Query psy9553
Match_columns 1282
No_of_seqs 340 out of 1577
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:34:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 1.7E-81 3.8E-86 752.5 36.0 405 410-820 2-407 (408)
2 COG5245 DYN1 Dynein, heavy cha 100.0 1.2E-40 2.6E-45 398.6 40.5 845 313-1282 335-1506(3164)
3 KOG3595|consensus 99.0 5.9E-10 1.3E-14 150.4 7.7 100 1164-1282 39-139 (1395)
4 PF07728 AAA_5: AAA domain (dy 98.6 6.1E-08 1.3E-12 98.0 7.5 118 918-1048 7-139 (139)
5 COG5245 DYN1 Dynein, heavy cha 98.4 4.9E-08 1.1E-12 121.3 -0.9 134 918-1055 1814-1966(3164)
6 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00024 5.3E-09 79.8 12.4 124 918-1055 29-184 (262)
7 COG5271 MDN1 AAA ATPase contai 97.6 0.0011 2.4E-08 84.8 16.6 104 918-1036 896-1007(4600)
8 PHA02244 ATPase-like protein 97.5 0.00022 4.8E-09 81.5 8.5 121 918-1055 127-260 (383)
9 TIGR01650 PD_CobS cobaltochela 97.3 0.00053 1.2E-08 77.7 8.1 102 918-1032 72-183 (327)
10 KOG1808|consensus 96.5 0.0025 5.4E-08 85.6 5.1 108 918-1038 448-561 (1856)
11 PF06160 EzrA: Septation ring 95.9 7.5 0.00016 48.8 37.8 118 262-394 96-213 (560)
12 cd00176 SPEC Spectrin repeats, 94.8 6.7 0.00015 41.9 25.3 192 233-430 4-200 (213)
13 PRK11331 5-methylcytosine-spec 93.3 0.24 5.2E-06 58.8 8.3 136 918-1056 202-358 (459)
14 PF00435 Spectrin: Spectrin re 92.1 4.3 9.3E-05 37.7 13.9 100 231-330 3-104 (105)
15 COG5271 MDN1 AAA ATPase contai 91.8 4 8.6E-05 54.7 16.2 102 918-1033 157-265 (4600)
16 PRK07940 DNA polymerase III su 91.0 1.5 3.2E-05 52.2 11.2 147 918-1094 44-214 (394)
17 PRK14958 DNA polymerase III su 90.9 1.1 2.3E-05 55.4 10.3 135 918-1070 46-193 (509)
18 PF06160 EzrA: Septation ring 90.5 58 0.0012 41.0 31.5 155 259-426 203-361 (560)
19 TIGR00635 ruvB Holliday juncti 89.1 0.89 1.9E-05 52.4 7.4 112 918-1055 38-158 (305)
20 PF12252 SidE: Dot/Icm substra 89.0 27 0.00058 45.0 19.5 100 370-502 1126-1226(1439)
21 PLN03025 replication factor C 88.2 0.91 2E-05 52.7 6.6 113 918-1056 42-158 (319)
22 PF12774 AAA_6: Hydrolytic ATP 87.3 1.3 2.9E-05 48.5 6.8 89 918-1032 40-139 (231)
23 TIGR00041 DTMP_kinase thymidyl 86.8 0.93 2E-05 48.4 5.3 42 918-960 11-52 (195)
24 PLN02842 nucleotide kinase 86.6 2.6 5.6E-05 51.2 9.2 17 918-934 5-21 (505)
25 PRK00080 ruvB Holliday junctio 86.2 1.9 4.1E-05 50.4 7.7 112 918-1055 59-179 (328)
26 PRK06645 DNA polymerase III su 86.0 1.4 3.1E-05 54.0 6.7 121 918-1055 51-186 (507)
27 PRK14961 DNA polymerase III su 85.9 0.91 2E-05 53.7 5.0 126 918-1056 46-178 (363)
28 PRK14964 DNA polymerase III su 85.7 3.6 7.7E-05 50.2 9.9 109 918-1056 43-175 (491)
29 cd00009 AAA The AAA+ (ATPases 85.3 2.5 5.4E-05 42.0 7.2 117 918-1054 27-150 (151)
30 smart00150 SPEC Spectrin repea 84.8 20 0.00044 32.8 12.8 94 235-328 4-99 (101)
31 PF00004 AAA: ATPase family as 83.8 1.5 3.3E-05 43.1 4.8 107 918-1051 6-127 (132)
32 PRK14963 DNA polymerase III su 83.3 2.8 6.1E-05 51.6 7.7 108 918-1055 44-174 (504)
33 PRK05563 DNA polymerase III su 83.3 2.6 5.5E-05 52.8 7.5 122 918-1056 46-178 (559)
34 PRK14951 DNA polymerase III su 82.7 2.8 6.1E-05 52.6 7.4 124 918-1056 46-183 (618)
35 PRK00440 rfc replication facto 82.6 12 0.00027 43.1 12.6 113 918-1056 46-161 (319)
36 PHA02544 44 clamp loader, smal 82.1 2.9 6.3E-05 48.5 7.0 103 918-1055 51-159 (316)
37 PRK08699 DNA polymerase III su 81.9 3.3 7.1E-05 48.1 7.2 132 918-1071 29-184 (325)
38 KOG3091|consensus 81.8 1.3E+02 0.0027 36.2 21.7 112 164-304 299-413 (508)
39 cd02037 MRP-like MRP (Multiple 80.6 3.3 7.1E-05 43.1 6.1 68 919-996 9-77 (169)
40 PRK12402 replication factor C 80.5 8.8 0.00019 44.8 10.3 121 918-1056 44-184 (337)
41 PRK07003 DNA polymerase III su 79.7 4.5 9.8E-05 51.2 7.6 124 918-1056 46-178 (830)
42 cd01131 PilT Pilus retraction 79.7 5.9 0.00013 42.4 7.8 78 918-999 9-87 (198)
43 PRK04778 septation ring format 79.6 1.8E+02 0.0039 36.7 36.3 46 258-303 206-252 (569)
44 PRK06893 DNA replication initi 79.4 9.2 0.0002 42.0 9.4 104 918-1056 47-161 (229)
45 PRK06305 DNA polymerase III su 78.2 4.1 8.8E-05 49.6 6.7 62 984-1056 119-180 (451)
46 cd02019 NK Nucleoside/nucleoti 78.2 3.2 6.8E-05 36.0 4.2 17 918-934 7-23 (69)
47 TIGR02881 spore_V_K stage V sp 78.1 3.7 8.1E-05 46.1 5.9 22 918-939 50-71 (261)
48 PRK14956 DNA polymerase III su 77.4 3.1 6.7E-05 50.3 5.1 121 918-1057 48-181 (484)
49 TIGR00763 lon ATP-dependent pr 76.9 5.4 0.00012 52.3 7.7 123 918-1055 355-491 (775)
50 KOG0994|consensus 76.7 1.4E+02 0.003 39.3 18.8 96 234-333 1199-1294(1758)
51 COG0598 CorA Mg2+ and Co2+ tra 76.7 1.3E+02 0.0028 34.9 18.3 118 219-341 137-255 (322)
52 PRK08084 DNA replication initi 76.6 2.1 4.5E-05 47.3 3.2 96 918-1049 53-157 (235)
53 PRK06090 DNA polymerase III su 75.4 21 0.00045 41.2 11.0 144 918-1095 33-203 (319)
54 TIGR01650 PD_CobS cobaltochela 75.0 4.3 9.4E-05 46.6 5.3 33 1247-1282 44-76 (327)
55 COG2812 DnaX DNA polymerase II 74.7 6.3 0.00014 48.1 6.8 121 918-1054 46-176 (515)
56 TIGR01969 minD_arch cell divis 74.7 4.3 9.3E-05 45.2 5.2 41 919-959 10-50 (251)
57 PRK07133 DNA polymerase III su 74.4 6.8 0.00015 49.9 7.2 119 918-1056 48-177 (725)
58 PRK14971 DNA polymerase III su 74.2 7.8 0.00017 49.1 7.8 62 984-1056 119-180 (614)
59 cd02042 ParA ParA and ParB of 74.2 4.8 0.0001 37.9 4.6 30 920-949 10-39 (104)
60 PRK08118 topology modulation p 74.1 3.6 7.8E-05 42.8 4.1 17 918-934 9-25 (167)
61 PRK04863 mukB cell division pr 73.9 4E+02 0.0086 37.7 40.9 64 587-650 553-621 (1486)
62 PRK05896 DNA polymerase III su 73.3 13 0.00028 46.4 9.1 121 918-1056 46-178 (605)
63 COG0470 HolB ATPase involved i 73.1 11 0.00024 43.7 8.3 112 918-1055 32-167 (325)
64 PRK14955 DNA polymerase III su 72.9 17 0.00037 43.6 10.0 71 985-1069 126-196 (397)
65 cd02036 MinD Bacterial cell di 72.3 5.1 0.00011 41.8 4.8 65 919-997 9-73 (179)
66 TIGR03345 VI_ClpV1 type VI sec 72.3 12 0.00027 49.3 9.2 105 918-1032 604-714 (852)
67 PRK13808 adenylate kinase; Pro 72.2 5.4 0.00012 46.1 5.2 102 918-1036 8-117 (333)
68 PHA02244 ATPase-like protein 72.2 4.9 0.00011 46.8 4.8 21 1262-1282 111-131 (383)
69 PRK08691 DNA polymerase III su 72.0 5.6 0.00012 50.2 5.6 121 918-1055 46-177 (709)
70 PRK05564 DNA polymerase III su 71.8 11 0.00024 43.6 7.8 122 918-1070 34-163 (313)
71 PF13238 AAA_18: AAA domain; P 71.8 2 4.3E-05 42.0 1.4 17 918-934 6-22 (129)
72 PRK08769 DNA polymerase III su 71.6 20 0.00043 41.5 9.6 152 918-1095 34-210 (319)
73 PRK07994 DNA polymerase III su 71.5 10 0.00022 47.9 7.8 122 918-1056 46-178 (647)
74 PRK14957 DNA polymerase III su 71.4 7.8 0.00017 48.0 6.7 123 918-1056 46-178 (546)
75 PRK08451 DNA polymerase III su 71.2 11 0.00024 46.6 7.8 132 918-1069 44-186 (535)
76 PRK14949 DNA polymerase III su 71.0 9.2 0.0002 49.6 7.2 122 918-1056 46-178 (944)
77 PRK07764 DNA polymerase III su 70.8 5.8 0.00013 51.7 5.6 130 918-1070 45-190 (824)
78 CHL00181 cbbX CbbX; Provisiona 70.7 6.6 0.00014 44.7 5.5 111 918-1056 67-196 (287)
79 PRK14960 DNA polymerase III su 70.3 5.6 0.00012 49.8 5.0 122 918-1056 45-177 (702)
80 PF14122 YokU: YokU-like prote 70.2 2.2 4.8E-05 37.7 1.2 44 999-1056 3-49 (87)
81 TIGR03574 selen_PSTK L-seryl-t 70.0 3.5 7.6E-05 46.0 3.1 21 918-938 7-27 (249)
82 PRK09435 membrane ATPase/prote 69.5 11 0.00024 43.7 7.0 41 918-958 64-105 (332)
83 PRK05707 DNA polymerase III su 69.4 13 0.00028 43.2 7.6 147 918-1094 30-204 (328)
84 TIGR00678 holB DNA polymerase 69.4 8.5 0.00018 40.8 5.7 136 918-1070 22-166 (188)
85 PRK05917 DNA polymerase III su 69.1 11 0.00025 42.6 6.8 112 918-1056 27-154 (290)
86 PRK14530 adenylate kinase; Pro 69.0 5.7 0.00012 43.1 4.4 18 918-935 11-28 (215)
87 PRK08233 hypothetical protein; 69.0 4.2 9.2E-05 42.6 3.3 18 918-935 11-28 (182)
88 PF07693 KAP_NTPase: KAP famil 68.6 4.2 9.1E-05 47.3 3.5 35 918-952 28-63 (325)
89 PRK08058 DNA polymerase III su 68.3 8 0.00017 45.1 5.7 96 985-1095 109-206 (329)
90 PRK14954 DNA polymerase III su 68.3 31 0.00067 43.7 11.1 71 985-1069 126-196 (620)
91 PF01656 CbiA: CobQ/CobB/MinD/ 67.8 3.1 6.6E-05 44.2 2.0 40 919-958 8-47 (195)
92 PRK06647 DNA polymerase III su 67.6 7 0.00015 48.9 5.2 121 918-1055 46-177 (563)
93 PRK14970 DNA polymerase III su 67.3 39 0.00085 40.0 11.4 128 918-1069 47-177 (367)
94 PRK14969 DNA polymerase III su 67.2 14 0.0003 46.0 7.7 121 918-1056 46-178 (527)
95 PRK14526 adenylate kinase; Pro 67.1 7.3 0.00016 42.2 4.6 88 918-1008 8-100 (211)
96 TIGR01425 SRP54_euk signal rec 67.0 56 0.0012 39.3 12.3 90 918-1009 108-209 (429)
