BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9553
(1282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/504 (24%), Positives = 234/504 (46%), Gaps = 25/504 (4%)
Query: 435 VSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLEL 494
+ S + W + ++ L + + + LP ++++ AF + I + ++
Sbjct: 48 IDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITD 107
Query: 495 MANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIE 554
+ ++A+K RHW+ + + N+ + L +I ++ L + + ++ +A E +E
Sbjct: 108 LHSEAIKDRHWKILKKRLNTNWII--TELTLGSIWDSDLARNENIYREVITAAQGEIALE 165
Query: 555 AKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFR 614
L+ V W+ EL + + + +L+ D + +L + L + ++ + Y F
Sbjct: 166 EFLKGVREFWTTLELDLVNYQRKCKLVRGWD---DLFNKLAEHLNSISAMKMSPYYKVFE 222
Query: 615 KQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVG-GDIAKQLPKEAKRFSKIDKSWQK 673
++ W L+ +L+ W+ VQ WVYLE +F G GDI + LP E+ RF I+ +
Sbjct: 223 EEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIA 282
Query: 674 IMQRAHETPGVVSCCVGDDMXXXXXXXXXXXXXXCQKSLSGYLEKKRMMFPRFFFVSDPA 733
I+++ P ++ + + QK+L YLE++R F RF+FV D
Sbjct: 283 ILKKVSGAPLILEV-LAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDED 341
Query: 734 LLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVR-AEG 792
LLEI+G + D IQ H +F + + E + + S+EGET+ ++ + A G
Sbjct: 342 LLEIIGNSKDIIKIQKHFRKMFAGLANLTL-DDEKTTIIGMSSAEGETVTFKKPISIANG 400
Query: 793 -SVESWLTCLLQMAQQSLHSIIRTAYTSLN----DPNFLLLQFLDKMPAQIGILGIQMIW 847
+ WLT + + +L +++ + N + + +++D P Q+ +L Q++W
Sbjct: 401 PKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVW 460
Query: 848 TRDAESALS----QARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHV 903
+ + AL Q ++ + +LN L D +DL+ +R KFE LIT V
Sbjct: 461 STQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELV 520
Query: 904 HQRDIF-------DILGPEEVQWL 920
HQRD+ ++ G ++ WL
Sbjct: 521 HQRDVVRQLQKCKNLTGNKDFDWL 544
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 923 KTTCIHTLMAALSEVEEPHREMR-MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK 981
KTT + A+ +V+ E M+PKAIT Q+FG LD+ T +WTDG+F+A R+ +
Sbjct: 919 KTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIID 978
Query: 982 LKPGDHV---WLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038
G+ W++ DG VD W+ENLNS+LDDN+ LTL NG+RL++ V+++FE ++
Sbjct: 979 NVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038
Query: 1039 NASPATVSRNGMVYMSSSGLDWSPIVAAWL 1068
A+ AT+SR GMV+ S L I +L
Sbjct: 1039 YATLATISRCGMVWFSEEILTTQMIFQNYL 1068
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 1161 LSPE----HLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVF 1216
+SPE ++ +++L+WG+G + L R F F++ T +P+N +
Sbjct: 1197 MSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAIT--PVPANT----IPLL 1250
Query: 1217 DFYVN-DEGGWEPWSSMVNTYSYPEN--STPDYSSILVPIADNVRIDYLVNCIAKQEHAV 1273
D+ V+ D+ W W + V + + ++PD +++P D R +++ + +
Sbjct: 1251 DYSVSIDDANWSLWKNKVPSVEVETHKVASPD---VVIPTVDTTRHVDVLHAWLSEHRPL 1307
Query: 1274 LLIGESG 1280
+L G G
Sbjct: 1308 ILCGPPG 1314
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/504 (24%), Positives = 234/504 (46%), Gaps = 25/504 (4%)
Query: 435 VSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLEL 494
+ S + W + ++ L + + + LP ++++ AF + I + ++
Sbjct: 48 IDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITD 107
Query: 495 MANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIE 554
+ ++A+K RHW+ + + N+ + L +I ++ L + + ++ +A E +E
Sbjct: 108 LHSEAIKDRHWKILKKRLNTNWII--TELTLGSIWDSDLARNENIYREVITAAQGEIALE 165
Query: 555 AKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFR 614
L+ V W+ EL + + + +L+ D + +L + L + ++ + Y F
Sbjct: 166 EFLKGVREFWTTLELDLVNYQRKCKLVRGWD---DLFNKLAEHLNSISAMKMSPYYKVFE 222
Query: 615 KQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVG-GDIAKQLPKEAKRFSKIDKSWQK 673
++ W L+ +L+ W+ VQ WVYLE +F G GDI + LP E+ RF I+ +
Sbjct: 223 EEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIA 282
Query: 674 IMQRAHETPGVVSCCVGDDMXXXXXXXXXXXXXXCQKSLSGYLEKKRMMFPRFFFVSDPA 733
