Query psy9550
Match_columns 271
No_of_seqs 75 out of 77
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:27:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 96.7 0.007 2.4E-07 52.6 9.1 43 219-262 131-173 (189)
2 3s9g_A Protein hexim1; cyclin 95.8 0.032 1.1E-06 45.1 7.5 30 230-262 62-91 (104)
3 2dfs_A Myosin-5A; myosin-V, in 95.4 0.029 1E-06 58.2 7.7 42 225-266 1004-1046(1080)
4 3hnw_A Uncharacterized protein 95.3 0.091 3.1E-06 43.1 8.9 58 187-245 70-129 (138)
5 3oja_B Anopheles plasmodium-re 94.8 0.079 2.7E-06 48.8 7.8 28 184-211 462-489 (597)
6 2v71_A Nuclear distribution pr 94.5 0.2 7E-06 43.5 9.4 37 181-217 13-49 (189)
7 2yy0_A C-MYC-binding protein; 94.3 0.068 2.3E-06 37.9 5.0 31 187-217 21-51 (53)
8 3mq9_A Bone marrow stromal ant 94.3 0.29 9.9E-06 44.3 10.3 59 197-256 402-470 (471)
9 3hnw_A Uncharacterized protein 93.8 0.33 1.1E-05 39.7 8.8 61 183-244 73-135 (138)
10 2eqb_B RAB guanine nucleotide 93.7 0.43 1.5E-05 37.9 8.9 60 186-245 6-95 (97)
11 1grj_A GREA protein; transcrip 92.7 0.5 1.7E-05 38.7 8.3 64 185-248 9-75 (158)
12 2f23_A Anti-cleavage anti-GREA 92.5 0.42 1.4E-05 38.9 7.6 61 187-247 12-74 (156)
13 3oja_A Leucine-rich immune mol 92.5 0.39 1.3E-05 43.6 8.0 18 244-261 443-460 (487)
14 3iox_A AGI/II, PA; alpha helix 92.4 0.71 2.4E-05 45.3 10.2 86 182-268 31-122 (497)
15 2v66_B Nuclear distribution pr 91.9 1.4 4.7E-05 35.6 9.7 34 219-253 78-111 (111)
16 3tnu_A Keratin, type I cytoske 91.8 0.2 6.8E-06 40.0 4.7 32 230-264 81-112 (131)
17 3tnu_B Keratin, type II cytosk 91.7 0.29 1E-05 38.8 5.6 71 191-264 35-110 (129)
18 1go4_E MAD1 (mitotic arrest de 91.4 0.52 1.8E-05 37.5 6.6 30 187-216 14-43 (100)
19 3tnu_A Keratin, type I cytoske 91.2 0.53 1.8E-05 37.5 6.6 80 180-260 12-101 (131)
20 2p4v_A Transcription elongatio 91.2 1.3 4.3E-05 36.5 9.1 62 185-246 9-73 (158)
21 3oja_B Anopheles plasmodium-re 90.5 1.1 3.6E-05 41.3 8.8 25 192-216 463-487 (597)
22 2v4h_A NF-kappa-B essential mo 90.4 2.3 7.7E-05 34.6 9.6 30 227-256 81-110 (110)
23 4h22_A Leucine-rich repeat fli 90.3 0.79 2.7E-05 36.9 6.8 66 183-248 12-87 (103)
24 3i00_A HIP-I, huntingtin-inter 90.2 1.2 4E-05 36.1 7.8 25 185-209 15-39 (120)
25 1cii_A Colicin IA; bacteriocin 89.9 1.4 4.9E-05 43.7 9.6 90 177-267 334-432 (602)
26 1vcs_A Vesicle transport throu 89.8 0.63 2.2E-05 35.9 5.8 81 178-261 9-99 (102)
27 1ic2_A Tropomyosin alpha chain 89.3 4 0.00014 30.1 9.6 72 184-261 5-77 (81)
28 3o0z_A RHO-associated protein 89.3 2.1 7E-05 36.8 9.0 44 219-262 76-123 (168)
29 2j5u_A MREC protein; bacterial 89.3 0.14 4.9E-06 44.8 2.0 31 227-257 27-57 (255)
30 3mq7_A Bone marrow stromal ant 88.7 3.2 0.00011 34.3 9.4 75 187-262 20-104 (121)
31 2jee_A YIIU; FTSZ, septum, coi 88.7 1.6 5.4E-05 33.7 7.1 14 248-261 53-66 (81)
32 2eqb_B RAB guanine nucleotide 88.5 3.6 0.00012 32.7 9.3 56 191-246 4-60 (97)
33 1c1g_A Tropomyosin; contractIl 87.6 4.5 0.00015 31.5 9.3 26 187-212 8-33 (284)
34 2ocy_A RAB guanine nucleotide 87.5 4.1 0.00014 34.4 9.6 47 220-269 102-148 (154)
35 3ol1_A Vimentin; structural ge 87.5 5.7 0.00019 31.4 10.0 33 184-216 26-58 (119)
36 2e7s_A RAB guanine nucleotide 87.4 0.4 1.4E-05 40.0 3.4 27 220-246 90-116 (135)
37 3s9g_A Protein hexim1; cyclin 87.2 1.5 5E-05 35.5 6.4 64 180-264 12-86 (104)
38 3u1c_A Tropomyosin alpha-1 cha 87.1 5.3 0.00018 30.8 9.4 75 187-267 11-96 (101)
39 2fxo_A Myosin heavy chain, car 87.0 3.9 0.00013 32.4 8.8 54 193-246 35-96 (129)
40 1ci6_A Transcription factor AT 86.8 4.4 0.00015 29.0 8.1 25 225-249 36-60 (63)
41 1t6f_A Geminin; coiled-coil, c 86.2 1.1 3.8E-05 30.4 4.4 28 186-214 2-29 (37)
42 3a7p_A Autophagy protein 16; c 86.1 4.2 0.00015 34.5 9.0 13 251-263 118-130 (152)
43 2lw1_A ABC transporter ATP-bin 86.1 2.1 7.3E-05 31.9 6.5 60 189-249 19-86 (89)
44 2j5u_A MREC protein; bacterial 85.4 0.24 8.1E-06 43.4 1.1 23 189-211 23-45 (255)
45 3cve_A Homer protein homolog 1 85.3 7.7 0.00026 29.2 9.1 63 188-259 10-72 (72)
46 3ghg_A Fibrinogen alpha chain; 84.7 2.4 8.3E-05 42.2 7.8 76 181-256 60-151 (562)
47 2zxx_A Geminin; coiled-coil, c 84.6 3.7 0.00013 31.6 7.2 29 185-213 27-55 (79)
48 2dfs_A Myosin-5A; myosin-V, in 84.4 0.43 1.5E-05 49.6 2.6 13 229-241 980-992 (1080)
49 3cvf_A Homer-3, homer protein 84.3 8 0.00027 29.6 9.0 63 188-259 16-78 (79)
50 4etp_A Kinesin-like protein KA 83.9 1.1 3.8E-05 41.6 4.9 63 189-251 7-70 (403)
51 1go4_E MAD1 (mitotic arrest de 83.6 3.3 0.00011 33.0 6.8 31 181-211 15-45 (100)
52 2i1j_A Moesin; FERM, coiled-co 83.5 0.8 2.7E-05 44.4 3.9 63 184-246 327-397 (575)
53 3bas_A Myosin heavy chain, str 83.5 11 0.00038 28.3 9.5 25 220-245 58-82 (89)
54 3tnu_B Keratin, type II cytosk 83.5 6.8 0.00023 30.9 8.6 82 179-261 9-100 (129)
55 3swk_A Vimentin; cytoskeleton, 83.4 11 0.00037 28.5 9.4 63 182-245 4-82 (86)
56 3o0z_A RHO-associated protein 83.4 8 0.00027 33.2 9.5 33 226-258 118-155 (168)
57 3na7_A HP0958; flagellar bioge 83.3 7.2 0.00025 33.5 9.4 17 227-243 98-114 (256)
58 2v4h_A NF-kappa-B essential mo 83.2 3.8 0.00013 33.3 7.1 25 222-246 79-103 (110)
59 3u59_A Tropomyosin beta chain; 83.1 11 0.00037 28.8 9.4 77 184-266 8-95 (101)
60 2w83_C C-JUN-amino-terminal ki 83.0 3 0.0001 32.2 6.1 61 185-245 9-77 (77)
61 1i84_S Smooth muscle myosin he 82.7 5.3 0.00018 41.4 9.7 14 229-242 923-936 (1184)
62 3jsv_C NF-kappa-B essential mo 82.2 5.8 0.0002 31.4 7.7 33 226-258 58-90 (94)
63 1uii_A Geminin; human, DNA rep 82.0 2.6 8.8E-05 32.8 5.4 32 185-216 39-70 (83)
64 3vkg_A Dynein heavy chain, cyt 81.6 5.1 0.00017 46.7 9.8 35 182-216 1903-1944(3245)
65 1hjb_A Ccaat/enhancer binding 81.2 8.6 0.00029 29.6 8.1 26 225-250 49-74 (87)
66 3kin_B Kinesin heavy chain; mo 81.1 1.8 6.3E-05 34.2 4.5 35 178-212 82-116 (117)
67 1hjb_A Ccaat/enhancer binding 80.6 2.4 8.2E-05 32.7 4.8 30 186-215 44-73 (87)
68 3fpp_A Macrolide-specific effl 80.3 11 0.00036 32.3 9.3 38 180-217 64-101 (341)
69 1wlq_A Geminin; coiled-coil; 2 80.2 3.1 0.0001 32.4 5.3 32 185-216 31-62 (83)
70 1deb_A APC protein, adenomatou 80.0 6.5 0.00022 28.6 6.6 16 231-246 36-51 (54)
71 3ol1_A Vimentin; structural ge 79.5 11 0.00039 29.6 8.6 76 184-262 15-102 (119)
72 1am9_A Srebp-1A, protein (ster 79.4 4.3 0.00015 30.1 5.7 42 216-257 40-81 (82)
73 3lay_A Zinc resistance-associa 79.3 4.4 0.00015 34.4 6.5 59 180-244 73-131 (175)
74 3a7p_A Autophagy protein 16; c 79.1 13 0.00045 31.5 9.3 54 192-245 68-129 (152)
75 4dk0_A Putative MACA; alpha-ha 78.7 9.8 0.00033 32.8 8.6 37 180-216 65-101 (369)
76 3u06_A Protein claret segregat 78.6 1.7 6E-05 40.6 4.2 60 190-250 8-69 (412)
77 3qne_A Seryl-tRNA synthetase, 78.6 7.7 0.00026 37.5 8.7 60 185-247 40-99 (485)
78 2jn6_A Protein CGL2762, transp 78.2 1.1 3.9E-05 32.2 2.3 25 241-265 64-88 (97)
79 1gd2_E Transcription factor PA 78.0 1.6 5.5E-05 32.5 3.0 31 229-262 32-62 (70)
80 3na7_A HP0958; flagellar bioge 77.7 13 0.00043 32.0 9.0 21 191-211 96-116 (256)
81 1x79_B RAB GTPase binding effe 77.1 17 0.00058 29.3 9.0 29 235-263 72-104 (112)
82 1i84_S Smooth muscle myosin he 76.9 9.8 0.00033 39.4 9.4 19 227-245 914-932 (1184)
83 2dq0_A Seryl-tRNA synthetase; 76.3 8.3 0.00028 36.4 8.1 61 185-248 38-98 (455)
84 1ik9_A DNA repair protein XRCC 76.1 18 0.00062 31.3 9.6 31 187-217 134-164 (213)
85 3m91_A Proteasome-associated A 76.1 5.8 0.0002 28.1 5.3 36 182-217 13-48 (51)
86 2wvr_A Geminin; DNA replicatio 75.9 11 0.00037 33.6 8.2 43 175-217 90-140 (209)
87 4gkw_A Spindle assembly abnorm 75.7 18 0.00063 30.8 9.2 29 186-214 40-68 (167)
88 1gu4_A CAAT/enhancer binding p 75.6 3.3 0.00011 31.3 4.2 24 225-248 49-72 (78)
89 2zqm_A Prefoldin beta subunit 75.2 21 0.00072 26.5 8.6 28 187-214 15-42 (117)
90 2oto_A M protein; helical coil 75.0 21 0.00073 28.7 9.2 21 189-209 26-46 (155)
91 1x8y_A Lamin A/C; structural p 74.6 3.5 0.00012 31.0 4.2 20 193-212 4-23 (86)
92 2ocy_A RAB guanine nucleotide 74.6 10 0.00035 32.0 7.4 22 224-245 70-91 (154)
93 2fxo_A Myosin heavy chain, car 74.6 23 0.00079 27.9 9.1 19 227-245 105-123 (129)
94 1t2k_D Cyclic-AMP-dependent tr 74.6 5.3 0.00018 28.0 4.8 23 225-247 35-57 (61)
95 1gd2_E Transcription factor PA 74.2 2.2 7.5E-05 31.7 2.9 33 232-267 28-60 (70)
96 2qyw_A Vesicle transport throu 74.1 18 0.00062 27.7 8.2 64 181-244 22-96 (102)
97 3oja_A Leucine-rich immune mol 73.9 20 0.00068 32.5 9.7 27 185-211 421-447 (487)
98 1lrz_A FEMA, factor essential 73.9 5.3 0.00018 36.2 5.9 60 194-260 249-308 (426)
99 3u1c_A Tropomyosin alpha-1 cha 73.3 8.9 0.0003 29.5 6.2 14 227-240 87-100 (101)
100 1gu4_A CAAT/enhancer binding p 73.1 14 0.00047 27.9 7.1 33 231-266 41-73 (78)
101 2lf0_A Uncharacterized protein 72.5 3.3 0.00011 34.3 3.9 51 188-239 6-56 (123)
102 1gk4_A Vimentin; intermediate 72.3 15 0.00052 27.2 7.2 11 231-241 31-41 (84)
103 1l8d_A DNA double-strand break 72.3 28 0.00095 26.0 9.9 28 187-214 12-39 (112)
104 2v66_B Nuclear distribution pr 72.0 33 0.0011 27.5 9.5 26 182-207 7-32 (111)
105 1wle_A Seryl-tRNA synthetase; 71.6 18 0.00062 34.8 9.3 58 189-247 81-144 (501)
106 1l8d_A DNA double-strand break 70.8 25 0.00085 26.2 8.1 30 187-216 5-34 (112)
107 3qh9_A Liprin-beta-2; coiled-c 70.5 22 0.00074 27.6 7.7 34 225-258 39-76 (81)
108 1x79_B RAB GTPase binding effe 70.4 20 0.00068 29.0 7.9 29 228-256 72-104 (112)
109 1ci6_A Transcription factor AT 70.0 7 0.00024 27.9 4.7 27 188-214 33-59 (63)
110 3u59_A Tropomyosin beta chain; 69.8 14 0.00047 28.2 6.5 14 227-240 87-100 (101)
111 3q8t_A Beclin-1; autophagy, AT 69.0 37 0.0013 26.0 8.8 58 188-245 14-79 (96)
112 3nmd_A CGMP dependent protein 68.8 19 0.00064 27.3 6.9 14 230-243 44-57 (72)
113 2ic6_A Nucleocapsid protein; h 68.7 28 0.00095 26.7 8.0 54 193-246 6-72 (78)
114 2wt7_A Proto-oncogene protein 68.2 8.8 0.0003 27.2 4.8 24 225-248 36-59 (63)
115 4emc_A Monopolin complex subun 67.1 34 0.0012 30.0 9.2 31 186-216 21-51 (190)
116 1fxk_A Prefoldin; archaeal pro 66.2 36 0.0012 24.9 8.6 27 187-213 10-36 (107)
117 3swk_A Vimentin; cytoskeleton, 66.1 13 0.00046 28.0 5.8 68 194-261 2-81 (86)
118 2k48_A Nucleoprotein; viral pr 66.0 41 0.0014 27.2 8.8 56 191-246 34-102 (107)
119 3k29_A Putative uncharacterize 65.7 50 0.0017 28.5 9.9 35 183-217 28-66 (169)
120 2a26_A Calcyclin-binding prote 65.4 14 0.00047 26.0 5.3 37 201-237 6-45 (50)
121 3d5a_X RF1, peptide chain rele 65.4 22 0.00074 33.5 8.2 27 219-245 69-95 (354)
122 3vkg_A Dynein heavy chain, cyt 65.3 21 0.00072 41.8 9.5 19 226-244 2056-2074(3245)
123 3q8t_A Beclin-1; autophagy, AT 64.9 35 0.0012 26.2 8.0 49 193-247 5-53 (96)
124 1gax_A Valrs, valyl-tRNA synth 64.9 13 0.00045 37.7 7.1 32 178-216 793-824 (862)
125 3lss_A Seryl-tRNA synthetase; 64.9 25 0.00086 33.9 8.7 66 183-248 42-133 (484)
126 4dnd_A Syntaxin-10, SYN10; str 64.5 34 0.0012 27.6 8.2 25 182-206 64-88 (130)
127 2w6b_A RHO guanine nucleotide 64.4 13 0.00045 27.2 5.1 37 196-238 14-50 (56)
128 2f1m_A Acriflavine resistance 63.6 62 0.0021 26.7 9.9 39 180-218 55-93 (277)
129 3u06_A Protein claret segregat 62.9 15 0.0005 34.5 6.5 24 193-216 4-27 (412)
130 2l5g_B Putative uncharacterize 62.5 15 0.0005 25.6 4.9 16 232-247 22-37 (42)
131 2lw1_A ABC transporter ATP-bin 62.4 9.8 0.00033 28.3 4.3 32 220-251 16-47 (89)
132 1jnm_A Proto-oncogene C-JUN; B 62.4 5.1 0.00017 28.2 2.6 22 225-246 35-56 (62)
133 2xnx_M M protein, M1-BC1; cell 62.2 52 0.0018 27.8 9.1 38 222-262 76-113 (146)
134 3m9b_A Proteasome-associated A 61.9 7.1 0.00024 35.3 4.1 13 244-256 83-95 (251)
135 1deq_A Fibrinogen (alpha chain 61.5 46 0.0016 32.0 9.7 33 181-213 63-95 (390)
136 1t2k_D Cyclic-AMP-dependent tr 60.6 39 0.0013 23.4 8.1 15 248-262 41-55 (61)
137 4fi5_A Nucleoprotein; structur 60.3 50 0.0017 27.0 8.4 65 179-247 20-90 (113)
138 2efr_A General control protein 60.2 46 0.0016 27.9 8.5 16 231-246 75-90 (155)
139 1lwu_C Fibrinogen gamma chain; 60.1 26 0.0009 32.2 7.6 45 189-246 9-53 (323)
140 1dh3_A Transcription factor CR 60.0 8.4 0.00029 27.0 3.4 28 235-265 24-51 (55)
141 3bas_A Myosin heavy chain, str 59.7 48 0.0016 24.8 7.8 57 189-251 18-74 (89)
142 2dq3_A Seryl-tRNA synthetase; 59.0 10 0.00034 35.4 4.7 23 225-247 74-96 (425)
143 4etp_A Kinesin-like protein KA 58.9 13 0.00046 34.4 5.5 21 193-213 4-24 (403)
144 3a7o_A Autophagy protein 16; c 58.6 24 0.00082 27.1 5.9 48 193-241 19-75 (75)
145 2ve7_C Kinetochore protein NUF 58.5 9 0.00031 33.7 4.1 61 185-258 141-205 (250)
146 3hhm_B NISH2 P85alpha; PI3KCA, 58.4 47 0.0016 30.8 9.1 26 224-249 231-256 (373)
147 3iv1_A Tumor susceptibility ge 58.1 48 0.0016 25.3 7.5 17 196-212 15-31 (78)
148 1jnm_A Proto-oncogene C-JUN; B 57.9 33 0.0011 24.0 6.2 15 248-262 41-55 (62)
149 1nkp_B MAX protein, MYC proto- 57.8 36 0.0012 24.7 6.6 42 218-269 39-80 (83)
150 2p22_A Suppressor protein STP2 57.4 36 0.0012 29.1 7.5 23 225-247 62-84 (174)
151 1xaw_A Occludin; coiled-coil, 56.2 87 0.003 26.1 10.2 39 179-217 46-84 (140)
152 3sde_A Paraspeckle component 1 55.6 17 0.00059 30.0 5.2 34 220-253 223-257 (261)
153 1f5n_A Interferon-induced guan 55.1 49 0.0017 32.4 9.0 32 228-259 547-583 (592)
154 1wlq_A Geminin; coiled-coil; 2 54.9 15 0.00052 28.5 4.3 23 233-255 52-74 (83)
155 1t3j_A Mitofusin 1; coiled coi 54.7 10 0.00036 29.9 3.5 35 177-211 32-66 (96)
156 3swf_A CGMP-gated cation chann 54.2 49 0.0017 25.2 6.9 64 190-262 5-69 (74)
157 3viq_A SWI5-dependent recombin 54.1 14 0.00048 29.8 4.2 23 191-213 6-28 (122)
158 2aze_B Transcription factor E2 53.6 28 0.00095 27.3 5.8 27 227-254 21-47 (106)
159 3a5t_A Transcription factor MA 53.3 4.4 0.00015 32.4 1.1 32 235-269 60-91 (107)
160 1u2m_A Histone-like protein HL 53.1 1.1 3.8E-05 35.0 -2.4 48 192-243 30-77 (143)
161 2ke4_A CDC42-interacting prote 52.9 58 0.002 25.2 7.4 20 193-212 16-35 (98)
162 1ses_A Seryl-tRNA synthetase; 52.9 24 0.00083 32.8 6.2 23 225-247 70-92 (421)
163 2wuj_A Septum site-determining 52.8 7.4 0.00025 27.3 2.1 19 187-205 36-54 (57)
164 2e7s_A RAB guanine nucleotide 52.6 20 0.00067 29.9 4.9 53 187-245 27-79 (135)
165 3mov_A Lamin-B1; LMNB1, B-type 52.5 13 0.00045 28.7 3.7 13 194-206 21-33 (95)
166 3onj_A T-snare VTI1; helix, HA 52.4 67 0.0023 24.2 7.6 73 181-256 8-93 (97)
167 3mq9_A Bone marrow stromal ant 52.4 96 0.0033 27.9 9.8 30 229-258 432-462 (471)
168 3iv1_A Tumor susceptibility ge 52.3 76 0.0026 24.2 8.3 7 195-201 10-16 (78)
169 3m9b_A Proteasome-associated A 51.7 12 0.00041 33.9 3.8 27 190-216 66-92 (251)
170 1ysm_A Calcyclin-binding prote 51.6 36 0.0012 25.6 5.9 37 201-237 5-44 (77)
171 1dh3_A Transcription factor CR 51.4 12 0.00042 26.1 3.1 26 230-258 26-51 (55)
172 2bnx_A Diaphanous protein homo 51.3 2.1 7E-05 39.3 -1.2 32 225-256 353-385 (386)
173 2zxx_A Geminin; coiled-coil, c 50.8 20 0.0007 27.4 4.4 40 227-269 35-77 (79)
174 3etw_A Adhesin A; antiparallel 50.6 58 0.002 26.4 7.3 22 227-248 69-90 (119)
175 2oto_A M protein; helical coil 50.3 96 0.0033 24.8 9.8 18 188-205 60-77 (155)
176 3w03_C DNA repair protein XRCC 50.0 20 0.0007 30.9 4.8 30 187-216 154-183 (184)
177 3opc_A Uncharacterized protein 49.4 61 0.0021 25.3 7.2 27 238-264 90-116 (154)
178 2oqq_A Transcription factor HY 49.2 25 0.00086 24.4 4.2 33 220-256 5-37 (42)
179 1q08_A Zn(II)-responsive regul 49.1 19 0.00064 26.0 3.9 28 228-255 41-68 (99)
180 2vkl_A RV0948C/MT0975; helical 48.5 60 0.002 24.3 6.7 19 193-211 13-31 (90)
181 2jee_A YIIU; FTSZ, septum, coi 48.5 90 0.0031 23.9 9.0 59 186-245 7-67 (81)
182 2ve7_C Kinetochore protein NUF 48.4 15 0.0005 32.3 3.8 17 227-243 163-179 (250)
183 2ic9_A Nucleocapsid protein; h 48.3 1E+02 0.0035 24.5 8.8 54 194-247 7-73 (96)
184 3ni0_A Bone marrow stromal ant 48.0 1.1E+02 0.0036 24.6 8.5 59 189-247 15-81 (99)
185 4h22_A Leucine-rich repeat fli 47.9 1.1E+02 0.0036 24.6 8.7 68 186-257 10-79 (103)
186 2p32_A Heat shock 70 kDa prote 47.1 8.8 0.0003 29.4 1.9 14 227-240 47-60 (120)
187 1deq_A Fibrinogen (alpha chain 47.1 88 0.003 30.1 9.0 14 238-251 181-194 (390)
188 4ani_A Protein GRPE; chaperone 47.0 65 0.0022 28.1 7.6 24 224-250 101-124 (213)
189 1nkp_B MAX protein, MYC proto- 46.9 19 0.00064 26.2 3.6 8 231-238 59-66 (83)
190 3ra3_A P1C; coiled coil domain 46.7 19 0.00066 22.9 3.1 20 225-244 6-25 (28)
191 1q06_A Transcriptional regulat 45.7 24 0.00082 27.6 4.3 28 229-256 82-109 (135)
192 3mq7_A Bone marrow stromal ant 45.7 33 0.0011 28.4 5.1 11 245-255 94-104 (121)
193 2ve7_A Kinetochore protein HEC 45.6 16 0.00055 32.9 3.7 22 227-248 186-207 (315)
194 3fpp_A Macrolide-specific effl 45.6 1.2E+02 0.0041 25.7 8.9 26 188-213 79-104 (341)
195 2xv5_A Lamin-A/C; structural p 45.5 21 0.00071 26.6 3.7 25 191-215 4-28 (74)
196 2yy0_A C-MYC-binding protein; 45.1 27 0.00091 24.5 4.0 23 191-213 18-40 (53)
197 4dk0_A Putative MACA; alpha-ha 44.7 1E+02 0.0034 26.5 8.4 24 193-216 71-94 (369)
198 2k48_A Nucleoprotein; viral pr 44.6 1.2E+02 0.0042 24.5 8.7 17 199-215 35-51 (107)