97 PRK06871 DNA polymerase III su 66.3 13 0.00028 43.1 6.7 123 918-1071 32-178 (325)
98 KOG0989|consensus 66.3 7.3 0.00016 43.6 4.4 55 987-1055 130-187 (346)
99 KOG0933|consensus 66.0 4.2E+02 0.0091 34.9 26.3 98 342-446 413-510 (1174)
100 PRK06762 hypothetical protein; 65.7 4.3 9.3E-05 42.0 2.5 70 918-998 10-79 (166)
101 PHA02518 ParA-like protein; Pr 65.3 9.5 0.00021 41.0 5.2 31 920-950 11-41 (211)
102 PRK13973 thymidylate kinase; P 65.3 13 0.00029 40.3 6.3 37 918-955 11-47 (213)
103 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.3 7.8 0.00017 41.7 4.5 41 918-958 46-88 (205)
104 PRK07261 topology modulation p 65.2 11 0.00023 39.4 5.4 17 918-934 8-24 (171)
105 cd01983 Fer4_NifH The Fer4_Nif 65.1 8.2 0.00018 35.2 4.1 21 920-940 9-29 (99)
106 PRK09112 DNA polymerase III su 64.9 19 0.00042 42.2 7.9 139 918-1070 53-211 (351)
107 PF05729 NACHT: NACHT domain 64.9 8.4 0.00018 39.4 4.5 38 918-955 8-49 (166)
108 TIGR02880 cbbX_cfxQ probable R 64.5 9.4 0.0002 43.5 5.1 31 918-948 66-98 (284)
109 PF05478 Prominin: Prominin; 64.3 4.3E+02 0.0092 35.1 20.9 24 653-676 643-666 (806)
110 PF13177 DNA_pol3_delta2: DNA 63.9 21 0.00045 36.9 7.1 115 918-1055 27-160 (162)
111 PRK14952 DNA polymerase III su 63.8 11 0.00023 47.4 5.8 129 918-1069 43-187 (584)
112 cd03111 CpaE_like This protein 63.6 13 0.00027 35.4 5.1 31 919-949 9-40 (106)
113 PRK14950 DNA polymerase III su 63.6 16 0.00036 46.1 7.5 61 985-1056 119-179 (585)
114 PF00158 Sigma54_activat: Sigm 63.5 17 0.00037 37.8 6.4 101 918-1034 30-141 (168)
115 PRK12726 flagellar biosynthesi 63.4 11 0.00024 44.2 5.3 91 918-1010 214-313 (407)
116 PF03029 ATP_bind_1: Conserved 63.0 6.1 0.00013 43.6 3.2 48 918-968 4-51 (238)
117 COG0125 Tmk Thymidylate kinase 63.0 14 0.00031 39.7 5.9 21 919-939 12-32 (208)
118 cd07665 BAR_SNX1 The Bin/Amphi 62.9 2.4E+02 0.0052 31.0 18.4 68 367-436 75-143 (234)
119 PLN02796 D-glycerate 3-kinase 62.7 11 0.00023 43.8 5.0 21 918-938 108-128 (347)
120 TIGR02639 ClpA ATP-dependent C 62.6 22 0.00047 46.4 8.6 105 918-1037 492-603 (731)
121 PRK10037 cell division protein 62.3 9.5 0.00021 42.5 4.6 38 920-958 12-49 (250)
122 smart00382 AAA ATPases associa 62.2 9.1 0.0002 37.4 4.1 34 918-953 10-43 (148)
123 PRK14962 DNA polymerase III su 62.1 9.9 0.00022 46.5 5.0 122 918-1056 44-176 (472)
124 PRK06217 hypothetical protein; 62.0 9.2 0.0002 40.4 4.2 17 918-934 9-25 (183)
125 TIGR01968 minD_bact septum sit 61.8 9.9 0.00021 42.5 4.7 41 919-959 11-51 (261)
126 cd03115 SRP The signal recogni 61.8 12 0.00027 38.9 5.1 88 918-1008 8-108 (173)
127 TIGR02397 dnaX_nterm DNA polym 61.6 14 0.0003 43.6 6.1 60 985-1055 116-175 (355)
128 PRK14965 DNA polymerase III su 61.2 14 0.0003 46.7 6.2 61 985-1056 118-178 (576)
129 PRK11034 clpA ATP-dependent Cl 61.2 17 0.00036 47.2 7.0 97 918-1026 496-598 (758)
130 PRK10865 protein disaggregatio 61.0 13 0.00029 49.1 6.3 129 918-1055 606-765 (857)
131 PRK12323 DNA polymerase III su 60.8 12 0.00026 46.9 5.3 123 918-1056 46-183 (700)
132 PRK03918 chromosome segregatio 60.4 5.6E+02 0.012 34.4 33.8 22 414-435 491-512 (880)
133 KOG1534|consensus 59.8 6.5 0.00014 41.4 2.4 35 918-952 11-45 (273)
134 PRK14959 DNA polymerase III su 59.8 15 0.00033 46.1 6.1 121 918-1056 46-178 (624)
135 PTZ00088 adenylate kinase 1; P 59.6 9.1 0.0002 42.0 3.8 18 918-935 14-31 (229)
136 TIGR03453 partition_RepA plasm 59.6 16 0.00034 43.8 6.1 41 918-959 113-153 (387)
137 PRK00698 tmk thymidylate kinas 59.3 12 0.00025 40.1 4.6 21 918-938 11-31 (205)
138 PRK14948 DNA polymerase III su 59.2 15 0.00033 46.5 6.1 120 918-1056 46-180 (620)
139 TIGR00064 ftsY signal recognit 58.8 10 0.00022 42.9 4.0 31 918-948 80-110 (272)
140 TIGR01360 aden_kin_iso1 adenyl 58.6 8.6 0.00019 40.5 3.3 17 918-934 11-27 (188)
141 PF13207 AAA_17: AAA domain; P 58.0 7.3 0.00016 37.7 2.4 17 918-934 7-23 (121)
142 PRK09111 DNA polymerase III su 57.5 20 0.00044 45.2 6.7 72 985-1070 131-202 (598)
143 PF13173 AAA_14: AAA domain 57.2 15 0.00032 36.1 4.5 76 918-1011 10-87 (128)
144 KOG0996|consensus 57.0 6.4E+02 0.014 34.0 33.2 57 301-357 435-494 (1293)
145 PRK14088 dnaA chromosomal repl 56.8 5 0.00011 48.7 1.2 117 918-1058 138-265 (440)
146 PRK14527 adenylate kinase; Pro 56.6 14 0.0003 39.2 4.5 18 918-935 14-31 (191)
147 KOG0991|consensus 56.3 7.5 0.00016 41.6 2.2 17 918-934 56-72 (333)
148 KOG4286|consensus 56.1 1.3E+02 0.0029 37.7 12.6 93 232-324 223-326 (966)
149 TIGR02030 BchI-ChlI magnesium 56.0 29 0.00063 40.5 7.2 122 918-1051 33-199 (337)
150 TIGR01420 pilT_fam pilus retra 55.9 36 0.00079 39.9 8.2 77 918-1002 130-211 (343)
151 PF13555 AAA_29: P-loop contai 55.6 9.5 0.00021 32.3 2.3 18 918-935 31-48 (62)
152 PRK10536 hypothetical protein; 55.4 13 0.00028 41.2 4.0 45 918-964 82-126 (262)
153 PRK04195 replication factor C 55.0 36 0.00079 42.0 8.4 104 918-1057 47-161 (482)
154 cd02024 NRK1 Nicotinamide ribo 54.9 19 0.00041 38.1 5.1 17 918-934 7-23 (187)
155 COG3842 PotA ABC-type spermidi 54.3 7 0.00015 45.4 1.8 15 918-932 39-53 (352)
156 PRK08181 transposase; Validate 53.7 16 0.00035 41.1 4.5 19 1264-1282 100-118 (269)
157 PF10168 Nup88: Nuclear pore c 53.6 3.3E+02 0.0072 35.3 16.6 123 256-391 532-655 (717)
158 TIGR02903 spore_lon_C ATP-depe 53.1 40 0.00086 42.9 8.4 130 918-1055 183-352 (615)
159 PRK07667 uridine kinase; Provi 52.9 13 0.00029 39.5 3.6 25 918-942 25-49 (193)
160 PRK13974 thymidylate kinase; P 52.8 26 0.00055 38.0 5.8 21 918-938 11-31 (212)
161 PF08429 PLU-1: PLU-1-like pro 52.8 4.3E+02 0.0093 30.7 25.0 88 214-302 45-153 (335)
162 PRK13869 plasmid-partitioning 52.4 25 0.00053 42.3 6.1 41 918-959 130-170 (405)
163 PF07139 DUF1387: Protein of u 52.4 2E+02 0.0044 32.6 12.5 51 275-325 151-201 (302)
164 PRK06526 transposase; Provisio 52.1 8.2 0.00018 43.1 1.9 17 1266-1282 94-110 (254)
165 PRK13976 thymidylate kinase; P 51.9 18 0.00038 39.2 4.3 19 919-937 9-27 (209)
166 PF10168 Nup88: Nuclear pore c 51.8 6.7E+02 0.014 32.6 22.3 24 373-396 690-713 (717)
167 COG1126 GlnQ ABC-type polar am 51.7 8.6 0.00019 41.1 1.8 15 918-932 36-50 (240)
168 PRK07993 DNA polymerase III su 51.5 1.1E+02 0.0023 35.8 11.0 148 918-1095 32-206 (334)
169 PRK13232 nifH nitrogenase redu 51.3 37 0.0008 38.3 7.1 39 920-958 11-49 (273)
170 COG0178 UvrA Excinuclease ATPa 51.1 1E+02 0.0022 39.5 11.0 28 793-820 368-395 (935)
171 PRK07933 thymidylate kinase; V 51.0 32 0.0007 37.3 6.2 23 919-941 9-31 (213)
172 KOG0996|consensus 50.7 7.9E+02 0.017 33.2 22.5 33 247-279 845-877 (1293)
173 PRK11889 flhF flagellar biosyn 50.6 21 0.00046 42.1 4.9 90 918-1009 249-347 (436)
174 PRK05642 DNA replication initi 50.0 54 0.0012 36.1 8.0 106 918-1055 53-165 (234)
175 PRK14953 DNA polymerase III su 49.8 22 0.00049 43.7 5.3 134 918-1070 46-189 (486)
176 PRK13342 recombination factor 49.8 20 0.00043 43.3 4.8 17 918-934 44-60 (413)
177 PRK05703 flhF flagellar biosyn 49.6 18 0.0004 43.6 4.4 87 918-1009 229-326 (424)
178 PRK13768 GTPase; Provisional 49.5 16 0.00034 40.9 3.6 33 918-950 10-42 (253)
179 PF01544 CorA: CorA-like Mg2+ 49.4 3.8E+02 0.0082 30.2 15.2 97 219-322 108-208 (292)
180 smart00787 Spc7 Spc7 kinetocho 49.3 4.7E+02 0.01 30.2 24.5 79 209-297 120-202 (312)
181 PF15290 Syntaphilin: Golgi-lo 49.1 3.1E+02 0.0068 30.5 12.8 38 315-360 70-107 (305)
182 COG1116 TauB ABC-type nitrate/ 49.1 9.8 0.00021 41.6 1.8 16 918-933 37-52 (248)
183 TIGR02928 orc1/cdc6 family rep 48.9 59 0.0013 38.4 8.6 34 918-951 48-85 (365)
184 COG1117 PstB ABC-type phosphat 48.7 10 0.00023 40.3 1.8 16 918-933 41-56 (253)
185 TIGR00382 clpX endopeptidase C 48.1 41 0.00089 40.3 6.9 67 918-997 124-191 (413)
186 cd01120 RecA-like_NTPases RecA 48.0 49 0.0011 33.3 6.9 21 918-938 7-27 (165)
187 PF03215 Rad17: Rad17 cell cyc 48.0 11 0.00024 46.6 2.2 17 918-934 53-69 (519)
188 PRK13851 type IV secretion sys 47.8 16 0.00035 42.6 3.5 25 1258-1282 150-174 (344)
189 COG4477 EzrA Negative regulato 47.7 6.1E+02 0.013 31.1 21.6 187 213-423 258-461 (570)
190 PRK04220 2-phosphoglycerate ki 47.6 15 0.00033 41.8 3.1 17 918-934 100-116 (301)
191 PRK14529 adenylate kinase; Pro 47.5 31 0.00067 37.6 5.4 83 918-1009 8-100 (223)
192 cd03110 Fer4_NifH_child This p 47.5 34 0.00074 35.7 5.7 37 919-959 9-45 (179)
193 cd02025 PanK Pantothenate kina 47.4 18 0.0004 39.4 3.7 19 918-936 7-25 (220)
194 KOG0742|consensus 47.2 15 0.00031 42.6 2.8 14 176-189 111-124 (630)
195 cd02040 NifH NifH gene encodes 47.1 34 0.00074 38.4 6.0 31 920-950 11-41 (270)
