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVN 27 (202)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34456777777766554
No 318
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.99 E-value=90 Score=29.69 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
+++--+.++..||.+=.-+++++..|..|..||+-+
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~ 184 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQ 184 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456788888888888888888888888877543
No 319
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=60.91 E-value=2.8 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
|+.+..+|..|+.++.+++.++.+++
T Consensus 34 ~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 34 LERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34445556666665555555555443
No 320
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=60.90 E-value=61 Score=27.39 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELK 243 (271)
Q Consensus 231 LERKiSEmEEELK 243 (271)
||..+.+.+.-|+
T Consensus 85 LEeele~ae~~L~ 97 (143)
T PF12718_consen 85 LEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 321
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.88 E-value=44 Score=33.99 Aligned_cols=73 Identities=10% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhc---------chhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRET--------------LSKTEEELNQVKATYSKN---------SLSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 186 LYE~~k~ENErLk~~--------------L~e~~~El~qlk~~LEk~---------SLlE~EkrERRaLERKiSEmEEEL 242 (271)
++.+.+.+..+|+.+ +.+++.++++++.+++.. .-.+..+....+|++++.+++.++
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhccc
Q psy9550 243 KELDQFKKENQRLKDE 258 (271)
Q Consensus 243 K~L~~LRadNQRLKDE 258 (271)
+.+.+...+-.+|+-|
T Consensus 369 ~~~~~~~~e~~~L~Re 384 (754)
T TIGR01005 369 AQAGEQQVDLDALQRD 384 (754)
T ss_pred HhCcHhHHHHHHHHHH
No 322
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=60.83 E-value=61 Score=30.92 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKT 204 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~ 204 (271)
|..-.+.+..+|..+|+.+
T Consensus 86 L~~lgkeelqkl~~eLe~v 104 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMV 104 (268)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555443
No 323
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=60.56 E-value=17 Score=30.31 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~ 246 (271)
+||+.++|+|-.++.+|..+.
T Consensus 59 fERkKa~R~lkql~k~l~~~~ 79 (114)
T PF10153_consen 59 FERKKATRKLKQLEKKLEEAE 79 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 699999999999998887654
No 324
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=60.40 E-value=74 Score=29.65 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=30.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLS 221 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLl 221 (271)
++.||...+++++++.++.+.+++.++.++...+..+++.+.+
T Consensus 95 d~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS 137 (385)
T PRK09578 95 DPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVS 137 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567888888888888888777777777776666655554443
No 325
>KOG0288|consensus
Probab=60.01 E-value=30 Score=35.19 Aligned_cols=6 Identities=33% Similarity=0.301 Sum_probs=2.3
Q ss_pred HHHHhh
Q psy9550 247 QFKKEN 252 (271)
Q Consensus 247 ~LRadN 252 (271)
.+.+||
T Consensus 85 ~~~~en 90 (459)
T KOG0288|consen 85 VLIAEN 90 (459)
T ss_pred HHHHHH
Confidence 333333
No 326
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=59.81 E-value=23 Score=28.84 Aligned_cols=73 Identities=26% Similarity=0.334 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSE-QEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE-~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
-+| .+|.+.-.+.=++-..|+++---|.+++.-|+.....+ .-..-+..|+.++.++|+++..|..+++..+.
T Consensus 34 ~gy-R~Y~~~~~~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (133)
T cd04787 34 NGY-RLYSEKDLSRLRFILSARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQ 107 (133)
T ss_pred CCe-eeCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 47776666666666667776666777776665321100 00122456778888888888888777766543
No 327
>KOG4593|consensus
Probab=59.49 E-value=50 Score=35.35 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
++.+.+..+|.++|...+.+...+++.++...+-.-++-. |..-|+.|+.++++=.-.+..|..+|.+|+.+
T Consensus 243 ~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~Lqe---E~e~Lqskl~~~~~l~~~~~~LELeN~~l~tk 314 (716)
T KOG4593|consen 243 NKNMKDQLQELEELERALSQLREELATLRENRETVGLLQE---ELEGLQSKLGRLEKLQSTLLGLELENEDLLTK 314 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 328
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=59.48 E-value=22 Score=28.67 Aligned_cols=74 Identities=15% Similarity=0.304 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQE-KRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~E-krERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
+| .+|.+...+.=++-..|+++---|++++.-++-..--+.. ..-+..|+.++.++|++++.|+.++...+.+.
T Consensus 35 g~-R~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 35 GY-RLYGAAHVERLRFIRRARDLGFSLEEIRALLALSDRPDRSCAEADAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred Cc-cccCHHHHHHHHHHHHHHHCCCCHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4576655555555556666666677777555411000000 11134466677777777777777666655544
No 329
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.34 E-value=92 Score=27.92 Aligned_cols=66 Identities=20% Similarity=0.373 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRL----RETLSKTEEELNQVKATYSKN--------SLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 185 kLYE~~k~ENErL----k~~L~e~~~El~qlk~~LEk~--------SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
+.|..-..+|+.| ++.|.+....|.+++..|+.+ .|+.....--+.+++|+.+++++-.++.++=.
T Consensus 167 ~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 167 KWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444 444555666677776666532 24444344444556666666666665554433
No 330
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=59.34 E-value=23 Score=29.08 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy9550 192 AELSRLRETL 201 (271)
Q Consensus 192 ~ENErLk~~L 201 (271)
...++||.+|
T Consensus 72 EqL~~Lk~kl 81 (100)
T PF04568_consen 72 EQLKKLKEKL 81 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 331
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=59.28 E-value=29 Score=27.04 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
..|.+.-.+.=+.-..|+++---+.+++.-++... ....|+.++.+++++++.|.+.++..+.
T Consensus 37 R~Y~~~dl~~l~~I~~l~~~G~~l~ei~~~~~~~~-------~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 37 RLYSEADLSRLEKIVFLQAGGLPLEEIAGCLAQPH-------VQAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred eeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554444444444455555555667765554322 2455666777777777776666655443
No 332
>KOG0946|consensus
Probab=59.12 E-value=69 Score=35.26 Aligned_cols=79 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------hcchhHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS------------------------------KNSLSEQEKRERRTMER 233 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE------------------------------k~SLlE~EkrERRaLER 233 (271)
|..-++...|||+|.+++++...+.++++.+++ .+++.|. ++-.+..|.
T Consensus 677 kQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~-k~l~~~q~~ 755 (970)
T KOG0946|consen 677 KQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSEN-KKLENDQEL 755 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchh
Q psy9550 234 KLSEMEVELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 234 KiSEmEEELK~L~~LRadNQRLKDENgALI 263 (271)
=..++++-....+.+|+.-+----++|+++
T Consensus 756 l~~~L~k~~~~~es~k~~~~~a~~~~~~~~ 785 (970)
T KOG0946|consen 756 LTKELNKKNADIESFKATQRSAELSQGSLN 785 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchhh
No 333
>KOG4005|consensus
Probab=58.87 E-value=16 Score=35.03 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 232 ERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
.||-+-|+|=--++.||-.||++|..||--|
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544445555555555555555443
No 334
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=58.85 E-value=28 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
+|.+.-.+.=++-..|+++.--|.+++.-+.... .....+..|+.++.+++++++.|..++...+.+.
T Consensus 37 ~Y~~~~l~~l~~I~~lr~~G~~L~eI~~~l~~~~---~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~~ 104 (120)
T cd04781 37 QYDPQVLDRLALIALGRAAGFSLDEIQAMLSHDG---KPPIDRQLLKAKAAELDQQIQRLQAMRELLRHVA 104 (120)
T ss_pred ecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665444444444556665555777765554321 1123456788999999999999988887665443
No 335
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.77 E-value=77 Score=23.97 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 221 SEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 221 lE~EkrERRaLERKiSEmEEELK~L 245 (271)
-|.|. -.+.|+.+|..|+++++.+
T Consensus 35 qeaE~-rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 35 QEAEK-RNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34433 3677888888888887764
No 336
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.74 E-value=82 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~ql 211 (271)
+++-.....+-+.+..++.++.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 337
>KOG0962|consensus
Probab=58.55 E-value=55 Score=37.16 Aligned_cols=39 Identities=36% Similarity=0.502 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
+.|+ ..|-.-.+++|.|++-.++.|+++-++-.+|.+|.
T Consensus 239 v~e~-e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~ 277 (1294)
T KOG0962|consen 239 VSEL-ENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEH 277 (1294)
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 33455667777777777776666666655555554
No 338
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.47 E-value=91 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQ 210 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~q 210 (271)
.+-+..|+.+.++|..||.+|.......+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~ 52 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKH 52 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 567888999999999998888555444333
No 339
>KOG3647|consensus
Probab=58.41 E-value=37 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchh
Q psy9550 197 LRETLSKTEEELNQVKATYSKNSLS 221 (271)
Q Consensus 197 Lk~~L~e~~~El~qlk~~LEk~SLl 221 (271)
||..++..+.++.+++++|...+..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasd 134 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASD 134 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6778888888999999888865433
No 340
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=58.39 E-value=52 Score=30.72 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy9550 240 VELKELD 246 (271)
Q Consensus 240 EELK~L~ 246 (271)
+|++.++
T Consensus 55 ~~~~~~~ 61 (378)
T TIGR01554 55 DAIADLE 61 (378)
T ss_pred HHHHHHH
Confidence 3333333
No 341
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=58.29 E-value=99 Score=26.71 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKAT-YSKNSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~-LEk~SLlE~EkrERRaLERKiSE 237 (271)
+..++-+.-+.+.++|+.+++.+..+|..++.. |++.-|+ +.+=+.|--+|+|
T Consensus 50 ~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLt---k~dVeeLV~~Ise 103 (126)
T PF07028_consen 50 NLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLT---KEDVEELVLRISE 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHh
Confidence 444555666667888888888888888888766 4554454 4456667777776
No 342
>PRK14155 heat shock protein GrpE; Provisional
Probab=58.26 E-value=52 Score=29.87 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+++..+.+.|+.++.+.+.++.-+.+++| |..--|.+...+.+.+.=+.+| |-++++|
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~L---LpV~DnL 76 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDL---LGAADNL 76 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhhH
Confidence 33344445555555555554444444444 2233344444444544444443 4555555
No 343
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.22 E-value=75 Score=31.40 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSE 237 (271)
Q Consensus 226 rERRaLERKiSE 237 (271)
..+..+++.+.+
T Consensus 311 ~~~~e~~~~~~~ 322 (582)
T PF09731_consen 311 ELREEFEREREE 322 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 344
>KOG0240|consensus
Probab=58.16 E-value=44 Score=35.14 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~ql 211 (271)
.++++|..+|++.+.++++.
