Query psy9551
Match_columns 250
No_of_seqs 40 out of 42
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 22:28:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kjy_A Protein phosphatase 1 r 99.9 4.7E-26 1.6E-30 166.2 0.2 53 35-87 7-59 (60)
2 3v4y_B Nuclear inhibitor of pr 24.3 26 0.00089 25.7 1.1 25 216-241 35-60 (62)
3 3ukx_C Bimax2 peptide; arm rep 22.4 34 0.0012 21.6 1.2 19 217-239 3-21 (28)
4 3ukw_C Bimax1 peptide; arm rep 16.5 54 0.0019 20.7 1.2 20 218-240 3-22 (28)
5 3m1f_V VOPL, putative uncharac 12.2 72 0.0025 20.7 0.9 15 58-75 5-19 (31)
6 4a18_U RPL13, 60S ribosomal pr 7.1 1.7E+02 0.0058 25.5 1.6 15 68-82 68-82 (206)
7 3u5e_L 60S ribosomal protein L 6.4 1.6E+02 0.0054 25.7 1.0 14 68-81 70-83 (199)
8 2jtd_A Myomesin-1, skelemin; i 6.4 2.4E+02 0.0081 23.5 2.0 20 224-243 90-109 (142)
9 2wsc_H Photosystem I reaction 5.9 1.4E+02 0.0047 24.9 0.3 31 210-240 24-66 (144)
10 1wvh_A Tensin, tensin1; beta s 5.8 75 0.0026 25.6 -1.3 10 69-78 47-56 (134)
No 1
>2kjy_A Protein phosphatase 1 regulatory subunit 12A; MYPT1, phosphorylation, myosin phosphatase, alternative splicing, ANK repeat, cytoplasm; NMR {Homo sapiens}
Probab=99.91 E-value=4.7e-26 Score=166.24 Aligned_cols=53 Identities=53% Similarity=0.816 Sum_probs=50.1
Q ss_pred cccccccccCCCCCchhhHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Q psy9551 35 EDSEGEKSFVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQLVKK 87 (250)
Q Consensus 35 ~~~~~rrs~~~pvrdeesesqrkarsr~~rqtrrstQgVtl~dl~~ae~~~~~ 87 (250)
+.++.|||||+||||||+|+|||||||+|||+|||||||||+||++|||++++
T Consensus 7 ~~~~~~rs~~~PvrdeEsE~qRkarsR~~RqtRRSTQGVTl~dl~eAek~~~k 59 (60)
T 2kjy_A 7 EVRERRRSYLTPVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEKTIGR 59 (60)
T ss_dssp HHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHCCC
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHhcC
Confidence 45688999999999999999999999999999999999999999999999865
No 2
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens}
Probab=24.31 E-value=26 Score=25.74 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=11.6
Q ss_pred HHhhcCCCCcCCCceeeeccccc-cCC
Q psy9551 216 IQRRKRPKRRSTGVVHVDLDEIL-DRG 241 (250)
Q Consensus 216 IqRRRRPKRRsTGVv~~dmdd~d-~e~ 241 (250)
||+. +.||+.-+|.|.|.|+|- ||+
T Consensus 35 ~~~~-kRKRk~~~V~F~eeeeIINPED 60 (62)
T 3v4y_B 35 IQRP-KRKRKNSRVTFSEDDEIINPED 60 (62)
T ss_dssp -----------CCCEECSCCEESCCCC
T ss_pred cccc-ccccccCccccCCcccccCccc
Confidence 4444 346666689999988765 654
No 3
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=22.42 E-value=34 Score=21.60 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=7.8
Q ss_pred HhhcCCCCcCCCceeeecccccc
Q psy9551 217 QRRKRPKRRSTGVVHVDLDEILD 239 (250)
Q Consensus 217 qRRRRPKRRsTGVv~~dmdd~d~ 239 (250)
+||||.||.- -||-||+-|
T Consensus 3 rrrrrrkrkr----ewdddddpp 21 (28)
T 3ukx_C 3 RRRRRRKRKR----EWDDDDDPP 21 (28)
T ss_dssp ---CCCCCCC----CCCCSSSCC
T ss_pred hhHHHHHhhc----ccccCCCch
Confidence 4566666532 466544433
No 4
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=16.55 E-value=54 Score=20.68 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=8.7
Q ss_pred hhcCCCCcCCCceeeeccccccC