196 PRK13900 type IV secretion sys 46.4 20 0.00043 41.7 3.9 25 1258-1282 148-172 (332)
197 COG3839 MalK ABC-type sugar tr 46.2 11 0.00024 43.5 1.8 16 918-933 37-52 (338)
198 PRK10787 DNA-binding ATP-depen 46.2 55 0.0012 42.9 8.2 125 918-1055 357-492 (784)
199 PRK06964 DNA polymerase III su 46.0 1.3E+02 0.0028 35.2 10.5 73 985-1071 131-203 (342)
200 PF09602 PhaP_Bmeg: Polyhydrox 45.9 2.7E+02 0.0059 28.6 11.1 140 308-469 10-159 (165)
201 cd00046 DEXDc DEAD-like helica 45.8 10 0.00022 37.0 1.2 40 918-957 8-47 (144)
202 PRK13695 putative NTPase; Prov 45.7 60 0.0013 33.8 7.1 32 985-1016 95-131 (174)
203 PRK11670 antiporter inner memb 45.6 47 0.001 39.3 7.0 42 918-959 116-157 (369)
204 cd02028 UMPK_like Uridine mono 45.6 20 0.00042 37.8 3.4 23 918-940 7-29 (179)
205 KOG0744|consensus 45.5 8.6 0.00019 43.3 0.7 17 1266-1282 173-189 (423)
206 PRK13849 putative crown gall t 45.2 34 0.00073 37.7 5.3 76 920-997 12-94 (231)
207 cd00227 CPT Chloramphenicol (C 45.0 20 0.00044 37.3 3.5 18 918-935 10-27 (175)
208 COG1223 Predicted ATPase (AAA+ 45.0 11 0.00025 41.0 1.5 18 1183-1200 46-63 (368)
209 PRK06851 hypothetical protein; 44.7 22 0.00047 41.8 3.9 34 918-951 222-257 (367)
210 PRK00771 signal recognition pa 44.7 1E+02 0.0022 37.4 9.6 87 918-1007 103-200 (437)
211 PF13245 AAA_19: Part of AAA d 44.7 27 0.00058 31.0 3.6 39 918-956 18-58 (76)
212 COG1703 ArgK Putative periplas 44.6 87 0.0019 35.4 8.2 55 905-959 37-101 (323)
213 PTZ00112 origin recognition co 44.4 37 0.0008 44.0 5.9 133 913-1055 779-935 (1164)
214 KOG0040|consensus 44.4 1.1E+03 0.023 33.0 28.4 128 233-360 2027-2162(2399)
215 TIGR01007 eps_fam capsular exo 44.2 26 0.00057 37.5 4.2 40 919-958 27-66 (204)
216 PF02223 Thymidylate_kin: Thym 44.2 19 0.00042 37.9 3.1 31 919-950 5-35 (186)
217 COG0529 CysC Adenylylsulfate k 44.1 25 0.00053 36.5 3.6 23 918-940 31-53 (197)
218 PRK07399 DNA polymerase III su 43.8 56 0.0012 37.7 7.1 139 918-1071 34-194 (314)
219 PRK13949 shikimate kinase; Pro 43.6 8.3 0.00018 40.2 0.2 18 918-935 9-26 (169)
220 PRK06526 transposase; Provisio 43.6 21 0.00045 39.9 3.4 77 918-1009 106-186 (254)
221 TIGR01448 recD_rel helicase, p 43.4 43 0.00093 43.5 6.6 31 918-948 346-376 (720)
222 KOG0250|consensus 43.3 9.7E+02 0.021 32.1 24.9 31 1165-1197 997-1027(1074)
223 TIGR02902 spore_lonB ATP-depen 43.3 61 0.0013 40.5 7.8 132 918-1056 94-263 (531)
224 PRK06696 uridine kinase; Valid 42.9 21 0.00046 38.9 3.3 23 918-940 30-52 (223)
225 PRK07132 DNA polymerase III su 42.8 2E+02 0.0043 33.0 11.2 154 918-1096 26-187 (299)
226 cd03114 ArgK-like The function 42.3 30 0.00066 35.1 4.1 31 918-948 7-37 (148)
227 KOG0250|consensus 42.0 1E+03 0.022 32.0 25.2 57 586-642 658-716 (1074)
228 TIGR01351 adk adenylate kinase 41.9 21 0.00045 38.6 3.0 17 918-934 7-23 (210)
229 PRK04132 replication factor C 41.9 78 0.0017 41.5 8.5 115 915-1056 571-689 (846)
230 PRK13833 conjugal transfer pro 41.9 20 0.00043 41.5 2.9 23 1260-1282 134-156 (323)
231 KOG1533|consensus 41.8 21 0.00046 38.5 2.8 32 918-949 10-41 (290)
232 PRK10820 DNA-binding transcrip 41.7 27 0.00058 43.5 4.3 38 1245-1282 202-239 (520)
233 cd00176 SPEC Spectrin repeats, 41.5 4.3E+02 0.0094 27.6 16.9 90 241-330 118-210 (213)
234 PRK04778 septation ring format 41.4 8.4E+02 0.018 30.8 40.1 118 262-394 100-217 (569)
235 PF04912 Dynamitin: Dynamitin 41.4 6.7E+02 0.015 29.9 15.9 17 232-248 264-280 (388)
236 PF03308 ArgK: ArgK protein; 41.4 29 0.00064 38.4 4.0 42 918-959 37-79 (266)
237 PF12128 DUF3584: Protein of u 41.1 1.2E+03 0.026 32.6 38.0 46 250-295 761-806 (1201)
238 PF07106 TBPIP: Tat binding pr 41.0 3.8E+02 0.0083 27.7 12.2 79 341-427 85-163 (169)
239 PF00485 PRK: Phosphoribulokin 40.9 20 0.00043 38.2 2.6 23 918-940 7-29 (194)
240 PF08317 Spc7: Spc7 kinetochor 40.7 6.4E+02 0.014 29.3 24.6 28 221-248 141-168 (325)
241 PRK11545 gntK gluconate kinase 40.4 18 0.0004 37.3 2.2 18 918-935 3-20 (163)
242 cd03280 ABC_MutS2 MutS2 homolo 40.2 50 0.0011 35.3 5.6 75 918-996 36-118 (200)
243 cd01672 TMPK Thymidine monopho 40.1 27 0.00059 36.9 3.6 33 918-951 8-40 (200)
244 PF05496 RuvB_N: Holliday junc 40.1 15 0.00033 39.7 1.6 12 1271-1282 51-62 (233)
245 PRK15424 propionate catabolism 40.1 27 0.00059 43.4 4.0 37 1246-1282 218-254 (538)
246 PRK09270 nucleoside triphospha 39.8 27 0.00059 38.3 3.6 23 918-940 41-63 (229)
247 PF12846 AAA_10: AAA-like doma 39.8 26 0.00057 39.8 3.6 30 918-949 9-38 (304)
248 TIGR02688 conserved hypothetic 39.6 29 0.00062 41.3 3.8 27 1256-1282 193-221 (449)
249 TIGR02880 cbbX_cfxQ probable R 39.3 16 0.00035 41.6 1.7 14 1269-1282 57-70 (284)
250 TIGR01313 therm_gnt_kin carboh 39.2 18 0.00038 37.2 1.9 17 918-934 6-22 (163)
251 CHL00095 clpC Clp protease ATP 39.1 72 0.0016 42.3 7.9 108 918-1037 547-661 (821)
252 PRK15429 formate hydrogenlyase 39.1 30 0.00066 44.8 4.4 25 1258-1282 387-411 (686)
253 TIGR02322 phosphon_PhnN phosph 39.0 18 0.0004 37.8 2.0 18 918-935 9-26 (179)
254 COG1224 TIP49 DNA helicase TIP 39.0 33 0.00071 39.4 3.9 36 1247-1282 38-77 (450)
255 TIGR02680 conserved hypothetic 39.0 6E+02 0.013 35.9 16.9 104 256-360 219-322 (1353)
256 COG0606 Predicted ATPase with 38.8 21 0.00046 42.7 2.6 20 1263-1282 191-210 (490)
257 TIGR02782 TrbB_P P-type conjug 38.8 27 0.0006 40.0 3.5 22 1261-1282 123-144 (299)
258 PF08433 KTI12: Chromatin asso 38.7 21 0.00045 40.3 2.4 21 919-939 10-30 (270)
259 COG1120 FepC ABC-type cobalami 38.6 12 0.00026 41.5 0.6 159 918-1115 36-207 (258)
260 smart00763 AAA_PrkA PrkA AAA d 38.6 21 0.00045 41.7 2.4 112 918-1059 86-199 (361)
261 CHL00181 cbbX CbbX; Provisiona 38.4 17 0.00037 41.4 1.7 14 1269-1282 58-71 (287)
262 TIGR02329 propionate_PrpR prop 38.1 29 0.00063 43.1 3.8 37 1246-1282 211-247 (526)
263 COG1136 SalX ABC-type antimicr 38.1 18 0.0004 39.3 1.8 15 918-932 39-53 (226)
264 COG4525 TauB ABC-type taurine 37.9 19 0.00041 37.9 1.7 16 918-933 39-54 (259)
265 PRK12724 flagellar biosynthesi 37.8 51 0.0011 39.4 5.5 89 918-1009 231-326 (432)
266 TIGR01817 nifA Nif-specific re 37.7 31 0.00068 43.2 4.1 28 1255-1282 204-231 (534)
267 TIGR00554 panK_bact pantothena 37.7 31 0.00067 39.3 3.6 20 918-937 70-89 (290)
268 TIGR03815 CpaE_hom_Actino heli 37.7 54 0.0012 38.1 5.8 51 918-968 102-152 (322)
269 cd02038 FleN-like FleN is a me 37.6 56 0.0012 32.6 5.2 30 919-948 9-38 (139)
270 COG2204 AtoC Response regulato 37.5 38 0.00081 41.0 4.4 37 1246-1282 140-176 (464)
271 PF13671 AAA_33: AAA domain; P 37.3 19 0.00041 35.9 1.7 18 918-935 7-24 (143)
272 PRK07471 DNA polymerase III su 37.3 1.1E+02 0.0023 36.3 8.1 73 985-1071 140-212 (365)
273 PLN02459 probable adenylate ki 37.2 44 0.00096 37.3 4.6 85 918-1007 37-130 (261)
274 TIGR00383 corA magnesium Mg(2+ 37.1 7E+02 0.015 28.7 18.6 96 220-320 133-230 (318)
275 cd07588 BAR_Amphiphysin The Bi 36.8 5.8E+02 0.013 27.6 16.9 80 215-294 73-159 (211)
276 COG1219 ClpX ATP-dependent pro 36.7 19 0.0004 40.7 1.6 14 1269-1282 96-109 (408)
277 PRK13833 conjugal transfer pro 36.6 32 0.0007 39.8 3.6 18 918-935 152-169 (323)
278 COG0714 MoxR-like ATPases [Gen 36.6 22 0.00047 41.5 2.3 120 918-1056 51-189 (329)
279 PRK10078 ribose 1,5-bisphospho 36.5 19 0.00042 38.0 1.7 90 918-1023 10-100 (186)
280 PF00437 T2SE: Type II/IV secr 36.2 24 0.00052 39.8 2.5 27 1256-1282 113-139 (270)
281 PRK06851 hypothetical protein; 36.2 34 0.00073 40.2 3.7 26 918-943 38-63 (367)
282 cd02023 UMPK Uridine monophosp 36.2 23 0.0005 37.8 2.2 17 918-934 7-23 (198)
283 cd02029 PRK_like Phosphoribulo 35.9 77 0.0017 35.5 6.1 67 918-986 7-87 (277)
284 COG0283 Cmk Cytidylate kinase 35.7 24 0.00051 37.9 2.1 18 918-935 12-29 (222)
285 TIGR02031 BchD-ChlD magnesium 35.7 65 0.0014 40.8 6.4 118 918-1050 24-153 (589)
286 TIGR00750 lao LAO/AO transport 35.6 36 0.00077 39.1 3.8 33 918-950 42-74 (300)
287 PLN03046 D-glycerate 3-kinase; 35.6 57 0.0012 38.9 5.4 21 918-938 220-240 (460)
288 TIGR02788 VirB11 P-type DNA tr 35.6 32 0.0007 39.6 3.5 24 1259-1282 133-156 (308)
289 PRK09183 transposase/IS protei 35.6 20 0.00044 40.1 1.8 16 1267-1282 99-114 (259)
290 PF01935 DUF87: Domain of unkn 35.5 36 0.00079 37.2 3.7 31 918-949 31-61 (229)
291 TIGR02525 plasmid_TraJ plasmid 34.9 37 0.0008 40.2 3.8 59 739-801 4-63 (372)
292 PF06068 TIP49: TIP49 C-termin 34.9 19 0.00042 41.8 1.4 16 1267-1282 47-62 (398)
293 TIGR02524 dot_icm_DotB Dot/Icm 34.8 23 0.00049 41.8 2.0 22 1261-1282 125-146 (358)