199 3l4q_C Phosphatidylinositol 3- 44.5 70 0.0024 27.3 7.3 53 192-250 96-148 (170)
200 1g6u_A Domain swapped dimer; d 44.1 75 0.0026 22.3 6.1 12 245-256 36-47 (48)
201 4ati_A MITF, microphthalmia-as 44.0 16 0.00054 28.9 3.0 42 215-256 63-104 (118)
202 1ij5_A Plasmodial specific LAV 44.0 1.2E+02 0.004 26.3 8.8 45 225-269 47-99 (323)
203 3lof_A Heat shock 70 kDa prote 44.0 38 0.0013 25.3 5.0 16 227-242 38-53 (113)
204 4b9q_A Chaperone protein DNAK; 43.5 62 0.0021 30.8 7.5 32 225-256 559-592 (605)
205 1joc_A EEA1, early endosomal a 43.5 23 0.0008 27.9 3.9 21 240-260 36-56 (125)
206 4b4t_K 26S protease regulatory 43.3 35 0.0012 32.0 5.7 64 195-264 45-111 (428)
207 2f1m_A Acriflavine resistance 43.0 53 0.0018 27.1 6.2 28 191-218 59-86 (277)
208 1am9_A Srebp-1A, protein (ster 43.0 16 0.00053 27.0 2.6 35 234-268 41-75 (82)
209 2nrj_A HBL B protein; enteroto 42.8 1.3E+02 0.0046 27.2 9.3 29 229-257 158-190 (346)
210 2kho_A Heat shock protein 70; 42.7 56 0.0019 31.1 7.1 34 224-257 558-593 (605)
211 2b9c_A Striated-muscle alpha t 42.0 1.4E+02 0.0049 24.4 8.6 28 222-249 88-118 (147)
212 2c5k_T Syntaxin TLG1, T-snare 41.5 70 0.0024 24.5 6.2 24 217-245 64-87 (95)
213 1wt6_A Myotonin-protein kinase 41.2 1.2E+02 0.0042 23.4 7.5 30 230-262 49-78 (81)
214 1zme_C Proline utilization tra 41.0 32 0.0011 23.2 3.9 20 228-247 46-65 (70)
215 4egx_A Kinesin-like protein KI 40.7 78 0.0027 26.3 6.9 20 193-212 6-25 (184)
216 3auy_A DNA double-strand break 40.1 1.1E+02 0.0036 26.9 8.0 16 234-249 206-221 (371)
217 1fxk_C Protein (prefoldin); ar 40.1 79 0.0027 24.2 6.4 43 195-250 4-46 (133)
218 3viq_B Mating-type switching p 40.0 84 0.0029 24.3 6.4 31 188-218 4-34 (85)
219 1r8d_A Transcription activator 39.9 34 0.0012 25.5 4.2 52 200-256 54-105 (109)
220 2lq4_p Lysophosphatidic acid r 39.4 13 0.00045 28.3 1.8 17 200-216 14-30 (80)
221 2dgc_A Protein (GCN4); basic d 39.3 27 0.00093 25.0 3.4 14 249-262 43-56 (63)
222 3gp4_A Transcriptional regulat 39.2 41 0.0014 26.6 4.7 22 230-251 85-106 (142)
223 3ra3_B P2F; coiled coil domain 39.0 45 0.0016 21.2 3.9 23 189-211 4-26 (28)
224 1r8e_A Multidrug-efflux transp 39.0 48 0.0016 27.4 5.3 51 199-249 57-109 (278)
225 1ik9_A DNA repair protein XRCC 38.6 1.4E+02 0.0048 25.8 8.3 24 186-209 140-163 (213)
226 1zbt_A RF-1, peptide chain rel 38.3 49 0.0017 31.3 5.8 26 220-245 88-113 (371)
227 3trt_A Vimentin; cytoskeleton, 37.8 1.1E+02 0.0036 21.7 7.2 18 182-199 6-23 (77)
228 2aze_A Transcription factor DP 37.7 81 0.0028 26.8 6.5 22 236-257 29-50 (155)
229 1f5n_A Interferon-induced guan 37.7 2.1E+02 0.0071 28.0 10.3 13 185-197 487-499 (592)
230 3q0x_A Centriole protein; cent 37.3 74 0.0025 28.2 6.5 32 186-217 172-203 (228)
231 1m1j_C Fibrinogen gamma chain; 37.2 1.9E+02 0.0064 27.4 9.6 26 190-215 39-64 (409)
232 2ve7_A Kinetochore protein HEC 37.1 48 0.0017 29.7 5.4 20 226-245 192-211 (315)
233 4ati_A MITF, microphthalmia-as 37.0 12 0.00042 29.5 1.4 33 237-269 78-110 (118)
234 2ke4_A CDC42-interacting prote 36.8 31 0.001 26.8 3.6 18 239-256 65-82 (98)
235 3h3m_A Flagellar protein FLIT; 36.8 1.5E+02 0.005 23.8 7.7 71 181-251 18-100 (126)
236 2b5u_A Colicin E3; high resolu 36.7 2E+02 0.0067 28.9 9.9 51 201-251 316-371 (551)
237 2i1j_A Moesin; FERM, coiled-co 36.5 91 0.0031 30.2 7.5 21 225-245 334-354 (575)
238 2wvr_A Geminin; DNA replicatio 36.4 36 0.0012 30.3 4.4 32 228-259 107-138 (209)
239 1lwu_B Fibrinogen beta chain; 36.3 39 0.0013 31.0 4.7 20 229-248 38-57 (323)
240 1ez3_A Syntaxin-1A; three heli 35.9 1.3E+02 0.0046 22.3 9.9 27 188-214 8-34 (127)
241 2yo3_A General control protein 35.7 2.1E+02 0.0073 26.1 9.4 65 177-257 194-258 (268)
242 4dci_A Uncharacterized protein 35.6 1.9E+02 0.0066 24.1 8.9 23 227-249 85-107 (150)
243 3a7m_A Flagellar protein FLIT; 35.6 1.4E+02 0.0047 23.6 7.3 34 218-251 54-87 (122)
244 3ajw_A Flagellar FLIJ protein; 35.2 1.4E+02 0.0049 22.5 8.3 30 183-212 72-101 (150)
245 2l5g_B Putative uncharacterize 34.5 52 0.0018 22.8 4.0 26 189-214 6-31 (42)
246 3jsv_C NF-kappa-B essential mo 34.5 38 0.0013 26.8 3.8 59 187-246 18-81 (94)
247 2vz4_A Tipal, HTH-type transcr 34.4 39 0.0013 25.1 3.7 54 199-257 52-105 (108)
248 1joc_A EEA1, early endosomal a 34.4 99 0.0034 24.2 6.2 21 191-211 17-37 (125)
249 3rmi_A Chorismate mutase prote 34.3 1.6E+02 0.0055 22.8 8.4 22 190-211 10-31 (114)
250 3lnn_A Membrane fusion protein 34.2 2.1E+02 0.0071 24.4 8.7 31 187-217 93-123 (359)
251 3v86_A De novo design helix; c 34.1 45 0.0016 21.1 3.3 23 189-211 4-26 (27)
252 1m1j_B Fibrinogen beta chain; 34.1 1.8E+02 0.0063 28.1 9.2 18 190-207 98-115 (464)
253 4ani_A Protein GRPE; chaperone 34.0 1.4E+02 0.0046 26.1 7.6 26 187-212 68-93 (213)
254 3gpv_A Transcriptional regulat 33.4 44 0.0015 26.5 4.1 29 227-255 103-131 (148)
255 2rn7_A IS629 ORFA; helix, all 33.4 0.98 3.4E-05 33.1 -5.2 24 242-265 70-93 (108)
256 1nkp_A C-MYC, MYC proto-oncoge 32.9 48 0.0016 24.8 4.0 30 226-258 52-81 (88)
257 3gnl_A Uncharacterized protein 32.8 71 0.0024 27.7 5.6 50 194-243 186-236 (244)
258 3qks_A DNA double-strand break 32.8 44 0.0015 27.0 4.0 21 225-245 174-194 (203)
259 1m1j_B Fibrinogen beta chain; 32.7 2.5E+02 0.0084 27.2 9.8 15 245-259 177-191 (464)
260 3nkz_A Flagellar protein FLIT; 32.5 1.9E+02 0.0063 22.9 7.9 32 219-250 58-89 (123)
261 2wt7_B Transcription factor MA 32.5 26 0.00088 27.3 2.5 28 236-266 51-78 (90)
262 2wt7_B Transcription factor MA 32.5 93 0.0032 24.1 5.6 12 244-255 77-88 (90)
263 3vmx_A Voltage-gated hydrogen 32.4 1E+02 0.0035 21.8 5.3 22 231-252 23-44 (48)
264 3nvt_A 3-deoxy-D-arabino-heptu 31.9 33 0.0011 31.9 3.5 27 185-211 17-47 (385)
265 1ses_A Seryl-tRNA synthetase; 31.8 1.7E+02 0.0056 27.2 8.2 21 227-247 65-85 (421)
266 2oxj_A Hybrid alpha/beta pepti 31.8 42 0.0014 22.4 3.0 14 244-257 16-29 (34)
267 4dci_A Uncharacterized protein 31.7 2.2E+02 0.0077 23.7 8.6 30 227-256 78-107 (150)
268 3ljm_A Coil Ser L9C; de novo d 31.7 38 0.0013 22.0 2.8 18 229-246 4-21 (31)
269 2lw9_A Unconventionnal myosin- 31.4 1.2E+02 0.004 21.8 5.5 9 250-258 43-51 (51)
270 2pr5_A Blue-light photorecepto 31.4 32 0.0011 23.7 2.7 20 226-245 112-131 (132)
271 1w1w_A Structural maintenance 31.2 10 0.00035 34.0 0.0 23 179-201 174-196 (430)
272 2fup_A Hypothetical protein PA 30.9 1.8E+02 0.0061 22.2 9.5 22 243-264 96-117 (157)
273 4dyl_A Tyrosine-protein kinase 30.7 71 0.0024 29.0 5.5 71 187-258 311-381 (406)
274 1x4t_A Hypothetical protein LO 30.7 2E+02 0.0067 22.6 7.2 14 225-238 65-78 (92)
275 3sja_C Golgi to ER traffic pro 30.5 1.6E+02 0.0056 21.7 7.3 45 199-246 6-52 (65)
276 3onj_A T-snare VTI1; helix, HA 30.5 1.7E+02 0.0059 21.9 7.5 27 185-211 34-60 (97)
277 1a92_A Delta antigen; leucine 30.1 69 0.0023 22.9 4.1 27 234-263 15-41 (50)
278 2xdj_A Uncharacterized protein 30.0 1.8E+02 0.0061 21.9 7.7 26 192-217 20-45 (83)
279 3q4f_C DNA repair protein XRCC 29.9 17 0.00058 31.9 1.2 23 242-264 160-182 (186)
280 1zme_C Proline utilization tra 29.8 71 0.0024 21.4 4.1 23 194-216 46-68 (70)
281 1hwt_C Protein (heme activator 29.6 22 0.00077 24.7 1.6 19 227-245 59-77 (81)
282 3nmd_A CGMP dependent protein 29.6 51 0.0018 24.9 3.6 12 232-243 39-50 (72)
283 1gqe_A Release factor 2, RF2; 29.5 3E+02 0.01 25.9 9.5 9 247-255 105-113 (365)
284 3kqg_A Langerin, C-type lectin 29.3 62 0.0021 25.0 4.2 13 231-243 28-40 (182)
285 3kqg_A Langerin, C-type lectin 28.8 80 0.0027 24.3 4.8 9 234-242 24-32 (182)
286 2er8_A Regulatory protein Leu3 28.4 33 0.0011 23.5 2.2 13 231-243 54-66 (72)
287 3l4f_A RHO guanine nucleotide 28.4 23 0.0008 26.2 1.5 8 236-243 17-24 (61)
288 1zhc_A Hypothetical protein HP 28.4 22 0.00076 26.2 1.4 36 227-262 25-63 (76)
289 2wuj_A Septum site-determining 28.1 59 0.002 22.6 3.5 20 237-256 35-54 (57)
290 1s94_A S-syntaxin; three helix 27.8 1.6E+02 0.0054 23.6 6.5 29 187-215 38-66 (180)
291 3m48_A General control protein 27.8 54 0.0018 21.8 3.0 24 231-257 5-28 (33)
292 2xdj_A Uncharacterized protein 27.8 84 0.0029 23.8 4.6 13 201-213 22-34 (83)
293 2efl_A Formin-binding protein 27.4 2.6E+02 0.009 23.0 9.3 15 185-199 144-158 (305)
294 1hlo_A Protein (transcription 27.3 37 0.0013 24.6 2.5 15 245-259 66-80 (80)
295 1z0k_B FYVE-finger-containing 27.1 1E+02 0.0036 23.0 4.9 20 227-246 47-66 (69)
296 2p22_A Suppressor protein STP2 27.0 2.3E+02 0.0078 24.1 7.6 19 227-245 71-89 (174)
297 3s4r_A Vimentin; alpha-helix, 26.9 1.1E+02 0.0037 23.2 5.1 34 206-245 56-89 (93)
298 1cii_A Colicin IA; bacteriocin 26.8 3.4E+02 0.012 27.3 9.7 36 177-212 338-376 (602)
299 2wg5_A General control protein 26.7 60 0.0021 25.1 3.7 21 226-246 14-34 (109)
300 1ud0_A HSC70, 70 kDa heat-shoc 26.6 1.2E+02 0.0043 22.2 5.3 14 229-242 57-70 (113)
301 2f8x_M MAM-1, mastermind-like 26.6 1.8E+02 0.0061 21.6 6.0 46 192-237 7-54 (63)
302 1hlo_A Protein (transcription 26.3 56 0.0019 23.6 3.3 20 242-261 56-75 (80)
303 4gkw_A Spindle assembly abnorm 26.2 3E+02 0.01 23.4 9.3 49 188-236 63-118 (167)
304 2q12_A DIP13 alpha, DCC-intera 26.2 1.2E+02 0.004 25.5 5.7 10 184-193 171-180 (265)
305 4fi5_A Nucleoprotein; structur 26.1 2.7E+02 0.0091 22.7 8.2 59 194-252 24-88 (113)
306 1use_A VAsp, vasodilator-stimu 26.0 82 0.0028 22.1 3.9 11 197-207 20-30 (45)
307 1v9d_A Diaphanous protein homo 25.7 96 0.0033 27.5 5.3 14 183-196 301-314 (340)
308 3v2d_2 50S ribosomal protein L 25.6 71 0.0024 23.4 3.7 18 195-212 19-36 (72)
309 2pnv_A Small conductance calci 25.6 74 0.0025 21.8 3.5 20 228-247 18-37 (43)
310 3coq_A Regulatory protein GAL4 25.4 69 0.0023 22.4 3.5 19 227-245 46-64 (89)
311 3a2a_A Voltage-gated hydrogen 25.3 1.9E+02 0.0065 21.2 5.8 21 231-251 30-50 (58)
312 3ni0_A Bone marrow stromal ant 25.2 2.6E+02 0.009 22.3 9.0 25 228-252 52-76 (99)
313 3w03_C DNA repair protein XRCC 25.2 57 0.0019 28.2 3.6 34 182-215 142-175 (184)
314 2j1d_G DAAM1, disheveled-assoc 25.1 1.1E+02 0.0038 28.7 5.9 21 182-202 383-403 (483)
315 2dgc_A Protein (GCN4); basic d 25.1 1.9E+02 0.0064 20.5 6.2 11 248-258 49-59 (63)
316 3sjb_C Golgi to ER traffic pro 25.0 2.2E+02 0.0074 22.4 6.6 47 199-247 23-70 (93)
317 2j1d_G DAAM1, disheveled-assoc 25.0 3.9E+02 0.013 25.0 9.5 27 185-211 335-361 (483)
318 3gee_A MNME, tRNA modification 24.9 95 0.0032 29.0 5.3 61 196-256 168-231 (476)
319 1sf9_A YFHH hypothetical prote 24.8 27 0.00092 29.1 1.4 24 226-249 20-45 (128)
320 4b4t_J 26S protease regulatory 24.7 1E+02 0.0036 28.9 5.6 18 227-244 47-64 (405)
321 1fio_A SSO1 protein; four heli 24.7 2.6E+02 0.009 22.1 8.0 29 230-258 46-75 (196)
322 1m1j_A Fibrinogen alpha subuni 24.7 3.2E+02 0.011 27.0 9.0 14 244-257 140-153 (491)
323 3b8m_A Ferric enterobactin (en 24.6 2.6E+02 0.0088 24.6 7.8 24 225-248 176-199 (280)
324 3kin_B Kinesin heavy chain; mo 24.4 1E+02 0.0035 24.1 4.7 14 230-243 100-113 (117)
325 2y3a_B Phosphatidylinositol 3- 24.1 3.5E+02 0.012 24.4 8.7 29 221-249 120-148 (302)
326 1fmh_A General control protein 24.1 1.4E+02 0.0047 19.6 4.4 15 227-241 16-30 (33)
327 1r8d_A Transcription activator 24.1 1.5E+02 0.0051 21.9 5.3 24 226-249 82-105 (109)
328 2zqm_A Prefoldin beta subunit 24.0 2.2E+02 0.0074 20.9 7.0 25 232-256 26-50 (117)
329 3pzp_A DNA polymerase kappa; D 23.7 1.4E+02 0.0047 28.5 6.3 27 185-211 37-63 (517)
330 1j1d_B Troponin T, TNT; THIN f 23.5 2.5E+02 0.0085 22.1 6.8 22 226-247 63-84 (106)
331 3f1i_H Hepatocyte growth facto 23.5 1.5E+02 0.005 23.7 5.4 22 230-251 66-87 (98)
332 2qag_C Septin-7; cell cycle, c 23.5 17 0.00058 33.7 0.0 17 229-245 369-385 (418)
333 3ggo_A Prephenate dehydrogenas 23.5 2.1E+02 0.0072 24.8 7.0 34 185-218 260-294 (314)
334 1wmi_B RELB, hypothetical prot 23.4 33 0.0011 25.8 1.5 17 241-257 9-25 (67)
335 2efk_A CDC42-interacting prote 23.2 3.2E+02 0.011 22.6 8.4 71 182-258 106-180 (301)
336 2a3d_A Protein (de novo three- 23.2 1.3E+02 0.0044 22.5 4.7 54 202-258 5-66 (73)
337 3caz_A BAR protein; thermo-aci 22.9 1.6E+02 0.0054 26.7 6.1 26 191-216 97-122 (294)
338 1n7s_B Syntaxin 1A; neuronal s 22.8 1E+02 0.0034 21.7 3.9 35 232-266 11-45 (68)
339 1fxk_A Prefoldin; archaeal pro 22.8 2.2E+02 0.0075 20.6 6.3 19 230-248 26-44 (107)
340 2fzt_A Hypothetical protein TM 22.8 2.7E+02 0.0091 21.5 6.9 34 220-253 45-78 (79)
341 1pyi_A Protein (pyrimidine pat 22.7 65 0.0022 23.0 3.0 19 227-245 49-67 (96)
342 3d5a_X RF1, peptide chain rele 22.6 4E+02 0.014 24.9 9.0 20 228-247 71-90 (354)
343 3pbf_A Pulmonary surfactant-as 22.3 77 0.0026 23.5 3.5 22 194-215 4-25 (148)
344 1nlw_A MAD protein, MAX dimeri 22.3 70 0.0024 23.6 3.2 25 187-211 42-66 (80)
345 2oa5_A Hypothetical protein BQ 22.3 46 0.0016 27.0 2.3 19 238-256 10-28 (110)
346 2pms_C Pneumococcal surface pr 22.2 3.3E+02 0.011 22.3 8.7 46 195-240 64-110 (125)
347 1jth_B Syntaxin 1A; coiled-coi 21.9 1E+02 0.0035 22.1 3.9 34 232-265 9-42 (77)
348 1d7m_A Cortexillin I; coiled-c 21.9 3.1E+02 0.01 21.9 9.1 19 222-240 63-81 (101)
349 2l5g_A GPS2 protein, G protein 21.9 1.7E+02 0.0057 19.9 4.6 23 188-210 11-33 (38)
350 1q08_A Zn(II)-responsive regul 21.7 2.2E+02 0.0075 20.2 6.0 33 222-254 42-74 (99)
351 4e81_A Chaperone protein DNAK; 21.6 3.4E+02 0.011 22.9 7.7 19 225-243 171-189 (219)
352 2d8d_A Aroag, phospho-2-dehydr 21.5 2.3E+02 0.008 20.4 7.6 19 193-211 4-22 (90)
353 3aei_A Prefoldin beta subunit 21.3 56 0.0019 25.8 2.6 20 227-246 19-38 (99)
354 3err_A Fusion protein of micro 21.1 1E+02 0.0035 29.8 4.9 30 187-216 175-204 (536)
355 1lq7_A Alpha3W; three helix bu 21.1 2.5E+02 0.0087 20.7 6.0 33 184-216 5-42 (67)
356 2zhg_A Redox-sensitive transcr 20.9 1.1E+02 0.0036 24.5 4.2 29 229-257 93-121 (154)
357 2vz4_A Tipal, HTH-type transcr 20.9 1.2E+02 0.0042 22.4 4.3 24 226-249 81-104 (108)
358 3e98_A GAF domain of unknown f 20.8 1.1E+02 0.0038 26.5 4.6 36 227-262 73-108 (252)
359 1r73_A TM1492, 50S ribosomal p 20.7 92 0.0032 22.3 3.4 21 195-215 12-32 (66)
360 1t3j_A Mitofusin 1; coiled coi 20.7 3.1E+02 0.011 21.5 9.2 23 227-249 55-77 (96)
361 3n5l_A Binding protein compone 20.6 2.2E+02 0.0075 24.2 6.4 31 220-250 275-306 (310)
362 4akg_A Glutathione S-transfera 20.6 88 0.003 36.1 4.9 64 182-246 1854-1924(2695)
363 3he5_B Synzip2; heterodimeric 20.4 2.3E+02 0.008 20.0 6.9 15 229-243 27-41 (52)
364 3vlc_E Golgi to ER traffic pro 20.2 2E+02 0.0068 22.6 5.5 42 201-245 32-75 (94)
365 3k29_A Putative uncharacterize 20.2 4.2E+02 0.014 22.8 9.9 35 203-237 110-145 (169)
366 2wg5_A General control protein 20.0 1.2E+02 0.0042 23.3 4.3 24 189-212 11-34 (109)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.72 E-value=0.007 Score=52.62 Aligned_cols=43 Identities=40% Similarity=0.498 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
++.++|.+--++|||. +=||.||..-+.|+.++||||||-.-|
T Consensus 131 SleD~e~kln~aiEr~-alLE~El~EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 131 SLEDFEQRLNQAIERN-AFLESELDEKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCC----------
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888899875 458889999999999999999997654
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.76 E-value=0.032 Score=45.11 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 230 TMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
..-.||.|||.|+ .+|++|||+|+.||.+-
T Consensus 62 ~~~~~v~eLe~ev---erL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 62 RLDARVRELELEL---DRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 4467888888875 67899999999999754
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.40 E-value=0.029 Score=58.19 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcccccchhhhh
Q psy9550 225 KRERRTMERKLSEMEVELK-ELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 225 krERRaLERKiSEmEEELK-~L~~LRadNQRLKDENgALIRVI 266 (271)
.+|+.++|.++.+++++|. .+..|+.+|++|+.+-..|-..|
T Consensus 1004 ~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776 56677777777776665555433
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.31 E-value=0.091 Score=43.08 Aligned_cols=58 Identities=10% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~L 245 (271)
|.+++.+++.|..++++.+.|+.++|.+|.... +.++ ++|...|.+++.+|+++++.|
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~-~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS-AKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888887766321 2222 444555555555555555544
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.77 E-value=0.079 Score=48.79 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
+..-..++.+..+....++..+.++.+.
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555555555555544444433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.55 E-value=0.2 Score=43.50 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.-||.+|++.+++.+.|+.+|++-+..-.++.++||+
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~ 49 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA 49 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999888874