Q psy9551 218 RRKRPKRRSTGVVHVDLDEILDR 240 (250)
Q Consensus 218 RRRRPKRRsTGVv~~dmdd~d~e 240 (250)
|||||..|- .-||.|+.-|+
T Consensus 3 rrrrprkrp---lewdedeeppr 22 (28)
T 3ukw_C 3 RRRRPRKRP---LEWDEDEEPPR 22 (28)
T ss_dssp ----CCCCC---CCCCGGGSCCS
T ss_pred cccccccCC---cccccccCcch
Confidence 566676553 35666554443
No 5
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=12.20 E-value=72 Score=20.67 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=11.6
Q ss_pred HHHHHHHHhhcccCCcch
Q psy9551 58 AHAKRVRETRRSTQGVTL 75 (250)
Q Consensus 58 arsr~~rqtrrstQgVtl 75 (250)
-||++|-|-| |||.|
T Consensus 5 drSKLMEqIR---qGVkL 19 (31)
T 3m1f_V 5 DHSKLMEQIR---QGVKL 19 (31)
T ss_dssp THHHHHHHHH---HCCCC
T ss_pred hHHHHHHHHH---hhhcc
Confidence 3788888887 78876
No 6
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U
Probab=7.07 E-value=1.7e+02 Score=25.54 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=12.6
Q ss_pred cccCCcchHHHHHHH
Q psy9551 68 RSTQGVTLEELKSAE 82 (250)
Q Consensus 68 rstQgVtl~dl~~ae 82 (250)
|-..|+||+||+.|-
T Consensus 68 R~GRGFsl~Elk~aG 82 (206)
T 4a18_U 68 KLGRGFTLQELKAAG 82 (206)
T ss_dssp EECSSBCHHHHHHHT
T ss_pred cCCCCcCHHHHHHcC
Confidence 557899999999983
No 7
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=6.42 E-value=1.6e+02 Score=25.66 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=12.4
Q ss_pred cccCCcchHHHHHH
Q psy9551 68 RSTQGVTLEELKSA 81 (250)
Q Consensus 68 rstQgVtl~dl~~a 81 (250)
|-..|+||+||+.|
T Consensus 70 R~GRGFsl~ELk~a 83 (199)
T 3u5e_L 70 RAGRGFTLAEVKAA 83 (199)
T ss_dssp EECSCCCHHHHHHT
T ss_pred cCCCCcCHHHHHHc
Confidence 56789999999988
No 8
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=6.36 E-value=2.4e+02 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=16.9
Q ss_pred CcCCCceeeeccccccCCCC
Q psy9551 224 RRSTGVVHVDLDEILDRGGE 243 (250)
Q Consensus 224 RRsTGVv~~dmdd~d~e~ge 243 (250)
=|+|||+-+=||.+.+++++
T Consensus 90 D~~tGiIEmime~~~~edeG 109 (142)
T 2jtd_A 90 DRNTGIIEMFMEKLQDEDEG 109 (142)
T ss_dssp CSSSCCEEEEECCCCTTTCC
T ss_pred cccCChhhhhHhhcccccCc
Confidence 68999999999999876654
No 9
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=5.89 E-value=1.4e+02 Score=24.95 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=6.3
Q ss_pred HHhHHHHHhhc---CCC-CcCCCc--------eeeeccccccC
Q psy9551 210 QATQAVIQRRK---RPK-RRSTGV--------VHVDLDEILDR 240 (250)
Q Consensus 210 qat~avIqRRR---RPK-RRsTGV--------v~~dmdd~d~e 240 (250)
..+.+.|+..| |++ .|...| ||+|++|++-.
T Consensus 24 ~G~Kl~vkps~~~~~~~~~Ra~~v~AKYGdkSvYFDL~Di~nT 66 (144)
T 2wsc_H 24 AGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANT 66 (144)
T ss_dssp -----------------------------------CCSCCCCS
T ss_pred ccceEeecccccccccccccccceeeccCcceEEEEhhhcccc
Confidence 34455555444 444 565555 79999999743
No 10
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=5.78 E-value=75 Score=25.64 Aligned_cols=10 Identities=50% Similarity=0.710 Sum_probs=8.9
Q ss_pred ccCCcchHHH
Q psy9551 69 STQGVTLEEL 78 (250)
Q Consensus 69 stQgVtl~dl 78 (250)
|.|||||+|.
T Consensus 47 S~qGItLtD~ 56 (134)
T 1wvh_A 47 SAQGITLTDN 56 (134)
T ss_dssp ETTEEEEEES
T ss_pred EcCCCeEEcc
Confidence 6799999997
Done!