Query psy9551
Match_columns 250
No_of_seqs 40 out of 42
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 22:27:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0505|consensus 76.4 1.9 4.1E-05 43.5 2.5 50 195-244 311-366 (527)
2 KOG0505|consensus 38.3 15 0.00032 37.4 1.0 44 36-82 311-354 (527)
3 PF13544 N_methyl_2: Type IV p 20.9 44 0.00094 21.5 0.6 22 61-82 4-25 (31)
4 PRK12277 50S ribosomal protein 15.9 80 0.0017 25.4 1.1 14 68-81 29-42 (83)
5 COG5513 Predicted secreted pro 10.3 1.3E+02 0.0027 25.4 0.8 21 140-160 41-61 (113)
6 PF08310 LGFP: LGFP repeat; I 9.4 1.4E+02 0.0031 20.6 0.7 10 11-20 25-34 (54)
7 COG4451 RbcS Ribulose bisphosp 7.6 2.7E+02 0.006 23.9 1.8 29 30-58 2-30 (127)
8 PF10913 DUF2706: Protein of u 6.9 2.3E+02 0.005 21.6 0.9 12 123-134 19-30 (60)
9 PF08910 Aida_N: Aida N-termin 6.9 4.5E+02 0.0098 21.8 2.6 30 58-87 64-93 (106)
10 PTZ00192 60S ribosomal protein 6.8 2.4E+02 0.0053 26.1 1.2 14 68-81 75-88 (218)
No 1
>KOG0505|consensus
Probab=76.43 E-value=1.9 Score=43.50 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=40.5
Q ss_pred cchhhhhhhcchhhhHHhHHHHHh----hcCCC--CcCCCceeeeccccccCCCCc
Q psy9551 195 DSDKEQDKENDSRNAQATQAVIQR----RKRPK--RRSTGVVHVDLDEILDRGGEN 244 (250)
Q Consensus 195 eedKeedkE~d~~~aqat~avIqR----RRRPK--RRsTGVv~~dmdd~d~e~ge~ 244 (250)
.+|+.+-.+.+++....-.++|++ ||+|| ++++|+.||..|+..+++.++
T Consensus 311 ~~~~r~t~~a~~~~~~srr~S~~~~~~~~R~~~e~~~~~~~~~~~~d~~~~~~~~~ 366 (527)
T KOG0505|consen 311 SSDRRRTLSAGVRDKASRRASLSQRTDSRRKPKEREATTWQQFATKDDSEPEASGD 366 (527)
T ss_pred hhhhhccccCCcchhHHHHHhhhhhhhhhhccccCCcccccccccccCCCCCcccc
Confidence 566777777777777666788887 89999 899999999999999877544
No 2
>KOG0505|consensus
Probab=38.32 E-value=15 Score=37.38 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=37.9
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHHHhhcccCCcchHHHHHHH
Q psy9551 36 DSEGEKSFVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAE 82 (250)
Q Consensus 36 ~~~~rrs~~~pvrdeesesqrkarsr~~rqtrrstQgVtl~dl~~ae 82 (250)
..++||.+.+++||.. ++|+..+. ++++||+++|+..+..+++.
T Consensus 311 ~~~~r~t~~a~~~~~~--srr~S~~~-~~~~~R~~~e~~~~~~~~~~ 354 (527)
T KOG0505|consen 311 SSDRRRTLSAGVRDKA--SRRASLSQ-RTDSRRKPKEREATTWQQFA 354 (527)
T ss_pred hhhhhccccCCcchhH--HHHHhhhh-hhhhhhccccCCcccccccc
Confidence 3577999999999987 78888888 99999999999988877654
No 3
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.90 E-value=44 Score=21.51 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=5.7
Q ss_pred HHHHHhhcccCCcchHHHHHHH
Q psy9551 61 KRVRETRRSTQGVTLEELKSAE 82 (250)
Q Consensus 61 r~~rqtrrstQgVtl~dl~~ae 82 (250)
+..+..++..+|.||-|+-=|-
T Consensus 4 ~~~~~~~~~~~GFTLiEllVa~ 25 (31)
T PF13544_consen 4 RRRRRRRRRQRGFTLIELLVAM 25 (31)
T ss_dssp --------------HHHHHHHH
T ss_pred ccccccccccCCccHHHHHHHH
Confidence 4455667777899999886553
No 4
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=15.87 E-value=80 Score=25.36 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=12.3
Q ss_pred cccCCcchHHHHHH
Q psy9551 68 RSTQGVTLEELKSA 81 (250)
Q Consensus 68 rstQgVtl~dl~~a 81 (250)
|-..|+||+||+.|
T Consensus 29 R~GRGFsl~ELkaa 42 (83)
T PRK12277 29 RIGRGFSIGELEAA 42 (83)
T ss_pred eecCCcCHHHHHHc
Confidence 56789999999988
No 5
>COG5513 Predicted secreted protein [Function unknown]
Probab=10.34 E-value=1.3e+02 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.7
Q ss_pred CCccceecCCceeeeccCCCC
Q psy9551 140 PSWRLRVDNGVKFMLEDARDN 160 (250)
Q Consensus 140 psWrl~vDn~skf~lEDA~~~ 160 (250)
=+|.|.+++|.+++.+|---.