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.33 E-value=0.068 Score=37.90 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
||++++||+.||.++.++..++.+++.+|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677999999999999999999999988874
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.31 E-value=0.29 Score=44.29 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---c--c-hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhc
Q psy9550 197 LRETLSKTEEELNQVKATYSK---N--S-LSEQEKRERRTMERKLSEMEVELKE----LDQFKKENQRLK 256 (271)
Q Consensus 197 Lk~~L~e~~~El~qlk~~LEk---~--S-LlE~EkrERRaLERKiSEmEEELK~----L~~LRadNQRLK 256 (271)
|+++|.++++-+.+++.+.-. . . +..+|++--+ -+.||.|+|-|++. |++++++..|||
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555444321 1 2 3356555444 55799999999984 567788888776
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.80 E-value=0.33 Score=39.74 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
-+.-++...++.+.+..++.++..++..++.+++. ..+.++ ++|..+|++++.+||-+|+.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l-~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL-KSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777777777666663 234455 77788888888888888765
No 10
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.66 E-value=0.43 Score=37.95 Aligned_cols=60 Identities=18% Similarity=0.405 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------------------cchhHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSK------------------------------NSLSEQEKRERRTMERKL 235 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk------------------------------~SLlE~EkrERRaLERKi 235 (271)
=|+.++.+..+|..++...+.++..+...|.. +-|--.+++++..+|+|.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn 85 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN 85 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777776666544431 123334577888888888
Q ss_pred HHHHHHHHHH
Q psy9550 236 SEMEVELKEL 245 (271)
Q Consensus 236 SEmEEELK~L 245 (271)
..|+++|+..
T Consensus 86 ~~L~~qL~d~ 95 (97)
T 2eqb_B 86 KRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 8888877754
No 11
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=92.70 E-value=0.5 Score=38.71 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 185 kLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
.=|+++++|.+.|+. +..+..+.+.+++.. |--++--..-+.+++.+|+||.+||.+|+.+.-+
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~vi 75 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVI 75 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 346777788888876 555666666666543 2223322334788899999999999999865433
No 12
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=92.54 E-value=0.42 Score=38.94 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
|+++++|.+.+..+..+..+.+++++.. |.-++=-+.-+.|++.+|+||.+||++|+.+.-
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4555556666555666666666666654 222333345588999999999999999986543
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.47 E-value=0.39 Score=43.63 Aligned_cols=18 Identities=44% Similarity=0.577 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhhcccccc
Q psy9550 244 ELDQFKKENQRLKDENGA 261 (271)
Q Consensus 244 ~L~~LRadNQRLKDENgA 261 (271)
+.++|+.+|+||+.|..-
T Consensus 443 ~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 443 KETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhh
Confidence 445555566666655443
No 14
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=92.36 E-value=0.71 Score=45.33 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK------NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk------~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
+|++--.+.+++|..++.+...+++.-++.++..|. ..|... +.+....+.+++.-|++++...+..++-++=
T Consensus 31 ~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY-~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 31 AYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKY-QKDLADYPVKLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555566666777777777666666655442 233333 4456778888889999999999999999999
Q ss_pred cccccchhhhhhc
Q psy9550 256 KDENGALIRVISK 268 (271)
Q Consensus 256 KDENgALIRVISK 268 (271)
|.|.|-|-.++++
T Consensus 110 k~eDGyLs~~~aQ 122 (497)
T 3iox_A 110 KNEDGNLTEPSAQ 122 (497)
T ss_dssp TTSTTSBSSCCCB
T ss_pred cccCCCccchhcc
Confidence 9999988766553
No 15
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.92 E-value=1.4 Score=35.60 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELKELDQFKKENQ 253 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQ 253 (271)
+|.++|.+--.|+||.+ =||.||++=+.|+..-|
T Consensus 78 SLeD~E~k~n~aiErna-lLE~El~EKe~L~~~~Q 111 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNA-FLESELDEKESLLVSVQ 111 (111)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 67788888899999764 59999998888887644
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.79 E-value=0.2 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 230 TMERKLSEMEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRadNQRLKDENgALIR 264 (271)
.+..+|.+||.+| .++|+|-++.-.|--.|.-
T Consensus 81 ~~q~~i~~lE~eL---~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 81 QIQEMIGSVEEQL---AQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445666666654 4456666665555554443
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.70 E-value=0.29 Score=38.80 Aligned_cols=71 Identities=25% Similarity=0.450 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRE---RRTMERKLSEMEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrE---RRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIR 264 (271)
+.|.-.|++.++.++-|+..++.+-. ..++.++|.+- ...+..+|.+||.+| .++|+|-++.-.|--.|.-
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL---~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL---QKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444432211 12344554432 233445666666665 4456666666555555543
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.37 E-value=0.52 Score=37.54 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|..++.+.+.|+.+-+.+.+++..+..+|+
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.25 E-value=0.53 Score=37.49 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELK--------ELDQFK 249 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK--------~L~~LR 249 (271)
+.-|+.-|+++.....+-...|+.++.|+.+++..+..- -+..+ +.-+.+||+.|.|+|.... .|.+|.
T Consensus 12 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l-~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 12 EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQ-LSMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667666666655555555555555555444321 11122 4456677777777665432 345566
Q ss_pred Hhhhhhccccc
Q psy9550 250 KENQRLKDENG 260 (271)
Q Consensus 250 adNQRLKDENg 260 (271)
++.+++|++=.
T Consensus 91 ~eL~~~r~em~ 101 (131)
T 3tnu_A 91 EQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666533
No 20
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=91.21 E-value=1.3 Score=36.49 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE-TLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 185 kLYE~~k~ENErLk~-~L~e~~~El~qlk~~--LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.-|+++++|.+.|+. +-.+..+.+++++.. |.-++=-..-+.+.+.+|++|.+||.+|+.+.
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 457777888888865 566666777777654 32222122238889999999999999987543
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.53 E-value=1.1 Score=41.35 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+..+|+.+++..++.+++.+.+++
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555554443
No 22
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.36 E-value=2.3 Score=34.63 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
||.+=||-..|.|+=+.+|..|..+|++||
T Consensus 81 ERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 81 ERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 444445444444444446667778888875
No 23
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.31 E-value=0.79 Score=36.88 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELS---------RLRETLSKTEEELNQVKATYS-KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 183 YKkLYE~~k~ENE---------rLk~~L~e~~~El~qlk~~LE-k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
-|+|..-++-.|| -||..|.+.++.+++++.+++ +..-.+..++.-..|..++.+|.++|++=++|
T Consensus 12 rKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 12 KKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665 489999999999999987765 54455666666667777777777777654443
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.21 E-value=1.2 Score=36.11 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELN 209 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ 209 (271)
.+-+.++.|+++|+.+|+.+..|-.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888877755543
No 25
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=89.94 E-value=1.4 Score=43.72 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=55.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKEL-------DQ 247 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L-------~~ 247 (271)
.++.-+-||.|..+.+|-++|+..|.+++-+++.+...+. ++-++-. ..|....++.+..|++|-..+ .+
T Consensus 334 ~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~-t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 334 TEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSAR-TNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3455688999999999999999999999999988876655 1122222 444445555555444333222 11
Q ss_pred HHHhhhhhcccccchhhhhh
Q psy9550 248 FKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 248 LRadNQRLKDENgALIRVIS 267 (271)
=-++-++-+||+.||.=+|.
T Consensus 413 KiAE~KrK~dE~~aIKDAVk 432 (602)
T 1cii_A 413 KIAEEKRKQDELKATKDAIN 432 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 13444555667766654443
No 26
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=89.83 E-value=0.63 Score=35.89 Aligned_cols=81 Identities=16% Similarity=0.320 Sum_probs=53.7
Q ss_pred CCCcchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLR--------ETLSKTEEELNQVKATYSKNSL--SEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk--------~~L~e~~~El~qlk~~LEk~SL--lE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.=+-||+.|+.++.....++. ..|.+++..|.++..-|++..+ -.+-...|..|-.||-+...+| +.
T Consensus 9 ~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL---~~ 85 (102)
T 1vcs_A 9 GYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM---GK 85 (102)
T ss_dssp CSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHH---HH
Confidence 345789999999888877765 3566666666666654443110 0111235778888888877666 55
Q ss_pred HHHhhhhhcccccc
Q psy9550 248 FKKENQRLKDENGA 261 (271)
Q Consensus 248 LRadNQRLKDENgA 261 (271)
|+.|-+++++.++|
T Consensus 86 lk~elk~~~~~~~~ 99 (102)
T 1vcs_A 86 LETDFKRSRIASGP 99 (102)
T ss_dssp HHHHTHHHHTCCSS
T ss_pred HHHHHHHHHhhccc
Confidence 78888889888776
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.32 E-value=4 Score=30.07 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcccccc
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLKDENGA 261 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLKDENgA 261 (271)
|+-...++.|.+....+++.++.++.+.....++ + ..|-.+|.+||.-+|++|. ....|..-+.+|.++.-+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~-----~-E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ-----L-EDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555544444333222 2 3478899999999999997 556677777777655443
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.31 E-value=2.1 Score=36.83 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccch
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELK----ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK----~L~~LRadNQRLKDENgAL 262 (271)
+.++-|++.|...+..|.|||.-+. .|..+|.--+++..||..|
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L 123 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776665555444332 2223344444444444444
No 29
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=89.29 E-value=0.14 Score=44.81 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
|.+.|.+++.+|+.++..+.+|++||+||++
T Consensus 27 eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 27 ENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666666666666654
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.68 E-value=3.2 Score=34.32 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hc--chh-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS---KN--SLS-EQEKRERRTMERKLSEMEVELKE----LDQFKKENQRLK 256 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE---k~--SLl-E~EkrERRaLERKiSEmEEELK~----L~~LRadNQRLK 256 (271)
=++-.--+.-|+.+|..+++-|.+...+-- +. .|. .+ +.|+-.-..++.|||.|+|. |++.-++.+||+
T Consensus 20 q~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL-~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL-DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455677788777777766654432 11 122 23 33444447789999999985 456678889999
Q ss_pred ccccch
Q psy9550 257 DENGAL 262 (271)
Q Consensus 257 DENgAL 262 (271)
.+|-.|
T Consensus 99 ~~~~~~ 104 (121)
T 3mq7_A 99 RENQVL 104 (121)
T ss_dssp HHHHHH
T ss_pred hhchhh
Confidence 888766
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.67 E-value=1.6 Score=33.74 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=10.0
Q ss_pred HHHhhhhhcccccc
Q psy9550 248 FKKENQRLKDENGA 261 (271)
Q Consensus 248 LRadNQRLKDENgA 261 (271)
|..+|++||+|-.+
T Consensus 53 L~~en~qLk~E~~~ 66 (81)
T 2jee_A 53 LERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777654
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.52 E-value=3.6 Score=32.65 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.++.++||.+|+.++.+++....++.+- .-+.-|+.-|...|.....+|.||..|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988888763 3445668888999999999999988775
No 33
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.61 E-value=4.5 Score=31.49 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
+...+.+.+.+..+|++++.++..++
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.54 E-value=4.1 Score=34.42 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
|---+++++.++|+|...|+++|+.-..+= ..|.++=.+|-+||-+|
T Consensus 102 MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l---~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 102 MVADARKEKYAIEILNKRLTEQLREKDTLL---DTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 334569999999999999999998543322 22333334444555544
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.51 E-value=5.7 Score=31.36 Aligned_cols=33 Identities=6% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
++.-+....||.+|.-+++.++..+.+.|...|
T Consensus 26 R~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 26 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444445555555555555555555554443
No 36
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.44 E-value=0.4 Score=39.96 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
|--.+++++.++|+|...|+++|+.-.
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999988543
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.25 E-value=1.5 Score=35.53 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=37.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-----------ELDQF 248 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-----------~L~~L 248 (271)
.+||--.||.+..|.-.-+. +.|| -+|=-.||++++.||+|-. .+..|
T Consensus 12 ~KdFSe~YE~~h~ErL~~mS-----KqEL----------------IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eL 70 (104)
T 3s9g_A 12 QRDFSETYERYHTESLQNMS-----KQEL----------------IKEYLELEKSLSRMEDENNRLRLESKRLDARVREL 70 (104)
T ss_dssp --CCHHHHHHHHHHHHHTSC-----HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-----HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 57899999988776422111 1111 2233344555555555443 45567
Q ss_pred HHhhhhhcccccchhh
Q psy9550 249 KKENQRLKDENGALIR 264 (271)
Q Consensus 249 RadNQRLKDENgALIR 264 (271)
.++..||+.||-.|.+
T Consensus 71 e~everL~~ENq~L~~ 86 (104)
T 3s9g_A 71 ELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888899999988865
No 38
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.08 E-value=5.3 Score=30.75 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhc------c--
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLK------D-- 257 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLK------D-- 257 (271)
-..++.|.+....+.+.++.++.++....++ . ..|-.+|.+||.-+|++|. .-.+|..-+++|. .
