RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9551
         (250 letters)



>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 28.9 bits (63), Expect = 0.70
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 43  FVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQLVKKKQQQQLVQASQQPSP 102
           FVP  R    + + +  A  +R  RR TQ V L + K  E L K++        +     
Sbjct: 1   FVPEYRRTNFKNKGRFSADELRR-RRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEE 59

Query: 103 EKETPDTSEVSNSQ 116
           ++ +    +   SQ
Sbjct: 60  DESSVSADQQFYSQ 73


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 27.2 bits (59), Expect = 2.2
 Identities = 3/27 (11%), Positives = 12/27 (44%)

Query: 59  HAKRVRETRRSTQGVTLEELKSAEQLV 85
               +R + R + G  + + +   +++
Sbjct: 274 KVGDIRFSDRYSNGSFVLDEEENGRVI 300


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 26.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 2   ESPSPKTE-DEIFWKPASGLRRKTTDTKNITLKKEDSEGEKSF 43
           ES  P ++  EI WK    + ++++ T+N   +K   E  +SF
Sbjct: 147 ESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESF 189


>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 25.3 bits (55), Expect = 5.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 42  SFVPPVRDEESETQRKAHAKRVRETRRSTQGVTLEELKSAEQ-LVKKKQQQQLVQASQQP 100
           S++  V++   E +  A  +R   +R    G+  EEL   +Q L  K +QQQ   A Q+ 
Sbjct: 74  SYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEW 133


>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
           dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 361

 Score = 26.0 bits (56), Expect = 5.6
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 29  NITLKKEDSEGEKSFVPPVRDEESETQRKAH--AKRVRETRRSTQGVTLEELKSAEQLVK 86
             T +    E     V     EE +  R        +++   ++   ++EELK  +  V+
Sbjct: 255 LQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVR 314

Query: 87  KKQQQQLVQASQQPSPEKET 106
           K+ +     A+  P P  E 
Sbjct: 315 KEIEDAAQFATADPEPPLEE 334


>d1o7ea_ e.3.1.1 (A:) beta-Lactamase, class A {Stenotrophomonas
           maltophilia, L2 [TaxId: 40324]}
          Length = 267

 Score = 25.5 bits (55), Expect = 5.7
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 135 SGERRPSWRLRVDNGVKFMLEDARDNPSSNDKTRSSSRGATDTAETTVTIPLRRPGKLAV 194
           S ++   W +  + G   +           DKT S+   A +       +    P  L  
Sbjct: 180 SRQQLADWLIDNETGDACLRAGLGKRWRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTA 239

Query: 195 --DSDKEQDKENDSRNAQATQAVIQ 217
              +     ++  S  AQ  +   +
Sbjct: 240 YLQAGAISYEQRASVLAQVGRIADR 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.121    0.326 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,770
Number of extensions: 34001
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 10
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.5 bits)