T Consensus 41 ysWeL~~s~gl~l~~~d~~~~ 61 (113)
T COG5513 41 YSWELNTSEGLVLLREDYTVD 61 (113)
T ss_pred eEEEEecCCccEEEeccCccC
Confidence 479999999999999876554
No 6
>PF08310 LGFP: LGFP repeat; InterPro: IPR013207 This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from Corynebacterium glutamicum (Brevibacterium flavum) and Corynebacterium efficiens along with PS1 protein contain this repeat region. The N-terminal region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminal region consists of 4 tandem LGFP repeats. It is hypothesised that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity. Deletion of Q01377 from SWISSPROT protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding involvement of the protein in the cell shape formation []. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix.
Probab=9.39 E-value=1.4e+02 Score=20.58 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=8.4
Q ss_pred ceecccCCCC
Q psy9551 11 EIFWKPASGL 20 (250)
Q Consensus 11 ~~~~~~~~~~ 20 (250)
.|||.|+.|-
T Consensus 25 ~Iywsp~tGa 34 (54)
T PF08310_consen 25 TIYWSPATGA 34 (54)
T ss_pred EEEEeCCCCc
Confidence 5999999874
No 7
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=7.61 E-value=2.7e+02 Score=23.94 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=22.7
Q ss_pred ccccccccccccccCCCCCchhhHHHHHH
Q psy9551 30 ITLKKEDSEGEKSFVPPVRDEESETQRKA 58 (250)
Q Consensus 30 ~t~~~~~~~~rrs~~~pvrdeesesqrka 58 (250)
+++|.+.+..--+|++|.-|++...|=.+
T Consensus 2 ~~~P~~~~~~~~s~lp~Ltd~qi~~QVry 30 (127)
T COG4451 2 IILPKNSRYKTLSSLPPLTDEQIAEQVRY 30 (127)
T ss_pred cccCCCCcccceecCCcCcHHHHHHHHHH
Confidence 46777777777899999999888777543
No 8
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=6.88 E-value=2.3e+02 Score=21.57 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=9.7
Q ss_pred cccCCCCCcccC
Q psy9551 123 TITPSPSPTINN 134 (250)
Q Consensus 123 Tit~a~~~~i~n 134 (250)
.|||++||+|+.
T Consensus 19 sctpsapyeiks 30 (60)
T PF10913_consen 19 SCTPSAPYEIKS 30 (60)
T ss_pred cCCCCCCccccC
Confidence 589999999853
No 9
>PF08910 Aida_N: Aida N-terminus; InterPro: IPR015006 This entry represents the axin interactor, dorsalization-associated protein family AIDA [].; PDB: 1UG7_A.
Probab=6.85 E-value=4.5e+02 Score=21.81 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcccCCcchHHHHHHHHHHHH
Q psy9551 58 AHAKRVRETRRSTQGVTLEELKSAEQLVKK 87 (250)
Q Consensus 58 arsr~~rqtrrstQgVtl~dl~~ae~~~~~ 87 (250)
.||+-.+.++-+.-|++|+||+.-+-.++.
T Consensus 64 lRs~~Lq~~t~~~~~i~ledlk~l~~~lk~ 93 (106)
T PF08910_consen 64 LRSKALQSLTGSQEGITLEDLKKLEPILKN 93 (106)
T ss_dssp HHHHHHH---S---S--SHHHHTHHHHHHT
T ss_pred HHHHHHHhhhccccccCHHHHHHHHHHHHH
Confidence 355555555566669999999998887764
No 10
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=6.84 E-value=2.4e+02 Score=26.06 Aligned_cols=14 Identities=50% Similarity=0.703 Sum_probs=12.2
Q ss_pred cccCCcchHHHHHH
Q psy9551 68 RSTQGVTLEELKSA 81 (250)
Q Consensus 68 rstQgVtl~dl~~a 81 (250)
|-..|+||+||+.|
T Consensus 75 R~GRGFtl~ELk~a 88 (218)
T PTZ00192 75 RLGRGFSLAELKAA 88 (218)
T ss_pred eccCCcCHHHHHHc
Confidence 46679999999988
Done!