RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9551
(250 letters)
>2kjy_A Protein phosphatase 1 regulatory subunit 12A; MYPT1,
phosphorylation, myosin phosphatase, alternative
splicing, ANK repeat, cytoplasm; NMR {Homo sapiens}
Length = 60
Score = 39.0 bits (89), Expect = 8e-05
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 35 EDSEGEKSFVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQLVKK 87
E E +S++ PVRDEESE+QRKA +++ R++RRSTQGVTL +L+ AE+ + +
Sbjct: 7 EVRERRRSYLTPVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEKTIGR 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.001
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 87 KKQQQQLVQASQQPSPEKETPDTSEVSNSQP-VAISATI 124
+KQ + +QAS + D S P +AI AT+
Sbjct: 18 EKQALKKLQASLKLY----ADD------SAPALAIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.35
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 45 PPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQLVKKKQQQQLVQASQQ 99
+E E+ RK RE +R L+EL +A K +Q+ +A +
Sbjct: 77 ADRLTQEPESIRKW-----REEQRK----RLQELDAAS---KVMEQEWREKAKKD 119
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.3
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 13/64 (20%)
Query: 1 MESPSPKTEDEIFWKPASGLRRK----TTDTKNITLKKEDSEGE-----KSFVPPVR--D 49
M + + P + I + SEG+ V + D
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIV--ERFSEGDVVCALCGLVLSDKLVD 58
Query: 50 EESE 53
SE
Sbjct: 59 TRSE 62
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.0 bits (63), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 VRETRRSTQGVTLEELKSAEQLV 85
+ R+TQGVTL L E+L
Sbjct: 317 ISRVGRNTQGVTLIRLSKGEKLQ 339
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta
pinwheel, DNA wrapping, isomerase, DNA bindng protein;
HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 27.8 bits (63), Expect = 3.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 59 HAKRVRETRRSTQGVTLEELKSAEQLV 85
+ R+TQGV L E +V
Sbjct: 274 RVSEISIVGRNTQGVILIRTAEDENVV 300
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 27.6 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 208 NAQATQAVIQRRKRPK---RRSTGVVHVDLDEILDRG 241
+ T+ ++ + R K RS G H+DLD +G
Sbjct: 51 YDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKG 87
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 59 HAKRVRETRRSTQGVTLEELKSAEQLV 85
A++VR+ R T+GV L L + L+
Sbjct: 276 AARQVRKAGRQTKGVRLMNLGEGDTLL 302
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 27.5 bits (60), Expect = 4.7
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 135 SGERRPSWRLRVDNGVKFMLEDARDNPSSNDKTRSSSRGATDTAETTVTIPLRRPGKLAV 194
S + P R + + +++ N ++ K A + G V
Sbjct: 345 SSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATV 404
Query: 195 DSDKEQDKENDSRNAQATQAVIQRRKRPKRRSTG 228
N + + ++R RPK+ +T
Sbjct: 405 KKPSPSKARKKKLNKKGRKMAGRKRGRPKKMNTA 438
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 27.1 bits (61), Expect = 5.7
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 59 HAKRVRETRRSTQGVTLEELKSAEQLV 85
+R + R + G + + + +++
Sbjct: 274 KVGDIRFSDRYSNGSFVLDEEENGRVI 300
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 26.7 bits (58), Expect = 6.0
Identities = 18/88 (20%), Positives = 35/88 (39%)
Query: 42 SFVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQLVKKKQQQQLVQASQQPS 101
S++ V++ E + A +R +R G+ EEL +Q + K +QQ + +QQ
Sbjct: 85 SYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEW 144
Query: 102 PEKETPDTSEVSNSQPVAISATITPSPS 129
+ + + + S S
Sbjct: 145 LQMQQAAQQAQLAAASASASNQAGSSQD 172
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO
gyrase, DNA binding protein, isomerase; HET: DNA GOL;
1.30A {Aquifex aeolicus}
Length = 276
Score = 26.7 bits (60), Expect = 7.0
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 57 KAHAKRVRETRRSTQGVTLEELKSAEQLV 85
K + K + + + + T +L+ E +
Sbjct: 241 KINQKDIPLSTKKSIPRTRWKLEDDEIIK 269
>3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers,
YCIA, structural GENO structure 2 function project, S2F;
HET: CIT; 1.90A {Haemophilus influenzae rd KW20} PDB:
1yli_A*
Length = 153
Score = 26.1 bits (58), Expect = 7.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 36 DSEGEKSFVPPVRDEESETQRKAHAKR 62
D+ G +P ++E E +++
Sbjct: 125 DNNGRSRTIPRENNQELEKALALISEQ 151
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 26.8 bits (60), Expect = 8.2
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 208 NAQATQAVIQRRKRPK-----RRSTGVVHVDLDEILDRG 241
V ++ R+ G ++D+ + G
Sbjct: 53 TTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYG 91
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 26.7 bits (59), Expect = 9.7
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 94 VQASQQPSPEKETPDTSEVSNSQPVAISATITPSPSPTIN---NSGERRPSWRLRV 146
++ + P + PVA I S ++ + + L+
Sbjct: 95 IKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.121 0.326
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,387,864
Number of extensions: 185429
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 30
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.0 bits)