Query psy9551
Match_columns 250
No_of_seqs 40 out of 42
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 22:28:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9551.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9551hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g97a2 c.68.1.5 (A:2-251) N-a 20.0 29 0.0021 24.4 2.5 20 70-89 222-242 (250)
2 d2oi6a2 c.68.1.5 (A:4-251) N-a 16.1 40 0.0029 23.8 2.5 19 71-89 221-240 (248)
3 d1s4va_ d.3.1.1 (A:) Vignain ( 12.3 37 0.0027 24.4 1.4 21 31-51 1-21 (224)
4 d1j4aa2 c.23.12.1 (A:2-103,A:3 10.6 23 0.0017 25.3 -0.3 25 213-237 59-88 (134)
5 d2prva1 d.369.1.1 (A:1-152) Un 9.8 64 0.0047 22.4 1.9 26 63-88 13-38 (152)
6 d1fh0a_ d.3.1.1 (A:) (Pro)cath 9.5 49 0.0036 23.6 1.2 13 39-51 8-20 (221)
7 d1khqa_ d.3.1.1 (A:) Papain {P 9.0 56 0.0041 23.1 1.3 13 39-51 8-20 (212)
8 d1dxya2 c.23.12.1 (A:1-100,A:3 8.8 29 0.0021 24.2 -0.3 28 211-238 56-88 (131)
9 d1cqda_ d.3.1.1 (A:) Proline-s 8.8 58 0.0042 23.2 1.3 13 39-51 8-20 (216)
10 d1vica_ c.68.1.13 (A:) CMP:2-k 8.2 79 0.0058 22.6 1.9 16 74-89 239-254 (255)
No 1
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.03 E-value=29 Score=24.37 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=16.2
Q ss_pred cCCc-chHHHHHHHHHHHHHh
Q psy9551 70 TQGV-TLEELKSAEQLVKKKQ 89 (250)
Q Consensus 70 tQgV-tl~dl~~ae~~~~~~~ 89 (250)
.-|| |..||+.||+.+++.-
T Consensus 222 ~~gInt~~dL~~ae~~~~~~~ 242 (250)
T d1g97a2 222 SLGVNDRVALATAESVMRRRI 242 (250)
T ss_dssp GCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 3567 8999999999998653
No 2
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.14 E-value=40 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.3
Q ss_pred CCc-chHHHHHHHHHHHHHh
Q psy9551 71 QGV-TLEELKSAEQLVKKKQ 89 (250)
Q Consensus 71 QgV-tl~dl~~ae~~~~~~~ 89 (250)
-|| |.+||..||+.+.+..
T Consensus 221 ~gI~t~eDL~~ae~i~~~~~ 240 (248)
T d2oi6a2 221 EGVNNRLQLSRLERVYQSEQ 240 (248)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 477 7999999999886543
No 3
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}
Probab=12.27 E-value=37 Score=24.45 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=13.9
Q ss_pred cccccccccccccCCCCCchh
Q psy9551 31 TLKKEDSEGEKSFVPPVRDEE 51 (250)
Q Consensus 31 t~~~~~~~~rrs~~~pvrdee 51 (250)
|||...--+.+.|++||+|.-
T Consensus 1 ~lP~~~Dwr~~~~itpV~dQG 21 (224)
T d1s4va_ 1 TVPASVDWRKKGAVTSVKDQG 21 (224)
T ss_dssp CCCSCEETTTTTCCCCCCBCC
T ss_pred CCCCceeCCCCCCCCCCccCC
Confidence 455544444457999999864
No 4
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}
Probab=10.65 E-value=23 Score=25.31 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHhhcC--CC---CcCCCceeeecccc
Q psy9551 213 QAVIQRRKR--PK---RRSTGVVHVDLDEI 237 (250)
Q Consensus 213 ~avIqRRRR--PK---RRsTGVv~~dmdd~ 237 (250)
..+|+.=.. -| ++|+|+.|+|++-.
