RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9550
(271 letters)
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 40.1 bits (93), Expect = 2e-04
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 184 KKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELK 243
K+ E Q + ++ E ++ +E + +N + K + RT+ KL E E LK
Sbjct: 220 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 279
Query: 244 ELDQFKKENQRLKDE 258
E F+KE++ +K+E
Sbjct: 280 E--GFQKESRIMKNE 292
Score = 34.3 bits (78), Expect = 0.010
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 188 EESQAELSRLRETLSKTEEELNQVKATY--SKNSLSEQEKRERRTMERKLSEMEVELKEL 245
E + + + + E + + + S E K+ ME ++ E +
Sbjct: 207 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 266
Query: 246 ------DQFKKENQRLKDENGALIRVISKLSK 271
+Q + + + E+ + I L
Sbjct: 267 LALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 25.9 bits (56), Expect = 6.0
Identities = 6/65 (9%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 180 ELDYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEME 239
E + E + ++ + +E + A + ++ ++ +E++
Sbjct: 235 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
Query: 240 VELKE 244
+L+
Sbjct: 295 -DLQT 298
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar
phosphotransferase system HPr-binding (sub)domain
{Escherichia coli [TaxId: 562]}
Length = 123
Score = 31.4 bits (71), Expect = 0.034
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 180 ELDYKKLYEES-QAELSRLRETLSKTEEELNQVKATYSKNSLSEQE 224
+D KK+ + E+ R +K +L +K + + E++
Sbjct: 4 VIDRKKISADQVDQEVERFLSGRAKASAQLETIKTK-AGETFGEEK 48
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 30.5 bits (69), Expect = 0.062
Identities = 9/91 (9%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRT-----MERKLSEMEVE 241
+++ Q + + E ++N+ + + S + + ++ + E+ E
Sbjct: 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEE 69
Query: 242 LKE-LDQFKKENQRLKDENGALIRVISKLSK 271
L+E L+ + + ++ + +++ + ++
Sbjct: 70 LQEKLETLQLREKTIERQEERVMKKLQEMQV 100
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 29.3 bits (66), Expect = 0.071
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMER-KLSEMEVELKELDQ 247
+ R + L + + + + E+ +E E +L E + + + +
Sbjct: 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIRE 60
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 28.7 bits (64), Expect = 0.20
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 223 QEKRERRTMERKLSEMEVELKELDQFKKENQRLKDEN 259
+ S E +++ Q KKEN +
Sbjct: 46 KYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRART 82
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.5 bits (66), Expect = 0.24
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 191 QAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKELDQFKK 250
+AEL + + E E+ Q + N + +++ + ME E L + + +
Sbjct: 62 EAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ 121
Query: 251 ENQRLKDE 258
E + +E
Sbjct: 122 EKDKHAEE 129
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 29.1 bits (65), Expect = 0.25
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 188 EESQAELSRLRETLSKT--EEELNQVKATYSKNSLSEQEKRERRTMERKLS 236
++ + + + E ++ A + LS +E+ E T+ ++L+
Sbjct: 83 NIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELA 133
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 27.8 bits (62), Expect = 0.35
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 187 YEESQAELSRLRETLSKTEEELNQVKAT--YSKNSLSEQEKRERRTMERKLSEMEVELK 243
YE +L R RE L + + L ++ + +S E K+E+ +E ++ +E L
Sbjct: 10 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS 68
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 29.7 bits (66), Expect = 0.43
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 182 DYKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVE 241
+ + E+ +LSR +S E+ ++ L + + RR +E+ + +
Sbjct: 81 EVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRN 140
Query: 242 LKELDQFKKENQRLKDENGALIRVISKLSK 271
L + + +K + + +K
Sbjct: 141 GLHLSEHIR--NEIKSMKKRMSELCIDFNK 168
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.0 bits (64), Expect = 0.66
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 165 SESGGSSRKLPNENGELDYKKLYEESQAELS-RLRETLSKTEEELNQVKATYSKNSLSEQ 223
E S EN ++LY + L R+ S T+E ++ Q
Sbjct: 670 DEEDEESSHEDTENVINGPEELYGTYEYLLGMRIW---SLTKERYQKLLKQK-------Q 719
Query: 224 EKRERRTMERKLSEMEVELKELDQFKKENQRLKDE 258
EK KLS ++ +L F+ Q
Sbjct: 720 EKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 754
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
coli [TaxId: 562]}
Length = 94
Score = 26.4 bits (58), Expect = 1.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 228 RRTMERKLSEMEVELKELDQFKKENQRLKDE 258
+ ++ +L E+E + EL ++ QRL D
Sbjct: 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDA 71
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 27.6 bits (61), Expect = 1.7
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 189 ESQAELSRL---RETLSKTEEELNQVKATYSKNSLSEQEKRERRTMERKLSEMEVELKEL 245
+Q ELS L + + + K +L+E E+ R ++R + +
Sbjct: 46 VAQGELSVLSHELLLHPEFVNLVEKAK---GLENLNEYERGIVRVLDR---SIRIARAFP 99
Query: 246 DQFKKENQRLKDENGALIR 264
+F +E
Sbjct: 100 PEFIREVSETTSLATKAWE 118
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 25.4 bits (56), Expect = 2.6
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 183 YKKLYEESQAELSRLRETLSKTEEELNQVKATYSKNSLSE-----QEKRERRTMERKLSE 237
+KL + EL L+ + E + + L E + ++ E ++ +
Sbjct: 10 AEKL----REELDFLKSV--RRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKD 63
Query: 238 MEVELK 243
+E +L
Sbjct: 64 IEAKLS 69
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 25.8 bits (56), Expect = 6.1
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 188 EESQAELSRLRETLSKTEEELNQV----KATYSKNSLSEQEKRERRTMERKLSEMEVELK 243
+ L E E+ + + +LS ++K R L+ ++ +L
Sbjct: 115 ALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAAR------LAALDAQLT 168
Query: 244 ELDQFKKENQRLKDE 258
++ ++ + +
Sbjct: 169 PDERAQQAALHAQQD 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.300 0.118 0.312
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 863,978
Number of extensions: 37563
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 31
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 52 (24.1 bits)