T Consensus 421 e~~~~L~qqlD~kd~~~n~~ 440 (607)
T KOG0240|consen 421 ERIESLYQQLDQKDDQINKQ 440 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666555433
No 345
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=58.15 E-value=64 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEEELNQV 211 (271)
Q Consensus 194 NErLk~~L~e~~~El~ql 211 (271)
.+.||.++++.+.++-.+
T Consensus 2 l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 2 IDTLREEIDRLDAEILAL 19 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466888888888887776
No 346
>KOG0982|consensus
Probab=57.91 E-value=43 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
+=.++..++|.|+.++|.++.+...+|
T Consensus 291 ~eReasle~Enlqmr~qqleeentelR 317 (502)
T KOG0982|consen 291 KEREASLEKENLQMRDQQLEEENTELR 317 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445577888888877777666655
No 347
>KOG0963|consensus
Probab=57.84 E-value=35 Score=35.97 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhccc
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYS-----KNSLSEQE-----KRERRTMERKLSEMEVE-LKELDQFKKENQRLKDE 258 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLlE~E-----krERRaLERKiSEmEEE-LK~L~~LRadNQRLKDE 258 (271)
+-.||++|+.+|.+...+++..|.+-. +..+-+.| ..|.++++-. .+++.+ .++...|+.++|.+++-
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e-~~~~q~~~e~e~~L~~~~~~~~~q 197 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETE-EKLEQEWAEREAGLKDEEQNLQEQ 197 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999988888887764321 11111111 1121221111 122222 33666777777777777
Q ss_pred ccchhhhhhcc
Q psy9550 259 NGALIRVISKL 269 (271)
Q Consensus 259 NgALIRVISKL 269 (271)
|++|=--|+.|
T Consensus 198 ~~~le~ki~~l 208 (629)
T KOG0963|consen 198 LEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHH
Confidence 77665544444
No 348
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.83 E-value=34 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LR 249 (271)
+..|++.+.|.+.-+++|..|.
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLP 51 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444444444444444443
No 349
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.67 E-value=33 Score=32.64 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.8
Q ss_pred cchHHHHHH
Q psy9550 181 LDYKKLYEE 189 (271)
Q Consensus 181 ~DYKkLYE~ 189 (271)
.-+|..|-+
T Consensus 121 ~~~RS~yLe 129 (269)
T PF05278_consen 121 QQFRSYYLE 129 (269)
T ss_pred HHHHHHHHH
Confidence 334444443
No 350
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=57.62 E-value=60 Score=28.42 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHH
Q psy9550 230 TMERKLSEMEVELK-ELDQFKK 250 (271)
Q Consensus 230 aLERKiSEmEEELK-~L~~LRa 250 (271)
+|-.++.||.+||. +|+.|..
T Consensus 93 ~L~d~v~eLkeel~~el~~l~~ 114 (146)
T PF05852_consen 93 KLTDRVEELKEELEFELERLQS 114 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999888 6666653
No 351
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.58 E-value=51 Score=33.02 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
.|+...|-++|+.+-+++..||-.++
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555555555555554444
No 352
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.37 E-value=1.1e+02 Score=28.17 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISK 268 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISK 268 (271)
+.+.|-.....||.|.. .|-++.+.|.+||+-|..-+.+
T Consensus 82 ~~~~L~aq~rqlEkE~q---~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQ---SLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHhhhh
Confidence 55566666666666654 4446667777777766554443
No 353
>PRK14140 heat shock protein GrpE; Provisional
Probab=57.26 E-value=86 Score=28.18 Aligned_cols=61 Identities=28% Similarity=0.461 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+.+++.++.+.|+.++++.+..+.-+++.++ |..--|.+...+.+.++=+.+| |-++++|.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~L---LpvlDnLe 101 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDL---LPALDNFE 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4455555555555555555555544444444 2233333333444444433333 55666663
No 354
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=57.20 E-value=17 Score=34.52 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
-..+...||+.+++++..|+..++..-+... -|...--.+...+.+|+++|..|
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~---~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESD---EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cccCChhhHHHHHHHHHHHHHHh
Confidence 3456667777777777777776654332211 12223344566666666666665
No 355
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=57.09 E-value=5.6 Score=29.42 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=3.4
Q ss_pred HHhhhhhcc
Q psy9550 249 KKENQRLKD 257 (271)
Q Consensus 249 RadNQRLKD 257 (271)
+++|.+|+.
T Consensus 44 ~~en~~L~~ 52 (85)
T TIGR02209 44 QKEWRDLQL 52 (85)
T ss_pred HHHHHHHHH
Confidence 333333333
No 356
>KOG2264|consensus
Probab=57.00 E-value=55 Score=35.12 Aligned_cols=70 Identities=14% Similarity=0.314 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK-NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQ 253 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk-~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQ 253 (271)
.|-|++-+.+..|..+|..+-|+++-|+++++..+|. ..+.+-++.|--+|+-.|+ ..-.++.+|++.|+
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie---qaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE---QAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH---HHHHHHHHHHhhcC
Confidence 3556677777778888888888888888888776662 1222233334344444443 33444555666554
No 357
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.95 E-value=90 Score=30.35 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=47.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK------------NSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk------------~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
..+..||+.=+|+.++-...+...+.++..+|..+..++.+ +..++---.|=|+..+++++++++.++
T Consensus 212 ~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 212 RADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45559999999999888888888888888877777655432 122222245566777777777777665
Q ss_pred HH
Q psy9550 245 LD 246 (271)
Q Consensus 245 L~ 246 (271)
+.
T Consensus 292 ~s 293 (359)
T PF10498_consen 292 AS 293 (359)
T ss_pred Hh
Confidence 43
No 358
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.78 E-value=68 Score=30.30 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELN-QVKATY 215 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~-qlk~~L 215 (271)
-+|++.+..+...|..|...++++++-.+ ..+.-|
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lL 44 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLL 44 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHH
Confidence 47899999999999999999999988644 444433
No 359
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=56.76 E-value=59 Score=27.03 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcchhHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKAT----YSKNSLSEQEKRERRTMERKLSEME 239 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~----LEk~SLlE~EkrERRaLERKiSEmE 239 (271)
|.|.||.... +|..+|..+..++.++|.+ +|.++-+.+ |...|-++|.+++
T Consensus 2 dk~elfd~l~----~le~~l~~l~~el~~LK~~~~el~EEN~~L~i---EN~~Lr~~l~~~~ 56 (110)
T PRK13169 2 DKKEIFDALD----DLEQNLGVLLKELGALKKQLAELLEENTALRL---ENDKLRERLEELE 56 (110)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 5567777654 4555566666666666644 345555544 6667777777663
No 360
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.73 E-value=81 Score=34.59 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELS----RLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 181 ~DYKkLYE~~k~ENE----rLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
-.|.+|+++..++.+ .++.++..+..+++.++.++..+...+-|..+.++++.++..++++..
T Consensus 420 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~ 486 (1201)
T PF12128_consen 420 EEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQN 486 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554433 344444455555666666665544444445555555555554444433
No 361
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.65 E-value=82 Score=30.34 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=5.9
Q ss_pred chHHHHHHHH
Q psy9550 182 DYKKLYEESQ 191 (271)
Q Consensus 182 DYKkLYE~~k 191 (271)
+|.+||+...
T Consensus 209 ~~~~l~~~~~ 218 (457)
T TIGR01000 209 PYQSLYENYQ 218 (457)
T ss_pred cHHHHHHHHH
Confidence 6677766333
No 362
>KOG0999|consensus
Probab=56.57 E-value=49 Score=35.24 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.++.+.|+.++..+..++.|+..+.-+++ =+++ =.|+.+|+.++.|||-++. .+|.|...+|
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~l-LeeK~~Lkqq~eEleaeyd---~~R~Eldqtk 70 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLEL-LEEKEDLKQQLEELEAEYD---LARTELDQTK 70 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34455555555555555555543332222 1112 3488999999999998764 3455554444
No 363
>PRK14151 heat shock protein GrpE; Provisional
Probab=56.48 E-value=87 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
|.|...+.+++.=+.+| |-++++|.
T Consensus 60 E~e~~~~~a~~~~~~~L---Lpv~Dnle 84 (176)
T PRK14151 60 DVEKAHKFALEKFAGDL---LPVVDSLE 84 (176)
T ss_pred HHHHHHHHHHHHHHHHH---hhHHhHHH
Confidence 44444555555444444 55666664
No 364
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.22 E-value=12 Score=26.95 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=6.4
Q ss_pred HHHhhhhhcccccch
Q psy9550 248 FKKENQRLKDENGAL 262 (271)
Q Consensus 248 LRadNQRLKDENgAL 262 (271)
|..+|+.|+.++..|
T Consensus 38 L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 38 LESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 365
>PRK14154 heat shock protein GrpE; Provisional
Probab=55.85 E-value=93 Score=28.44 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+.+.|+.++++.+..+.-+.+++| |..--|.+...+.+.++=+.+| |-++++|
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~L---LpVlDnL 115 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDL---LPVADSL 115 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhHH
Confidence 334444444444444433333333 1222233333444444433333 5555555
No 366
>PRK14144 heat shock protein GrpE; Provisional
Probab=55.80 E-value=96 Score=28.17 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+..+.+.|+.++.+....+.-+.+.+| |..--|.+..-+.+.+.=+.+| |-++++|
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~L---LpV~DnL 108 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISAL---LPVVDSL 108 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhHH
Confidence 334444555555555544444444444 1222233344444444444333 5556665
No 367
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.76 E-value=79 Score=32.13 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEE 206 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~ 206 (271)
-++.-+||.+|+++-.+++.