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~-----~-E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQ-----L-EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444433322 1 3367788888888888876 3334443333332 3
Q ss_pred --cccchhhhhh
Q psy9550 258 --ENGALIRVIS 267 (271)
Q Consensus 258 --ENgALIRVIS 267 (271)
|+.||-|=|-
T Consensus 85 E~ev~~L~Rriq 96 (101)
T 3u1c_A 85 ESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7777777653
No 39
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.00 E-value=3.9 Score=32.45 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hcchhHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS--KNSLSEQEKR------ERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE--k~SLlE~Ekr------ERRaLERKiSEmEEELK~L~ 246 (271)
....|..+...+..+.+++..+|+ +..+.+.|.+ .+..||.+|.+|++.|....
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554 3333333332 34566677777666655433
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.78 E-value=4.4 Score=28.97 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LR 249 (271)
..+...|+.+|+.|+.|+..|.+|=
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776653
No 41
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=86.17 E-value=1.1 Score=30.44 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
||+ +.+||++|...|+..+.|++.+|.+
T Consensus 2 L~~-~L~ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 2 LYE-ALKENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 5789999999999999999988643
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.10 E-value=4.2 Score=34.52 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=6.4
Q ss_pred hhhhhcccccchh
Q psy9550 251 ENQRLKDENGALI 263 (271)
Q Consensus 251 dNQRLKDENgALI 263 (271)
..++|++||.-||
T Consensus 118 kl~kLq~EN~~LV 130 (152)
T 3a7p_A 118 KLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555444
No 43
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.08 E-value=2.1 Score=31.94 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSL--------SEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SL--------lE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+++.|.+.|-.+|..++.+++.+..+|-.+.+ .++ -.+..+++..+.++++.--.|..|+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l-~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKV-LADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45788888999999999999998888865432 222 3344555555555555555555543
No 44
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=85.43 E-value=0.24 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~ql 211 (271)
...+||++|++++.+++.++.++
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888877766655444
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.27 E-value=7.7 Score=29.25 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
+++..+|..|..+|+.++.++.+.+.+-++ -+..+.+=+.-|---|-+|.+||.-..+|=+.|
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~---------~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~~~ 72 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDA---------FRSNLKTLLEILDGKIFELTELRDNLAKLLECS 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 456677888888888888888887544332 223334444445555667778887777765543
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.70 E-value=2.4 Score=42.25 Aligned_cols=76 Identities=5% Similarity=0.144 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHH--HH-HHHHHHHHHHHHHHHH-----------H
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNS--LSEQEK--RE-RRTMERKLSEMEVELK-----------E 244 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~S--LlE~Ek--rE-RRaLERKiSEmEEELK-----------~ 244 (271)
.|.++.-++++.+.+.|+.--.++..-..++...|++.. ..+.+. .| -..|||+|..|++++. .
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444444444443210 001111 11 1246666666666543 3
Q ss_pred HHHHHHhhhhhc
Q psy9550 245 LDQFKKENQRLK 256 (271)
Q Consensus 245 L~~LRadNQRLK 256 (271)
|.+++.+.|||.
T Consensus 140 Ledq~~kIQRLE 151 (562)
T 3ghg_A 140 VRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455667777774
No 47
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.60 E-value=3.7 Score=31.56 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
+..++++.||++|..+|...+.+++.+|.
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778999999988888888887743
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.42 E-value=0.43 Score=49.63 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVE 241 (271)
Q Consensus 229 RaLERKiSEmEEE 241 (271)
.+++.++.+||+|
T Consensus 980 ~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 980 KNATNRVLSLQEE 992 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.30 E-value=8 Score=29.56 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
+++..+|..|+.+|+.++.++.+.+.+-++ -+..+.+=+.-|---|-+|.+||.-..+|=+.|
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~---------~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~~ 78 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERER---------ARAEVGRAAQLLDVSLFELSELREGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccC
Confidence 455667888888888888888777544332 223344444445555667788888777776555
No 50
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.89 E-value=1.1 Score=41.61 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
+++.|.+.|++++.+.++++.+++.+++.. ..+..|..+||.|..+|.||...++|...+|=-
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~ 70 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPA 70 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 445556666666666666666665554421 233345668888888888888777777666643
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.61 E-value=3.3 Score=32.96 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
-+.++-.+.+..||++|+++++.++.+|-..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999774
No 52
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=83.55 E-value=0.8 Score=44.40 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSK----NSLS----EQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk----~SLl----E~EkrERRaLERKiSEmEEELK~L~ 246 (271)
|++.|++..+.+.|..+|...+.+...++..|++ +-++ .....|+..||++..|+|++...|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 327 IAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777888888777777766542 1111 1123344455555555555554443
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.53 E-value=11 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L 245 (271)
+.++|.+-.+-..+| .+||..|+.|
T Consensus 58 l~eaEe~~~~L~~~K-~eLE~~l~el 82 (89)
T 3bas_A 58 MKQLEDKVEELLSKN-YHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445554433333333 3666666655
No 54
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.45 E-value=6.8 Score=30.89 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELK--------ELDQF 248 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK--------~L~~L 248 (271)
-+.-|+.-|+++.....+--..|+.++.|+.+++..+..- -+..+ +.-+.+||+.|.|+|.... .|.+|
T Consensus 9 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l-~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~l 87 (129)
T 3tnu_B 9 AESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNV-KKQCANLQNAIADAEQRGELALKDARNKLAEL 87 (129)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788877777776667777777777776655531 12223 5567888888888776432 35567
Q ss_pred HHhhhhhcccccc
Q psy9550 249 KKENQRLKDENGA 261 (271)
Q Consensus 249 RadNQRLKDENgA 261 (271)
.++.+++|+|=..
T Consensus 88 E~eL~~~r~e~~~ 100 (129)
T 3tnu_B 88 EEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 7777777766443
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.41 E-value=11 Score=28.47 Aligned_cols=63 Identities=13% Similarity=0.298 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK----------------NSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk----------------~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
+.++--+.+..+|.+|.-+++.++..+.+.|...|- ..+.++ ---|-.||.||.-|.+||--|
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a-~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA-SLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345556677778888888888888777777766551 112222 234555666666666665443
No 56
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.36 E-value=8 Score=33.19 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhccc
Q psy9550 226 RERRTMERKLSEMEVELKELD-----QFKKENQRLKDE 258 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~-----~LRadNQRLKDE 258 (271)
-|++.|..||+.||.|--.++ +||+--||+..|
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 367777777777777655444 466666665544
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.33 E-value=7.2 Score=33.53 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELK 243 (271)
Q Consensus 227 ERRaLERKiSEmEEELK 243 (271)
|-..+++++..+|+++.
T Consensus 98 Eie~~~~~i~~lE~eil 114 (256)
T 3na7_A 98 EEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.21 E-value=3.8 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~ 246 (271)
++|+-.|..+.-++.+|+++|..|.
T Consensus 79 ~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 79 QAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3444444445555555555555443
No 59
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.12 E-value=11 Score=28.75 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhc------
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQRLK------ 256 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQRLK------ 256 (271)
|+--..++.|.+....+.+.++.++.++....++ . ..|-.+|.+||.-+|.++. .-..|..-+++|.
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~-----~-E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQ-----L-EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666666666666666665555443332 1 2366778888888888775 3334443333332
Q ss_pred ----ccccchhhhh
Q psy9550 257 ----DENGALIRVI 266 (271)
Q Consensus 257 ----DENgALIRVI 266 (271)
.|.+||-|=|
T Consensus 82 ~~AE~evasLnRri 95 (101)
T 3u59_A 82 TDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2667776655
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=83.02 E-value=3 Score=32.19 Aligned_cols=61 Identities=30% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcchh-HHH--HHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS-----KNSLS-EQE--KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE-----k~SLl-E~E--krERRaLERKiSEmEEELK~L 245 (271)
+=+|.+..||.+|...-..++---.++=++++ +..|- |++ ..-+..|+.|+.|||+|||-+
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677788888776433332222222222222 11111 111 334667899999999999853
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.69 E-value=5.3 Score=41.39 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVEL 242 (271)
Q Consensus 229 RaLERKiSEmEEEL 242 (271)
..|+.++.++++++
T Consensus 923 ~~Le~~l~ele~el 936 (1184)
T 1i84_S 923 QELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 62
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=82.22 E-value=5.8 Score=31.42 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 226 RERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
.||.+=||-..|-|+=..+|..|+.+|++|++|
T Consensus 58 aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 58 AERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 356665666666565566788888999999986
No 63
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=81.97 E-value=2.6 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+..+++..||++|..+|...+.|++.+|..++
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888877765544
No 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.62 E-value=5.1 Score=46.65 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q psy9550 182 DYKKLYEESQAELSRLR-------ETLSKTEEELNQVKATYS 216 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk-------~~L~e~~~El~qlk~~LE 216 (271)
-|++||.+-+.|.+..+ .+|.++..++++++.+|+
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~ 1944 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLA 1944 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888988888877666 455666666666665553
No 65
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.20 E-value=8.6 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~LRa 250 (271)
..|...|..+|.+|+.|+..|..|=.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888877766543
No 66
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=81.14 E-value=1.8 Score=34.18 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
.+..+.++.|+++..+++.|+.+++.++.|+.+.|
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467889999999999999999999998887754
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.58 E-value=2.4 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
-.+++..||+.|+.+++.++.|+..++..|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777776554
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=80.26 E-value=11 Score=32.31 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+.||+.-.++++.+.+.++.+|+.++.++..++.++++
T Consensus 64 ~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 101 (341)
T 3fpp_A 64 PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777888888888888877777777666553
No 69
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=80.19 E-value=3.1 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+..+++..||++|..++...+.|++.+|.+.+
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899998888888888777765544
No 70
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.03 E-value=6.5 Score=28.56 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELKELD 246 (271)
Q Consensus 231 LERKiSEmEEELK~L~ 246 (271)
||...+.|.|=+|.|+
T Consensus 36 LE~ets~mKevlk~lq 51 (54)
T 1deb_A 36 LETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHc
Confidence 3666777877787775
No 71
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.51 E-value=11 Score=29.59 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ch------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh
Q psy9550 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKN--SL------SEQEKRERRTMERKLSEMEVELKE----LDQFKKE 251 (271)
Q Consensus 184 KkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SL------lE~EkrERRaLERKiSEmEEELK~----L~~LRad 251 (271)
+.+||. +.+.||.+|+++..+-+.+..++++. .+ -|-|-..|..+|..|.-|-..+-. -.+|.+.
T Consensus 15 ~~~ye~---~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 15 GDLYEE---EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp THHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 346765 56678888888888877777666642 11 133444556666665555443332 2345566
Q ss_pred hhhhcccccch
Q psy9550 252 NQRLKDENGAL 262 (271)
Q Consensus 252 NQRLKDENgAL 262 (271)
.+-|++|=..|
T Consensus 92 iesL~eEl~FL 102 (119)
T 3ol1_A 92 VESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777764433
No 72
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=79.37 E-value=4.3 Score=30.07 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=26.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 216 SKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 216 Ek~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
.|++++..--..-+.|+..+.+|++|+..|..--.+++-|||
T Consensus 40 ~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~~~ 81 (82)
T 1am9_A 40 NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLKD 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 355555554556667777777777777666666566665654
No 73
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=79.27 E-value=4.4 Score=34.37 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~ 244 (271)
-.-+++|+++.+.+...|+.++.....||.++ +.....+ ...-++|.++|+++..+|.+
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL---~~a~~~D---eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNAL---LTASSPD---TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSSSCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999988888888777665 2222222 22445667777777766654
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.10 E-value=13 Score=31.51 Aligned_cols=54 Identities=28% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYS-KNSLSEQE-------KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LE-k~SLlE~E-------krERRaLERKiSEmEEELK~L 245 (271)
...+.|+.++..++.++.+++..|+ |..+.+.= ..+--.+|.|+..+|+|-+.|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433 22222211 233444555555555555433
No 75
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.70 E-value=9.8 Score=32.78 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=27.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
..||+.-+++++.+.+.++.+|+.++.++..++.+++
T Consensus 65 ~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~ 101 (369)
T 4dk0_A 65 STTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQ 101 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888888888888888887777777665555
No 76
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.57 E-value=1.7 Score=40.65 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
+..|.+.|++++++.++++.+++.+++. ..|.+ |..+||.|...|.||...++|...+|=
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~rr~l~n~~~~l~gnIrV~vRvRP 69 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-SNMERKELHNTVMDLRDNIRVFCRIRP 69 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4455555555555555555555554442 12222 567888999988888887777766664
No 77
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.56 E-value=7.7 Score=37.51 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+-+.+++.+.+.|+.+..++.+++.+++..-+. ..++ ..|-+.|..+|.++|++++++++
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~--~~~l-~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED--AKDL-IAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777766543322 1222 45677888888888888886654
No 78
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=78.18 E-value=1.1 Score=32.20 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhcccccchhhh
Q psy9550 241 ELKELDQFKKENQRLKDENGALIRV 265 (271)
Q Consensus 241 ELK~L~~LRadNQRLKDENgALIRV 265 (271)
+.+++.+|+.+|.+|+.||..|--+
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999887443
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.05 E-value=1.6 Score=32.49 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
..||.++.+||.+.. +|..||+.|++++..|
T Consensus 32 ~~LE~~v~~le~~~~---~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 32 KALETQVVTLKELHS---STTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345555555555433 2445555555554444
No 80
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.74 E-value=13 Score=32.03 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~ql 211 (271)
..|.+-++.++..++.++.++
T Consensus 96 ~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 81
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.12 E-value=17 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh----hhhhcccccchh
Q psy9550 235 LSEMEVELKELDQFKKE----NQRLKDENGALI 263 (271)
Q Consensus 235 iSEmEEELK~L~~LRad----NQRLKDENgALI 263 (271)
-.+.+++|.+|..=|.. .-||+.||.-|.
T Consensus 72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 33455555555544433 377888887763
No 82
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.90 E-value=9.8 Score=39.42 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
+...++.++.+++++++.|
T Consensus 914 ~l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555543
No 83
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.26 E-value=8.3 Score=36.44 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
+.+.+++.+.+.|+.+..++.+++.+++..-+. ..++ +.|-+.|..+|.+||++++.+++-
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~--~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDEL-LAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666665432221 1222 556777888888888888876543
No 84
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=76.07 E-value=18 Score=31.33 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+.+.+++|..|..+.+.++.+.++++.+||+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888888877777773
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.07 E-value=5.8 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+.+.--..+...|++|...|+++..||..++.+|++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677788899999999999999999888875
No 86
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=75.91 E-value=11 Score=33.60 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCCCCcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 175 PNENGELDYK--------KLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 175 ~~e~~~~DYK--------kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
..+...-.|- +..++++.||++|..+|...+.|++.+|.+++.
T Consensus 90 ~~e~Pse~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 90 IKENPSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp -CCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556663 445567899999999999999999999877663
No 87
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=75.66 E-value=18 Score=30.85 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
+.++++-..++|+.+----|+|+..+|++
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lrae 68 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLRAE 68 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444445555555544
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.64 E-value=3.3 Score=31.31 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~L 248 (271)
..|...|..+|..|+.|+..|..|
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888877644
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.20 E-value=21 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
|....++...|..+++..+.++.++...
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~ 42 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKA 42 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666665543
No 90
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=75.03 E-value=21 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELN 209 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~ 209 (271)
..+.||+.|+.+++++..++.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~ 46 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAG 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766654433
No 91
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=74.65 E-value=3.5 Score=30.98 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk 212 (271)
|.+.|+.++...+..++++.
T Consensus 4 eie~L~~q~~~Le~~l~e~E 23 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLE 23 (86)
T ss_dssp --------CTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 92
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.60 E-value=10 Score=32.01 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 224 EKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 224 EkrERRaLERKiSEmEEELK~L 245 (271)
|+.-|...|.....+|.||..|
T Consensus 70 E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 70 ENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665554
No 93
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.58 E-value=23 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.615 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
+++.|+..|++|++.|..+
T Consensus 105 ~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 105 KKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443
No 94
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.58 E-value=5.3 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
..|...|..+|..|++|+..|..
T Consensus 35 ~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566667777777777666654
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.19 E-value=2.2 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhh
Q psy9550 232 ERKLSEMEVELKELDQFKKENQRLKDENGALIRVIS 267 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRadNQRLKDENgALIRVIS 267 (271)
+..|.+||.++.. |...|+.|..||..|-.-|.
T Consensus 28 ~~~i~~LE~~v~~---le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVT---LKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 22334445555555544443
No 96
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=74.06 E-value=18 Score=27.72 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLR---------ETLSKTEEELNQVKATYSKNS--LSEQEKRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk---------~~L~e~~~El~qlk~~LEk~S--LlE~EkrERRaLERKiSEmEEELK~ 244 (271)
-||+.|..++.....++. ..|.+++..|.++..-|++.. +..+-...|..|-.||-+...+|+.
T Consensus 22 ~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~ 96 (102)
T 2qyw_A 22 EIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAK 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 577778877777777663 344555555555544333210 0011133566777776666655544
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.90 E-value=20 Score=32.46 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
.++.+...|.++.++..+.++.++.++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 344444444444444444444444444
No 98
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=73.87 E-value=5.3 Score=36.19 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENg 260 (271)
.+.|+.++++++++++++...|+.+. +.....+|+.|+++++..+++...+-+.|.++.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIEKRP-------ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHG 308 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666666665322 1222356666666666666666666555543333
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.27 E-value=8.9 Score=29.50 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEV 240 (271)
Q Consensus 227 ERRaLERKiSEmEE 240 (271)
|-.+|.|||.-|||
T Consensus 87 ev~~L~RriqllEE 100 (101)
T 3u1c_A 87 EVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc
Confidence 45566666666655
No 100
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.08 E-value=14 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhh
Q psy9550 231 MERKLSEMEVELKELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 231 LERKiSEmEEELK~L~~LRadNQRLKDENgALIRVI 266 (271)
++.++.+||.|.. .|+++.+.|+.|...|--+|
T Consensus 41 ~~~r~~~L~~eN~---~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 41 TQHKVLELTAENE---RLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555443 23444444555544443333
No 101
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=72.52 E-value=3.3 Score=34.27 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEME 239 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmE 239 (271)
|.+++|..+|-.+|+.++..++.+..+=+..-+.++ ..|..+|+.+|+.+-
T Consensus 6 e~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf-~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAEL-EKEKATLEAEIARLR 56 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 567888888888888888888877554444445555 567777877777654
No 102
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=72.33 E-value=15 Score=27.24 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy9550 231 MERKLSEMEVE 241 (271)
Q Consensus 231 LERKiSEmEEE 241 (271)
+..+|+++|.+
T Consensus 31 ~q~~i~~lE~e 41 (84)
T 1gk4_A 31 YQDTIGRLQDE 41 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.27 E-value=28 Score=25.97 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
.++...+...|+..+.+.+.++.+++..
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555443
No 104
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.00 E-value=33 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEE 207 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~E 207 (271)
|-+...+.+..|++.+|.+++..+.+
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777666554
No 105
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.64 E-value=18 Score=34.83 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSK------NSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk------~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+++.+.+.|+.+..++.+++.+++..-+. ....++ +.|-+.|..+|.+||++++++++
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSL-RARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554432110 001111 44556666666667666665543
No 106
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=70.81 E-value=25 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+....+.+.++.+|.++..+..+++.+++
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~ 34 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIG 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666555555555444
No 107
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=70.45 E-value=22 Score=27.61 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhccc
Q psy9550 225 KRERRTMERKLSEMEVELKELDQF----KKENQRLKDE 258 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~L----RadNQRLKDE 258 (271)
..||-..|+|+----+||-.|+++ -++..||++|
T Consensus 39 EnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 39 ENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 446777777776666666555443 2566666654
No 108
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.43 E-value=20 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhhhhc
Q psy9550 228 RRTMERKLSEMEVELKE----LDQFKKENQRLK 256 (271)
Q Consensus 228 RRaLERKiSEmEEELK~----L~~LRadNQRLK 256 (271)
+++....|++|-...+. |..|..||+-|-
T Consensus 72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 45556666666555553 488888887664
No 109
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.04 E-value=7 Score=27.90 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
+++..+|..|+.++..++.|+..++..
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666543
No 110
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.78 E-value=14 Score=28.18 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEV 240 (271)
Q Consensus 227 ERRaLERKiSEmEE 240 (271)
|-.+|-|||--+||
T Consensus 87 evasLnRriqllEE 100 (101)
T 3u59_A 87 EVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 45566666665554
No 111
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.01 E-value=37 Score=26.03 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSK-----NSLSEQE---KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk-----~SLlE~E---krERRaLERKiSEmEEELK~L 245 (271)
.+++.|-.+|..+|.+++.+-+.+..+|+. ..|..-| -+|..++.+.+.++++|+.-|
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666665555554431 1111111 256777788888888887744
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.82 E-value=19 Score=27.28 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELK 243 (271)
Q Consensus 230 aLERKiSEmEEELK 243 (271)
.||.+|.|.|++++
T Consensus 44 eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 44 ELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666665555
No 113
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=68.70 E-value=28 Score=26.74 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc------chhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSKN------SLSEQ-------EKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~-------EkrERRaLERKiSEmEEELK~L~ 246 (271)
..++|+.+|...+.+|..++..|+.+ ...|+ -.-+--+|+.||.|++..|-.+.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666555555421 11111 12244567777777776655443
No 114
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.22 E-value=8.8 Score=27.19 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~L 248 (271)
..+...|...|..|++|+..|..+
T Consensus 36 ~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 36 EDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777777666543
No 115
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.10 E-value=34 Score=30.02 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|-..+..||..|..+|+..+.|+..++.+|+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999887765
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.16 E-value=36 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
|....++...|..+++..+.++.++..