I+++ P ++ + + QK+L YLE++R F RF+FV D
Sbjct: 283 ILKKVSGAPLILEVLAIERIQQTMERLSDLLGK-VQKALGEYLERQRSAFARFYFVGDED 341
Query: 734 LLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVR-AEG 792
LLEI+G + D IQ H +F + + E + + S+EGET+ ++ + A G
Sbjct: 342 LLEIIGNSKDIIKIQKHFRKMFAGLANLTL-DDEKTTIIGMSSAEGETVTFKKPISIANG 400
Query: 793 -SVESWLTCLLQMAQQSLHSIIRTAYTSLN----DPNFLLLQFLDKMPAQIGILGIQMIW 847
+ WLT + + +L +++ + N + + +++D P Q+ +L Q++W
Sbjct: 401 PKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVW 460
Query: 848 TRDAESALS----QARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHV 903
+ + AL Q ++ + +LN L D +DL+ +R KFE LIT V
Sbjct: 461 STQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELV 520
Query: 904 HQRDIF-------DILGPEEVQWL 920
HQRD+ ++ G ++ WL
Sbjct: 521 HQRDVVRQLQKCKNLTGNKDFDWL 544
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 923 KTTCIHTLMAALSEVEEPHREMR-MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK 981
KTT + A+ +V+ E M+PKAIT Q+FG LD+ T +WTDG+F+A R+ +
Sbjct: 919 KTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIID 978
Query: 982 LKPGDHV---WLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038
G+ W++ DG VD W+ENLNS+LDDN+ LTL NG+RL++ V+++FE ++
Sbjct: 979 NVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038
Query: 1039 NASPATVSRNGMVYMSSSGLDWSPIVAAWL 1068
A+ AT+SR GMV+ S L I +L
Sbjct: 1039 YATLATISRCGMVWFSEEILTTQMIFQNYL 1068
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 1161 LSPE----HLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVF 1216
+SPE ++ +++L+WG+G + L R F F++ T +P+N +
Sbjct: 1197 MSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAIT--PVPANT----IPLL 1250
Query: 1217 DFYVN-DEGGWEPWSSMVNTYSYPEN--STPDYSSILVPIADNVRIDYLVNCIAKQEHAV 1273
D+ V+ D+ W W + V + + ++PD +++P D R +++ + +
Sbjct: 1251 DYSVSIDDANWSLWKNKVPSVEVETHKVASPD---VVIPTVDTTRHVDVLHAWLSEHRPL 1307
Query: 1274 LLIGESG 1280
+L G G
Sbjct: 1308 ILCGPPG 1314
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 946 MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPG----DHVWLVLDGPVDSIWI 1001
++ K +T ++G + AT +W DG+F+++ R+ G +W+V D +D ++
Sbjct: 741 IDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYV 800
Query: 1002 ENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055
E +NSVLDDN+ LTL NG+RL + +I+FE N+D+ +PAT++R G+++ S+
Sbjct: 801 EAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFST 854
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 9/301 (2%)
Query: 601 LGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGG-DIAKQLPK 659
L S+ ++ Y F + L+ +EI W+ VQ W+ L + DI LP
Sbjct: 49 LVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPL 108
Query: 660 EAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMXXXXXXXXXXXXXXCQKSLSGYLEKK 719
E +F + ++ I RA + + + + SLS +LE++
Sbjct: 109 ETSKFKSLTSEYKMITTRAFQLDTTIEV-IHIPNFDTTLKLTIDSLKMIKSSLSTFLERQ 167
Query: 720 RMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEG 779
R FPRF+F+ + LL+I+G + + +F + +++ F E + +T + S EG
Sbjct: 168 RRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFFE---DFITGVRSVEG 224
Query: 780 ETIQLERAVRAEGSVES--WLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQ 837
E + L + + S+++ WL L + S+ + R L D + + + K Q
Sbjct: 225 EVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQLKDGTDIEV-VVSKYIFQ 283
Query: 838 IGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFET 897
+L Q++WT E L Q K E + + LL+ L + KIE + E
Sbjct: 284 AILLSAQVMWTELVEKCL-QTNEFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEY 342
Query: 898 L 898
L
Sbjct: 343 L 343
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 946 MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPG----DHVWLVLDGPVDSIWI 1001
++ K +T ++G + AT +W DG+F+++ R+ G +W+V D +D ++
Sbjct: 960 IDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYV 1019
Query: 1002 ENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055
E +NSVLDDN+ LTL NG+RL + +I+FE N+D+ +PAT++R G+++ S+