T Consensus 294 I~~VarENs~LqrQKle~e~ 313 (442)
T PF06637_consen 294 IERVARENSDLQRQKLEAEQ 313 (442)
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 45566777777766544443
No 368
>KOG2077|consensus
Probab=55.57 E-value=55 Score=35.04 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
|.-+.-+-.||.||-|+|||||.+..
T Consensus 346 ea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 346 EAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466788899999999999996643
No 369
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=55.51 E-value=1e+02 Score=30.98 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh-------------------hcchhHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELN-------QVKATYS-------------------KNSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~-------qlk~~LE-------------------k~SLlE~EkrERRaLERKiSE 237 (271)
..|--.+++||.+|+-+|++..+|.. ++..+|. ..+++..-.-.--+||+|+-+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 35666788889998888877766542 2211221 224554434444578999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9550 238 MEVELKELDQFKKENQ 253 (271)
Q Consensus 238 mEEELK~L~~LRadNQ 253 (271)
|-.|++.|-+|..|-+
T Consensus 213 Lm~EirnLLQle~~~~ 228 (401)
T PF06785_consen 213 LMYEIRNLLQLESDMK 228 (401)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999998888876543
No 370
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=55.46 E-value=31 Score=27.84 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|.....+.-++-..|+++---+.+++.-|+...-... ..-+..|+.++.++|++++.|..++...+.+.
T Consensus 37 ~Y~~~~l~~l~~I~~l~~~G~sl~eI~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 37 RYPEETVKRLRFIKRAQELGFSLEEIGGLLGLVDGTHC-REMYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred eECHHHHHHHHHHHHHHHCCCCHHHHHHHHhcccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333333444455555557777766652111111 12245677778888888887777776655543
No 371
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=55.44 E-value=23 Score=27.36 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
..|...-.+.-++-..|+++---|++++.-++.... .-...|+.++.++|++++.|..||
T Consensus 37 R~Y~~~~l~~l~~I~~lr~~G~~l~eI~~~l~~~~~-----~~~~~l~~~~~~l~~~i~~l~~~r 96 (96)
T cd04788 37 RLYDRADIRRLHQIIALRRLGFSLREIGRALDGPDF-----DPLELLRRQLARLEEQLELATRLR 96 (96)
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHhCCCh-----hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466665555555556677766667787766654321 235679999999999999998764
No 372
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.33 E-value=14 Score=26.25 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~ 244 (271)
+++.+.+++++.++|.|+..
T Consensus 47 r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555566555555544
No 373
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=55.25 E-value=11 Score=35.70 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=45.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------hcchhHHHHHHHHHHHHHHHH
Q psy9550 175 PNENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKA-TYS--------------KNSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 175 ~~e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~-~LE--------------k~SLlE~EkrERRaLERKiSE 237 (271)
++.++-+|.+-+-.+.+.-..+|+.+|+++.+|+...+. +|+ ..+++|.|.+.+-.-|..+.+
T Consensus 96 kenntl~dLnnvd~ktkklI~el~keLee~kKeldnk~n~el~iq~I~dk~i~kkden~sVSEhEdFkQLEN~~n~l~ 173 (255)
T TIGR01597 96 KERNTLPDLNNVDKKTKKLINKLQKELEELKKELDNEMNDELTIQPIHDKIIIKKDENNSVSEHEDFKQLENEKNSSV 173 (255)
T ss_pred hccccCcccccccHHHHHHHHHHHHHHHHHHHHhccccCcceeeeecccceeeeccCCCcccccccHHHHhhhccchh
Confidence 455666888888888888888899999999888887662 222 358999998866544444443
No 374
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.18 E-value=55 Score=33.18 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L 245 (271)
++||.+|++.+.|.+.|+.+|
T Consensus 355 rkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 355 RKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777666666555443
No 375
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=55.06 E-value=25 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
.|.+.-.+.-++-..|+++---|.+++.-++.... ..-+..|++++.+++++++.|..+
T Consensus 38 ~Y~~~~~~~l~~I~~lr~~G~~l~eI~~~l~~~~~----~~~~~~l~~~~~~l~~~i~~l~~~ 96 (97)
T cd04782 38 YYTLEQFEQLDIILLLKELGISLKEIKDYLDNRNP----DELIELLKKQEKEIKEEIEELQKI 96 (97)
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45544444444445566666667777766654332 223567999999999999998875
No 376
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.84 E-value=55 Score=30.03 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=4.8
Q ss_pred HHHhhhhhccc
Q psy9550 248 FKKENQRLKDE 258 (271)
Q Consensus 248 LRadNQRLKDE 258 (271)
|-.|-.+||||
T Consensus 86 ~~eey~~Lk~~ 96 (230)
T PF10146_consen 86 LYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 377
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.79 E-value=63 Score=27.04 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
-+..++|..+|+..+-|++.++.++.+.. =.++ ..|--.|-....+++...+.+..|+.+.+.|.....++
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l-~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDEL-REEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888887777766521 1111 22223333344444444455555666655555544444
No 378
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.65 E-value=57 Score=31.13 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
--|.++...|-+|-.+-..+.-|+.-||..|+- -.+.++ +|.++.|+.++|-+-..++.|+.+..-||+
T Consensus 91 ekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~----~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 91 EKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQL----QREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555655555555555566666655552 133333 344467777777666677777776666664
No 379
>KOG0577|consensus
Probab=54.51 E-value=44 Score=36.20 Aligned_cols=31 Identities=39% Similarity=0.594 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q psy9550 222 EQEKRERRTMERKLS--------EMEVELKELDQFKKEN 252 (271)
Q Consensus 222 E~EkrERRaLERKiS--------EmEEELK~L~~LRadN 252 (271)
+--++|+++||.+++ .+|||+.+|..-|++-
T Consensus 850 ~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rser 888 (948)
T KOG0577|consen 850 EQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSER 888 (948)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHH
Confidence 344778888888876 4788888888777543
No 380
>PRK10722 hypothetical protein; Provisional
Probab=54.43 E-value=23 Score=33.40 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.-|++|-++.-.+.|+|+.+..+++.+|.++...||.
T Consensus 165 ~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEn 201 (247)
T PRK10722 165 QRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLEN 201 (247)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777778888888888888888888777764
No 381
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=54.27 E-value=1.3e+02 Score=25.34 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhcccccch
Q psy9550 245 LDQFKKENQRLKDENGAL 262 (271)
Q Consensus 245 L~~LRadNQRLKDENgAL 262 (271)
...++.+|.+|+.+.|.+
T Consensus 121 r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 121 RDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 355666677776665543
No 382
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.26 E-value=70 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy9550 197 LRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 197 Lk~~L~e~~~El~qlk~~LE 216 (271)
|...|.+.+.++++|..+-|
T Consensus 3 l~~~l~EKDe~Ia~L~eEGe 22 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGE 22 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34455566666666655444
No 383
>KOG0240|consensus
Probab=54.22 E-value=45 Score=35.08 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSR 196 (271)
Q Consensus 184 KkLYE~~k~ENEr 196 (271)
..||.++-+.+++
T Consensus 424 ~~L~qqlD~kd~~ 436 (607)
T KOG0240|consen 424 ESLYQQLDQKDDQ 436 (607)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444333
No 384
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=54.14 E-value=86 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
.+=|+....+|++|+.++.+++++|.....
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~~~~ 65 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKEAAD 65 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466788888888888888888888776543
No 385
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.10 E-value=65 Score=29.72 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------hc---chhHHHHH-----HHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS------------------KN---SLSEQEKR-----ERRTMERK 234 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE------------------k~---SLlE~Ekr-----ERRaLERK 234 (271)
..|-. -|+++..++.+..+|.++..++.++|...+ +. +..++|+| .-+.+|+.