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665555553
No 117
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=66.11 E-value=13 Score=27.96 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--------hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhcccccc
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNS--------LSEQEKRERRTMERKLSEMEVELKEL----DQFKKENQRLKDENGA 261 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~S--------LlE~EkrERRaLERKiSEmEEELK~L----~~LRadNQRLKDENgA 261 (271)
.+.||.+|..+..+-+.+..+++... --|-|-.-|..+|.-+.-|-..+-.+ .+|.+..+-|++|=..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887776666421 12444444556666555555444433 4555556667776433
No 118
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=65.96 E-value=41 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc------chhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKN------SLSEQ-------EKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~-------EkrERRaLERKiSEmEEELK~L~ 246 (271)
....++|+.+|...+.||..++..|+.+ ...|+ -.-+--+||.||+|++..|-.+.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555421 11111 12244567777777766655443
No 119
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=65.67 E-value=50 Score=28.51 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEE----ELNQVKATYSK 217 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~----El~qlk~~LEk 217 (271)
-+++.|.++.+..++..++++... .+++++..|++
T Consensus 28 k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~ 66 (169)
T 3k29_A 28 KRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDD 66 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346667777666666666655433 36777777764
No 120
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=65.43 E-value=14 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH
Q psy9550 201 LSKTEEELNQVKATYSK---NSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 201 L~e~~~El~qlk~~LEk---~SLlE~EkrERRaLERKiSE 237 (271)
+++++..|.+++.-|+. +.+-++=..|.+.+|++|+.
T Consensus 6 ~eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~ 45 (50)
T 2a26_A 6 SEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKN 45 (50)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666653 22222223355555555553
No 121
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=65.35 E-value=22 Score=33.46 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
.|.++-+.|-..|+.++.++|++|+.|
T Consensus 69 e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 69 ELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555677788888888888888765
No 122
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.26 E-value=21 Score=41.79 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKE 244 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~ 244 (271)
.|+.+|+.++..++..|..
T Consensus 2056 ~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2056 RETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555543
No 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.93 E-value=35 Score=26.16 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+++.|..+|+++..+=+.+..+|+. + .+|+.++..-|..+|.|+..|+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~-----l-Eke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELED-----V-EKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHhHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777766666555443 3 44777777778777777776654
No 124
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=64.91 E-value=13 Score=37.72 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 178 NGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 178 ~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
.+.+|.++ |..||..++++++.++..++..|.
T Consensus 793 ~~~~d~~~-------~~~rl~k~~~~~~~~~~~~~~~l~ 824 (862)
T 1gax_A 793 EGLLDVEE-------WRRRQEKRLKELLALAERSQRKLA 824 (862)
T ss_dssp CSCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566654 456677777777777777776665
No 125
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=64.88 E-value=25 Score=33.92 Aligned_cols=66 Identities=8% Similarity=0.150 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h-------------hhcchhHHH---HHH-HHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVKAT---------Y-------------SKNSLSEQE---KRE-RRTMERKLS 236 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk~~---------L-------------Ek~SLlE~E---krE-RRaLERKiS 236 (271)
.-+-+.+++.+.+.|+.+...+.+++.+++.. + ......+++ ..| .+.|..+|.
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~ 121 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVA 121 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHH
Confidence 34455677778888888888888888777651 0 111111110 334 667777888
Q ss_pred HHHHHHHHHHHH
Q psy9550 237 EMEVELKELDQF 248 (271)
Q Consensus 237 EmEEELK~L~~L 248 (271)
++|++++.+++-
T Consensus 122 ~le~~~~~~~~~ 133 (484)
T 3lss_A 122 GLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888766543
No 126
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=64.51 E-value=34 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.168 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEE 206 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~ 206 (271)
+++.+..+++...+-++.+|+++++
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEE 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 127
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=64.42 E-value=13 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q psy9550 196 RLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEM 238 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEm 238 (271)
.|+.++++++++..+++..||. |.+-|+.||+-+--|
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEe------EqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEE------EQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4778888888888777666553 455555555544333
No 128
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=63.57 E-value=62 Score=26.73 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9550 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN 218 (271)
Q Consensus 180 ~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~ 218 (271)
+.+|+.-+++++.+.+.++.+|+.++.++...+...++.
T Consensus 55 ~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g 93 (277)
T 2f1m_A 55 PATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQ 93 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777777777777777777777766666665555543
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.89 E-value=15 Score=34.47 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|...|..+|+++++++.+++.+++
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~ 27 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNE 27 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877755544
No 130
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.52 E-value=15 Score=25.55 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 232 ERKLSEMEVELKELDQ 247 (271)
Q Consensus 232 ERKiSEmEEELK~L~~ 247 (271)
|.||.+++..||+|++
T Consensus 22 e~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 22 EQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 131
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=62.43 E-value=9.8 Score=28.31 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
|+=-|++|-..|+.+|..||.+++.|+..=+|
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55556778888888888888888888776654
No 132
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.41 E-value=5.1 Score=28.21 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~ 246 (271)
..|...|..+|..|++|+..|.
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777766553
No 133
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=62.19 E-value=52 Score=27.85 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
+..+..+..++..+.+++.+++. |.++.++|++||--+
T Consensus 76 easr~akk~~ea~la~l~~~~~~---LeAE~aKLeEekQIs 113 (146)
T 2xnx_M 76 EINRNLLGNAKLELDQLSSEKEQ---LTIEKAKLEEEKQIS 113 (146)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHH---HHHHHHHHGGGTTTC
T ss_pred HHHHHHHHhHHHHHHHHHhhHHH---HHHHHHHHHHHHHHh
Confidence 55566777888888888887655 668899999988533
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=61.94 E-value=7.1 Score=35.33 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=5.9
Q ss_pred HHHHHHHhhhhhc
Q psy9550 244 ELDQFKKENQRLK 256 (271)
Q Consensus 244 ~L~~LRadNQRLK 256 (271)
+|..||.|+++|+
T Consensus 83 El~~LkeElerL~ 95 (251)
T 3m9b_A 83 QLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444443
No 135
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.53 E-value=46 Score=31.98 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
.|+++-+++++.+.+.+++.-.++..-+.++..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~ 95 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE 95 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555555555555555444444444444433
No 136
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.58 E-value=39 Score=23.44 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=7.4
Q ss_pred HHHhhhhhcccccch
Q psy9550 248 FKKENQRLKDENGAL 262 (271)
Q Consensus 248 LRadNQRLKDENgAL 262 (271)
|+++.+.|++|+..|
T Consensus 41 L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 41 LQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 137
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=60.32 E-value=50 Score=26.97 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKN------SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~------SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
+..|.++|= .|......+|..+.+.|.++..+.|+. .-..--.-+--+||.||.|++..|-....
T Consensus 20 ~~~~ieeLq----~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 20 GSMTMEELQ----REINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp -CCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554443 333444445555555555555555532 11112223455788888888777665443
No 138
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=60.20 E-value=46 Score=27.93 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELKELD 246 (271)
Q Consensus 231 LERKiSEmEEELK~L~ 246 (271)
+|.+|..|.+.||...
T Consensus 75 yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 139
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.11 E-value=26 Score=32.24 Aligned_cols=45 Identities=7% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.++.|..+|...|...+.++.+|+..|+ .++.||.+|++.+.+|.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------------~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWR-------------VNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666654443 34566666666555444
No 140
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.98 E-value=8.4 Score=26.99 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhh
Q psy9550 235 LSEMEVELKELDQFKKENQRLKDENGALIRV 265 (271)
Q Consensus 235 iSEmEEELK~L~~LRadNQRLKDENgALIRV 265 (271)
+.+||.+ +.+|..||+.|+.|+..|-.-
T Consensus 24 ~~~LE~~---v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENR---VAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 445677888888887766543
No 141
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.72 E-value=48 Score=24.82 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
+...+..+|+..|+..+....++.....+ + -.|+-.|...+++.|+-...|...|.|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~---l---~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVT---L---LEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555444444443322111 1 113333333367777766666555544
No 142
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=58.98 E-value=10 Score=35.37 Aligned_cols=23 Identities=13% Similarity=0.498 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
+.|-+.|..+|.++|++++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776554
No 143
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.93 E-value=13 Score=34.43 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~ 213 (271)
+.+.|+.+|+.+++++.+++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~ 24 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKE 24 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666633
No 144
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=58.65 E-value=24 Score=27.06 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hc------chhHHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS---KN------SLSEQEKRERRTMERKLSEMEVE 241 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE---k~------SLlE~EkrERRaLERKiSEmEEE 241 (271)
-.-.||.+|...++|+.+++..+. |. -+..+ ..|.--|+.|+.+|++|
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl-NIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG-TIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh-HHHHHHHHHHHHHHhcC
Confidence 455788889999999988886654 11 13333 55666777777776654
No 145
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=58.47 E-value=9 Score=33.69 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhccc
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVE----LKELDQFKKENQRLKDE 258 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEE----LK~L~~LRadNQRLKDE 258 (271)
..|++...+.+.+..+++.++.|+.+++.+|++ |++++.+.+.| -|.+.+|.+..-++|=+
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~-------------Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLER-------------LEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------------------------CTTTHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhhhhhhhhHHHHHHHHHHHHHhhceee
Confidence 345556666666666666666666555555443 11112222222 25666677766666643
No 146
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=58.38 E-value=47 Score=30.79 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 224 EKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 224 EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
...+-|.+||+|.-+-=||-+|.+.|
T Consensus 231 ~~~~~~~~~~~~~~lkp~l~ql~k~r 256 (373)
T 3hhm_B 231 QAAEYREIDKRMNSIKPDLIQLRKTR 256 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHH
Confidence 34567788999998888887777755
No 147
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.12 E-value=48 Score=25.30 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 196 RLRETLSKTEEELNQVK 212 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk 212 (271)
+|++.+...+.|+..++
T Consensus 15 rl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 34444445555555554
No 148
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.87 E-value=33 Score=24.00 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=6.4
Q ss_pred HHHhhhhhcccccch
Q psy9550 248 FKKENQRLKDENGAL 262 (271)
Q Consensus 248 LRadNQRLKDENgAL 262 (271)
|+++...|++|+..|
T Consensus 41 L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 41 LASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=57.80 E-value=36 Score=24.67 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=19.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 218 NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 218 ~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
.+++..--..-+.|+.++.+|+ .+.++|+.||.+|-.-|..|
T Consensus 39 ~~iL~~Ai~YI~~L~~~~~~l~----------~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 39 AQILDKATEYIQYMRRKNHTHQ----------QDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 3444333334444444444444 44444455555554444444
No 150
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.40 E-value=36 Score=29.10 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
+.++.+||+...+++.++++|.+
T Consensus 62 ~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 62 RAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777776666
No 151
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=56.20 E-value=87 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=35.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 179 GELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
.--.||+.|...-.|--.|..+|+.+..++.+|-.+|.+
T Consensus 46 qR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~ 84 (140)
T 1xaw_A 46 QRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335799999999999999999999999999999888874
No 152
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=55.61 E-value=17 Score=30.01 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELK-ELDQFKKENQ 253 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK-~L~~LRadNQ 253 (271)
+.++++..+.+|++++.|.++.|. +++..+-|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~ 257 (261)
T 3sde_A 223 LDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQ 257 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344555555566666555555553 4455555444
No 153
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.10 E-value=49 Score=32.36 Aligned_cols=32 Identities=41% Similarity=0.390 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhhhhhcccc
Q psy9550 228 RRTMERKLSEMEVELK-----ELDQFKKENQRLKDEN 259 (271)
Q Consensus 228 RRaLERKiSEmEEELK-----~L~~LRadNQRLKDEN 259 (271)
.|+|+.|+.|-++-|+ ....|+.+.+.||.++
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 547 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666333332 4556666666666654
No 154
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=54.92 E-value=15 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 233 RKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 233 RKiSEmEEELK~L~~LRadNQRL 255 (271)
..|+.|.+|+++|..|-..-|.|
T Consensus 52 eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 52 SEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555554444443
No 155
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=54.71 E-value=10 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=17.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
.+-...|.+|-..+-.-...|+.+|.+++.++..+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444
No 156
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=54.20 E-value=49 Score=25.17 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcccccch
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL-DQFKKENQRLKDENGAL 262 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L-~~LRadNQRLKDENgAL 262 (271)
+....++|...|+-+|-.++.+=++.+. =...|-+||..||..+|.+ .+.-.+..--+||-++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~s---------sQ~KLKqRit~LE~~~~~~~~~~~s~~~~~~~e~~p~ 69 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYES---------MQQKLKQRLTKVEKFLKPLIDTEFSAIEGSGTESGPT 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccCCCchhhccCCccccCCC
Confidence 3445677777777777777777444432 3567889999999999964 33334444445555543
No 157
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=54.08 E-value=14 Score=29.83 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~ 213 (271)
..+..+|..+|++++.+|..++.
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 158
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.55 E-value=28 Score=27.25 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
+-+.|.+-|..|++.|+.|.+ -.+|++
T Consensus 21 ~E~~LD~~i~~~~~~l~~lte-d~~n~~ 47 (106)
T 2aze_B 21 SEQQLDHLMNICTTQLRLLSE-DTDSQR 47 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cccccc
Confidence 334778888888888887775 234444
No 159
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=53.25 E-value=4.4 Score=32.42 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 235 LSEMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 235 iSEmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
+.+||.|+ .+|..+.++|+.||+.|.+-|..|
T Consensus 60 ~~~LE~e~---~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 60 KEELEKQK---AELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHH---TTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444 556778888888888888777655
No 160
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=53.07 E-value=1.1 Score=34.95 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK 243 (271)
.+...++.+|+..+.++......|+ ..|++- ++..+++.|..++.++.
T Consensus 30 ~~~~~~~~el~~~~~el~~~~~~lq-~~ls~~---~~~~~~~el~~~~~~~q 77 (143)
T 1u2m_A 30 NEFKGRASELQRMETDLQAKMKKLQ-SMKAGS---DRTKLEKDVMAQRQTFA 77 (143)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHH---HHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544444 334432 34444444444444443
No 161
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.95 E-value=58 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk 212 (271)
-..+|+.+|++++.++.+..
T Consensus 16 RkkkL~~Ki~el~~ei~ke~ 35 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEV 35 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766554
No 162
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.91 E-value=24 Score=32.82 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~ 247 (271)
+.|-+.|..+|.++|++++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777776665544
No 163
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=52.78 E-value=7.4 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTE 205 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~ 205 (271)
|++...||..|+.+|++++
T Consensus 36 ~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 164
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.55 E-value=20 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
||.++.+..+|...|...+.++..+...|.. |+.-|...|.....+|.||..|
T Consensus 27 le~l~~~l~~l~~~l~~~~~e~~~L~~~l~e------E~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 27 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK------ENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTHHHHHHH------TTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555566666666555542 2333444455555555555444
No 165
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.51 E-value=13 Score=28.65 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEE 206 (271)
Q Consensus 194 NErLk~~L~e~~~ 206 (271)
|..|..+|.+++.
T Consensus 21 ~~~LE~~l~e~E~ 33 (95)
T 3mov_A 21 SRACLERIQELED 33 (95)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 166
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=52.38 E-value=67 Score=24.23 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcc--hhHH--HHHHHHHHHHHHHHHHHHHHHHHH-
Q psy9550 181 LDYKKLYEESQAELSRLR--------ETLSKTEEELNQVKATYSKNS--LSEQ--EKRERRTMERKLSEMEVELKELDQ- 247 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk--------~~L~e~~~El~qlk~~LEk~S--LlE~--EkrERRaLERKiSEmEEELK~L~~- 247 (271)
-||+.+++++.....++. ..|.+++..+.++..-|++.- +..+ -.-.|..|-.||-+-.-+| ..
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl---~~~ 84 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTI---QSD 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHH
Confidence 478888888887776654 344555555555544433211 0111 1224555665555443333 33
Q ss_pred HHHhhhhhc
Q psy9550 248 FKKENQRLK 256 (271)
Q Consensus 248 LRadNQRLK 256 (271)
||.+-++|-
T Consensus 85 lk~~lk~l~ 93 (97)
T 3onj_A 85 IKRPLQSLV 93 (97)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHhh
Confidence 444444443
No 167
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.36 E-value=96 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhhhccc
Q psy9550 229 RTMERKLSEMEVELKELD-QFKKENQRLKDE 258 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~-~LRadNQRLKDE 258 (271)
..||.|.+.-+..+++|+ +++.-|++|++-
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777665555443 345556666654
No 168
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=52.30 E-value=76 Score=24.20 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy9550 195 SRLRETL 201 (271)
Q Consensus 195 ErLk~~L 201 (271)
++||++|
T Consensus 10 DKLRrrl 16 (78)
T 3iv1_A 10 DKLRWRM 16 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 169
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=51.68 E-value=12 Score=33.89 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.+.|++|+.+|+++.+|+..+|.+|+
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444
No 170
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=51.64 E-value=36 Score=25.63 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHH
Q psy9550 201 LSKTEEELNQVKATYS---KNSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 201 L~e~~~El~qlk~~LE---k~SLlE~EkrERRaLERKiSE 237 (271)
+++++..|.+++..|+ +..+-++=..|.+.||++|+.
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~ 44 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTRKRLRDTLTSEKSKIETELKN 44 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776666 333322223344445544443
No 171
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=51.42 E-value=12 Score=26.13 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 230 TMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
.||.++..|+.|.. .|+.+++.|+++
T Consensus 26 ~LE~~v~~L~~eN~---~L~~~~~~L~~~ 51 (55)
T 1dh3_A 26 SLENRVAVLENQNK---TLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45666666666543 344555555543
No 172
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=51.29 E-value=2.1 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhc
Q psy9550 225 KRERRTMERKLSEMEVELK-ELDQFKKENQRLK 256 (271)
Q Consensus 225 krERRaLERKiSEmEEELK-~L~~LRadNQRLK 256 (271)
.-+|..++-||+++|++++ .|+.|+++.+.|+
T Consensus 353 ~~~r~e~~~~~~~~e~~~~~~~~~~~~~~~~~~ 385 (386)
T 2bnx_A 353 LTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385 (386)
T ss_dssp ---------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466777888888888765 5666666666664
No 173
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=50.82 E-value=20 Score=27.45 Aligned_cols=40 Identities=23% Similarity=0.488 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---ccccchhhhhhcc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLK---DENGALIRVISKL 269 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLK---DENgALIRVISKL 269 (271)
|.+.|...|.++++|+. .||.+|..|| ++=..|+=||-+|
T Consensus 35 EN~~Lh~~ie~~~eEi~---~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIA---RLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555553 4455555444 3444555555544
No 174
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.55 E-value=58 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~L 248 (271)
-+..+...+++++..+|+|++=
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ 90 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAE 90 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666543
No 175
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.30 E-value=96 Score=24.81 Aligned_cols=18 Identities=11% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTE 205 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~ 205 (271)
.++..+|+.|+.++.+..
T Consensus 60 ~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 176
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=49.96 E-value=20 Score=30.94 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.+++.+|++|+.+.+.++.|.+++..+||
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455556666666666656555555554
No 177
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=49.37 E-value=61 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhh
Q psy9550 238 MEVELKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 238 mEEELK~L~~LRadNQRLKDENgALIR 264 (271)
+.+--..|..+=.+-+.+.+-||.||.
T Consensus 90 l~~~w~~l~~l~~~c~~~N~~Ng~Li~ 116 (154)
T 3opc_A 90 LGPLWQALQANAAQAREHNQRNGTLIA 116 (154)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666777788888999985
No 178
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.21 E-value=25 Score=24.42 Aligned_cols=33 Identities=48% Similarity=0.611 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
|.|+|.+ .+.||.|++|||+-+-.|+ .|||=|+
T Consensus 5 l~eLE~r-~k~le~~naeLEervstLq---~EN~mLR 37 (42)
T 2oqq_A 5 LSELENR-VKDLENKNSELEERLSTLQ---NENQMLR 37 (42)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH---HhHHHHH
Confidence 5677665 4568999999998876654 4665543
No 179
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.14 E-value=19 Score=25.95 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
+..|++++.+++++++.|+.++...+.+
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555543
No 180
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=48.52 E-value=60 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 193 ENErLk~~L~e~~~El~ql 211 (271)
+.+.||.++++.+.+|.++
T Consensus 13 ~L~~lR~~ID~iD~~Ll~L 31 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILAL 31 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4678888999999888777
No 181
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.50 E-value=90 Score=23.94 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
+|+++-+....+-..+.-++.|+.++|.+-... ...++ +..|.+|++.+..|.+|....