T Consensus 59 ~eil~~l~~~~LK~I~~~~vG~d~ID~~aa 88 (134)
T d1j4aa2 59 AETLQALADNGITKMSLRNVGVDNIDMAKA 88 (134)
T ss_dssp HHHHHHHHHTTCCEEEESSSCCTTBCHHHH
T ss_pred HHHHhhhcccCeeEEEEccCCcCccCHHHH
Confidence 345654333 35 99999999998754
No 5
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}
Probab=9.83 E-value=64 Score=22.38 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHhhcccCCcchHHHHHHHHHHHHH
Q psy9551 63 VRETRRSTQGVTLEELKSAEQLVKKK 88 (250)
Q Consensus 63 ~rqtrrstQgVtl~dl~~ae~~~~~~ 88 (250)
.++..=-+.|+|.++|+++|+.+...
T Consensus 13 ~~~~~~~~~gas~e~I~~~E~~Lg~~ 38 (152)
T d2prva1 13 NKQNAIFTEGASHENIGRIEENLQCD 38 (152)
T ss_dssp HGGGCEECCCCCHHHHHHHHHHHTSC
T ss_pred cccccccCCCCCHHHHHHHHHHhCCC
Confidence 34445557899999999999987543
No 6
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.52 E-value=49 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=9.8
Q ss_pred cccccCCCCCchh
Q psy9551 39 GEKSFVPPVRDEE 51 (250)
Q Consensus 39 ~rrs~~~pvrdee 51 (250)
|...|++||+|.-
T Consensus 8 R~~~~vtpV~dQG 20 (221)
T d1fh0a_ 8 RKKGYVTPVKNQK 20 (221)
T ss_dssp GGGTCCCCCCBCC
T ss_pred CcCCCCCCCccCC
Confidence 3356999999964
No 7
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Probab=9.03 E-value=56 Score=23.06 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=9.7
Q ss_pred cccccCCCCCchh
Q psy9551 39 GEKSFVPPVRDEE 51 (250)
Q Consensus 39 ~rrs~~~pvrdee 51 (250)
|.+.+++||+|.-
T Consensus 8 R~~~~v~pV~dQg 20 (212)
T d1khqa_ 8 RQKGAVTPVKNQG 20 (212)
T ss_dssp TTTTCCCCCCBCT
T ss_pred CCCCCCCCcccCC
Confidence 3456899999964
No 8
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Probab=8.83 E-value=29 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.2
Q ss_pred HhHHHHHhhc--CCC---CcCCCceeeeccccc
Q psy9551 211 ATQAVIQRRK--RPK---RRSTGVVHVDLDEIL 238 (250)
Q Consensus 211 at~avIqRRR--RPK---RRsTGVv~~dmdd~d 238 (250)
-+..+|..=. +-| ++|.|+.|+|++..-
T Consensus 56 ~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a~ 88 (131)
T d1dxya2 56 YAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMK 88 (131)
T ss_dssp BCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHH
T ss_pred CCHHHHhhcccCCeEEEEEcccccccccccccc
Confidence 3456777644 446 999999999987543
No 9
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}
Probab=8.76 E-value=58 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.6
Q ss_pred cccccCCCCCchh
Q psy9551 39 GEKSFVPPVRDEE 51 (250)
Q Consensus 39 ~rrs~~~pvrdee 51 (250)
|-..|++||||.-
T Consensus 8 R~~~~itpV~dQg 20 (216)
T d1cqda_ 8 RENGAVVPVKNQG 20 (216)
T ss_dssp TTTTCCCCCCBCT
T ss_pred CcCCCCCCcccCC
Confidence 3356999999854
No 10
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
Probab=8.21 E-value=79 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHh
Q psy9551 74 TLEELKSAEQLVKKKQ 89 (250)
Q Consensus 74 tl~dl~~ae~~~~~~~ 89 (250)
|.+||+.||+++++..
T Consensus 239 t~eDl~~ae~ilkkn~ 254 (255)
T d1vica_ 239 TAEDLEKVRAILAANG 254 (255)
T ss_dssp SHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7899999999998753
Done!