294 PF08317 Spc7: Spc7 kinetochor 34.8 7.8E+02 0.017 28.6 21.3 14 138-151 73-86 (325)
295 PRK13407 bchI magnesium chelat 34.5 70 0.0015 37.3 5.9 123 918-1051 37-196 (334)
296 KOG0738|consensus 34.4 20 0.00042 41.6 1.3 20 1263-1282 238-257 (491)
297 PRK10867 signal recognition pa 34.3 2.1E+02 0.0045 34.7 10.0 91 918-1009 108-210 (433)
298 PRK12727 flagellar biosynthesi 34.3 69 0.0015 39.5 6.0 83 918-1005 358-451 (559)
299 PRK13894 conjugal transfer ATP 34.2 30 0.00066 40.0 2.9 22 1261-1282 139-160 (319)
300 PTZ00301 uridine kinase; Provi 34.0 42 0.0009 36.3 3.7 19 918-936 11-29 (210)
301 KOG4302|consensus 33.7 1.1E+03 0.024 30.1 31.2 84 539-626 358-446 (660)
302 COG1419 FlhF Flagellar GTP-bin 33.5 30 0.00066 40.7 2.7 13 1270-1282 203-215 (407)
303 PF03823 Neurokinin_B: Neuroki 33.5 29 0.00064 28.1 1.8 21 1165-1185 6-26 (59)
304 COG1674 FtsK DNA segregation A 33.4 37 0.00079 45.1 3.8 41 918-958 538-580 (858)
305 PRK10263 DNA translocase FtsK; 33.3 40 0.00086 45.5 4.0 35 918-952 1018-1054(1355)
306 KOG0060|consensus 33.3 22 0.00048 43.4 1.6 18 1265-1282 456-473 (659)
307 KOG0734|consensus 33.3 22 0.00048 42.8 1.5 12 1271-1282 338-349 (752)
308 COG1102 Cmk Cytidylate kinase 33.2 29 0.00063 35.4 2.1 18 918-935 8-25 (179)
309 PF07015 VirC1: VirC1 protein; 33.0 40 0.00086 36.8 3.3 29 920-948 12-40 (231)
310 PF13401 AAA_22: AAA domain; P 33.0 32 0.0007 33.5 2.6 19 918-936 12-30 (131)
311 COG4619 ABC-type uncharacteriz 33.0 26 0.00056 35.9 1.8 15 918-932 37-51 (223)
312 PRK13894 conjugal transfer ATP 33.0 41 0.00089 38.9 3.7 18 918-935 156-173 (319)
313 PHA02562 46 endonuclease subun 33.0 1.1E+03 0.023 29.6 27.2 19 377-395 308-326 (562)
314 PRK03839 putative kinase; Prov 32.9 28 0.00062 36.4 2.2 18 918-935 8-25 (180)
315 TIGR03346 chaperone_ClpB ATP-d 32.9 1E+02 0.0023 41.0 7.9 107 918-1037 603-717 (852)
316 TIGR00235 udk uridine kinase. 32.7 29 0.00062 37.4 2.3 18 918-935 14-31 (207)
317 PRK13764 ATPase; Provisional 32.7 29 0.00062 43.6 2.5 32 1251-1282 237-269 (602)
318 TIGR00959 ffh signal recogniti 32.7 2.2E+02 0.0047 34.5 9.8 90 918-1007 107-207 (428)
319 PRK06547 hypothetical protein; 32.7 29 0.00062 36.2 2.2 17 918-934 23-39 (172)
320 PRK00091 miaA tRNA delta(2)-is 32.6 32 0.00069 39.5 2.7 63 918-981 12-87 (307)
321 PRK11388 DNA-binding transcrip 32.5 44 0.00096 42.9 4.3 37 1246-1282 324-360 (638)
322 COG1348 NifH Nitrogenase subun 32.5 49 0.0011 35.8 3.7 45 920-964 11-55 (278)
323 PRK00411 cdc6 cell division co 32.5 79 0.0017 37.8 6.3 35 918-952 63-97 (394)
324 cd00820 PEPCK_HprK Phosphoenol 32.3 26 0.00057 33.3 1.6 14 918-931 23-36 (107)
325 TIGR03545 conserved hypothetic 32.3 7.5E+02 0.016 31.1 14.6 22 281-302 191-212 (555)
326 PF15397 DUF4618: Domain of un 32.2 7.5E+02 0.016 27.6 19.0 24 273-296 87-110 (258)
327 KOG0744|consensus 32.2 26 0.00056 39.7 1.8 18 918-935 185-202 (423)
328 PF06414 Zeta_toxin: Zeta toxi 32.1 32 0.00069 36.8 2.5 30 918-951 23-52 (199)
329 PRK11176 lipid transporter ATP 32.1 7.1 0.00015 49.6 -3.0 97 918-1023 377-488 (582)
330 PF13086 AAA_11: AAA domain; P 32.0 48 0.001 35.9 4.0 17 918-934 25-41 (236)
331 PRK05480 uridine/cytidine kina 31.8 30 0.00064 37.3 2.2 17 918-934 14-30 (209)
332 CHL00081 chlI Mg-protoporyphyr 31.7 24 0.00052 41.2 1.5 129 918-1051 46-212 (350)
333 cd02020 CMPK Cytidine monophos 31.7 31 0.00068 34.4 2.2 17 918-934 7-23 (147)
334 TIGR03499 FlhF flagellar biosy 31.6 42 0.00091 38.2 3.5 31 918-948 202-234 (282)
335 COG3829 RocR Transcriptional r 31.6 45 0.00098 40.6 3.8 38 1245-1282 243-280 (560)
336 PRK13341 recombination factor 31.5 39 0.00085 43.7 3.5 17 918-934 60-76 (725)
337 PRK12377 putative replication 31.0 37 0.0008 37.7 2.8 20 1263-1282 94-113 (248)
338 PRK10923 glnG nitrogen regulat 30.9 48 0.001 40.7 4.1 37 1246-1282 137-173 (469)
339 TIGR02442 Cob-chelat-sub cobal 30.9 77 0.0017 40.6 6.0 124 918-1052 33-195 (633)
340 KOG1970|consensus 30.8 29 0.00063 42.1 2.0 30 918-951 118-147 (634)
341 cd00071 GMPK Guanosine monopho 30.8 30 0.00065 34.5 1.9 17 918-934 7-23 (137)
342 PRK06835 DNA replication prote 30.8 39 0.00084 39.3 3.0 21 1262-1282 175-195 (329)
343 COG3638 ABC-type phosphate/pho 30.7 40 0.00086 36.7 2.8 15 918-932 38-52 (258)
344 KOG0948|consensus 30.7 81 0.0017 39.7 5.6 65 973-1054 219-300 (1041)
345 KOG0733|consensus 30.7 24 0.00052 43.2 1.3 10 1273-1282 548-557 (802)
346 PF10498 IFT57: Intra-flagella 30.7 9.5E+02 0.021 28.3 17.1 145 210-391 206-351 (359)
347 cd03116 MobB Molybdenum is an 30.6 63 0.0014 33.2 4.2 24 918-941 9-32 (159)
348 PF13604 AAA_30: AAA domain; P 30.5 50 0.0011 35.3 3.6 22 918-939 26-47 (196)
349 PRK00131 aroK shikimate kinase 30.2 34 0.00073 35.3 2.2 17 918-934 12-28 (175)
350 PRK10416 signal recognition pa 30.1 46 0.001 38.5 3.5 31 918-948 122-152 (318)
351 PRK11331 5-methylcytosine-spec 30.1 37 0.0008 40.9 2.7 32 1247-1282 175-206 (459)
352 PF00270 DEAD: DEAD/DEAH box h 30.1 59 0.0013 33.2 4.1 40 918-957 22-61 (169)
353 TIGR03018 pepcterm_TyrKin exop 30.1 84 0.0018 33.8 5.4 42 918-959 44-86 (207)
354 KOG0989|consensus 30.1 39 0.00085 38.1 2.7 23 1260-1282 46-69 (346)
355 TIGR00017 cmk cytidylate kinas 29.7 34 0.00074 37.2 2.2 17 918-934 10-26 (217)
356 TIGR01618 phage_P_loop phage n 29.7 73 0.0016 34.7 4.7 64 918-994 20-89 (220)
357 KOG0971|consensus 29.7 1.4E+03 0.031 30.0 20.9 25 339-363 336-360 (1243)
358 PRK05439 pantothenate kinase; 29.5 50 0.0011 38.0 3.6 20 918-937 94-113 (311)
359 TIGR02782 TrbB_P P-type conjug 29.5 49 0.0011 38.0 3.5 19 918-936 140-158 (299)
360 COG5008 PilU Tfp pilus assembl 29.5 34 0.00073 37.6 2.0 34 1249-1282 105-139 (375)
361 PF13878 zf-C2H2_3: zinc-finge 29.5 25 0.00054 27.1 0.8 19 1036-1054 5-25 (41)
362 KOG0994|consensus 29.4 1.6E+03 0.034 30.5 25.8 6 164-169 1480-1485(1758)
363 TIGR02902 spore_lonB ATP-depen 29.3 34 0.00073 42.7 2.4 16 1267-1282 83-98 (531)
364 PF08580 KAR9: Yeast cortical 29.3 1.4E+03 0.029 29.7 27.4 86 272-358 197-295 (683)
365 cd01130 VirB11-like_ATPase Typ 29.3 30 0.00066 36.5 1.7 17 918-934 33-49 (186)
366 COG3604 FhlA Transcriptional r 29.2 35 0.00076 41.0 2.3 26 1257-1282 233-258 (550)
367 PF07724 AAA_2: AAA domain (Cd 29.0 56 0.0012 34.0 3.6 34 918-952 11-44 (171)
368 PF05496 RuvB_N: Holliday junc 29.0 29 0.00064 37.6 1.5 111 918-1054 58-177 (233)
369 CHL00195 ycf46 Ycf46; Provisio 28.9 28 0.00061 42.8 1.5 14 1269-1282 258-271 (489)
370 COG0630 VirB11 Type IV secreto 28.9 52 0.0011 38.0 3.6 25 1257-1282 131-155 (312)
371 PF10613 Lig_chan-Glu_bd: Liga 28.5 53 0.0011 28.2 2.7 25 951-977 41-65 (65)
372 PF10805 DUF2730: Protein of u 28.5 3E+02 0.0066 26.1 8.1 57 239-296 45-101 (106)
373 PF08298 AAA_PrkA: PrkA AAA do 28.5 54 0.0012 38.1 3.6 100 918-1058 96-195 (358)
374 PRK08116 hypothetical protein; 28.4 65 0.0014 36.3 4.3 14 1269-1282 113-126 (268)
375 PRK08181 transposase; Validate 28.2 61 0.0013 36.5 3.9 77 918-1009 114-194 (269)
376 KOG2129|consensus 28.0 1.1E+03 0.023 28.0 17.5 45 316-360 182-226 (552)
377 cd02021 GntK Gluconate kinase 27.9 35 0.00076 34.4 1.9 17 918-934 7-23 (150)
378 PF02367 UPF0079: Uncharacteri 27.9 37 0.00081 33.2 1.9 19 918-936 23-41 (123)
379 cd00464 SK Shikimate kinase (S 27.8 40 0.00087 34.0 2.3 17 918-934 7-23 (154)
380 COG1084 Predicted GTPase [Gene 27.8 7.4E+02 0.016 28.7 12.1 21 837-857 91-111 (346)
381 COG1118 CysA ABC-type sulfate/ 27.8 34 0.00073 38.7 1.7 17 918-934 36-52 (345)
382 PF08385 DHC_N1: Dynein heavy 27.8 1.3E+03 0.028 28.9 28.5 36 369-404 218-253 (579)
383 PRK05022 anaerobic nitric oxid 27.8 59 0.0013 40.4 4.1 27 1256-1282 196-222 (509)
384 PHA02562 46 endonuclease subun 27.7 1.3E+03 0.028 28.9 22.5 26 269-294 257-282 (562)
385 PRK04040 adenylate kinase; Pro 27.5 40 0.00088 35.7 2.3 18 918-935 10-27 (188)
386 CHL00175 minD septum-site dete 27.4 58 0.0013 36.9 3.7 42 919-960 25-66 (281)
387 KOG0517|consensus 27.1 2.1E+03 0.046 31.2 31.0 171 258-439 982-1160(2473)
388 COG1222 RPT1 ATP-dependent 26S 27.0 33 0.00071 39.5 1.5 16 1267-1282 182-197 (406)
389 PF00910 RNA_helicase: RNA hel 27.0 50 0.0011 31.3 2.6 19 918-936 6-24 (107)
390 cd02032 Bchl_like This family 26.8 60 0.0013 36.5 3.6 31 920-950 10-40 (267)
391 KOG1942|consensus 26.8 45 0.00097 37.1 2.4 16 1267-1282 61-76 (456)
392 PRK02496 adk adenylate kinase; 26.7 42 0.00092 35.2 2.3 17 918-934 9-25 (184)
393 TIGR02524 dot_icm_DotB Dot/Icm 26.7 41 0.00088 39.6 2.3 19 918-936 142-160 (358)