T Consensus 29 TGYs~-Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~ 107 (207)
T PF05546_consen 29 TGYSE-IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQA 107 (207)
T ss_pred cChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHH
Confidence 34443 367777777777788888777777775433 11 23345443 44566666
Q ss_pred HHHHHHHHHHHH
Q psy9550 235 LSEMEVELKELD 246 (271)
Q Consensus 235 iSEmEEELK~L~ 246 (271)
..++.++|..++
T Consensus 108 e~~ak~~l~~aE 119 (207)
T PF05546_consen 108 EEEAKEALEEAE 119 (207)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 386
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.07 E-value=78 Score=32.40 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVEL 242 (271)
Q Consensus 227 ERRaLERKiSEmEEEL 242 (271)
|+..|++.+..|++|+
T Consensus 110 ~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 110 ETQELTKEIEQLKSER 125 (472)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333333444444333
No 387
>KOG0681|consensus
Probab=54.02 E-value=85 Score=33.25 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHHHHHHH-HHHHHHHhhhhhcc
Q psy9550 236 SEMEVELK-ELDQFKKENQRLKD 257 (271)
Q Consensus 236 SEmEEELK-~L~~LRadNQRLKD 257 (271)
..+|+++| .|.+|...|.+|++
T Consensus 461 e~lee~~~~~~~dl~~l~~~L~e 483 (645)
T KOG0681|consen 461 EDLEEENKSILEDLKSLNHELLE 483 (645)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHh
Confidence 45888898 88999999988874
No 388
>PF09592 DUF2031: Protein of unknown function (DUF2031); InterPro: IPR006484 The sequences in this group represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=54.01 E-value=12 Score=34.94 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=55.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------hcchhHHHHHHHHHHHHHH----
Q psy9550 175 PNENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKA-TYS--------------KNSLSEQEKRERRTMERKL---- 235 (271)
Q Consensus 175 ~~e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~-~LE--------------k~SLlE~EkrERRaLERKi---- 235 (271)
++.++.+|.+-+-.+.+.-..+|+.+|+++.+|+...+. +|+ ..+++|.|.+..-.=+..+
T Consensus 95 kenntl~~L~nvd~ktkklI~el~keLeevkKeldnk~n~el~iq~I~dk~I~kkden~svSe~edfkqLeN~~N~Le~E 174 (228)
T PF09592_consen 95 KENNTLPDLNNVDKKTKKLINELRKELEEVKKELDNKRNGELAIQPIHDKRIIKKDENNSVSEHEDFKQLENEENFLETE 174 (228)
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCcceeeeeccccceeecccccccccccchhhhccccccchhh
Confidence 455677888888888888888899999999888877652 222 3478888776543222222
Q ss_pred ------HHHHHHHHHHHHHHHhhhhhcccccchhhhh
Q psy9550 236 ------SEMEVELKELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 236 ------SEmEEELK~L~~LRadNQRLKDENgALIRVI 266 (271)
+.-..++|...++|. ...+.++|+|
T Consensus 175 ~neI~sS~ny~klK~~rKlKK------~~~kli~~~l 205 (228)
T PF09592_consen 175 YNEIDSSNNYKKLKINRKLKK------EFKKLIKRGL 205 (228)
T ss_pred hhccccchhHHHHHHHHHHHH------HHHHHHHHHH
Confidence 334456666666663 3455555543
No 389
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=53.99 E-value=71 Score=29.01 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=10.3
Q ss_pred HHHhhhhhcccccchhhhhhc
Q psy9550 248 FKKENQRLKDENGALIRVISK 268 (271)
Q Consensus 248 LRadNQRLKDENgALIRVISK 268 (271)
|.++++++..|--+|+.-|.+
T Consensus 126 l~~~~~k~~~~l~~l~~~v~~ 146 (256)
T PF14932_consen 126 LSAECSKLNNELNQLLGEVSK 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554455544444
No 390
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=53.83 E-value=51 Score=26.02 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLS 236 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiS 236 (271)
.|+|+..++.+.+-+..+..-|+..+ ||...++++|+.|=.
T Consensus 10 VEkLQ~mi~nTieN~~eAee~l~~~~--el~~~~~~~i~eKN~ 50 (70)
T TIGR03090 10 VEKLQQMIDNTIENMEEANEYIEAHA--ELSEEEKQRIEEKNE 50 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHH
Confidence 47899999888888888777777655 455556666665543
No 391
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=53.77 E-value=63 Score=31.08 Aligned_cols=63 Identities=17% Similarity=0.388 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEE-LNQVKATYSK----------------NSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~E-l~qlk~~LEk----------------~SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
.+...+.+.|++++.+++.+ +.-+..+||+ .+...+ .-|+-.|+++..-+|+||. .|++
T Consensus 167 qkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~-~ae~seLq~r~~~l~~~L~---~L~~ 242 (289)
T COG4985 167 QKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHY-VAEKSELQKRLAQLQTELD---ALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHhh
Confidence 34455677888888887764 5555555542 112222 3456666777777766654 4555
Q ss_pred hhhh
Q psy9550 251 ENQR 254 (271)
Q Consensus 251 dNQR 254 (271)
|-.|
T Consensus 243 e~~r 246 (289)
T COG4985 243 ELER 246 (289)
T ss_pred hhhh
Confidence 5544
No 392
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=53.67 E-value=1.5e+02 Score=25.59 Aligned_cols=69 Identities=17% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhcc
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKL----SEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKi----SEmEEELK~L~~LRadNQRLKD 257 (271)
.+..++++....+...+..+.+.+.+|... ....-+..+...|-..+ ..+-.--+.+.+|+-||+.|++
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 455566666666666666666666555422 11112222222222222 2233334566778888887774
No 393
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.57 E-value=82 Score=32.66 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LR 249 (271)
.|++-+++-|+|+.-|+.||
T Consensus 450 Emdk~LskKeeeverLQ~lk 469 (527)
T PF15066_consen 450 EMDKTLSKKEEEVERLQQLK 469 (527)
T ss_pred HHHHHhhhhHHHHHHHHHHH
Confidence 35555666666666666666
No 394
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=53.53 E-value=68 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.+-+-|-...+.||.+|+.++++++.++..+|.++++
T Consensus 7 ~~~~~ln~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~ 43 (236)
T PF12017_consen 7 TEECILNRTLKIENKKLKKKIRRLEKELKKLKQKLEK 43 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888999999999999999999999887754
No 395
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.49 E-value=1e+02 Score=23.88 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
++....|..+|+.+++.++..+..+.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~ 39 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLM 39 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45556677777777777776555554
No 396
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.40 E-value=51 Score=24.73 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
...+..++..++.+++.+.....+...|.++
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3344455555555555555555555555554
No 397
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=53.39 E-value=80 Score=30.62 Aligned_cols=67 Identities=16% Similarity=0.315 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h----------------cc---hhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYS----K----------------NS---LSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LE----k----------------~S---LlE~EkrERRaLERKiSEmEEEL 242 (271)
=+|++...++.|...++.+-+|..++..+-+ | .. +..+ .-|.|-|..+|..+|+|.
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaL-i~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDAL-IMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777666666653322 1 11 2222 458888888999988887
Q ss_pred H----HHHHHHHhhh
Q psy9550 243 K----ELDQFKKENQ 253 (271)
Q Consensus 243 K----~L~~LRadNQ 253 (271)
. .|.+.|.--.
T Consensus 213 ~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 213 ELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 6 4556665554
No 398
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=53.38 E-value=84 Score=25.99 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhc
Q psy9550 244 ELDQFKKENQRLK 256 (271)
Q Consensus 244 ~L~~LRadNQRLK 256 (271)
+|.+.+.+|.+|.
T Consensus 43 EL~~Ak~e~~~Lr 55 (125)
T PF03245_consen 43 ELADAKAEIDRLR 55 (125)
T ss_pred HHHHHHhhHHHHH
Confidence 4555555555544
No 399
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.29 E-value=84 Score=25.78 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcchhHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKAT----YSKNSLSEQEKRERRTMERKLSEMEV 240 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~----LEk~SLlE~EkrERRaLERKiSEmEE 240 (271)
|-+.||.... .|..+|..+..++.++|.+ +|.++-+.+ |...|-++|.+++.
T Consensus 2 dk~~l~~~l~----~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~---EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 2 DKKELFDRLD----QLEQQLGQLLEELEELKKQLQELLEENARLRI---ENEHLRERLEELEQ 57 (107)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 3456666543 4555555566666666544 344554433 66677777777765
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.26 E-value=82 Score=33.25 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHH--------------HHHHH-HHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEM--------------EVELK-ELDQFKK 250 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEm--------------EEELK-~L~~LRa 250 (271)
..++.+.++...+|+++++++.+++...++-+ +.++ ..-...|++|+.+| |.+.+ +|+.++.
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a-~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~ 646 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA-KDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKD 646 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Q ss_pred hhhhhcc
Q psy9550 251 ENQRLKD 257 (271)
Q Consensus 251 dNQRLKD 257 (271)
+.+.|+.
T Consensus 647 ~l~~l~~ 653 (717)
T PF10168_consen 647 QLQDLKA 653 (717)
T ss_pred HHHHHHH
No 401
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.20 E-value=1.5e+02 Score=28.41 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKT 204 (271)
Q Consensus 190 ~k~ENErLk~~L~e~ 204 (271)
++-+.+=|+.+|.++
T Consensus 164 a~vkV~WLR~~L~Ei 178 (269)
T PF05278_consen 164 AKVKVDWLRSKLEEI 178 (269)
T ss_pred cCcchHHHHHHHHHH
Confidence 344455566666553
No 402
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.08 E-value=71 Score=33.24 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELK 243 (271)
Q Consensus 230 aLERKiSEmEEELK 243 (271)
+|...+..|.+|+.
T Consensus 84 ~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 84 QLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555655543
No 403
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.04 E-value=1.1e+02 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKE 244 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~ 244 (271)
+...++..+.++++||+.
T Consensus 155 ~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 344445555555555443
No 404
>PLN02381 valyl-tRNA synthetase
Probab=52.92 E-value=45 Score=36.42 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
.+-+|+.+.-+.+..+.++|+.+|+.++..|+.-
T Consensus 990 ~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~ 1023 (1066)
T PLN02381 990 QGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNAS 1023 (1066)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4668999999999999999999999999888754
No 405
>KOG1666|consensus
Probab=52.82 E-value=72 Score=29.82 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLR--------ETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk--------~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
-+|+-|-+++...+.++- ..|++++..+.++...|++. .+-++....|-.+.-|+-+-..+|| +|+.
T Consensus 10 qqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~---~l~~ 86 (220)
T KOG1666|consen 10 QQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLK---KLKR 86 (220)
T ss_pred HHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHH---HHHH
Confidence 456666666666655542 34566666666665555543 2224444457777888777776665 7788
Q ss_pred hhhhhccccc
Q psy9550 251 ENQRLKDENG 260 (271)
Q Consensus 251 dNQRLKDENg 260 (271)
|.++..+.|+
T Consensus 87 e~k~~~~~~~ 96 (220)
T KOG1666|consen 87 ELKRTTSRNL 96 (220)
T ss_pred HHHHhhcccc
Confidence 8888876654
No 406
>PHA02554 13 neck protein; Provisional
Probab=52.80 E-value=13 Score=36.01 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKT 204 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~ 204 (271)
.-++|-++|||++.+|.|+|+++|...