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~-~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA-QHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555666554322110 01111 345666777777777776643
No 182
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=48.44 E-value=15 Score=32.32 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELK 243 (271)
Q Consensus 227 ERRaLERKiSEmEEELK 243 (271)
|.++||++|.+|+.+++
T Consensus 163 En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 163 AHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555555543
No 183
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=48.28 E-value=1e+02 Score=24.48 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hc------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEEELNQVKATYS-------KN------SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LE-------k~------SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.++|+.+|...+.+|.-++..|+ +. .-..--.-+--+|+.||+|+...|-.+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555554443 21 11111123445788888888777665554
No 184
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=48.03 E-value=1.1e+02 Score=24.60 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hc--chhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKATYS---KN--SLSEQEKRERRT---MERKLSEMEVELKELDQ 247 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~LE---k~--SLlE~EkrERRa---LERKiSEmEEELK~L~~ 247 (271)
+-.--+.-|+.+|..+++-+.+..++.- +. .|.+.=++|+.. -..++.|||.|+|.|.+
T Consensus 15 ECrNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq 81 (99)
T 3ni0_A 15 ECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334445677888888877776665432 11 121111223322 24678999999887743
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.91 E-value=1.1e+02 Score=24.60 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
-|.++..-|-+|-.+=....=|+.-+|..||- -.+.+ =+|.++.|+.|+|..-.....|+.+...|++
T Consensus 10 KyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aq----l~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 10 KYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAE----SRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776666666667777766652 12222 2555666777777666677777766666553
No 186
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=47.07 E-value=8.8 Score=29.43 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEV 240 (271)
Q Consensus 227 ERRaLERKiSEmEE 240 (271)
||..++..|.++++
T Consensus 47 ek~~I~~~i~el~~ 60 (120)
T 2p32_A 47 DKKKIEDKCDEILK 60 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 187
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.05 E-value=88 Score=30.07 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q psy9550 238 MEVELKELDQFKKE 251 (271)
Q Consensus 238 mEEELK~L~~LRad 251 (271)
-|+++|+|.++++.
T Consensus 181 ye~qqKQL~qv~a~ 194 (390)
T 1deq_A 181 YKNQQKQLEQVIAI 194 (390)
T ss_pred HHHHHHHHHhhhhh
Confidence 45556666666544
No 188
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=46.99 E-value=65 Score=28.12 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 224 EKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 224 EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
+..-+.+++.=+.+| |-+|++|..
T Consensus 101 e~~~~~a~e~~~~~L---LpVlDnler 124 (213)
T 4ani_A 101 EAAEKYRAQSLASDL---LPVLDNFER 124 (213)
T ss_dssp HHHHHHTTHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHH
Confidence 333334444433333 666666653
No 189
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.88 E-value=19 Score=26.22 Aligned_cols=8 Identities=0% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy9550 231 MERKLSEM 238 (271)
Q Consensus 231 LERKiSEm 238 (271)
|+..+.+|
T Consensus 59 l~~e~~~L 66 (83)
T 1nkp_B 59 HQQDIDDL 66 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 190
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.69 E-value=19 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKE 244 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~ 244 (271)
.+|..+||.||+-|...+.-
T Consensus 6 efendaleqkiaalkqkias 25 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 56888999999887665443
No 191
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=45.71 E-value=24 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
..|+.++.+++++++.|++++...+.+.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655544
No 192
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.66 E-value=33 Score=28.36 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=5.8
Q ss_pred HHHHHHhhhhh
Q psy9550 245 LDQFKKENQRL 255 (271)
Q Consensus 245 L~~LRadNQRL 255 (271)
+++||.+|+-|
T Consensus 94 ~erlr~~~~~~ 104 (121)
T 3mq7_A 94 VERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhchhh
Confidence 44556666533
No 193
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.58 E-value=16 Score=32.86 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~L 248 (271)
|..+|+.++.+|++|++.|+++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555433
No 194
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=45.55 E-value=1.2e+02 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~ 213 (271)
++++.+.+..+.+++.++.++...+.
T Consensus 79 ~~~~a~l~~a~~~~~~a~~~~~r~~~ 104 (341)
T 3fpp_A 79 MELRAQRQQAEAELKLARVTYSRQQR 104 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 195
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=45.49 E-value=21 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
..|.+.++..|...+.++.++|.++
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666664444
No 196
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.08 E-value=27 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQVKA 213 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~ 213 (271)
..+.|.|+.++++++.++.+++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555543
No 197
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=44.73 E-value=1e+02 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 193 ELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk~~LE 216 (271)
+.+.++.+|+.++.++.+++.+++
T Consensus 71 ~l~~~~a~l~~~~a~l~~a~~~~~ 94 (369)
T 4dk0_A 71 TLNTRKAALASYQAQLVARKTAYD 94 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444
No 198
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.64 E-value=1.2e+02 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9550 199 ETLSKTEEELNQVKATY 215 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~L 215 (271)
..|++++.|+.+...+|
T Consensus 35 ~~ieeLQ~Ei~~~E~QL 51 (107)
T 2k48_A 35 STLQELQENITAHEQQL 51 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 199
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=44.55 E-value=70 Score=27.28 Aligned_cols=53 Identities=11% Similarity=0.389 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
.-+++|+..|+++..--.+|...|+. ...+-|.|||+|..+-=+|-+|...|.
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~------q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRA------QASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34556677766665555555444432 244667889999999888888887774
No 200
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.07 E-value=75 Score=22.25 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=5.6
Q ss_pred HHHHHHhhhhhc
Q psy9550 245 LDQFKKENQRLK 256 (271)
Q Consensus 245 L~~LRadNQRLK 256 (271)
|..||...|-||
T Consensus 36 laalksklqalk 47 (48)
T 1g6u_A 36 LAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 334455555444
No 201
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=44.04 E-value=16 Score=28.89 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=15.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 215 YSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 215 LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
+.|.++++.--..-+.|+..+..|+++...+..|.++|+.|+
T Consensus 63 ~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~ 104 (118)
T 4ati_A 63 WNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLL 104 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444445555555555555545555555554444
No 202
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=44.03 E-value=1.2e+02 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhc------ccccchhhhhhcc
Q psy9550 225 KRERRTMERKLSEMEVELKEL--DQFKKENQRLK------DENGALIRVISKL 269 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L--~~LRadNQRLK------DENgALIRVISKL 269 (271)
+.++..-++|+.|..+-++.= .++|++-+|.- +|+..|..|+++|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~g~~~~e~q~~~~vl~~l 99 (323)
T 1ij5_A 47 AQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDL 99 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcChhhhhHHHHHHHHhhcCCCCCcchhhHHHHHHH
Confidence 444444456666665555433 44555544433 3444556666655
No 203
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=43.99 E-value=38 Score=25.31 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVEL 242 (271)
Q Consensus 227 ERRaLERKiSEmEEEL 242 (271)
+|..++..|.++++-|
T Consensus 38 ek~~i~~~i~e~~~wL 53 (113)
T 3lof_A 38 DKKKVLDKCQEVISWL 53 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554444
No 204
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=43.55 E-value=62 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhc
Q psy9550 225 KRERRTMERKLSEMEVELK--ELDQFKKENQRLK 256 (271)
Q Consensus 225 krERRaLERKiSEmEEELK--~L~~LRadNQRLK 256 (271)
..||..++..|.++++-|. ..++++...+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 592 (605)
T 4b9q_A 559 ADDKTAIESALTALETALKGEDKAAIEAKMQELA 592 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5588888999988888775 2444444444444
No 205
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.45 E-value=23 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q psy9550 240 VELKELDQFKKENQRLKDENG 260 (271)
Q Consensus 240 EELK~L~~LRadNQRLKDENg 260 (271)
+.+..+.+|..+||-|+....
T Consensus 36 ~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 36 NTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccc
Confidence 333445555556666654443
No 206
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.35 E-value=35 Score=31.97 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhhcccccchhh
Q psy9550 195 SRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFK---KENQRLKDENGALIR 264 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LR---adNQRLKDENgALIR 264 (271)
..|..+|+.+++++..++.+.+. + +.|.+.+.+++..+++|+|.|+..- .+-..+-|+|.|+|.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~-----l-~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~ 111 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY-----I-KDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVS 111 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEe
Confidence 34444455555554444333221 1 3455667777777777776553211 122334466766643
No 207
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=42.97 E-value=53 Score=27.14 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYSKN 218 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LEk~ 218 (271)
..+.+.++.+|+.++.++..++.++++.
T Consensus 59 ~~~l~~a~a~l~~a~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 59 QATYDSAKGDLAKAQAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777666666653
No 208
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.95 E-value=16 Score=27.01 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchhhhhhc
Q psy9550 234 KLSEMEVELKELDQFKKENQRLKDENGALIRVISK 268 (271)
Q Consensus 234 KiSEmEEELK~L~~LRadNQRLKDENgALIRVISK 268 (271)
|++=|++-+.-+..|+.++++|++||.+|=.-|-.
T Consensus 41 Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45557777778888888888888888888666543
No 209
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=42.85 E-value=1.3e+02 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHhhhhhcc
Q psy9550 229 RTMERKLSEMEVELK----ELDQFKKENQRLKD 257 (271)
Q Consensus 229 RaLERKiSEmEEELK----~L~~LRadNQRLKD 257 (271)
+++......++.-|+ .+.+|+.+.+.|++
T Consensus 158 ~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~ 190 (346)
T 2nrj_A 158 RAFGSNKELLQSILKNQGADVDADQKRLEEVLG 190 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTG
T ss_pred hhHHhHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 345555555555443 45566655555443
No 210
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=42.68 E-value=56 Score=31.11 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhcc
Q psy9550 224 EKRERRTMERKLSEMEVELK--ELDQFKKENQRLKD 257 (271)
Q Consensus 224 EkrERRaLERKiSEmEEELK--~L~~LRadNQRLKD 257 (271)
...||..++..|.++++-|. ..+++++..+.|++
T Consensus 558 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 593 (605)
T 2kho_A 558 PADDKTAIESALTALETALKGEDKAAIEAKMQELAQ 593 (605)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35688889999999887765 34455555555544
No 211
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.01 E-value=1.4e+02 Score=24.39 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=19.6
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHH-HHHH
Q psy9550 222 EQEKRERR--TMERKLSEMEVELKEL-DQFK 249 (271)
Q Consensus 222 E~EkrERR--aLERKiSEmEEELK~L-~~LR 249 (271)
++|+-|-| +.|.+|.+||++|+++ ..||
T Consensus 88 dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 88 DLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 5789999999999954 3444
No 212
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=41.47 E-value=70 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=11.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 217 KNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 217 k~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
+....|+..| .+.+++++.+|+.|
T Consensus 64 ~~~~~EI~~R-----k~~v~~l~~~i~~l 87 (95)
T 2c5k_T 64 RDENEDVSGR-----EAQVKNIKQQLDAL 87 (95)
T ss_dssp TSTTCCCHHH-----HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4444555555 34455555554433
No 213
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.24 E-value=1.2e+02 Score=23.40 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 230 TMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
..|.|..+|+.|++ .|+.+...|++|..|-
T Consensus 49 eae~rn~eL~~e~~---~l~~~~eelq~~~~~~ 78 (81)
T 1wt6_A 49 EAEARNRDLEAHVR---QLQERMELLQAEGATA 78 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHccchhh
Confidence 34555555555543 3333444466665543
No 214
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=41.02 E-value=32 Score=23.20 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~ 247 (271)
-..||.+|.+||.+|..|..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677778888777766544
No 215
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=40.70 E-value=78 Score=26.35 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 193 ENErLk~~L~e~~~El~qlk 212 (271)
..|.|+++|++.+++++++.
T Consensus 6 ~~ee~~e~L~~~e~l~~el~ 25 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAELN 25 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 45677888888777777763
No 216
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=40.13 E-value=1.1e+02 Score=26.92 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9550 234 KLSEMEVELKELDQFK 249 (271)
Q Consensus 234 KiSEmEEELK~L~~LR 249 (271)
++.++++.+..+..|+
T Consensus 206 ~l~~~~~r~~~~~~l~ 221 (371)
T 3auy_A 206 EKEKLTKFVEYLDKVR 221 (371)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 217
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.10 E-value=79 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 195 SRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
++|...++..+.++..+ ...+..|+.++.|+++-+..|..|+.
T Consensus 4 ~~l~~~~q~l~~~~~~l-------------~~~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELI-------------QQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444555555544444 33455567777777777777777763
No 218
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.96 E-value=84 Score=24.31 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKATYSKN 218 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~LEk~ 218 (271)
+.+..+...|+.++.+++.++.+++++|...
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567778888888888888888888777643
No 219
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.91 E-value=34 Score=25.45 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 200 TLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 200 ~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|++.-.-+.+++..++... .+ -+..|++++.+++++++.|+.+.+..+.+.
T Consensus 54 ~l~~~G~~l~~I~~~l~~~~---~~--~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 54 FFKEIGFRLDEIKEMLDHPN---FD--RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHTTCCHHHHHHHHHCTT---SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHhCCC---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443334666665554321 01 245678888888888888877777666543
No 220
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=39.42 E-value=13 Score=28.33 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy9550 200 TLSKTEEELNQVKATYS 216 (271)
Q Consensus 200 ~L~e~~~El~qlk~~LE 216 (271)
+|+.+++|++|+..+|+
T Consensus 14 elqalekelaqlekelq 30 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQ 30 (80)
T ss_dssp TTHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777778888877765
No 221
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.34 E-value=27 Score=24.96 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=6.5
Q ss_pred HHhhhhhcccccch
Q psy9550 249 KKENQRLKDENGAL 262 (271)
Q Consensus 249 RadNQRLKDENgAL 262 (271)
+.+|..|+.|...|
T Consensus 43 ~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 43 LSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444433
No 222
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.19 E-value=41 Score=26.64 Aligned_cols=22 Identities=5% Similarity=0.184 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy9550 230 TMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRad 251 (271)
.|+.++.+++++++.|+++++.
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~ 106 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDR 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444443
No 223
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.05 E-value=45 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~ql 211 (271)
.+++.|.||+.++..++-|++-+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 35667777777666665555443
No 224
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=38.97 E-value=48 Score=27.44 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 199 ETLSKTEEELNQVKATYSKN--SLSEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~--SLlE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
..|+++-.-|.+++.-|+.. .+.++=...+..|+++|.+|+..++.|+.+.
T Consensus 57 ~~l~~~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 57 KSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHTTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444466666555432 1111212334444555555555444444443
No 225
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.57 E-value=1.4e+02 Score=25.76 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 186 LYEESQAELSRLRETLSKTEEELN 209 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~ 209 (271)
-...+..||++|...+.++..++.
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777766666665544
No 226
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=38.28 E-value=49 Score=31.31 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L 245 (271)
|.++-+.|-..|+.++.++|.+|+.|
T Consensus 88 ~~~~a~~e~~~l~~~l~~le~~l~~l 113 (371)
T 1zbt_A 88 LEEMAKEELKNSKVAKEEYEEKLRFL 113 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444566677777777777776643
No 227
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.79 E-value=1.1e+02 Score=21.70 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRE 199 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~ 199 (271)
|.-++..+.+++-|.+-.
T Consensus 6 DL~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAA 23 (77)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 444444555555444443
No 228
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.69 E-value=81 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc
Q psy9550 236 SEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 236 SEmEEELK~L~~LRadNQRLKD 257 (271)
.||+++...+..|-..|+.+.+
T Consensus 29 qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 29 QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666777777777653
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.68 E-value=2.1e+02 Score=27.99 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRL 197 (271)
Q Consensus 185 kLYE~~k~ENErL 197 (271)
|--+++++++|..
T Consensus 487 k~~~~~~~~~e~~ 499 (592)
T 1f5n_A 487 KEIEVERVKAESA 499 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 230
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=37.26 E-value=74 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 186 LYEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 186 LYE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
-|-+.+.++..|..+|++++.|.+...++|+.
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~ 203 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQ 203 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888889999999999988888877763
No 231
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.20 E-value=1.9e+02 Score=27.42 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 190 SQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
..++.|.+..+|+.+..++.++...|
T Consensus 39 ~l~~LE~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 39 ELLEIEGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554433
No 232
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.13 E-value=48 Score=29.75 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L 245 (271)
.+.++|+..|.+||.+...+
T Consensus 192 ~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 192 AKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45555566666665554333
No 233
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=37.04 E-value=12 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhhhhcc
Q psy9550 237 EMEVELKELDQFKKENQRLKDENGALIRVISKL 269 (271)
Q Consensus 237 EmEEELK~L~~LRadNQRLKDENgALIRVISKL 269 (271)
+|+.+.+.|.+...++.+|..+|..|.+-|..|
T Consensus 78 ~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 78 KLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666667777788888766544
No 234
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.79 E-value=31 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy9550 239 EVELKELDQFKKENQRLK 256 (271)
Q Consensus 239 EEELK~L~~LRadNQRLK 256 (271)
.|--+.|+.|+++.++++
T Consensus 65 ~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 65 AETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445666666666654
No 235
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=36.78 E-value=1.5e+02 Score=23.76 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 181 LDYKKLYEESQAELSRLR--------ETLSKTEEELNQVKATYS----KNSLSEQEKRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 181 ~DYKkLYE~~k~ENErLk--------~~L~e~~~El~qlk~~LE----k~SLlE~EkrERRaLERKiSEmEEELK~L~~L 248 (271)
.++=..|+++..--++.- ++|-+.+.+-.++-..|. ...|.+.++..++.|=++|-+.|-|+|.|.+-
T Consensus 18 ~~ll~~Yq~Il~lS~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~p 97 (126)
T 3h3m_A 18 APVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALP 97 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345567776665555443 222233333222222222 34678888888999999999999999988766
Q ss_pred HHh
Q psy9550 249 KKE 251 (271)
Q Consensus 249 Rad 251 (271)
|.|
T Consensus 98 rl~ 100 (126)
T 3h3m_A 98 QLA 100 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 236
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=36.67 E-value=2e+02 Score=28.85 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q psy9550 201 LSKTEEELNQVKATYSKNSLSEQEKRERRT-----MERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 201 L~e~~~El~qlk~~LEk~SLlE~EkrERRa-----LERKiSEmEEELK~L~~LRad 251 (271)
+..++.++.++|++|+.+--+=.+.+||.+ +.-+-++|++-.|.|.++.++
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~ 371 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAE 371 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHh
Confidence 355566666666666533222233444422 444445566666666666654
No 237
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.54 E-value=91 Score=30.19 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L 245 (271)
.+++..||++|-+||+|.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~ 354 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERS 354 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776643
No 238
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=36.45 E-value=36 Score=30.27 Aligned_cols=32 Identities=41% Similarity=0.461 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKENQRLKDEN 259 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadNQRLKDEN 259 (271)
|.||+.-+.|=++=-+.+..|..++.+||.||
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn 138 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKEN 138 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333334444444444444444
No 239
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=36.31 E-value=39 Score=30.96 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~L 248 (271)
..|+.||..||..+.++..+
T Consensus 38 e~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 38 EHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777665544
No 240
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=35.88 E-value=1.3e+02 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
++-..+.+.++..|+.++..+.+++..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~ 34 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRK 34 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666655543
No 241
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=35.65 E-value=2.1e+02 Score=26.11 Aligned_cols=65 Identities=15% Similarity=0.368 Sum_probs=39.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 177 ENGELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 177 e~~~~DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
..+......||..+..-+.---.+..+++.++.++ +++-+.+|+++.|+ +.-+..|.-+.||+|
T Consensus 194 stDAVNv~QL~~s~~~an~yTd~k~~~l~n~I~~V-------------~n~~~q~~~~~~~~---~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 194 DTDAVNYAQLKRSVEEANTYTDQKMGEMNSKIKGV-------------ENKMKQIEDKIEEI---LSKIYHIENEIARIK 257 (268)
T ss_dssp TTSBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34568999999866655554444445555555544 34445556665443 445666777777776
Q ss_pred c
Q psy9550 257 D 257 (271)
Q Consensus 257 D 257 (271)
.
T Consensus 258 ~ 258 (268)
T 2yo3_A 258 K 258 (268)
T ss_dssp C
T ss_pred h
Confidence 4
No 242
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=35.62 E-value=1.9e+02 Score=24.07 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LR 249 (271)
||..++.++..+...|+++..|.
T Consensus 85 ek~~r~e~k~~l~~ql~qv~~L~ 107 (150)
T 4dci_A 85 KRSELEEQKRNLLQQQAQVRELE 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555555666666666655553
No 243
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=35.56 E-value=1.4e+02 Score=23.64 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 218 NSLSEQEKRERRTMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 218 ~SLlE~EkrERRaLERKiSEmEEELK~L~~LRad 251 (271)
..+...++..++.+=++|-+.|-|+|.|.+-+.|
T Consensus 54 ~~l~~~~~~~~~~lL~~IL~nDaeIr~Ll~~rl~ 87 (122)
T 3a7m_A 54 PGITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLD 87 (122)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3577888999999999999999999988765543
No 244
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=35.20 E-value=1.4e+02 Score=22.48 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 183 YKkLYE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
|......+....+..+..|..++.++...+
T Consensus 72 ~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r 101 (150)
T 3ajw_A 72 YQQFIQTLEKAIEQHRLQLTQWTQKVDLAL 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443
No 245
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.52 E-value=52 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVKAT 214 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk~~ 214 (271)
++.+..+|.-+++..++.++++++..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777766543
No 246
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=34.47 E-value=38 Score=26.78 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh--hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTE---EELNQVKATYS--KNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~---~El~qlk~~LE--k~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
+-.-..+.++|+.++...+ .++.-++++.+ +.. -..|+..|..|.-+..+|+++|..|.