394 PRK10536 hypothetical protein; 26.7 56 0.0012 36.3 3.2 25 1257-1282 62-86 (262)
395 cd02033 BchX Chlorophyllide re 26.6 75 0.0016 36.9 4.4 43 918-960 39-81 (329)
396 PF00435 Spectrin: Spectrin re 26.4 4.8E+02 0.01 23.5 9.6 62 371-434 37-98 (105)
397 COG0378 HypB Ni2+-binding GTPa 26.3 49 0.0011 34.9 2.5 19 918-936 21-39 (202)
398 COG4136 ABC-type uncharacteriz 26.3 57 0.0012 32.8 2.8 18 918-935 36-53 (213)
399 cd07664 BAR_SNX2 The Bin/Amphi 26.3 9E+02 0.02 26.6 18.0 67 368-436 76-143 (234)
400 COG1124 DppF ABC-type dipeptid 26.3 38 0.00083 37.0 1.8 16 918-933 41-56 (252)
401 TIGR00176 mobB molybdopterin-g 26.3 64 0.0014 33.0 3.4 22 918-939 7-28 (155)
402 PTZ00202 tuzin; Provisional 26.2 30 0.00066 41.2 1.1 36 918-960 294-329 (550)
403 COG1842 PspA Phage shock prote 26.1 8.9E+02 0.019 26.5 17.3 29 368-396 159-187 (225)
404 cd03243 ABC_MutS_homologs The 26.0 1.8E+02 0.0038 31.1 7.0 82 918-1004 37-129 (202)
405 TIGR01359 UMP_CMP_kin_fam UMP- 26.0 42 0.00091 35.1 2.1 17 918-934 7-23 (183)
406 cd00550 ArsA_ATPase Oxyanion-t 26.0 53 0.0011 36.7 3.0 40 919-959 9-48 (254)
407 TIGR00150 HI0065_YjeE ATPase, 26.0 43 0.00093 33.3 1.9 19 918-936 30-48 (133)
408 PRK10751 molybdopterin-guanine 25.9 49 0.0011 34.5 2.4 21 918-938 14-34 (173)
409 PF00406 ADK: Adenylate kinase 25.8 48 0.001 33.5 2.4 86 918-1009 4-97 (151)
410 cd01127 TrwB Bacterial conjuga 25.8 78 0.0017 38.2 4.6 38 918-957 50-87 (410)
411 COG2262 HflX GTPases [General 25.7 73 0.0016 37.5 4.0 74 919-1008 201-294 (411)
412 PRK05541 adenylylsulfate kinas 25.6 49 0.0011 34.5 2.5 19 918-936 15-33 (176)
413 TIGR03819 heli_sec_ATPase heli 25.6 52 0.0011 38.5 2.9 24 1259-1282 167-190 (340)
414 TIGR02016 BchX chlorophyllide 25.6 71 0.0015 36.6 4.0 42 919-960 9-50 (296)
415 PF03205 MobB: Molybdopterin g 25.6 72 0.0016 32.0 3.5 24 918-941 8-31 (140)
416 PF00005 ABC_tran: ABC transpo 25.6 36 0.00078 33.6 1.4 17 918-934 19-35 (137)
417 PRK09546 zntB zinc transporter 25.6 1.1E+03 0.023 27.3 18.8 84 221-311 142-227 (324)
418 COG0194 Gmk Guanylate kinase [ 25.4 45 0.00097 35.0 2.0 17 918-934 12-28 (191)
419 COG2805 PilT Tfp pilus assembl 25.2 67 0.0015 36.3 3.4 67 918-996 133-207 (353)
420 cd03238 ABC_UvrA The excision 25.2 41 0.0009 35.2 1.8 14 918-931 29-42 (176)
421 PRK09825 idnK D-gluconate kina 25.1 45 0.00097 34.9 2.1 17 918-934 11-27 (176)
422 PF01583 APS_kinase: Adenylyls 25.1 69 0.0015 32.8 3.3 23 919-941 11-33 (156)
423 PRK15177 Vi polysaccharide exp 25.1 40 0.00087 36.5 1.8 16 918-933 21-36 (213)
424 PF13479 AAA_24: AAA domain 25.1 1.1E+02 0.0023 33.2 5.1 66 918-994 11-76 (213)
425 KOG0731|consensus 25.1 35 0.00075 43.6 1.4 12 1271-1282 345-356 (774)
426 KOG4460|consensus 25.1 1.3E+03 0.029 28.2 19.7 73 221-293 562-635 (741)
427 cd02034 CooC The accessory pro 25.1 82 0.0018 30.5 3.7 32 919-950 8-39 (116)
428 KOG2273|consensus 25.0 1.4E+03 0.03 28.3 15.5 15 310-324 278-292 (503)
429 PRK13975 thymidylate kinase; P 24.9 48 0.001 35.2 2.3 18 918-935 10-27 (196)
430 PRK03992 proteasome-activating 24.9 36 0.00079 40.7 1.5 13 1270-1282 165-177 (389)
431 PRK06761 hypothetical protein; 24.8 47 0.001 37.6 2.2 28 918-945 11-38 (282)
432 PRK13705 plasmid-partitioning 24.8 1.5E+02 0.0032 35.5 6.6 34 918-951 115-149 (388)
433 TIGR03263 guanyl_kin guanylate 24.7 40 0.00086 35.2 1.6 17 918-934 9-25 (180)
434 cd03222 ABC_RNaseL_inhibitor T 24.7 40 0.00086 35.4 1.6 17 918-934 33-49 (177)
435 COG1221 PspF Transcriptional r 24.7 56 0.0012 38.8 2.9 26 1257-1282 88-113 (403)
436 PRK13657 cyclic beta-1,2-gluca 24.6 20 0.00042 45.7 -0.9 17 918-934 369-385 (588)
437 cd03271 ABC_UvrA_II The excisi 24.6 79 0.0017 35.4 4.0 19 918-936 29-48 (261)
438 PF08303 tRNA_lig_kinase: tRNA 24.6 47 0.001 34.1 2.0 15 918-932 7-21 (168)
439 PRK00300 gmk guanylate kinase; 24.5 44 0.00096 35.7 2.0 17 918-934 13-29 (205)
440 KOG0963|consensus 24.5 1.5E+03 0.032 28.5 25.4 34 448-481 319-352 (629)
441 TIGR02525 plasmid_TraJ plasmid 24.4 56 0.0012 38.7 2.9 21 1262-1282 141-161 (372)
442 PRK15455 PrkA family serine pr 24.3 49 0.0011 41.1 2.3 20 918-937 111-130 (644)
443 PRK13947 shikimate kinase; Pro 24.2 50 0.0011 34.1 2.2 18 918-935 9-26 (171)
444 TIGR00382 clpX endopeptidase C 24.1 42 0.00091 40.2 1.8 13 1270-1282 116-128 (413)
445 TIGR01166 cbiO cobalt transpor 24.1 43 0.00094 35.4 1.8 16 918-933 26-41 (190)
446 cd03226 ABC_cobalt_CbiO_domain 24.1 43 0.00093 35.9 1.7 16 918-933 34-49 (205)
447 PRK05342 clpX ATP-dependent pr 24.1 42 0.00092 40.3 1.8 14 1269-1282 107-120 (412)
448 cd03255 ABC_MJ0796_Lo1CDE_FtsE 24.1 43 0.00094 36.2 1.8 17 918-934 38-54 (218)
449 PF07889 DUF1664: Protein of u 24.0 7E+02 0.015 24.6 12.5 43 297-339 27-69 (126)
450 COG2256 MGS1 ATPase related to 24.0 53 0.0012 38.5 2.5 101 918-1055 56-162 (436)
451 PTZ00454 26S protease regulato 24.0 95 0.0021 37.2 4.7 37 898-934 160-203 (398)
452 COG2805 PilT Tfp pilus assembl 24.0 52 0.0011 37.1 2.3 32 1251-1282 105-137 (353)
453 cd03292 ABC_FtsE_transporter F 23.9 44 0.00095 36.0 1.8 16 918-933 35-50 (214)
454 COG2804 PulE Type II secretory 23.8 64 0.0014 39.2 3.2 28 972-1003 316-344 (500)
455 PF12252 SidE: Dot/Icm substra 23.8 1.9E+03 0.041 29.5 26.9 104 154-269 1100-1209(1439)
456 PF13476 AAA_23: AAA domain; P 23.8 56 0.0012 34.4 2.6 19 918-936 27-45 (202)
457 PRK08939 primosomal protein Dn 23.8 76 0.0017 36.5 3.8 14 1269-1282 155-168 (306)
458 PRK13851 type IV secretion sys 23.7 37 0.0008 39.7 1.2 17 918-934 170-186 (344)
459 PRK00889 adenylylsulfate kinas 23.7 72 0.0016 33.2 3.3 31 918-950 12-42 (175)
460 PLN02840 tRNA dimethylallyltra 23.6 65 0.0014 38.5 3.2 64 918-982 29-105 (421)
461 cd03225 ABC_cobalt_CbiO_domain 23.6 45 0.00097 35.9 1.8 17 918-934 35-51 (211)
462 cd03264 ABC_drug_resistance_li 23.6 45 0.00097 35.9 1.8 17 918-934 33-49 (211)
463 smart00763 AAA_PrkA PrkA AAA d 23.6 44 0.00095 39.1 1.7 14 1269-1282 77-90 (361)
464 KOG0058|consensus 23.6 9.1E+02 0.02 31.0 12.9 28 794-821 308-335 (716)
465 PRK04296 thymidine kinase; Pro 23.6 1.8E+02 0.0039 30.8 6.4 29 918-948 10-38 (190)
466 TIGR00960 3a0501s02 Type II (G 23.5 45 0.00097 36.1 1.7 17 918-934 37-53 (216)
467 PF01202 SKI: Shikimate kinase 23.5 52 0.0011 33.7 2.1 18 919-936 1-18 (158)
468 COG1125 OpuBA ABC-type proline 23.4 45 0.00098 36.7 1.7 16 918-933 35-50 (309)
469 COG4088 Predicted nucleotide k 23.4 59 0.0013 34.6 2.4 75 918-1006 9-90 (261)
470 PTZ00454 26S protease regulato 23.1 42 0.00091 40.2 1.5 15 1268-1282 177-191 (398)
471 PRK14493 putative bifunctional 23.0 83 0.0018 35.6 3.8 30 918-948 9-38 (274)
472 PF00356 LacI: Bacterial regul 23.0 9.7 0.00021 30.1 -2.6 15 1033-1047 4-18 (46)
473 PRK13185 chlL protochlorophyll 22.9 77 0.0017 35.6 3.6 31 920-950 12-42 (270)
474 PRK14532 adenylate kinase; Pro 22.9 50 0.0011 34.8 1.9 17 918-934 8-24 (188)
475 cd03246 ABCC_Protease_Secretio 22.8 50 0.0011 34.3 1.9 17 918-934 36-52 (173)
476 PHA02774 E1; Provisional 22.8 2.2E+02 0.0047 35.6 7.4 115 918-1069 442-582 (613)
477 TIGR02173 cyt_kin_arch cytidyl 22.8 51 0.0011 33.9 2.0 17 918-934 8-24 (171)
478 cd03229 ABC_Class3 This class 22.7 49 0.0011 34.6 1.8 17 918-934 34-50 (178)
479 cd03269 ABC_putative_ATPase Th 22.7 48 0.001 35.6 1.8 16 918-933 34-49 (210)
480 cd01129 PulE-GspE PulE/GspE Th 22.6 52 0.0011 37.0 2.1 17 918-934 88-104 (264)
481 TIGR01420 pilT_fam pilus retra 22.6 64 0.0014 37.8 2.9 22 1261-1282 113-134 (343)
482 cd02117 NifH_like This family 22.6 94 0.002 33.5 4.0 40 919-958 9-48 (212)
483 PRK14722 flhF flagellar biosyn 22.5 45 0.00097 39.4 1.6 17 1266-1282 133-149 (374)
484 TIGR03608 L_ocin_972_ABC putat 22.5 49 0.0011 35.4 1.8 17 918-934 32-48 (206)
485 PLN02165 adenylate isopentenyl 22.5 62 0.0013 37.5 2.6 62 918-979 51-125 (334)
486 PLN02748 tRNA dimethylallyltra 22.5 71 0.0015 38.9 3.3 64 918-982 30-106 (468)
487 cd03224 ABC_TM1139_LivF_branch 22.4 47 0.001 36.0 1.7 17 918-934 34-50 (222)
488 PF13191 AAA_16: AAA ATPase do 22.4 62 0.0014 33.6 2.6 20 918-937 32-51 (185)
489 PRK14531 adenylate kinase; Pro 22.3 58 0.0013 34.2 2.3 17 918-934 10-26 (183)
490 PF00448 SRP54: SRP54-type pro 22.3 93 0.002 33.2 3.8 31 918-948 9-39 (196)
491 TIGR02315 ABC_phnC phosphonate 22.3 49 0.0011 36.5 1.8 17 918-934 36-52 (243)
492 cd03262 ABC_HisP_GlnQ_permease 22.3 49 0.0011 35.6 1.8 17 918-934 34-50 (213)
493 COG3911 Predicted ATPase [Gene 22.2 51 0.0011 33.1 1.6 15 919-933 18-32 (183)