T Consensus 276 GITldG~~i~eeA~~eie~Lr~eL~~~ 302 (311)
T PHA02554 276 GVTLDGRRLIEEARQEKEKLREELLLL 302 (311)
T ss_pred ceeechHhHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999988653
No 407
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=52.72 E-value=37 Score=28.20 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|.+.-.+.=++-..++++---|.+++.-++ ...-. . ..-+..++.++.+++++++.|+.++...+.+.
T Consensus 38 ~Y~~~~l~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~-~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 38 TYTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQRH-S-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred cCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhccCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444333333455555555666655443 11100 0 11123456666666666666666666554433
No 408
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=52.72 E-value=37 Score=27.85 Aligned_cols=18 Identities=50% Similarity=0.600 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKEL 245 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L 245 (271)
-.-|-|+|+|||++.+.|
T Consensus 17 a~LlRRkl~ele~eN~~l 34 (96)
T PF11365_consen 17 AELLRRKLSELEDENKQL 34 (96)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566677777766644
No 409
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=52.69 E-value=1.1e+02 Score=27.12 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhcchhH---HHHHHHHHHHHHHHHHHHHHHHHH----
Q psy9550 188 EESQAELSRLRETLSKTEE--------------ELNQVKATYSKNSLSE---QEKRERRTMERKLSEMEVELKELD---- 246 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~--------------El~qlk~~LEk~SLlE---~EkrERRaLERKiSEmEEELK~L~---- 246 (271)
.++.+||..|+..|++-+. .+...+..-.....+. ....+-+....||-||..=++...
T Consensus 73 ~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de 152 (181)
T PF05769_consen 73 RQLQQENRELRQSLEEHQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDE 152 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Q ss_pred ----HHHHhhhhhcccccchhhhhh
Q psy9550 247 ----QFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 247 ----~LRadNQRLKDENgALIRVIS 267 (271)
+......+|..||..|=+.++
T Consensus 153 ~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 153 ENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHh
No 410
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.62 E-value=90 Score=34.41 Aligned_cols=26 Identities=12% Similarity=0.411 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQR 254 (271)
..++.++..+...+.+|..|-.+.+.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~i~~ 962 (1311)
T TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKDIEN 962 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555544443
No 411
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.59 E-value=71 Score=30.15 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
.+-|.+...++-++..++...+....++.
T Consensus 28 ~kk~~ell~e~k~~~k~~~~~~Kk~~~l~ 56 (309)
T PF09728_consen 28 CKKYAELLEEMKRLQKQLKKLQKKQEQLQ 56 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888887777777655553
No 412
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.57 E-value=1.1e+02 Score=28.99 Aligned_cols=63 Identities=22% Similarity=0.501 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
.+|...+.|.+++-.++..++.|...++..-|+ .+|.+| -.||-.++..+.-+...+..|..|
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m-~eer~~~~~~~~~~~~k~~kLe~L 301 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM-AEERQKLEKELEKLKKKIEKLEKL 301 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777777777777776664 345555 455555665555555555555554
No 413
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=52.40 E-value=1.2e+02 Score=28.38 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLS 221 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLl 221 (271)
++.+|+.-+++++++.+..+.+++.++.++...+..+++...+
T Consensus 93 d~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is 135 (385)
T PRK09859 93 DPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVS 135 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 3467887788888888777777777777777666666665544
No 414
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=52.37 E-value=71 Score=32.54 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
.++.-|++.+..-.-..|.++.++++|+..
T Consensus 467 ql~~Le~k~~~a~~rk~~~~l~q~~~l~~~ 496 (542)
T PF10079_consen 467 QLDYLEKKLLKAEKRKHETALRQLDRLENS 496 (542)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 333444444444444456667777776643
No 415
>KOG4348|consensus
Probab=52.27 E-value=46 Score=34.56 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 223 QEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 223 ~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
|-+...+.||+-..+||||-+.-..|.+|..+||.
T Consensus 588 lk~~~~kel~kl~~dleeek~mr~~lemei~~lkk 622 (627)
T KOG4348|consen 588 LKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKK 622 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 34667788899999999999999999999999884
No 416
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=52.24 E-value=78 Score=34.47 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcc
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRLKD 257 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRLKD 257 (271)
..+++..+.+...+..++.+.+.++..++.+++ ...+..+ ...-..+.+++.+++.++. .+.+++.+...|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (1163)
T COG1196 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERL-SERLEDLKEELKELEAELEELQTELEELNEELEELEE 453 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q ss_pred cccchhhhhhcc
Q psy9550 258 ENGALIRVISKL 269 (271)
Q Consensus 258 ENgALIRVISKL 269 (271)
.-..+...+.++
T Consensus 454 ~~~~~~~~~~~~ 465 (1163)
T COG1196 454 QLEELRDRLKEL 465 (1163)
T ss_pred HHHHHHHHHHHH
No 417
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.18 E-value=20 Score=25.53 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~ql 211 (271)
+.+.++.+++++++++++|++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666666666666654
No 418
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=52.17 E-value=17 Score=30.33 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEE-LNQVKATY 215 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~E-l~qlk~~L 215 (271)
.||++.|++.. +|+|+.+++++..| +..+.+++
T Consensus 69 k~Ye~a~~~~~--~~~lqkRle~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 69 KDYEEAVDQLT--NEELQKRLEELSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHHHh--HHHHHHHHHhCCHHHHHHHHHHh
Confidence 68888887554 44666666655432 44444433
No 419
>KOG0996|consensus
Probab=52.12 E-value=60 Score=36.83 Aligned_cols=20 Identities=10% Similarity=0.404 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9550 232 ERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRad 251 (271)
.+.|.+|+.|+.+|..+...
T Consensus 439 ~~~i~~~~~ei~~L~~~~~~ 458 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEELLEK 458 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 45566677777776665543
No 420
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.11 E-value=65 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L 245 (271)
.+...++.++.+.++|+|.|
T Consensus 94 ~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 94 QEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666654
No 421
>KOG4674|consensus
Probab=52.09 E-value=70 Score=37.57 Aligned_cols=52 Identities=29% Similarity=0.552 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------chhHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKN------SLSEQEKRERRTMERKLSEME 239 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~EkrERRaLERKiSEmE 239 (271)
|++++.++.+|+.+|...+..+++++..+.+. -+.++ ..+++.+.+++-+++
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l-~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDEL-NNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45556699999999999888888888766521 23333 445555555554433
No 422
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.09 E-value=24 Score=34.22 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 226 RERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
.|..+|.+++.+|+.++..++.+++||++|+.
T Consensus 64 ~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ 95 (337)
T PRK14872 64 TENFLLKERIALLEERLKSYEEANQTPPLFSE 95 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555666666665553
No 423
>KOG0979|consensus
Probab=51.79 E-value=67 Score=35.82 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSK-NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk-~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
|.+-++.++++.+.+++..+..|+. ...+...++|++.|+--+.+.+.....|+.++.+..+.|+|=
T Consensus 644 ~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~ 711 (1072)
T KOG0979|consen 644 EIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEY 711 (1072)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444442 123344477777777666666665556666655555555443
No 424
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=51.65 E-value=4.9 Score=41.02 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
+-++|...+-+|.+.-..+.+|.++.++.
T Consensus 292 ~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 292 EARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333444444444333
No 425
>KOG2996|consensus
Probab=51.63 E-value=21 Score=38.04 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS--------KN-----SLSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--------k~-----SLlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
++..++..-+|-.+.+|+|+.++.+.-|-.|. +. -|-|+-+.-..++|++ .|++.|.+++||-.=
T Consensus 295 k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~ek~--~LkeAleaM~Dla~y 372 (865)
T KOG2996|consen 295 KLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASEKR--NLKEALEAMEDLAQY 372 (865)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCChhh--hHHHHHHHHHHHHHH
Confidence 67777888888888888888887775553332 11 1336666666666666 777777777777766
Q ss_pred hhhhcccccchhhhhhc
Q psy9550 252 NQRLKDENGALIRVISK 268 (271)
Q Consensus 252 NQRLKDENgALIRVISK 268 (271)
.-..|-.|.+| |||..
T Consensus 373 iNEvkRD~etl-r~I~e 388 (865)
T KOG2996|consen 373 INEVKRDNETL-RVIDE 388 (865)
T ss_pred HhHhhcchHHH-HHHHH
Confidence 66666666664 77753
No 426
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=51.56 E-value=1.5e+02 Score=26.94 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLS 202 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~ 202 (271)
+||+-.|.++...+.....|+
T Consensus 108 ~~k~NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 108 GYKKNEETLKKCIEEYEERLK 128 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 444444444444433333333
No 427
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=51.36 E-value=67 Score=31.54 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadN 252 (271)
|+..+|.||..||++...|.+=|.+.
T Consensus 34 ~~~~~e~~~~~l~~~~~~~~~~~~~~ 59 (328)
T PF15369_consen 34 EQESFEKKIRQLEEQNELIIKEREDL 59 (328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444555555555544444444333
No 428
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=51.35 E-value=48 Score=25.94 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
.|.+...+.-++-..|+++---+++++.-++.. .....|+.++.++|++++.|++.+.....