Sbjct: 1020 EAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFST 1073
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 9/301 (2%)
Query: 601 LGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGG-DIAKQLPK 659
L S+ ++ Y F + L+ +EI W+ VQ W+ L + DI LP
Sbjct: 268 LVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPL 327
Query: 660 EAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMXXXXXXXXXXXXXXCQKSLSGYLEKK 719
E +F + ++ I RA + + + + SLS +LE++
Sbjct: 328 ETSKFKSLTSEYKMITTRAFQLDTTIEV-IHIPNFDTTLKLTIDSLKMIKSSLSTFLERQ 386
Query: 720 RMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEG 779
R FPRF+F+ + LL+I+G + + +F + +++ F E + +T + S EG
Sbjct: 387 RRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE---DFITGVRSVEG 443
Query: 780 ETIQLERAVRAEGSVES--WLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQ 837
E + L + + S+++ WL L + S+ + R + D + + + K Q
Sbjct: 444 EVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEV-VVSKYIFQ 502
Query: 838 IGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFET 897
+L Q++WT E L Q K E + + LL+ L + KIE + E
Sbjct: 503 AILLSAQVMWTELVEKCL-QTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEY 561
Query: 898 L 898
L
Sbjct: 562 L 562
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 946 MNPKAI-TAAQMFGRLDVATNDWTDGIF---SALWRKTLK--LKPGDHVW 989
NPK I AA + G +D+A G+F S LW K + ++ GD VW
Sbjct: 349 FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVW 398
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 946 MNPKAI-TAAQMFGRLDVATNDWTDGIF---SALWRKTLK--LKPGDHVW 989
NPK I AA + G +D+A G+F S LW K + ++ GD VW
Sbjct: 349 FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVW 398
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 946 MNPKAI-TAAQMFGRLDVATNDWTDGIF---SALWRKTLK--LKPGDHVW 989
NPK I AA + G +D+A G+F S LW K + ++ GD VW
Sbjct: 349 FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVW 398
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 946 MNPKAI-TAAQMFGRLDVATNDWTDGIF---SALWRKTLK--LKPGDHVW 989
NPK I AA + G +D+A G+F S LW K + ++ GD VW
Sbjct: 349 FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVW 398
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 946 MNPKAI-TAAQMFGRLDVATNDWTDGIF---SALWRKTLK--LKPGDHVW 989
NPK I AA + G +D+A G+F S LW K + ++ GD VW
Sbjct: 350 FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVW 399
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 5 GFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDA---KLRIPSVVISPPLEEVQEA 61
G S +L++G PI L+ A + +SG PI + D +L + ++E
Sbjct: 160 GSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEED 219
Query: 62 LITAGKHITGVAKGV-AQWTGGEAQHITGVAKGVAQWTGGEAQRKKKPSFPLQ 113
L+ + +TG V +++G EA G+ +A GGEA+ PS P++
Sbjct: 220 LLEVVRRVTGSGVEVLLEFSGNEAAIHQGL---MALIPGGEARILGIPSDPIR 269
>pdb|1MPY|A Chain A, Structure Of Catechol 2,3-Dioxygenase (Metapyrocatechase)
From Pseudomonas Putida Mt-2
pdb|1MPY|B Chain B, Structure Of Catechol 2,3-Dioxygenase (Metapyrocatechase)
From Pseudomonas Putida Mt-2
pdb|1MPY|C Chain C, Structure Of Catechol 2,3-Dioxygenase (Metapyrocatechase)
From Pseudomonas Putida Mt-2
pdb|1MPY|D Chain D, Structure Of Catechol 2,3-Dioxygenase (Metapyrocatechase)
From Pseudomonas Putida Mt-2
Length = 307
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 188 EAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREM 238
+A +E DL +G +VEQL G E+NSC RR+ F +H E+
Sbjct: 76 DALRQLERDLMAYGC----AVEQLPAG---ELNSCGRRVRFQAPSGHHFEL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,664,135
Number of Sequences: 62578
Number of extensions: 1546648
Number of successful extensions: 3787
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3757
Number of HSP's gapped (non-prelim): 19
length of query: 1282
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1172
effective length of database: 8,089,757
effective search space: 9481195204
effective search space used: 9481195204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)