T Consensus 18 L~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~D-F~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 18 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD-FQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334455666666665555 34455566655 322 24566677777777888888887664
No 247
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=34.37 E-value=39 Score=25.12 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 199 ETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
..|++.---+.+++.-|+... ..-+..|++++.+++++++.|+++....+.+.+
T Consensus 52 ~~lr~~G~sl~~I~~~l~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 52 LFYRELGFPLDEVAALLDDPA-----ADPRAHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp HHHHHTTCCHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHHhCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444666665554321 112346777777777777777777776665543
No 248
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.35 E-value=99 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 191 QAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~ql 211 (271)
.+|.++|+.++.+.+..+.+.
T Consensus 17 e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554433
No 249
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=34.30 E-value=1.6e+02 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~El~ql 211 (271)
...+.+.||.++++++.+|.+|
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999988776
No 250
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=34.20 E-value=2.1e+02 Score=24.41 Aligned_cols=31 Identities=6% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+++++.+.+..+.+|+.++.++...+...++
T Consensus 93 l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~ 123 (359)
T 3lnn_A 93 LAQANSDAAKARAAMTMARRNLDRQRELDKS 123 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556666667777777777776666555543
No 251
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=34.15 E-value=45 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~ql 211 (271)
+++.|...|+.+++.+..|+.++
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 46777778888888777777765
No 252
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.10 E-value=1.8e+02 Score=28.07 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 190 SQAELSRLRETLSKTEEE 207 (271)
Q Consensus 190 ~k~ENErLk~~L~e~~~E 207 (271)
++..++.|+..|+++...
T Consensus 98 V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 556677777777666543
No 253
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.96 E-value=1.4e+02 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
.+++..+.+.|+.++..++.+....|
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 254
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.45 E-value=44 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRL 255 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRL 255 (271)
.+..|+++|.+|+.-++.|++.-+.-+.+
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444433
No 255
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=33.40 E-value=0.98 Score=33.06 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhhcccccchhhh
Q psy9550 242 LKELDQFKKENQRLKDENGALIRV 265 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgALIRV 265 (271)
.+.+.+|+.+|.+|+.||..|=..
T Consensus 70 ~~e~~~L~~e~~~L~~e~~iLKka 93 (108)
T 2rn7_A 70 RQRLKEPERENRELRRSNDILRLA 93 (108)
T ss_dssp SSCCCCCCSCCCCCSCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999876443
No 256
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.86 E-value=48 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 226 RERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
..-+.|+++...++.++ +.|+.+|+.|+.+
T Consensus 52 ~YI~~L~~~~~~l~~~~---~~L~~~n~~L~~r 81 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEE---DLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33444454444444443 2355555555443
No 257
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=32.84 E-value=71 Score=27.74 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNSL-SEQEKRERRTMERKLSEMEVELK 243 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~SL-lE~EkrERRaLERKiSEmEEELK 243 (271)
+.-+++.|+..-..+..+..+|++..- .+-...-.+.|+++|..+||.||
T Consensus 186 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~~~~i~e~~~ 236 (244)
T 3gnl_A 186 SAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVLK 236 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444544331 21112223356666666666665
No 258
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.77 E-value=44 Score=26.98 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L 245 (271)
+...+.+++++.++|..++.+
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~ 194 (203)
T 3qks_A 174 SELKKTINNRIKEYRDILART 194 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777777777654
No 259
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.66 E-value=2.5e+02 Score=27.21 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhcccc
Q psy9550 245 LDQFKKENQRLKDEN 259 (271)
Q Consensus 245 L~~LRadNQRLKDEN 259 (271)
|+.|+..+|+|+..-
T Consensus 177 ~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 177 IDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 260
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=32.54 E-value=1.9e+02 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 219 SLSEQEKRERRTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 219 SLlE~EkrERRaLERKiSEmEEELK~L~~LRa 250 (271)
.+...+...++.+=++|-+.|-|+|.|.+-|.
T Consensus 58 ~ls~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl 89 (123)
T 3nkz_A 58 CSSLMLQDLLREKLRAILDNEIEIKRLLQLRL 89 (123)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46677788889999999999999998766554
No 261
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.52 E-value=26 Score=27.28 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhhh
Q psy9550 236 SEMEVELKELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 236 SEmEEELK~L~~LRadNQRLKDENgALIRVI 266 (271)
.+||.|.. +|..+.+.|+.||..+.+-|
T Consensus 51 ~~LE~e~~---~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 51 HHLENEKT---QLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444433 23445555555555554444
No 262
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.48 E-value=93 Score=24.13 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhh
Q psy9550 244 ELDQFKKENQRL 255 (271)
Q Consensus 244 ~L~~LRadNQRL 255 (271)
+++.+|...+.|
T Consensus 77 e~d~~k~k~~~L 88 (90)
T 2wt7_B 77 ERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 445555555544
No 263
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.43 E-value=1e+02 Score=21.81 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy9550 231 MERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 231 LERKiSEmEEELK~L~~LRadN 252 (271)
||-.++++|.|+.-|..|=.++
T Consensus 23 Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 23 LEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccHHHHHHHHHHHHHHHc
Confidence 4556666666666666554443
No 264
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=31.86 E-value=33 Score=31.93 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=14.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQA----ELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~----ENErLk~~L~e~~~El~ql 211 (271)
.||-..+. +.+.||.++++.+.||.+|
T Consensus 17 ~~~~~~~~M~~~~L~~lR~~ID~ID~~il~L 47 (385)
T 3nvt_A 17 NLYFQSNAMVNTNLEELRTQVDQLNIDLLEL 47 (385)
T ss_dssp ---------------CCTTTTTHHHHHHHHH
T ss_pred chhhhhccCChhHHHHHHHHHHHHHHHHHHH
Confidence 35544444 7889999999999998877
No 265
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.81 E-value=1.7e+02 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~ 247 (271)
+..+|-.++.++-+++|.|++
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 444565666666666665543
No 266
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.75 E-value=42 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhhcc
Q psy9550 244 ELDQFKKENQRLKD 257 (271)
Q Consensus 244 ~L~~LRadNQRLKD 257 (271)
.-.+|..+..|||+
T Consensus 16 ~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 16 KNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 33455666666653
No 267
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.74 E-value=2.2e+02 Score=23.66 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
=+...+.+.+++++..+.|..=...-+.|.
T Consensus 78 iq~q~~~ek~~r~e~k~~l~~ql~qv~~L~ 107 (150)
T 4dci_A 78 IQQQVAGKRSELEEQKRNLLQQQAQVRELE 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778888999888887776666666664
No 268
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=31.70 E-value=38 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVELKELD 246 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~ 246 (271)
.+||+|++-||-.|..|+
T Consensus 4 ealekkcaalesklqale 21 (31)
T 3ljm_A 4 EALEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666665555443
No 269
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=31.41 E-value=1.2e+02 Score=21.82 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=5.4
Q ss_pred Hhhhhhccc
Q psy9550 250 KENQRLKDE 258 (271)
Q Consensus 250 adNQRLKDE 258 (271)
+|..||++|
T Consensus 43 ~El~RLe~E 51 (51)
T 2lw9_A 43 QELRRLEEE 51 (51)
T ss_dssp HHSCCCSCC
T ss_pred HHHHHhhcC
Confidence 556666655
No 270
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=31.37 E-value=32 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L 245 (271)
-|++.+|++|.+++++|..|
T Consensus 112 Te~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 112 TKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 36777888888888887754
No 271
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=31.24 E-value=10 Score=33.96 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH
Q psy9550 179 GELDYKKLYEESQAELSRLRETL 201 (271)
Q Consensus 179 ~~~DYKkLYE~~k~ENErLk~~L 201 (271)
+...|++.|++++...+++..+.
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~ 196 (430)
T 1w1w_A 174 GSIQYKKEYEELKEKIEKLSKSA 196 (430)
T ss_dssp -----------------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34577888887777666665443
No 272
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=30.89 E-value=1.8e+02 Score=22.21 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhhcccccchhh
Q psy9550 243 KELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 243 K~L~~LRadNQRLKDENgALIR 264 (271)
..|..+=.+-+.+.+-||.||.
T Consensus 96 ~~l~~l~~~~~~~N~~Ng~Li~ 117 (157)
T 2fup_A 96 DELGELLERCQQANLRNGRIIR 117 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666677888774
No 273
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=30.74 E-value=71 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLKDE 258 (271)
.-.++.+.+.++..++..++++.+++..++... ...++++.-.+-+++--|+|.+.++..|+..-.+|..+
T Consensus 311 L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q 381 (406)
T 4dyl_A 311 LTSVTDELAVATEMVFRRQEMVTQLQQELRNEE-ENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQ 381 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444444444444555544443210 00111111233457777899999999998777777654
No 274
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=30.66 E-value=2e+02 Score=22.64 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEM 238 (271)
Q Consensus 225 krERRaLERKiSEm 238 (271)
=+||+.-|++|.||
T Consensus 65 ~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 65 LREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 57888889888765
No 275
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=30.54 E-value=1.6e+02 Score=21.71 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhc-chhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy9550 199 ETLSKTEEELNQVKATYSKN-SLSEQEKRERR-TMERKLSEMEVELKELD 246 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~-SLlE~EkrERR-aLERKiSEmEEELK~L~ 246 (271)
.+.+.++.|+.+++.++... +..|. -|. .|.||+.-|-+||+.+.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeF---AKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNY---AKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555565665555432 33344 444 47888888877777553
No 276
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=30.45 E-value=1.7e+02 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
++..++....+...+-|+.++.|+..+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444433
No 277
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=30.06 E-value=69 Score=22.94 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchh
Q psy9550 234 KLSEMEVELKELDQFKKENQRLKDENGALI 263 (271)
Q Consensus 234 KiSEmEEELK~L~~LRadNQRLKDENgALI 263 (271)
|+.|||. .|.+.+..+++|.|||.-|=
T Consensus 15 k~eeler---~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 15 KLEELER---DLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHH---HHHHHHHHHHhhhccCCchh
Confidence 3444554 34566788889999998773
No 278
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.04 E-value=1.8e+02 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSK 217 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk 217 (271)
+-.-.|..+|++++.|+++||-++|.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455677777777777777766654
No 279
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.94 E-value=17 Score=31.86 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhhcccccchhh
Q psy9550 242 LKELDQFKKENQRLKDENGALIR 264 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgALIR 264 (271)
|..+.+|+++|..|..||.-|.|
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666654
No 280
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=29.80 E-value=71 Score=21.44 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LE 216 (271)
.+.|..+++.++.+|.+++..|+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777665543
No 281
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=29.63 E-value=22 Score=24.68 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
+-..|+.+|.+||..|..|
T Consensus 59 ~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445566666666655544
No 282
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.58 E-value=51 Score=24.87 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy9550 232 ERKLSEMEVELK 243 (271)
Q Consensus 232 ERKiSEmEEELK 243 (271)
+-+|.++|.+|.
T Consensus 39 d~~I~eLEk~L~ 50 (72)
T 3nmd_A 39 DALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 283
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.47 E-value=3e+02 Score=25.89 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.4
Q ss_pred HHHHhhhhh
Q psy9550 247 QFKKENQRL 255 (271)
Q Consensus 247 ~LRadNQRL 255 (271)
+|+.+...|
T Consensus 105 ~l~~~l~~l 113 (365)
T 1gqe_A 105 ALEEKLAQL 113 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 284
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=29.34 E-value=62 Score=24.97 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELK 243 (271)
Q Consensus 231 LERKiSEmEEELK 243 (271)
|++++..++..|+
T Consensus 28 l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 28 LQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 285
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.84 E-value=80 Score=24.34 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy9550 234 KLSEMEVEL 242 (271)
Q Consensus 234 KiSEmEEEL 242 (271)
++.+|+.+|
T Consensus 24 ~~~~l~~~l 32 (182)
T 3kqg_A 24 KIRALQGSL 32 (182)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 286
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.39 E-value=33 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy9550 231 MERKLSEMEVELK 243 (271)
Q Consensus 231 LERKiSEmEEELK 243 (271)
||.+|.+||..|.
T Consensus 54 Le~ri~~Le~~l~ 66 (72)
T 2er8_A 54 IEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 287
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=28.36 E-value=23 Score=26.15 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9550 236 SEMEVELK 243 (271)
Q Consensus 236 SEmEEELK 243 (271)
.||..|.|
T Consensus 17 ~eLk~e~k 24 (61)
T 3l4f_A 17 QELRQDNK 24 (61)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 288
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=28.35 E-value=22 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhhhcccccch
Q psy9550 227 ERRTMERKLSEMEVELK---ELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 227 ERRaLERKiSEmEEELK---~L~~LRadNQRLKDENgAL 262 (271)
|-+.|+++|..||..-- ++..||.+--+||||=.++
T Consensus 25 eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 25 KHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444443211 4555555555555554433
No 289
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.09 E-value=59 Score=22.63 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q psy9550 237 EMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 237 EmEEELK~L~~LRadNQRLK 256 (271)
++|.=.++..+|+.++++|+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 290
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.83 E-value=1.6e+02 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
.++...+.+.++..|+.+...+.+++..-
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~ 66 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKH 66 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777666665443
No 291
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.81 E-value=54 Score=21.76 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 231 MERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 231 LERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
||.|+.|| |..-.+|+.|..|||+
T Consensus 5 LE~kVEeL---l~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEEL---LSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 45555444 3333455566666654
No 292
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.78 E-value=84 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy9550 201 LSKTEEELNQVKA 213 (271)
Q Consensus 201 L~e~~~El~qlk~ 213 (271)
+-+++.++.+++.
T Consensus 22 ~~~Lq~Ql~~Lq~ 34 (83)
T 2xdj_A 22 LTQLQQQLSDNQS 34 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555533
No 293
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=27.38 E-value=2.6e+02 Score=23.04 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRE 199 (271)
Q Consensus 185 kLYE~~k~ENErLk~ 199 (271)
+.|+..-.|.++++.
T Consensus 144 ~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 144 RRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 294
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.34 E-value=37 Score=24.57 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.7
Q ss_pred HHHHHHhhhhhcccc
Q psy9550 245 LDQFKKENQRLKDEN 259 (271)
Q Consensus 245 L~~LRadNQRLKDEN 259 (271)
++.|++++++|+.||
T Consensus 66 ~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 66 NHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 333444444444444
No 295
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.13 E-value=1e+02 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~ 246 (271)
|-..||+.+.||++|+..++
T Consensus 47 EV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44678889999999888765
No 296
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.98 E-value=2.3e+02 Score=24.12 Aligned_cols=19 Identities=0% Similarity=0.184 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
++..|++.|..|+++.+.+
T Consensus 71 ~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 71 TMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 297
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.85 E-value=1.1e+02 Score=23.24 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 206 EELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 206 ~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L 245 (271)
.++.++|.+|+.. ..|+..|+-.|..|++++..+
T Consensus 56 ~~i~~Lr~~i~~~------~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 56 EEMRELRRQVDQL------TNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655532 336666666666677666544
No 298
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.78 E-value=3.4e+02 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=16.0
Q ss_pred CCCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 177 ENGELDYKKL---YEESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 177 e~~~~DYKkL---YE~~k~ENErLk~~L~e~~~El~qlk 212 (271)
|++..-|+.= |+.+.+-..+-+.++..++..+++++
T Consensus 338 e~~Kki~naevae~~~lrQRlddArNEItsaeSaInslq 376 (602)
T 1cii_A 338 EGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSAR 376 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455532 44444444444444444444444333
No 299
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.73 E-value=60 Score=25.06 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~ 246 (271)
.+++.|.+++.++++|++.|.
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355556666666666666554
No 300
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=26.58 E-value=1.2e+02 Score=22.23 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVEL 242 (271)
Q Consensus 229 RaLERKiSEmEEEL 242 (271)
..++.++.+|+.-+
T Consensus 57 ~~i~~~~~~L~~~~ 70 (113)
T 1ud0_A 57 EEFEHQQKELEKVC 70 (113)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 301
>2f8x_M MAM-1, mastermind-like protein 1; notch, CSL, HES-1, ankyrin repeats, REL- homology region, transcription/DNA complex; 3.25A {Homo sapiens} PDB: 3nbn_C 3v79_M*
Probab=26.58 E-value=1.8e+02 Score=21.55 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHH
Q psy9550 192 AELSRLRETLSKTEEELNQVKATYSK--NSLSEQEKRERRTMERKLSE 237 (271)
Q Consensus 192 ~ENErLk~~L~e~~~El~qlk~~LEk--~SLlE~EkrERRaLERKiSE 237 (271)
+-.|||+..|+-..+--.+.....|+ +..+|.|..|--+|..|.-|
T Consensus 7 avvdRLRrRIE~~Rrhh~~C~~Rye~~~~~~~e~erq~T~~L~qr~le 54 (63)
T 2f8x_M 7 AVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALHQRCIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45688999998888887777777764 45778888888887776543
No 302
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.26 E-value=56 Score=23.59 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhhcccccc
Q psy9550 242 LKELDQFKKENQRLKDENGA 261 (271)
Q Consensus 242 LK~L~~LRadNQRLKDENgA 261 (271)
..-+..|+.++++|+.|+..
T Consensus 56 i~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 303
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=26.22 E-value=3e+02 Score=23.41 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hh--hcchhHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQVKAT-----YS--KNSLSEQEKRERRTMERKLS 236 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~qlk~~-----LE--k~SLlE~EkrERRaLERKiS 236 (271)
-.+++|++-+++.+++++..|+..-.+ |+ |-.-+|..-+|+..|-.-+-
T Consensus 63 ~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 63 GKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLT 118 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHH
Confidence 345666666677777776665533222 11 22233444566666665544
No 304
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=26.20 E-value=1.2e+02 Score=25.47 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy9550 184 KKLYEESQAE 193 (271)
Q Consensus 184 KkLYE~~k~E 193 (271)
++.|+...-+
T Consensus 171 Rk~f~~~~ld 180 (265)
T 2q12_A 171 RKKQHQTMMH 180 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 305
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.12 E-value=2.7e+02 Score=22.70 Aligned_cols=59 Identities=12% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--hh-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Q psy9550 194 LSRLRETLSKTEEELNQVKATYSKNS--LS-EQEKRERRTMERKLSE---MEVELKELDQFKKEN 252 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~LEk~S--Ll-E~EkrERRaLERKiSE---mEEELK~L~~LRadN 252 (271)
.++|+.+|...+.||..++..|+.+- .- +=...-+.+|++|-++ +|.-|.+|.+.=||-
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887776431 11 1112346778777555 677776666665553
No 306
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.02 E-value=82 Score=22.07 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q psy9550 197 LRETLSKTEEE 207 (271)
Q Consensus 197 Lk~~L~e~~~E 207 (271)
.|.+|++++.|
T Consensus 20 ~RkElqK~K~E 30 (45)
T 1use_A 20 VKKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 307
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=25.73 E-value=96 Score=27.53 Aligned_cols=14 Identities=7% Similarity=0.432 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q psy9550 183 YKKLYEESQAELSR 196 (271)
Q Consensus 183 YKkLYE~~k~ENEr 196 (271)
|-..|.++..||++
T Consensus 301 F~~~f~~a~~en~~ 314 (340)
T 1v9d_A 301 FRNMFLQAVKENQK 314 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 308
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=25.59 E-value=71 Score=23.43 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 195 SRLRETLSKTEEELNQVK 212 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk 212 (271)
+.|..+|.++..|+-++|
T Consensus 19 eEL~~~L~elk~ELf~LR 36 (72)
T 3v2d_2 19 VELEKLVREKKRELMELR 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 309
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.58 E-value=74 Score=21.78 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~ 247 (271)
...||+||.-||..|..|..
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45678888888876655543
No 310
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.36 E-value=69 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
.-..||.+|.+||..|..|
T Consensus 46 ~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456788888888777765
No 311
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=25.30 E-value=1.9e+02 Score=21.19 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9550 231 MERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 231 LERKiSEmEEELK~L~~LRad 251 (271)
||-.++|+|.|+.-|.+|=.+
T Consensus 30 Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 30 LEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888777776544
No 312
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.23 E-value=2.6e+02 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 228 RRTMERKLSEMEVELKELDQFKKEN 252 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~LRadN 252 (271)
+..|+++-+.-++..|.+.+|+.|+
T Consensus 52 ~~SL~kekaq~q~qq~~v~elqgEI 76 (99)
T 3ni0_A 52 QESLEKKVSQALEQQARIKELENEV 76 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 313
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.19 E-value=57 Score=28.17 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~L 215 (271)
-...|+.-....+..|+++++.++++...|+.+.