T Consensus 38 ~Y~~~~l~~l~~I~~l~~~G~~l~ei~~~l~~~-------~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04789 38 LYPDSDLQRLLLIQQLQAGGLSLKECLACLQGK-------LTRSLLLERLSSLAEQIARKQQARDLLAA 99 (102)
T ss_pred eCCHHHHHHHHHHHHHHHCCCCHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444455665555566666555421 12456788888888888888887765443
No 429
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=51.24 E-value=1.2e+02 Score=28.81 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELKELDQF 248 (271)
Q Consensus 231 LERKiSEmEEELK~L~~L 248 (271)
+|||-.|+|---|-|..|
T Consensus 199 Iekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444544444444333
No 430
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.20 E-value=62 Score=24.12 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhh
Q psy9550 201 LSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 201 L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVI 266 (271)
+++.++++++++..++. -...-++||++.+.+|.+ +..+..+..++++=+--++|.|
T Consensus 1 ~~~i~e~l~~ie~~l~~------~~~~i~~lE~~~~~~e~~---i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDN------HEERIDKLEKRDAANEKD---IKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 431
>PF13514 AAA_27: AAA domain
Probab=51.13 E-value=96 Score=33.50 Aligned_cols=86 Identities=29% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hcchhHHHHHHHHHHHHHHHHHHHHH---------
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS------------KNSLSEQEKRERRTMERKLSEMEVEL--------- 242 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE------------k~SLlE~EkrERRaLERKiSEmEEEL--------- 242 (271)
...+++...+.+.++.+++.++.++.+++.+++ .-.-......+++.+..++.+++..|
T Consensus 800 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 879 (1111)
T PF13514_consen 800 QEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDL 879 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccH
Q ss_pred ----------------HHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 243 ----------------KELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 243 ----------------K~L~~LRadNQRLKDENgALIRVISKL 269 (271)
..+..|+.+.+.|.++...|+.-|..+
T Consensus 880 ~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 922 (1111)
T PF13514_consen 880 EELEEELEELDPDELEAELEELEEELEELEEELEELQEERAEL 922 (1111)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=50.91 E-value=1e+02 Score=29.45 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccch
Q psy9550 228 RRTMERKLSEMEVELK----ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 228 RRaLERKiSEmEEELK----~L~~LRadNQRLKDENgAL 262 (271)
++.+.....||+...+ ....|+.+.++.|.++-.|
T Consensus 197 ~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~ 235 (264)
T PF07246_consen 197 REDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRL 235 (264)
T ss_pred hhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444532222 4455555555555554433
No 433
>KOG0432|consensus
Probab=50.81 E-value=39 Score=37.29 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+...|..+|..+|+++|+++..++..+.
T Consensus 927 d~~~e~~kl~kkl~klqk~~~~l~~r~~ 954 (995)
T KOG0432|consen 927 DPDSEIQKLAKKLEKLQKQLDKLQARIS 954 (995)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3447888888889999999888887764
No 434
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.78 E-value=91 Score=30.88 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRERRTMERKLSE 237 (271)
Q Consensus 220 LlE~EkrERRaLERKiSE 237 (271)
..|| ..|||.|||.++-
T Consensus 68 ~~el-neEkrtLeRELAR 84 (351)
T PF07058_consen 68 VQEL-NEEKRTLERELAR 84 (351)
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 4444 4567777776654
No 435
>KOG3990|consensus
Probab=50.75 E-value=85 Score=30.45 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh-hhhhcccccchhh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKAT-YSKNSLSEQEKRERRTMERKLSEM---EVELKELDQFKKE-NQRLKDENGALIR 264 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~-LEk~SLlE~EkrERRaLERKiSEm---EEELK~L~~LRad-NQRLKDENgALIR 264 (271)
......+|++++..++..|.|--.. ||+ +.+|+|| +|..|+|+++-.+ -|.|..++.-+||
T Consensus 223 h~V~i~~lkeeia~Lkk~L~qkdq~ileK--------------dkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk 288 (305)
T KOG3990|consen 223 HMVKIQKLKEEIARLKKLLHQKDQLILEK--------------DKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLK 288 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHhh--------------hhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776666666654222 222 3345554 3444666665544 6778888899999
Q ss_pred hhhccC
Q psy9550 265 VISKLS 270 (271)
Q Consensus 265 VISKLS 270 (271)
-|.+|.
T Consensus 289 ~~a~l~ 294 (305)
T KOG3990|consen 289 AIAQLR 294 (305)
T ss_pred HHHHHh
Confidence 998885
No 436
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=50.72 E-value=45 Score=27.09 Aligned_cols=67 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 176 NENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 176 ~e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
..+..-|.|-||+.++.-.+.=+.+.++..+.-++.+. |+ -.-|.+++...+..-.++..|.+++|+
T Consensus 30 ~~~~~~d~rsLye~LqenK~~Kq~efeE~~K~kn~~r~-LDedE~eFLd~v~~~~~~~E~~~~~ee~eeL~ 99 (102)
T PF10187_consen 30 APEEEYDGRSLYERLQENKAAKQEEFEEKHKLKNQFRG-LDEDEIEFLDEVEEKKRAEERQRKREEEEELE 99 (102)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHhcccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999998777665555555555433333321 11 123556655555555555555666654
No 437
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=50.69 E-value=1.4e+02 Score=27.28 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK------NSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk------~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
--+.||+--.+|.+..|.-|+--..++-++...|.+ ..|+|-|+.|-..|..=-+.+-+|+.+
T Consensus 95 sv~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqE 163 (179)
T PF14723_consen 95 SVRELYSCTVQELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQE 163 (179)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999888888888876653 358888888755554443333333333
No 438
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=50.69 E-value=52 Score=31.95 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~ 244 (271)
+.|-..+.++|.|||.|++.
T Consensus 288 RsElDe~~krL~ELrR~vr~ 307 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKS 307 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666665553
No 439
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=50.61 E-value=95 Score=26.92 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK-NSLSEQEKRERRTMERKLSEMEV 240 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk-~SLlE~EkrERRaLERKiSEmEE 240 (271)
+++....+.-...|+.+.+++.+++.+.+| .-|.+++..|-..+.....|+|.
T Consensus 91 ~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~~~e~~Ee~E~ 144 (152)
T PF07321_consen 91 AEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQQREYQEEQEQ 144 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555555555 23445555555555555555553
No 440
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=50.53 E-value=69 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+-+...+.++++.++++.+.+..+|+.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777765554
No 441
>KOG4302|consensus
Probab=50.53 E-value=1.3e+02 Score=32.03 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
-.|+.++|++.....+|..+|-.++.|++++-.+|-
T Consensus 50 ~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~ 85 (660)
T KOG4302|consen 50 EIYKRKVEEASESKARLLQEIAVIEAELNDLCSALG 85 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999999976653
No 442
>KOG0964|consensus
Probab=50.51 E-value=70 Score=35.92 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
.+.+-+|+.-+.+...+-++|+.++.+++..|.-++.+
T Consensus 250 ~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~e 287 (1200)
T KOG0964|consen 250 PEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREE 287 (1200)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456677777777888888887777777766666553
No 443
>KOG0980|consensus
Probab=50.48 E-value=97 Score=34.32 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEE 207 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~E 207 (271)
+|.+..++--.|.++..+.+++
T Consensus 432 k~t~l~~~h~~lL~K~~di~kQ 453 (980)
T KOG0980|consen 432 KYTELRQEHADLLRKYDDIQKQ 453 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 444
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=50.45 E-value=1.2e+02 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~ 246 (271)
+.|=.+|+.||.+||.+|..|.
T Consensus 95 k~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999887764
No 445
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.25 E-value=1.3e+02 Score=27.88 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q psy9550 176 NENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKE-----LDQF 248 (271)
Q Consensus 176 ~e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~-----L~~L 248 (271)
.+++.+|-..--.........|+.++.+++.++++++.... -+.+-.+ +.+..+|+++|.+....+.. +.+.
T Consensus 198 ~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l-~~~i~~l~~~i~~e~~~i~~~~~~~l~~~ 276 (362)
T TIGR01010 198 IKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSL-QARIKSLRKQIDEQRNQLSGGLGDSLNEQ 276 (362)
T ss_pred HhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHH-HHHHHHHHHHHHHHHHHhhcCCCccHHHH
Q ss_pred HHhhhhhccc
Q psy9550 249 KKENQRLKDE 258 (271)
Q Consensus 249 RadNQRLKDE 258 (271)
..+-++|+-|
T Consensus 277 ~~~~~~L~re 286 (362)
T TIGR01010 277 TADYQRLVLQ 286 (362)
T ss_pred HHHHHHHHHH
No 446
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.21 E-value=1.2e+02 Score=23.56 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEEL 242 (271)
..+..++..|.+.|+-++++++.++.++ .+++ ..+.|+.|++.|-++-+.|
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~~-----d~s~---~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQM-----DPSL---GRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccc---ChHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443 2233 2567788877776654333
No 447
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=50.11 E-value=63 Score=29.64 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 195 SRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
++|+..|..++...++...+|+. + .+|+..|+.+-.|+++.||
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~-----l-~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLES-----L-EKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444333332 1 3344445555555544443
No 448
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=50.07 E-value=1.1e+02 Score=26.93 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELK 243 (271)
Q Consensus 226 rERRaLERKiSEmEEELK 243 (271)
.-|..|||++..|++=+.
T Consensus 105 ~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 105 ERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 449
>KOG2991|consensus
Probab=49.87 E-value=36 Score=33.09 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK 243 (271)
|-|..=+.+-|-||++||.||-
T Consensus 225 ENeElG~q~s~Gria~Le~eLA 246 (330)
T KOG2991|consen 225 ENEELGHQASEGRIAELEIELA 246 (330)
T ss_pred HHHHHHhhhhcccHHHHHHHHH
Confidence 4444456677777777776663
No 450
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.87 E-value=1.3e+02 Score=28.21 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
..|+..+++.+.++..+.....+-.+|
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~~~L 347 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEMSVL 347 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555454444444444443333
No 451
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=49.86 E-value=72 Score=35.29 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+....|.+.|+.+|+...++..+....++.. .-.+....-...+|.+..+++++|++|.