494 PF06564 YhjQ: YhjQ protein; 22.2 82 0.0018 34.8 3.4 30 920-949 12-41 (243)
495 PRK13900 type IV secretion sys 22.1 48 0.001 38.6 1.7 18 918-935 168-185 (332)
496 KOG0964|consensus 22.0 2E+03 0.043 29.1 22.7 268 216-484 673-991 (1200)
497 PRK14974 cell division protein 22.0 76 0.0017 37.0 3.3 22 918-939 148-169 (336)
498 PRK13341 recombination factor 21.9 65 0.0014 41.7 3.0 20 1263-1282 43-64 (725)
499 PF00437 T2SE: Type II/IV secr 21.9 48 0.001 37.3 1.7 20 918-937 135-154 (270)
500 cd03261 ABC_Org_Solvent_Resist 21.9 50 0.0011 36.2 1.8 16 918-933 34-49 (235)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.7e-81 Score=752.47 Aligned_cols=405 Identities=41% Similarity=0.760 Sum_probs=323.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHcCCccCCCchHHHHHHHHHHHHHhhc
Q psy9553 410 ELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMC 489 (1282)
Q Consensus 410 ~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~i~~f~~~l 489 (1282)
+|+++.+++++++.+|..+.+|....+.|+++||.++|++.+++.+..+.+.+.++++.+++++++.++++.|++|+.++
T Consensus 2 ~L~~l~~~l~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~v~~~l~~~i~~f~~~l 81 (408)
T PF08393_consen 2 ELEELEKELEPLKKLWSLISEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWPVYKELKKKIEEFKKYL 81 (408)
T ss_dssp -------------------------HHHHHH--TTT-----------------------------HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhc-CCcccCCccccHHHHHcCCccccHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccE
Q psy9553 490 PLLELMANKAMKPRHWQRIMEVTK-YNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHE 568 (1282)
Q Consensus 490 Pli~~L~~~~lk~RHW~~i~~~~g-~~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~ 568 (1282)
|+|..|+||+|++|||++|++++| .++ ++ .++||++|+++|+.+|.+.|.+|+..|++|+.||++|++|++.|++++
T Consensus 82 pli~~L~~~~mk~rHW~~l~~~~g~~~~-~~-~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~ 159 (408)
T PF08393_consen 82 PLIQDLRNPAMKPRHWKQLFQILGIQDF-PN-ESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNME 159 (408)
T ss_dssp HHHHHTTSTT--CHHHHHHHHCTT------T-TS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B
T ss_pred HHHHHhcCccchHHHHHHHHHHhccccc-cc-ccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhce
Confidence 999999999999999999999999 777 44 679999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q psy9553 569 LTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVF 648 (1282)
Q Consensus 569 f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~yLe~IF 648 (1282)
|++.+|++++.++|++ +++|++.|+||++.|++|++|||+++|+++|.+|+++|..++++|+.|..||++|+||+|||
T Consensus 160 f~~~~~~~~~~~il~~--~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if 237 (408)
T PF08393_consen 160 FEFVPYKDKDVFILKN--WDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIF 237 (408)
T ss_dssp -EEEEETTT-CEEEE---CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeccccchhheecc--hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988898874 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHHHHHHHHHHHhHHHHhhhccCCeeEe
Q psy9553 649 VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFF 728 (1282)
Q Consensus 649 ~~~dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~~Le~iqk~L~~yLe~KR~~FPRFyF 728 (1282)
+++||++|||.|+++|..|++.|+.+|+++.++|+|+.+|..++ +.+.|..+++.|+.|+|+|++|||+||..||||||
T Consensus 238 ~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyF 316 (408)
T PF08393_consen 238 SSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPD-LLEKLESINESLEKIQKSLNDYLESKREAFPRFYF 316 (408)
T ss_dssp TSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred cchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceee
Confidence 99999999999999999999999999999999999999998765 66789999999999999999999999999999999
Q ss_pred cChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEecccccccccCHHHHHHHHHHHHHHH
Q psy9553 729 VSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQS 808 (1282)
Q Consensus 729 LSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~v~~~g~ve~WL~~le~~m~~t 808 (1282)
|||+|||+|||+++||..+|+||+|||+||++|.|++++ ..|+||+|++||+|+|.+||.++|+||.||.+||.+|+.|
T Consensus 317 lsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~~~~-~~i~~~~s~~gE~~~l~~~v~~~~~ve~WL~~le~~m~~t 395 (408)
T PF08393_consen 317 LSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFDENN-NSITGMISAEGETLPLDKPVSIEGPVEEWLNELEEEMKST 395 (408)
T ss_dssp C-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-TTS-SEEEEEEETTS-EEEEEEEEESSS-HHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccch-hhhhhhcCCCCCeEEeCCcccCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997643 3599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy9553 809 LHSIIRTAYTSL 820 (1282)
Q Consensus 809 l~~~i~~~~~~~ 820 (1282)
|+..++.|+.+|
T Consensus 396 l~~~~~~~~~~y 407 (408)
T PF08393_consen 396 LKKQIRKCLEDY 407 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999988
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-40 Score=398.57 Aligned_cols=845 Identities=10% Similarity=-0.020 Sum_probs=535.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 313 YTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQ 392 (1282)
Q Consensus 313 ~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~ 392 (1282)
+....+...+.- +....+...-|.+.+.+ ++....=..+|.+.| ...|..++.++.++...+.-+..-+....+...
T Consensus 335 ~~~~sl~~sl~y-e~~~~~h~~~~~~a~~~-i~~i~~~t~s~~~~~-~~~p~~p~~s~~~~~~~~e~~~~~~~~~~~~~~ 411 (3164)
T COG5245 335 SEAMSLESSLFY-EFRGGEHLAGFYSAFGD-IKRILLFTWSFKKLG-TLLPSLPGYSSGGMDYGEEYRSLLWELGSEVGD 411 (3164)
T ss_pred chhHHHHHhHHH-HHhccchhhhHHHHHHH-HHHHHHHHHHHHHhc-cccCCCCCCCCcchhhHHHHHHHHHHHhHhcCC
Confidence 334444444433 44455555566666644 444443334555555 567888888887776544444333443333322
Q ss_pred HHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHcCCccCCCc
Q psy9553 393 TYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEW 472 (1282)
Q Consensus 393 ~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~i~~~~~~~~~~~~~l~k~l~~~ 472 (1282)
--....+.+-.+..--.++.....+.+.+.-+|+.+..-++.++.-..+||. |.+.....+..+.. ...+++.++ .
T Consensus 412 ~~s~~~~~~~~~~~~~~~~~~~v~~~k~~~~v~~~~~~~~e~i~~~~~t~~~--d~~~~~~~la~~l~-~~e~~r~vk-~ 487 (3164)
T COG5245 412 PDSGPVRKWMRKDLFDAKVRSGVSFGKQEEFVSDIFNITFERIHGMDPTTLE--DDEEDTPALAILLG-QEEAGRFVK-L 487 (3164)
T ss_pred CccHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhcCCCCcch--hhhhcCHHHHHHhc-chhhhhHHH-H
Confidence 2222222222222223456666777788888999999988888999999998 55555555555544 233444444 3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHhcCCCCchhhHHHHHHHhcCCcc----cCCccccHHHHHcCCccccHHHHHHHHHHhh
Q psy9553 473 PAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFE----LDSESFCLKNILEAPLLKCKEDIEDICISAM 548 (1282)
Q Consensus 473 ~~~~~l~~~i~~f~~~lPli~~L~~~~lk~RHW~~i~~~~g~~~~----~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~ 548 (1282)
..+..+-..+......-..+.+++..++| ||..+++ +|.-+- .+...+.|.+..-++.....=.+--+.+.|+
T Consensus 488 ~~~~~~fs~~n~l~~~~~~~~~~~~~~~k--~~~~v~r-~g~~~lq~~~~~~~~~~l~~~~~~~~~~~~l~l~~~~e~s~ 564 (3164)
T COG5245 488 CKIMRMFSFFNSLEMFSRRTLANRMAIVK--YLSSVVR-TGPLFLQRDFFGRMSELLMARDMFMEVDGVLRLFFGGEWSG 564 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 34455555555555555667778888877 9999999 774221 1112233433333333333334445556665
Q ss_pred hhHHHHHHHHHHHHhhcccEEEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHH
Q psy9553 549 KEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTN 628 (1282)
Q Consensus 549 ~E~~ie~~L~~i~~~W~~~~f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~ 628 (1282)
.++.++..+...|...+.+ +++.+-+.+.+..+-.|.++-| |+.. .+-+.+|...+
T Consensus 565 ---iv~~s~~r~~k~~~e~q~~-----------------~~irewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s 620 (3164)
T COG5245 565 ---IVQLSGIRRAKRCVERQID-----------------DEIREWCSSVLSDDFLEERAVR---VERG-ADGARRLRASS 620 (3164)
T ss_pred ---HHHHhhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhcc
Confidence 8888899999999876432 3455556666666667777665 4444 45667776665
Q ss_pred HHHHHHHHHHHHHHhhhhcccch-hhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHHHHHH
Q psy9553 629 EILERWLLVQNMWVYLEAVFVGG-DIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLEL 707 (1282)
Q Consensus 629 ~~l~~w~~vQ~~W~yLe~IF~~~-dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~~Le~ 707 (1282)
++=- -.|+-+..+..+- ||+.-+|.+..+|.+....+|.|.+++..-...+.....+.. +.|.-..+.|+.