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888888777776665443
No 314
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=25.07 E-value=1.1e+02 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLRETLS 202 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~ 202 (271)
+|-..|.++.+||++++.+-+
T Consensus 383 ~F~~~f~~A~~en~~~~~~~e 403 (483)
T 2j1d_G 383 QFLQAVSEAKQENENMRKKKE 403 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888877665433
No 315
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.07 E-value=1.9e+02 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=5.7
Q ss_pred HHHhhhhhccc
Q psy9550 248 FKKENQRLKDE 258 (271)
Q Consensus 248 LRadNQRLKDE 258 (271)
|+++...|+++
T Consensus 49 L~~ev~~Lr~~ 59 (63)
T 2dgc_A 49 LENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 316
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.01 E-value=2.2e+02 Score=22.39 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 199 ETLSKTEEELNQVKATYSKN-SLSEQEKRERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 199 ~~L~e~~~El~qlk~~LEk~-SLlE~EkrERRaLERKiSEmEEELK~L~~ 247 (271)
.+.+.++.|+.+++.++... +..|.-|- -.|.||+..|-+||+.+.+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKW--aKL~Rk~DKl~~ele~l~~ 70 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKW--TKNNRKLDSLDKEINNLKD 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHH
No 317
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=24.96 E-value=3.9e+02 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
..++.+..+.+.|+..+.+++....++
T Consensus 335 ~Fl~~a~~~~~~L~~~~~~~~~~~~~l 361 (483)
T 2j1d_G 335 QFITVASFSFSDVEDLLAEAKDLFTKA 361 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665555544
No 318
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=24.87 E-value=95 Score=29.03 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 196 RLRETLSKTEEELNQVKATYSKN-SL--SEQEKRERRTMERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 196 rLk~~L~e~~~El~qlk~~LEk~-SL--lE~EkrERRaLERKiSEmEEELK~L~~LRadNQRLK 256 (271)
.|.+++++..++|-++.+.+|-. .. .++|...++.+.++|.+++++|+.+.+-....++++
T Consensus 168 ~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r 231 (476)
T 3gee_A 168 DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVS 231 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 34455555666666666666532 11 134445688899999999999998876555545554
No 319
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=24.81 E-value=27 Score=29.07 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHHHH
Q psy9550 226 RERRTMERKLSEM-EVELK-ELDQFK 249 (271)
Q Consensus 226 rERRaLERKiSEm-EEELK-~L~~LR 249 (271)
+.--|||.|.||| ++||. +++.|+
T Consensus 20 ~~~~~mekrySeMS~~EL~~EI~~L~ 45 (128)
T 1sf9_A 20 FQSNAMEKRYSQMTPHELNTEIALLS 45 (128)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eecchhhHHHHHcCHHHHHHHHHHHH
Confidence 4456778888887 33443 333443
No 320
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.72 E-value=1e+02 Score=28.86 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKE 244 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~ 244 (271)
++..|.+++..+++|++.
T Consensus 47 ~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 47 QRNALNDKVRFIKDELRL 64 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556666566665553
No 321
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.68 E-value=2.6e+02 Score=22.13 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhhccc
Q psy9550 230 TMERKLSEMEVELK-ELDQFKKENQRLKDE 258 (271)
Q Consensus 230 aLERKiSEmEEELK-~L~~LRadNQRLKDE 258 (271)
.++++|..+-.+.+ ...+++...++|+..
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~ 75 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQRD 75 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555544 334455555555443
No 322
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.68 E-value=3.2e+02 Score=27.05 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhhcc
Q psy9550 244 ELDQFKKENQRLKD 257 (271)
Q Consensus 244 ~L~~LRadNQRLKD 257 (271)
+|.+++.+.|||..
T Consensus 140 ~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 140 SIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66778888888853
No 323
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=24.58 E-value=2.6e+02 Score=24.59 Aligned_cols=24 Identities=4% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELKELDQF 248 (271)
Q Consensus 225 krERRaLERKiSEmEEELK~L~~L 248 (271)
..-+...+++|.-+++-|+.....
T Consensus 176 ~~ak~~~~~~I~rL~~AL~IA~aa 199 (280)
T 3b8m_A 176 IKMKNQLDANIQRLNYSLDIANAA 199 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667789999999999987764
No 324
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.42 E-value=1e+02 Score=24.05 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELK 243 (271)
Q Consensus 230 aLERKiSEmEEELK 243 (271)
+|..+|..||+||+
T Consensus 100 ~L~~~i~~Le~el~ 113 (117)
T 3kin_B 100 ALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 325
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=24.08 E-value=3.5e+02 Score=24.38 Aligned_cols=29 Identities=10% Similarity=0.454 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 221 SEQEKRERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 221 lE~EkrERRaLERKiSEmEEELK~L~~LR 249 (271)
+.+++-|.+.+||+|..+.-++=+|.++|
T Consensus 120 Lsf~kgd~~~ier~ln~~~pdw~~l~k~r 148 (302)
T 2y3a_B 120 LRAQASDNREIDKRMNSLKPDLMQLRKIR 148 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhhHHHhHHhhhccCChHHHHHhhcc
Confidence 35678889999999999998887777764
No 326
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=24.07 E-value=1.4e+02 Score=19.59 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVE 241 (271)
Q Consensus 227 ERRaLERKiSEmEEE 241 (271)
|...||..++.||-|
T Consensus 16 enyqleqevaqlehe 30 (33)
T 1fmh_A 16 ENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHh
Confidence 555566666655544
No 327
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.06 E-value=1.5e+02 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LR 249 (271)
..+..|+.+|.+|+..++.|+.+-
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 82 SQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999988888887764
No 328
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.98 E-value=2.2e+02 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9550 232 ERKLSEMEVELKELDQFKKENQRLK 256 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRadNQRLK 256 (271)
..++..++.+++.+.....+...|.
T Consensus 26 ~~q~~~l~~~~~e~~~~~~eL~~l~ 50 (117)
T 2zqm_A 26 VQQKQKVQLELTEAKKALDEIESLP 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444443
No 329
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=23.65 E-value=1.4e+02 Score=28.46 Aligned_cols=27 Identities=7% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 185 KLYEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 185 kLYE~~k~ENErLk~~L~e~~~El~ql 211 (271)
+.|+.++...+++..+++.+.++++++
T Consensus 37 ~f~~~~~~~~~~~~~~i~~~~~~~~~~ 63 (517)
T 3pzp_A 37 RFYGNELKKEKQVNQRIENMMQQKAQI 63 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777776666555443
No 330
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.53 E-value=2.5e+02 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~ 247 (271)
-||.-||.++..-+.||++|..
T Consensus 63 eEKYDlE~kv~kq~yEI~eL~~ 84 (106)
T 1j1d_B 63 AEKFDLQEKFKQQKYEINVLRN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHhhhHHHHHHHH
Confidence 3777788888777777776643
No 331
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.51 E-value=1.5e+02 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy9550 230 TMERKLSEMEVELKELDQFKKE 251 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~LRad 251 (271)
.|+.|+....|.-+.|+.||.|
T Consensus 66 ~LQDkL~qi~eAR~ALdaLR~e 87 (98)
T 3f1i_H 66 GLQDKLAQIRDARGALSALREE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 332
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.51 E-value=17 Score=33.70 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVELKEL 245 (271)
Q Consensus 229 RaLERKiSEmEEELK~L 245 (271)
+.|+.++.+||+..+.|
T Consensus 369 ~~l~~~~~~l~~~~~~~ 385 (418)
T 2qag_C 369 KNLEAQHKELEEKRRQF 385 (418)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 333
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=23.50 E-value=2.1e+02 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc
Q psy9550 185 KLYEESQAELSR-LRETLSKTEEELNQVKATYSKN 218 (271)
Q Consensus 185 kLYE~~k~ENEr-Lk~~L~e~~~El~qlk~~LEk~ 218 (271)
.||.+....|.. +.+.|++..++|.+++..|+..
T Consensus 260 ~~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~ 294 (314)
T 3ggo_A 260 IMWRDIFLENKENVMKAIEGFEKSLNHLKELIVRE 294 (314)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999988886 7999999999999998888754
No 334
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=23.44 E-value=33 Score=25.76 Aligned_cols=17 Identities=53% Similarity=0.661 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhcc
Q psy9550 241 ELKELDQFKKENQRLKD 257 (271)
Q Consensus 241 ELK~L~~LRadNQRLKD 257 (271)
=|++|..||-+.|||.+
T Consensus 9 vl~ELeRlkveiQRLE~ 25 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEA 25 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999999863
No 335
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=23.23 E-value=3.2e+02 Score=22.61 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhcc
Q psy9550 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVEL----KELDQFKKENQRLKD 257 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEEL----K~L~~LRadNQRLKD 257 (271)
+.++.......+.+++...++++..++..+|...++. .+|-..+..+....+... +.++++++.-++.+.
T Consensus 106 ~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~------~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~ 179 (301)
T 2efk_A 106 EMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERD------CREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSH 179 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHH
Q ss_pred c
Q psy9550 258 E 258 (271)
Q Consensus 258 E 258 (271)
+
T Consensus 180 ~ 180 (301)
T 2efk_A 180 M 180 (301)
T ss_dssp H
T ss_pred H
No 336
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.21 E-value=1.3e+02 Score=22.54 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhccc
Q psy9550 202 SKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKE--------LDQFKKENQRLKDE 258 (271)
Q Consensus 202 ~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~--------L~~LRadNQRLKDE 258 (271)
.+..+.|+-+|-.|+---=+|. |-.+.|+.|+-.|-||.. .+.||.|-.-++||
T Consensus 5 aefkqrlaaiktrlqalggsea---elaafekeiaafeselqaykgkgnpevealrkeaaairde 66 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEA---ELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDE 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGG---THHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 3445556666666653322333 445667778888777752 45566555555554
No 337
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=22.86 E-value=1.6e+02 Score=26.73 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 191 QAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 191 k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
-+|.-||-+++|+--+++..+|.+|.
T Consensus 97 greiarllekiqkyfQ~IEtlK~ql~ 122 (294)
T 3caz_A 97 GREIARLLEKIQKYRQEIEEIKKEYK 122 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777664
No 338
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=22.83 E-value=1e+02 Score=21.65 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhhh
Q psy9550 232 ERKLSEMEVELKELDQFKKENQRLKDENGALIRVI 266 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRadNQRLKDENgALIRVI 266 (271)
++.|-++|..+.+|.+|=.|..-|=.|-|.+|=.|
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~I 45 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 45 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666666666666666666655443
No 339
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.80 E-value=2.2e+02 Score=20.58 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 230 TMERKLSEMEVELKELDQF 248 (271)
Q Consensus 230 aLERKiSEmEEELK~L~~L 248 (271)
.++..+.|++.-+++|..|
T Consensus 26 ~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 26 TVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444333
No 340
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=22.75 E-value=2.7e+02 Score=21.50 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9550 220 LSEQEKRERRTMERKLSEMEVELKELDQFKKENQ 253 (271)
Q Consensus 220 LlE~EkrERRaLERKiSEmEEELK~L~~LRadNQ 253 (271)
+.|-++.-.+.++.+++++..+.+++...+.-.|
T Consensus 45 i~EkDk~R~~~Ik~~~~~L~q~a~~~rna~sslq 78 (79)
T 2fzt_A 45 ILEKDRKRLEIIEKRKTALFQEINVIREARSSLQ 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455556667788889999999998887776554
No 341
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.71 E-value=65 Score=22.98 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKEL 245 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L 245 (271)
.-..||.+|.+||..|..+
T Consensus 49 ~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566888888888877654
No 342
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.62 E-value=4e+02 Score=24.93 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 228 RRTMERKLSEMEVELKELDQ 247 (271)
Q Consensus 228 RRaLERKiSEmEEELK~L~~ 247 (271)
+...+..+.++++++..|+.
T Consensus 71 ~~~a~~e~~~l~~~~~~le~ 90 (354)
T 3d5a_X 71 KEMAKAEREALLARKEALEK 90 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666667766666653
No 343
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=22.34 E-value=77 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy9550 194 LSRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 194 NErLk~~L~e~~~El~qlk~~L 215 (271)
.|+|+.+|+.++.++..++..|
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776554
No 344
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.34 E-value=70 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~ql 211 (271)
..++..=...|+.+.++++.+..++
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 345
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.32 E-value=46 Score=26.98 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q psy9550 238 MEVELKELDQFKKENQRLK 256 (271)
Q Consensus 238 mEEELK~L~~LRadNQRLK 256 (271)
|||=.++|++|+.||-.||
T Consensus 10 ~EeLaaeL~kLqmENK~LK 28 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLK 28 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566777777776666
No 346
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.22 E-value=3.3e+02 Score=22.35 Aligned_cols=46 Identities=9% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHH
Q psy9550 195 SRLRETLSKTEEELNQVKATYSKNS-LSEQEKRERRTMERKLSEMEV 240 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk~~LEk~S-LlE~EkrERRaLERKiSEmEE 240 (271)
+.|+.++.+.+.+++.+..++.+.- ....|.....+|+.++..-+-
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkA 110 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKA 110 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 4566667777777777777776432 222222334555555543333
No 347
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=21.93 E-value=1e+02 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhh
Q psy9550 232 ERKLSEMEVELKELDQFKKENQRLKDENGALIRV 265 (271)
Q Consensus 232 ERKiSEmEEELK~L~~LRadNQRLKDENgALIRV 265 (271)
++.|-++|..+.+|.+|=.|..-|=.|-|.+|=.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~ 42 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDR 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555666666666655555555555443
No 348
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=21.92 E-value=3.1e+02 Score=21.91 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 222 EQEKRERRTMERKLSEMEV 240 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEE 240 (271)
+.|+--|-.||-|++-+|.
T Consensus 63 ~~EklAkldLE~RLsKtEK 81 (101)
T 1d7m_A 63 ELEKLARMELEARLAKTEK 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhh
Confidence 5666666677777777765
No 349
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.87 E-value=1.7e+02 Score=19.95 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 188 EESQAELSRLRETLSKTEEELNQ 210 (271)
Q Consensus 188 E~~k~ENErLk~~L~e~~~El~q 210 (271)
|+.+.+..+|+.+|+.++.|--|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 350
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.65 E-value=2.2e+02 Score=20.15 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9550 222 EQEKRERRTMERKLSEMEVELKELDQFKKENQR 254 (271)
Q Consensus 222 E~EkrERRaLERKiSEmEEELK~L~~LRadNQR 254 (271)
++=...+..++++|.+|+.-++.|..+.+.-+.
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333567888999999999999999988775543
No 351
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=21.65 E-value=3.4e+02 Score=22.87 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 225 KRERRTMERKLSEMEVELK 243 (271)
Q Consensus 225 krERRaLERKiSEmEEELK 243 (271)
..||..++..|.++++-|.
T Consensus 171 ~~~k~~i~~~l~~~~~~L~ 189 (219)
T 4e81_A 171 ADDKTAIESALTALETALK 189 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887775
No 352
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.55 E-value=2.3e+02 Score=20.39 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9550 193 ELSRLRETLSKTEEELNQV 211 (271)
Q Consensus 193 ENErLk~~L~e~~~El~ql 211 (271)
+.+.||.++++.+.+|.++
T Consensus 4 ~L~~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999988877
No 353
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=21.34 E-value=56 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~ 246 (271)
=|.++|=||-|||..--.+.
T Consensus 19 lr~~~elkmkeleyaegiit 38 (99)
T 3aei_A 19 LRQSLELKMKELEYAEGIIT 38 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665443333
No 354
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=21.07 E-value=1e+02 Score=29.82 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9550 187 YEESQAELSRLRETLSKTEEELNQVKATYS 216 (271)
Q Consensus 187 YE~~k~ENErLk~~L~e~~~El~qlk~~LE 216 (271)
|.++..+...|+.+|++++.++.+++.+|+
T Consensus 175 Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~ 204 (536)
T 3err_A 175 YADMLKRVEPLRNELQKLEDDAKDNQQKLE 204 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888877765
No 355
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.06 E-value=2.5e+02 Score=20.65 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Q psy9550 184 KKLYEESQAELSRLRE-----TLSKTEEELNQVKATYS 216 (271)
Q Consensus 184 KkLYE~~k~ENErLk~-----~L~e~~~El~qlk~~LE 216 (271)
|+|-|+.++--|+.+. +++++...-.+++..+|
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkkie 42 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIE 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 4555555555554442 34444444444444443
No 356
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.88 E-value=1.1e+02 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9550 229 RTMERKLSEMEVELKELDQFKKENQRLKD 257 (271)
Q Consensus 229 RaLERKiSEmEEELK~L~~LRadNQRLKD 257 (271)
+.|+.++.+++++++.|+.++...+.+-+
T Consensus 93 ~ll~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 93 QLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666655543
No 357
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.86 E-value=1.2e+02 Score=22.38 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 226 RERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 226 rERRaLERKiSEmEEELK~L~~LR 249 (271)
..+..|+.+|.+|+..++.|+.+-
T Consensus 81 ~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 81 RQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999888888764
No 358
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.82 E-value=1.1e+02 Score=26.51 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccch
Q psy9550 227 ERRTMERKLSEMEVELKELDQFKKENQRLKDENGAL 262 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LRadNQRLKDENgAL 262 (271)
--..|..|+.+||++|..|-+.=.+|+++-+.--.|
T Consensus 73 Q~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 73 QVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888887765554444
No 359
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.71 E-value=92 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9550 195 SRLRETLSKTEEELNQVKATY 215 (271)
Q Consensus 195 ErLk~~L~e~~~El~qlk~~L 215 (271)
+.|..+|.++..|+-+++.+.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~ 32 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777766665443
No 360
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.70 E-value=3.1e+02 Score=21.50 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 227 ERRTMERKLSEMEVELKELDQFK 249 (271)
Q Consensus 227 ERRaLERKiSEmEEELK~L~~LR 249 (271)
|-.+|+++|.-||.-.+.+..||
T Consensus 55 EI~~L~~eI~~LE~iqs~aK~LR 77 (96)
T 1t3j_A 55 EIARLSKEIDQLEKMQNNSKLLR 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 44445555555554444444444
No 361
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=20.61 E-value=2.2e+02 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=13.4
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy9550 220 LSEQEKRER-RTMERKLSEMEVELKELDQFKK 250 (271)
Q Consensus 220 LlE~EkrER-RaLERKiSEmEEELK~L~~LRa 250 (271)
|.+.+|..| .++++++.+|+..++.|+...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (310)
T 3n5l_A 275 LGAEEKAAKLKALDEELAKLEKRMAEREQKTA 306 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444332 2344444444444444444333
No 362
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.60 E-value=88 Score=36.06 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 182 DYKKLYEESQAELSRLR-------ETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELD 246 (271)
Q Consensus 182 DYKkLYE~~k~ENErLk-------~~L~e~~~El~qlk~~LEk~SLlE~EkrERRaLERKiSEmEEELK~L~ 246 (271)
.|+++|++.+++.+..+ .+|++++.++++++.+|+..-+..+ .-|+.--+..+.+++++++.|.
T Consensus 1854 ~~~~~~~~k~~~l~~~~~~l~~~l~kL~e~~~~v~~l~~~l~~~Li~~L-~~E~~RW~~~~~~~~~~~~~l~ 1924 (2695)
T 4akg_A 1854 ALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSL-TFEKERWLNTTKQFSKTSQELI 1924 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CTT-HHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhcch
No 363
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.45 E-value=2.3e+02 Score=20.00 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy9550 229 RTMERKLSEMEVELK 243 (271)
Q Consensus 229 RaLERKiSEmEEELK 243 (271)
+.||+-|+.|.+|+.
T Consensus 27 qnlekiianlrdeia 41 (52)
T 3he5_B 27 QNLEKIIANLRDEIA 41 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 345544554444443
No 364
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.21 E-value=2e+02 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhc-chhHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy9550 201 LSKTEEELNQVKATYSKN-SLSEQEKRERR-TMERKLSEMEVELKEL 245 (271)
Q Consensus 201 L~e~~~El~qlk~~LEk~-SLlE~EkrERR-aLERKiSEmEEELK~L 245 (271)
.+.++.|+.+++.++... +..|. -|. .|.||+..|-+||+.+
T Consensus 32 ~~~lk~E~~~lk~E~~stSaQDEF---AKWAKL~Rk~DKl~~ele~l 75 (94)
T 3vlc_E 32 YLAKVKERHELKEFNNSISAQDNY---AKWTKNNRKLDSLDKEINNL 75 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCH---HHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444322 23333 443 3788887777777655
No 365
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.15 E-value=4.2e+02 Score=22.80 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHHH
Q psy9550 203 KTEEELNQVKATYSKNSLS-EQEKRERRTMERKLSE 237 (271)
Q Consensus 203 e~~~El~qlk~~LEk~SLl-E~EkrERRaLERKiSE 237 (271)
.++.++.+++.+++|-.+. +++..|.+.++....|
T Consensus 110 ~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEE 145 (169)
T 3k29_A 110 RAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEE 145 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443222 3334444444444443
No 366
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.05 E-value=1.2e+02 Score=23.27 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9550 189 ESQAELSRLRETLSKTEEELNQVK 212 (271)
Q Consensus 189 ~~k~ENErLk~~L~e~~~El~qlk 212 (271)
+.+.+...|++++.+.++|+..++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666654
Done!