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1123)
T PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204 (1123)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778877765555555555444321 0111111123456777777777777553
No 452
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.85 E-value=12 Score=30.00 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=8.8
Q ss_pred HHHHHHhhhhhcccccch
Q psy9550 245 LDQFKKENQRLKDENGAL 262 (271)
Q Consensus 245 L~~LRadNQRLKDENgAL 262 (271)
+.+|+.++.+|+.||..|
T Consensus 80 i~~L~~el~~L~~E~diL 97 (121)
T PRK09413 80 IKELQRLLGKKTMENELL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 453
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=49.78 E-value=52 Score=27.66 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
++|.+...+.=++-..++++---|++++.-++....... ..-+.-|+.|+.++|++++.|+.++...+.
T Consensus 44 R~Y~~~~l~rl~~I~~lr~~G~sL~eI~~ll~~~~~~~~-~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~ 112 (144)
T PRK13752 44 RRYGEADVTRVRFVKSAQRLGFSLDEIAELLRLEDGTHC-EEASSLAEHKLKDVREKMADLARMEAVLSE 112 (144)
T ss_pred eecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467766555555556677666667777766642111100 112345566666666666666666655443
No 454
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=49.66 E-value=1.1e+02 Score=30.17 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNS---LSEQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~S---LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
.+=++++|++++.++..++..|+... ..+--+.+...|++.+..|.+.+..|+.+-.+...
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666665555422 12223566777777888877777777666555443
No 455
>KOG0976|consensus
Probab=49.53 E-value=66 Score=35.76 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSK 203 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e 203 (271)
+|-.++|.+.+.|.+.|.+.|-+
T Consensus 44 L~aeniiqdlrserdalhe~lvd 66 (1265)
T KOG0976|consen 44 LDAENIIQDLRSERDALHESLVD 66 (1265)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34456666666666666655433
No 456
>KOG4603|consensus
Probab=49.42 E-value=52 Score=30.26 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhccc
Q psy9550 199 ETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD------QFKKENQRLKDE 258 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~------~LRadNQRLKDE 258 (271)
++|+.++.+++.+ ..-.++|..-|+.||-|||+|+ ++..+.|.||.|
T Consensus 79 eel~~ld~~i~~l-------------~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~ke 131 (201)
T KOG4603|consen 79 EELQVLDGKIVAL-------------TEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKE 131 (201)
T ss_pred HHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
No 457
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=49.38 E-value=34 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhhhcccccchhhhhhcc
Q psy9550 231 MERKLSEMEVELKELDQ-------FKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 231 LERKiSEmEEELK~L~~-------LRadNQRLKDENgALIRVISKL 269 (271)
|+.-+.-||||-.--.. ||...+..+..|.||..=|.||
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444 4444444455555555444443
No 458
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.34 E-value=1.6e+02 Score=24.65 Aligned_cols=6 Identities=0% Similarity=0.379 Sum_probs=2.3
Q ss_pred HHHHHh
Q psy9550 246 DQFKKE 251 (271)
Q Consensus 246 ~~LRad 251 (271)
.+|+.+
T Consensus 136 ~~l~~~ 141 (156)
T CHL00118 136 KSLEEQ 141 (156)
T ss_pred HHHHHH
Confidence 333333
No 459
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.13 E-value=81 Score=26.56 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHhhhhhccc
Q psy9550 229 RTMERKLSEMEVEL--KELDQFKKENQRLKDE 258 (271)
Q Consensus 229 RaLERKiSEmEEEL--K~L~~LRadNQRLKDE 258 (271)
..|+++|+|+...| +-+..|..+.+.+|.|
T Consensus 61 ~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 61 AELQAKIDEARRNLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666654333 2444555556666544
No 460
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=48.91 E-value=38 Score=30.28 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=17.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETL------SKTEEELNQVKATYSKN---SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L------~e~~~El~qlk~~LEk~---SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
...+.-||+=|-+...+.-|+--.+ +..++||.++-..|... ...|| +.|-..|+++|.-||+-.+.+..
T Consensus 70 ~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL-~~eI~~L~~~i~~le~~~~~~k~ 148 (171)
T PF04799_consen 70 KAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNEL-EDEIKQLEKEIQRLEEIQSKSKT 148 (171)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677877777665544433222 23455566655555532 23333 33444444444444444444444
Q ss_pred HH
Q psy9550 248 FK 249 (271)
Q Consensus 248 LR 249 (271)
||
T Consensus 149 Lr 150 (171)
T PF04799_consen 149 LR 150 (171)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 461
>PRK14163 heat shock protein GrpE; Provisional
Probab=48.71 E-value=1.1e+02 Score=28.21 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
++++.+.+.|+.++.+....+.-+.+++| |...-|.|...+.+.+.=+.+| |-+|++|
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L---LpVlDnL 103 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSEL---LPVLDDV 103 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHhHH
Confidence 34444555555555555554444444443 2223344444444544444443 4445544
No 462
>KOG1937|consensus
Probab=48.71 E-value=83 Score=32.56 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcccccchh
Q psy9550 225 KRERRTMERKLSE--MEVELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 225 krERRaLERKiSE--mEEELK~L~~LRadNQRLKDENgALI 263 (271)
++|-|-||.+|-- .-.-++.|++|.+|.|.+.+||.-|.
T Consensus 475 ~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~ 515 (521)
T KOG1937|consen 475 KREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLF 515 (521)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566666533 44446779999999999999999884
No 463
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.63 E-value=1.6e+02 Score=25.75 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q psy9550 207 ELNQVKATY 215 (271)
Q Consensus 207 El~qlk~~L 215 (271)
+..+++.++
T Consensus 61 e~~~~r~~~ 69 (201)
T PF12072_consen 61 EAQKLRQEL 69 (201)
T ss_pred HHHHHHHHH
Confidence 333333333
No 464
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.57 E-value=67 Score=33.25 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEEL 208 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El 208 (271)
++.-+.++..|.++.+.++++.+.++
T Consensus 354 l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 354 LKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544444443
No 465
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.56 E-value=96 Score=30.13 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
..--.|..+.+.+|.+|+.++.++.+.+.+++-
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444567788888888888888888887777653
No 466
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.48 E-value=1.2e+02 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~L 215 (271)
+.+.|+.++.+.+.++.-+.+++
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~ 48 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADL 48 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333
No 467
>KOG3859|consensus
Probab=48.28 E-value=1.7e+02 Score=29.34 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadN 252 (271)
|-..-..|++.||.++-+||||.-.+..-++.-
T Consensus 371 lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~~ 403 (406)
T KOG3859|consen 371 LKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTAA 403 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556788999999999999988877666543
No 468
>KOG2129|consensus
Probab=48.27 E-value=83 Score=32.51 Aligned_cols=12 Identities=42% Similarity=0.404 Sum_probs=6.2
Q ss_pred CcccCCCccccC
Q psy9550 60 GTSSGYGGLTLP 71 (271)
Q Consensus 60 gt~~gyg~~~lp 71 (271)
-+++|-||-++|
T Consensus 28 s~ss~~GG~~~p 39 (552)
T KOG2129|consen 28 SHSSHSGGGHEP 39 (552)
T ss_pred cccCCCCCCCCC
Confidence 345555664444
No 469
>KOG0971|consensus
Probab=48.21 E-value=61 Score=36.26 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEE 206 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~ 206 (271)
+--+++..-.++++.+|.++.+
T Consensus 290 ~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 290 KEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666554
No 470
>smart00338 BRLZ basic region leucin zipper.
Probab=48.19 E-value=1e+02 Score=22.15 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHhhhhhcccc
Q psy9550 229 RTMERKLSEMEVELK----ELDQFKKENQRLKDEN 259 (271)
Q Consensus 229 RaLERKiSEmEEELK----~L~~LRadNQRLKDEN 259 (271)
..||.++..|+.+.. .+..|+.+++.||++|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555443 3445666677666665
No 471
>KOG0964|consensus
Probab=48.15 E-value=79 Score=35.54 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhhcccccchhh
Q psy9550 225 KRERRTMERKLSEME-------------VELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 225 krERRaLERKiSEmE-------------EELK~L~~LRadNQRLKDENgALIR 264 (271)
+-.+++|+..+..+| +|++.|..|..+...|+.++.||++
T Consensus 754 ~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~ 806 (1200)
T KOG0964|consen 754 KTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE 806 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445666666655444 3445677777888888888887764
No 472
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=48.10 E-value=67 Score=29.51 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadN 252 (271)
.++.+-|+...+|..-..+.++.+.+..++++.+.+.. .+-..|+.+..+++.++....++++--
T Consensus 119 ~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~------~~le~Lqkn~~~~~k~~d~~ne~~~~v 183 (192)
T COG5374 119 RVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQ------ILLEGLQKNQEELFKLLDKYNELREQV 183 (192)
T ss_pred HHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677888899998888888888888888887777543 233456677777777776666666443
No 473
>PRK14162 heat shock protein GrpE; Provisional
Probab=48.10 E-value=1.2e+02 Score=27.32 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+.+.|+.++++.+..+.-+.++++ |..--|.+...+.+.++=+.+| |-++++|
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L---LpV~DnL 102 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDV---LPAMDNL 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhHH
Confidence 344444444444444443333333 2233344455555555544444 5666666
No 474
>KOG4571|consensus
Probab=48.07 E-value=20 Score=34.63 Aligned_cols=45 Identities=38% Similarity=0.510 Sum_probs=0.0
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 225 KRERRTM------ERKLSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 225 krERRaL------ERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
+++++.+ +||-+|+|.-+-+++.|-..|++|||-=+-|=|-|--|
T Consensus 231 kr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 231 KRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.94 E-value=51 Score=26.17 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRV 265 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRV 265 (271)
+.+.+-.+++.++.++..+ ...+..||..+.|++-=+++|..|..|.-=.|-=.+.||+.