T Consensus 621 ~~~v------~~~ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~~~~i~~i~~~~~--d~l~l~~~~~~~ 692 (3164)
T COG5245 621 GSPV------LRRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDVG--DDLDLFYKEMDQ 692 (3164)
T ss_pred CCcH------HHHHHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcccchhheeeccCC--chHHHHHHHHHH
Confidence 5322 5799999998764 999999999999999999999999988776555554433321 236777889999
Q ss_pred HHHHHhHHHHhhhccCCeeEecChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEecccc
Q psy9553 708 CQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERA 787 (1282)
Q Consensus 708 iqk~L~~yLe~KR~~FPRFyFLSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~ 787 (1282)
+.-+|+.+|+.+|+.||| |+.++||+++++.+++-..+-+++.|+|..+....|-++ .|+|.-+-+||...+..-
T Consensus 693 v~~si~~~l~~~~r~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~~~~~~---~i~~~~~~~~~~~~~~~~ 767 (3164)
T COG5245 693 VFMSIEKVLGLRWREVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSS---RIQKKEPFSLDSEAYVGF 767 (3164)
T ss_pred HHHHHHHHHHHHHHhhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHH---HhccCCCccchHHhhhhh
Confidence 999999999999999999 999999999999999999999999999999988776443 599999999999888877
Q ss_pred ccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHhcCCchhHHHHHHHhhHHHHHHHHHhchhhHHHH
Q psy9553 788 VRAEG--SVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMM 865 (1282)
Q Consensus 788 v~~~g--~ve~WL~~le~~m~~tl~~~i~~~~~~~~~~~~~~~~wi~~~p~Qvvl~~~qi~wT~~ve~al~~~~~~~~~~ 865 (1282)
+.+.. .|-.|++ ..|- ++-.+...|+....+.. .-.-.+.+|-.|..++..| .||..+|.||... +
T Consensus 768 ~~l~~~~~~~~~in---~s~~-~v~sq~~~~~~~~~~~~-d~~~~vs~~~~~~~~l~~~-~~~~~~e~c~~~~------~ 835 (3164)
T COG5245 768 FRLYEKSIVIRGIN---RSMG-RVLSQYLESVQEALEIE-DGSFFVSRHRVRDGGLEKG-RGCDAWENCFDPP------L 835 (3164)
T ss_pred hhhHHHHHHHHHhh---hHHH-HHHHHHHHHHHHHhcCC-cceEEEeeeehhhcccccc-cchHHHHHhcCch------H
Confidence 77754 6789999 4444 56666777877664422 2234577899999999999 9999999999752 1
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHhHHhHHHHHHHHHHHHhhh---------------------------------
Q psy9553 866 SETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDIL--------------------------------- 912 (1282)
Q Consensus 866 ~~~~~~~~~~l~~l~~~~~~~l~~~~r~k~~~Li~i~vh~rDiv~~l--------------------------------- 912 (1282)
.+|. ..++..+..-.+.-.....+++.++..+-.|.-.|+..+
T Consensus 836 s~y~----~~~~~~~~~~~~~~~d~v~k~l~~~~~~~~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l~~~~~~~~s~ 911 (3164)
T COG5245 836 SEYF----RILEKIFPSEEGYFFDEVLKRLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSS 911 (3164)
T ss_pred HHHH----HHHHHhcccccccchHHHHHhcCchhhHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhheEeechh
Confidence 1111 111111111111112223344444444444444444433
Q ss_pred -----------------------------------------------------------------------CC-------
Q psy9553 913 -----------------------------------------------------------------------GP------- 914 (1282)
Q Consensus 913 -----------------------------------------------------------------------GP------- 914 (1282)
||
T Consensus 912 y~~~~~f~~~~ip~~~~~~~~~~~~~~~l~~a~~~~~c~f~~t~~s~~~~~~~~~~gri~d~~~~~sri~~g~~~~~~~g 991 (3164)
T COG5245 912 YRSAEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRFVDTENSRVYGMLVAGKGRIYDGTEPRSRIEAGPICEEERG 991 (3164)
T ss_pred hHHHHHHHhcCCChhheechhhhhhHHHHHHHHHHHHheecCCCCceeHHHHhcCCCeeecCCChhhhhhccceehhhcc
Confidence 33
Q ss_pred ----------------------------------------------------------CC-----------C--------
Q psy9553 915 ----------------------------------------------------------EE-----------V-------- 917 (1282)
Q Consensus 915 ----------------------------------------------------------en-----------i-------- 917 (1282)
|| +
T Consensus 992 ~~e~~~lde~~~~i~~~~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~r~~~~e~~~~a~~~f~~~~p~g~i~~~ 1071 (3164)
T COG5245 992 TEESALLDEISRTILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINERNIVLEIGRRALDMFLSNIPFGAIKSR 1071 (3164)
T ss_pred chhHHHHHHHHHHHhhhHHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecchhhHHHHHHHHHHHHHhcCCchhHHHH
Confidence 00 0
Q ss_pred --------------------------------------------------------------------------------
Q psy9553 918 -------------------------------------------------------------------------------- 917 (1282)
Q Consensus 918 -------------------------------------------------------------------------------- 917 (1282)
T Consensus 1072 ~~sl~~~i~~f~~~~~~~~~~~~~~~f~~~~~~l~~~~~~l~e~~e~~~~i~~~~~lp~i~dtl~e~~~~~da~~~~~~~ 1151 (3164)
T COG5245 1072 RESLDREIGAFNNEVDGIAREEDELMFYPMFKSLKAKHRMLEEKTEYLNKILSITGLPLISDTLRERIDTLDAEWDSFCR 1151 (3164)
T ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHhhcchHHHHhhHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhH
Confidence
Q ss_pred --------------------------------------CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 918 --------------------------------------QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 --------------------------------------~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
..|+|||..|+.... -++.....|++. -+
T Consensus 1152 ~s~~~~~~~s~q~sg~~~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d---~~~h~~~~yv~~----------~~ 1218 (3164)
T COG5245 1152 ISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACD---YLWHVKSPYVKK----------KY 1218 (3164)
T ss_pred HHHHHHHHhhccccCccHHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhc---cccccCchhhHH----------HH
Confidence 112666666555444 233333344444 15
Q ss_pred ecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC
Q psy9553 960 LDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038 (1282)
Q Consensus 960 ~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~ 1038 (1282)
|| +|-||+ |+|+.+.|+-... -.+.+-|.+||. ++|.||+|+||||++++|+||| +++|| +|.
T Consensus 1219 ~~-a~~e~r-~~f~~~~r~d~~~~~~~s~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge~-------~v~~~--nl~ 1282 (3164)
T COG5245 1219 FD-ADMELR-QFFLMFNREDMEARLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NLG 1282 (3164)
T ss_pred hh-hhHHHH-HHHHHHhHHhhhhhhccceEEEehHH-----HHHHHHhhhccceeeeccCCCc-------eEEEe--eCC
Confidence 66 578999 9999999965433 345688999998 9999999999999999999999 89999 888
Q ss_pred CCCccchhcccccccCCCCCCcHHHHHHHhccCCh-------------HHHHHHHHHHHhhhHHHHHHHhhccccccccc
Q psy9553 1039 NASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSA-------------KEASVFHHLFEESFPVLYAWGAANLSYVMKVL 1105 (1282)
Q Consensus 1039 ~asPAtvSRcgmvy~~~~~~~~~~~~~swl~~~~~-------------~~~~~l~~l~~~~~~~~l~~~~~~~~~~~~~~ 1105 (1282)
..||||.|||.-|.+-..++-...+..-+..-.. .......++...++..|+.|-.. ..+++.
T Consensus 1283 -s~~~~v~rc~~~~ds~~~~St~~~~~~~lg~T~~~Ld~~ld~fs~~~~~~~~~de~~m~~~a~~~~fs~d-l~hI~~-- 1358 (3164)
T COG5245 1283 -SIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLDECLDFFSCFEEVQKEIDELSMVFCADALRFSAD-LYHIVK-- 1358 (3164)
T ss_pred -CccchhheeeeeecccchhccchhhHHhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHhh--
Confidence 9999999999999998777766666554432210 01112333344444445544321 112222
Q ss_pred hHHHHHHHHHHHhhccCCCCCCccccccccCCCCCCCCCCcchhhhhhhhhhccCCchHHHHHHHHHHHHHHhccccCCc
Q psy9553 1106 QVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELP 1185 (1282)
Q Consensus 1106 ~~~~v~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~iW~~gg~l~~~ 1185 (1282)
++.|..++-++..... +-.+..+... ..........+.+..-.++.|.+.|.-+.+
T Consensus 1359 ----~rrF~~~~~~~~~s~~-----------------l~~~s~~~~~---~L~~K~l~~~mk~~I~~vL~~~~~gD~~~e 1414 (3164)
T COG5245 1359 ----ERRFSGVLAGSDASES-----------------LGGKSIELAA---ILEHKDLIVEMKRGINDVLKLRIFGDKCRE 1414 (3164)
T ss_pred ----hhhhhhhhhhhHhHHH-----------------HhhhHHHHHH---hcccHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2233333333321110 0000011100 000111234667777888889999999999
Q ss_pred chhhHHHHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCccccccccCCCCCCCCCCCCCCcccccchhHHHHHHHHHH
Q psy9553 1186 GRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNC 1265 (1282)
Q Consensus 1186 ~r~~f~~~~~~~~~~~~~~p~~~~~~~~~v~dy~~~~~~~w~~W~~~~~~~~~~~~~~~~~~~~~vpt~dt~r~~~l~~~ 1265 (1282)
+|.+|-.++-.-+. .++|....-..-.+.++-++..- ..|.+ ++.++.......--.++++||.||+|+.-+..-
T Consensus 1415 s~~rf~~~~~~~~~--~dl~e~sdye~~~i~~f~is~~~--~~~~~-Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~ 1489 (3164)
T COG5245 1415 STPRFYLISDGDLI--KDLNERSDYEEMLIMMFNISAVI--TNNGS-IAGFELRGERVMLRKEVVIPTSDTGFVDSFSNE 1489 (3164)
T ss_pred cchhHHHhhhhhhh--hccchhhhhHHHHHhhcccceEe--ecccc-cCCceechhhhcccCCeecccccchhHHHHHHH
Confidence 99999998887765 23443210012233444444211 12332 233333222221123899999999999999999
Q ss_pred HHhcCCcEEEecCCCCC
Q psy9553 1266 IAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1266 ~~~~~~~~ll~G~~Gt~ 1282 (1282)
.++..+.+++|||||+|
T Consensus 1490 ~lnt~R~~i~cGppGSg 1506 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSG 1506 (3164)
T ss_pred HHhccceEEEECCCCCc
Confidence 99999999999999998
No 3
>KOG3595|consensus
Probab=98.97 E-value=5.9e-10 Score=150.45 Aligned_cols=100 Identities=38% Similarity=0.765 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhccccCCcchhhHHHHHHHHhhcccCCCCCCCCCCCceEEEEEcC-CCCccccccccCCCCCCCCC
Q psy9553 1164 EHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVND-EGGWEPWSSMVNTYSYPENS 1242 (1282)
Q Consensus 1164 ~~~~~~f~fa~iW~~gg~l~~~~r~~f~~~~~~~~~~~~~~p~~~~~~~~~v~dy~~~~-~~~w~~W~~~~~~~~~~~~~ 1242 (1282)
.++..+|+||++|++||+++.++|.+|..|++..+. ++++||++. .+.|.+|.+.++ +...++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (1395)
T KOG3595|consen 39 SHLERLFLFALIWALGGDLDADSREKFREFLRRLIN--------------IIDLYYIDEEIGDWEPWIDKVP-FELLEDH 103 (1395)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh--------------hhhheeeeeccccccchhhhCc-ccccccc
Confidence 478999999999999999999999999999998853 566788775 689999999999 7655543
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1243 TPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1243 ~~~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+ +++|||+||+|+.++++.++.+++|+++|||+|||
T Consensus 104 --~--~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~g 139 (1395)
T KOG3595|consen 104 --E--DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTG 139 (1395)
T ss_pred --c--ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCC
Confidence 2 99999999999999999999999999999999998
No 4
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.63 E-value=6.1e-08 Score=97.98 Aligned_cols=118 Identities=26% Similarity=0.274 Sum_probs=93.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeee-ccCCCCcccccceecC--CCCccccchHHHHHHHHhccCCCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRM-NPKAITAAQMFGRLDV--ATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~i-npk~i~~~~LyG~~d~--~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG 994 (1282)
|+|+|||++.+.+++++ + ...+.+ -+...+.++|+|.+++ ...+|.||.+...++ ...|+++|+
T Consensus 7 ~~G~GKt~l~~~la~~~---~--~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--------~~~il~lDE 73 (139)
T PF07728_consen 7 PPGTGKTTLARELAALL---G--RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--------KGGILVLDE 73 (139)
T ss_dssp SSSSSHHHHHHHHHHHH---T--CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--------EEEEEEESS
T ss_pred CCCCCHHHHHHHHHHHh---h--cceEEEEeccccccccceeeeeeccccccccccccccccc--------ceeEEEECC
Confidence 78999999999999998 2 233333 4455788999999996 667899999988777 468999999
Q ss_pred C--CChhhhhhhhhhccCCccccccCCCeeecCCC------CeEEEecCCCC----CCCccchhcc
Q psy9553 995 P--VDSIWIENLNSVLDDNRTLTLANGDRLSMALA------VKIIFEPHNID----NASPATVSRN 1048 (1282)
Q Consensus 995 ~--vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~------~~~~FEv~dL~----~asPAtvSRc 1048 (1282)
- .++..++.|+++||+++......++++..+++ .++|+-..+-. ..+||+.+||
T Consensus 74 in~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp CGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 3 36999999999999999988888888888774 89999988777 8999999997
No 5
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.38 E-value=4.9e-08 Score=121.35 Aligned_cols=134 Identities=28% Similarity=0.526 Sum_probs=109.9
Q ss_pred CCCCChhHHHHHHHH--HHHhcCCC-------------ceee--eeccCCCCcccccceecCCCCccccchHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMA--ALSEVEEP-------------HREM--RMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTL 980 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~--a~~~~~~~-------------~~~~--~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~ 980 (1282)
|.+.=|+++.++|.- ++...|.. .+.+ -+|| .++-|++|.-|..|.+|.|-+...++|.-.