T Consensus 4 ~~q~~~~~~q~~q~~~~~l-------------~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~ 63 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAV-------------ATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKT 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhhee
No 476
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.74 E-value=1.6e+02 Score=24.19 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELKELDQ 247 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~ 247 (271)
.++.|+.-++.++|.|++
T Consensus 75 ~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 75 ELKERKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554443
No 477
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=47.66 E-value=49 Score=27.42 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKN---SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~---SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
.|.+.-.+.=++-..|+++---|.+++.-|+-. .-... ..-+..|++++.++++++..|..++...+.+.+
T Consensus 39 ~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 39 LYTEQDLQRLRFIRRAKQLGFTLEEIRELLSIRLDPEHHTC-QEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454433333333345555555566666555411 00011 112455788888888888888777776665543
No 478
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.61 E-value=6.2 Score=40.29 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhh
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVIS 267 (271)
+.||+...++..|+|.|-+....++=||+||..|-+=+.
T Consensus 260 ~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~ 298 (722)
T PF05557_consen 260 RELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLE 298 (722)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777777777777777655443
No 479
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=47.61 E-value=1.1e+02 Score=29.27 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
+...|++.+.++++++..+.+...+.++|+-|
T Consensus 332 ~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re 363 (498)
T TIGR03007 332 RVAELTARIERLESLLRTIPEVEAELTQLNRD 363 (498)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34456666666777777666666666666544
No 480
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=47.57 E-value=76 Score=24.90 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
.|.+.-.+.=++-..|+.+---+++++.-++.... ..-...++.++.+|+++++.|+.++...+.+
T Consensus 39 ~Y~~~~i~~l~~I~~lr~~G~sl~~i~~l~~~~~~----~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 39 YYSAEQLERLNRIKYLRDLGFPLEEIKEILDADND----DELRKLLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333334444444456666655543221 3345567888888888888887777655443
No 481
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=47.50 E-value=1.4e+02 Score=23.48 Aligned_cols=34 Identities=9% Similarity=0.341 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
.|..-...+......++..|..++.++...+..+
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l 98 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERL 98 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555666655555555443
No 482
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=47.45 E-value=11 Score=28.80 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 226 RERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
.|-..|..+|+||++... +|..||+.||.
T Consensus 14 EEVevLK~~I~eL~~~n~---~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNS---QLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 344556666776666543 34456666653
No 483
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.44 E-value=51 Score=28.15 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELN 209 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~ 209 (271)
...+..++++++++.+++..
T Consensus 123 li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 484
>PRK14161 heat shock protein GrpE; Provisional
Probab=47.32 E-value=1.4e+02 Score=26.48 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+..+-+..+.+.|+.++++.+.++.-+++++| |...-|.+...+.+.++=+.+| |-++++|
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~L---Lpv~Dnl 82 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKEL---LNVSDNL 82 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhHH
Confidence 34444555556666666666655555555554 2333344455555555544444 5566666
No 485
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.84 E-value=72 Score=32.03 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRT--MERKLSEMEVELKELDQF 248 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRa--LERKiSEmEEELK~L~~L 248 (271)
++++||++||.+..++..++.++ +.|.-. +..|+.-+|+..+.+.+.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL-------------E~e~l~s~V~E~vet~dv~~d~i~Ki 84 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL-------------ENEMLRSHVCEDVETNDVIYDKIVKI 84 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH-------------HHHhhhhhhhhHHHHHHHHHHHHHHH
No 486
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=46.77 E-value=1.6e+02 Score=23.92 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYS-----KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+|......+.......+..|..++.++.+.+..+. +.++..+ +||+.-+.+..+.-.|-|.++++
T Consensus 68 ~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL--~ek~~~~~~~~e~r~EQk~~DE~ 137 (147)
T PRK05689 68 NYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETL--QERYQTEARLAENKREQKQMDEF 137 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHH
No 487
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.74 E-value=1.8e+02 Score=24.68 Aligned_cols=70 Identities=27% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccc
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLS--------EQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLKDE 258 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLl--------E~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLKDE 258 (271)
++.....++..+++.++.++...+.+++|.-.. +.=..|-..+++++..+++++. .-..+|.|.+|...|
T Consensus 125 ~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~ 203 (236)
T PF09325_consen 125 EALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.73 E-value=2e+02 Score=26.74 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS----KNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE-NGA 261 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE----k~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE-NgA 261 (271)
......-.+-|..+|++++.++.+++.+|. ++-+.+. ..+-.++..-+++|+.++..++.=-++.+.--.+ |..
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q ss_pred hhhhhhcc
Q psy9550 262 LIRVISKL 269 (271)
Q Consensus 262 LIRVISKL 269 (271)
++.+-.++
T Consensus 244 v~~l~~~i 251 (362)
T TIGR01010 244 VPSLQARI 251 (362)
T ss_pred hHHHHHHH
No 489
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.69 E-value=1.1e+02 Score=32.25 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS-----KNSLSEQEKRERRTMERKLSEMEVE-----------LKELDQFKK 250 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLlE~EkrERRaLERKiSEmEEE-----------LK~L~~LRa 250 (271)
|.+...+.+.+..++.....++..+...++ ...+.+........+++++.+++.. ++.+.++..
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~ 389 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred hhhhhcccccchhhhhhcc
Q psy9550 251 ENQRLKDENGALIRVISKL 269 (271)
Q Consensus 251 dNQRLKDENgALIRVISKL 269 (271)
..|+++++..++++-+-++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~ 408 (908)
T COG0419 390 AIQELKEELAELSAALEEI 408 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 490
>PRK14139 heat shock protein GrpE; Provisional
Probab=46.62 E-value=1.3e+02 Score=26.90 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+.+..+.+.|+.++.+.+..+--+.+++| |..--|.+...+.+.++=+.+| |-++++|.
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~L---Lpv~DnLe 96 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESL---LPVKDSLE 96 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhHHH
No 491
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.60 E-value=1.3e+02 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.317 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhcccc
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKK---ENQRLKDEN 259 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRa---dNQRLKDEN 259 (271)
|...++....+...+..++...+.++..-+..++. +...++..+..++++++.+..+.. +...+..++
T Consensus 138 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (457)
T TIGR01000 138 YRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEK---------TKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFN 208 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q ss_pred cch
Q psy9550 260 GAL 262 (271)
Q Consensus 260 gAL 262 (271)
..+
T Consensus 209 ~~~ 211 (457)
T TIGR01000 209 PYQ 211 (457)
T ss_pred cHH
No 492
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=46.58 E-value=90 Score=32.45 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
|+|+++- ++=|.=|..++++.=+++.+| |.++..+++|+.++|.||..+..
T Consensus 355 ~~r~~v~--nsI~kcLe~qIn~qf~tIe~L-------------k~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 355 AFRDSVS--NSINKCLEGQINNQFDTIEDL-------------KEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.57 E-value=1.1e+02 Score=28.93 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVEL 242 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEEL 242 (271)
.+...+=+.+ ++..|+..++.++.+++.|+.++...+.... ..+-....+||+++.-+-...
T Consensus 44 ~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~--~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 44 GESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR--RSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred Ccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHhHHHHHHHHHHHHHHHh
No 494
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.40 E-value=1.3e+02 Score=27.46 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhccc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK----KENQRLKDE 258 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR----adNQRLKDE 258 (271)
.+.++....-+.-+..|+....++.+.+..|+..+....+.+++ |+.++.+.+.++..|..-+ .+..+|+.+
T Consensus 36 ~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~--Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 36 EELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ--LEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=46.30 E-value=6.6 Score=41.46 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+.++.-|++....++.|.++.+.++.+|.++..++. ...+.++ .+.+|.||..+.||+.+|..+.+
T Consensus 415 ~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eL-ek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 415 FKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHEL-EKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.19 E-value=1.5e+02 Score=24.12 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+.+..-+....+|+.|.+..-..+.++.++|.++....- +-+.|+....+++.+++.+..
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~------~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE------ELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHc
No 497
>KOG0962|consensus
Probab=46.16 E-value=90 Score=35.56 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhccccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRLKDENG 260 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRLKDENg 260 (271)
+++...+...|+.+...+.+++.+++..+.+. .-++....+.+.-++++.+|++.+. .+.+|.++-+.|..+-.
T Consensus 263 l~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~ 342 (1294)
T KOG0962|consen 263 LEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKT 342 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhccC
Q psy9550 261 ALIRVISKLS 270 (271)
Q Consensus 261 ALIRVISKLS 270 (271)
-|+.++++|+
T Consensus 343 ~~~~~~~~lq 352 (1294)
T KOG0962|consen 343 ELDLEQSELQ 352 (1294)
T ss_pred HHHHHHHHHH
No 498
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.11 E-value=1.2e+02 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.+.+++..+++.++++.++.+..+ ++-..++|.++.++.+.|+.|.+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~l-------------E~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKL-------------EKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=46.05 E-value=55 Score=26.70 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSE--QEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE--~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
..|.+.-.+.=++-..|+++---|++++.-++...-.. .-..-...|+.++.++++++..|+.++...+.+.+
T Consensus 38 R~Y~~~~l~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (131)
T TIGR02043 38 RLYTDEDQKRLRFILKAKELGFTLDEIKELLSIKLDATEHSCAEVKAIVDAKLELVDEKINELTKIRRSLKKLSD 112 (131)
T ss_pred eecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.01 E-value=74 Score=31.79 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
|+..+++|++|+..|.+.--.=-+. .+.-+.+-|+++-+-|||-..+.+-||-.-|
T Consensus 311 ~~~~RQ~N~~L~~~L~e~~~R~~~~-------------ER~~~~~sR~L~~~Re~LVsAQ~~lAE~D~L 366 (402)
T COG3551 311 YTAQRQLNDGLRDRLLEAGARDEQN-------------ERAMRELSRRLSVCREELVSAQRNLAETDNL 366 (402)
T ss_pred HHHHHHhhhhHHHHHHHhhcchhhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!