T Consensus 1814 ~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~--~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~ 1891 (3164)
T COG5245 1814 EAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNP--RNMREIFGHRDELTGDFRDSLKVQDLRRNI 1891 (3164)
T ss_pred ceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCc--cchhhhhcccccchhhHHHHHHHHHHhccc
Confidence 555778888888754 33333211 1111 2777 566799999999999999999999888644
Q ss_pred ccCCCCceEEEEcC-CCChhhhhhhhhhccCCccccccCC-CeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 981 KLKPGDHVWLVLDG-PVDSIWIENLNSVLDDNRTLTLANG-DRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 981 ~~~~~~~~WivfDG-~vd~~WiE~mnsvlDdnk~L~L~ng-eri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
. .+--.|+|||| |+-+.|+|-||++||.|..+||.+| ||+++|.|.|.+||-..|..-||||+.|-=|+||..
T Consensus 1892 ~--~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~ 1966 (3164)
T COG5245 1892 H--GGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEE 1966 (3164)
T ss_pred c--CCceEEEEecCCccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHh
Confidence 2 23347999999 9999999999999999999999999 899999999999999999999999999999998764
No 6
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.72 E-value=0.00024 Score=79.79 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=89.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecC--------------------CCCccccchHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDV--------------------ATNDWTDGIFSALWR 977 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~--------------------~t~eW~dG~~~~~~r 977 (1282)
|+|+|||++.+.|++++ |.+...+..++ .++..+|.|.... ...+|.||.+...++
T Consensus 29 ~~GtGKT~lA~~la~~l---g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~ 104 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKR---DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR 104 (262)
T ss_pred CCCCCHHHHHHHHHHHh---CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHH
Confidence 79999999999998754 55554444454 4555677665432 223799998876554
Q ss_pred HHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccC----CCeeecCCCCeEEEecCCCC------CCCccch
Q psy9553 978 KTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLAN----GDRLSMALAVKIIFEPHNID------NASPATV 1045 (1282)
Q Consensus 978 ~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~n----geri~l~~~~~~~FEv~dL~------~asPAtv 1045 (1282)
+ ..|+++|. -.++.--..|+++|++ +.+++++ |+.++.+++.++|+ ++|-. .-++|..
T Consensus 105 ~--------g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIa-TsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 105 E--------GFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIF-TSNPVEYAGVHETQDALL 174 (262)
T ss_pred c--------CCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEE-eeCCccccceecccHHHH
Confidence 2 46999998 4567788889999997 6788886 46788999999888 44422 2267899
Q ss_pred hcccccccCC
Q psy9553 1046 SRNGMVYMSS 1055 (1282)
Q Consensus 1046 SRcgmvy~~~ 1055 (1282)
.||-.++++.
T Consensus 175 ~R~~~i~i~~ 184 (262)
T TIGR02640 175 DRLITIFMDY 184 (262)
T ss_pred hhcEEEECCC
Confidence 9998888874
No 7
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.62 E-value=0.0011 Score=84.82 Aligned_cols=104 Identities=27% Similarity=0.431 Sum_probs=82.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC-cccccceecC---CCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT-AAQMFGRLDV---ATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~-~~~LyG~~d~---~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+.||||+.+.-|++-.. ++.++||----| .+|-.|.+-. -+-+++.|++--.+|+ ..|||+|
T Consensus 896 pTSSGKTSMI~yla~~tg-----hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~--------GyWIVLD 962 (4600)
T COG5271 896 PTSSGKTSMILYLARETG-----HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR--------GYWIVLD 962 (4600)
T ss_pred CCCCCcchHHHHHHHHhC-----ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc--------CcEEEee
Confidence 788999999999998653 566777665555 4777787732 2247999999999987 4799999
Q ss_pred C----CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC
Q psy9553 994 G----PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN 1036 (1282)
Q Consensus 994 G----~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d 1036 (1282)
- |-| =.|.||-+||||+-|-.|--+-+-.|-.--++|=+++
T Consensus 963 ELNLApTD--VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 963 ELNLAPTD--VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred ccccCcHH--HHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 6 444 3799999999999999999998888877778887766
No 8
>PHA02244 ATPase-like protein
Probab=97.53 E-value=0.00022 Score=81.49 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV- 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v- 996 (1282)
|+|+|||++.+.++.++ +. ..+.+| .-++...|.|..+. ...|.||-|...+++ ..|+++|.-.
T Consensus 127 ppGtGKTtLA~aLA~~l---g~--pfv~In-~l~d~~~L~G~i~~-~g~~~dgpLl~A~~~--------GgvLiLDEId~ 191 (383)
T PHA02244 127 GAGSGKNHIAEQIAEAL---DL--DFYFMN-AIMDEFELKGFIDA-NGKFHETPFYEAFKK--------GGLFFIDEIDA 191 (383)
T ss_pred CCCCCHHHHHHHHHHHh---CC--CEEEEe-cChHHHhhcccccc-cccccchHHHHHhhc--------CCEEEEeCcCc
Confidence 79999999999998875 33 345566 22334567787654 358999988776542 3599999822
Q ss_pred -ChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC--------C---CCCCccchhcccccccCC
Q psy9553 997 -DSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN--------I---DNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 997 -d~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d--------L---~~asPAtvSRcgmvy~~~ 1055 (1282)
.+.=...||++||+. .+.++ |+++..++++++|+=... + ..-.||+++|+-.|+++-
T Consensus 192 a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 192 SIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred CCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCC
Confidence 355568899999875 67776 778999999999984332 1 455899999999999884
No 9
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.32 E-value=0.00053 Score=77.72 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceec----CCC--CccccchHHHHHHHHhccCCCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLD----VAT--NDWTDGIFSALWRKTLKLKPGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d----~~t--~eW~dG~~~~~~r~~~~~~~~~~~Wiv 991 (1282)
|+|+|||++.+.|++.+. .+...+.++|- ++..+|.|..- ... .+|.||.|+..+|. ..|++
T Consensus 72 ~pGtGKTtla~~lA~~l~---~~~~rV~~~~~-l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~--------g~ill 139 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARLN---WPCVRVNLDSH-VSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH--------NVALC 139 (327)
T ss_pred CCCChHHHHHHHHHHHHC---CCeEEEEecCC-CChhhcCCCceeeccCCcceeEEecCcchhHHhC--------CeEEE
Confidence 799999999999999874 34333334444 56677888632 111 48999999887763 47999
Q ss_pred EcCCCC---hhhhhhhhhhccCCccccccC-CCeeecCCCCeEEE
Q psy9553 992 LDGPVD---SIWIENLNSVLDDNRTLTLAN-GDRLSMALAVKIIF 1032 (1282)
Q Consensus 992 fDG~vd---~~WiE~mnsvlDdnk~L~L~n-geri~l~~~~~~~F 1032 (1282)
||. +| |.=...+|++||+.+.|+++. |+.|.-.|+.+++.
T Consensus 140 lDE-in~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA 183 (327)
T TIGR01650 140 FDE-YDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA 183 (327)
T ss_pred ech-hhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE
Confidence 998 44 444566778999999999974 67777777777775
No 10
>KOG1808|consensus
Probab=96.48 E-value=0.0025 Score=85.62 Aligned_cols=108 Identities=26% Similarity=0.359 Sum_probs=86.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC-CCcccccc-eecCCCC--ccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA-ITAAQMFG-RLDVATN--DWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~-i~~~~LyG-~~d~~t~--eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|++||||++++=|++++.+ +...||=+. .+..++.| |+...++ .|++|++=..+|+ ..|||+|
T Consensus 448 ~tssGKtsii~~la~~~g~-----~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~--------G~~~vlD 514 (1856)
T KOG1808|consen 448 PTSSGKTSIIKELARATGK-----NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN--------GDWIVLD 514 (1856)
T ss_pred CcCcCchhHHHHHHHHhcc-----CceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh--------CCEEEec
Confidence 7999999999999999853 344454444 45688999 5555555 5999999888886 4699999
Q ss_pred C--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC
Q psy9553 994 G--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038 (1282)
Q Consensus 994 G--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~ 1038 (1282)
| =+-+.=+|.||-|||||+-|-+|.|.|.--+..+.|+|=+.+-.
T Consensus 515 ~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 515 ELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred cccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 9 23344589999999999999999999999998888998665543
No 11
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.88 E-value=7.5 Score=48.78 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9553 262 VRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLA 341 (1282)
Q Consensus 262 l~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~ 341 (1282)
+..+...+..+.+.+..++..+..+.+...-|..- ..+....+..+...+..+++.+.......-.. ...|+
T Consensus 96 f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~----e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a----~~~Le 167 (560)
T PF06160_consen 96 FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLES----EEKNREEIEELKEKYRELRKELLAHSFSYGPA----IEELE 167 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh----HHHHH
Confidence 34445555555555566666655555554444321 11222334444445555544444333332222 22233
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 342 DNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTY 394 (1282)
Q Consensus 342 ~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l 394 (1282)
+..+.+......|.+ +...| ++.+|-+.+..++..+..+....+.+
T Consensus 168 ~~L~~ie~~F~~f~~-lt~~G------D~~~A~eil~~l~~~~~~l~~~~e~I 213 (560)
T PF06160_consen 168 KQLENIEEEFSEFEE-LTENG------DYLEAREILEKLKEETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHHHHHHHH-HHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344333333332 22222 45667777777777777666665554
No 12
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=94.83 E-value=6.7 Score=41.88 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
.+...+..+...+.+....|... |.++.++...++.+..+..........++.+.....-|..-+..-.......+..
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~ 83 (213)
T cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEE 83 (213)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34556667777777777767553 4477888888888888877777777777777777666655443333444456788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQPR--FEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMW 388 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k~~--f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~ 388 (1282)
+...|..+...+......|+..... +...+.. +..-+...........|........+.+..++.+...+....
T Consensus 84 l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~----l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (213)
T cd00176 84 LNQRWEELRELAEERRQRLEEALDLQQFFRDADD----LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHE 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhch
Confidence 8999999998888777777654322 1111111 333333332222222222211123444556666667776666
Q ss_pred HHHHHHHHhhhhc-CCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy9553 389 RKLQTYQSGEELF-GLPTTDYPELAQIRKELNLLQKLYKLYND 430 (1282)
Q Consensus 389 ~~~~~l~~~e~lf-~l~~t~~~~L~~l~~el~~~~~lW~~~~~ 430 (1282)
...+.++.....+ ..... .....+...++.+..-|..+..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~l~~~~~~l~~ 200 (213)
T cd00176 160 PRLKSLNELAEELLEEGHP--DADEEIEEKLEELNERWEELLE 200 (213)
T ss_pred HHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 6666666543333 22222 1225566667666666665544
No 13
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.32 E-value=0.24 Score=58.84 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC--ceeeeeccCCCCcccccceecC--CCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP--HREMRMNPKAITAAQMFGRLDV--ATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~--~~~~~inpk~i~~~~LyG~~d~--~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||++.+.|+..+..-... ...+...| +.+-..+-|.+-| ....|.+|+|..+.+++..+ ...+.++|+|
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHp-sySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~-p~~~~vliID 279 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQ-SYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ-PEKKYVFIID 279 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecc-cccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc-ccCCcEEEEe
Confidence 89999999999999887531111 11222222 2222333322222 34578999999998887543 3456899999
Q ss_pred ----CCCChhhhhhhhhhccCCc-----ccccc----CCCeeecCCCCeEEEecC----CCCCCCccchhcccccccCCC
Q psy9553 994 ----GPVDSIWIENLNSVLDDNR-----TLTLA----NGDRLSMALAVKIIFEPH----NIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 994 ----G~vd~~WiE~mnsvlDdnk-----~L~L~----ngeri~l~~~~~~~FEv~----dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
|+++..+=|.+. +|+..+ .+.|+ +|+++.+|+|+++|==+. ++..-.+|.-=|-.+|.+.|.
T Consensus 280 EINRani~kiFGel~~-lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 280 EINRANLSKVFGEVMM-LMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred hhhccCHHHhhhhhhh-hccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCC
Confidence 477777766654 566332 23333 357999999999885442 233456777777777777763
No 14
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=92.11 E-value=4.3 Score=37.74 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy9553 231 RKKYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQV 308 (1282)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~ 308 (1282)
...+...++.+...+.+....|... |.+++++...+..+..+...+...+..++.+.+.-.-|...+..-++.....+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456778888888888888888443 67899999999999999999988999999999888888665533344445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy9553 309 DSLRYTWQKLLARAMTANVLLT 330 (1282)
Q Consensus 309 ~~l~~~w~~l~~~~~~~~~~l~ 330 (1282)
..+...|..+...+......|+
T Consensus 83 ~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 83 EELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 7888899988888777665543
No 15
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=91.80 E-value=4 Score=54.73 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcc-ccccee---cCCCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAA-QMFGRL---DVATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~-~LyG~~---d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|.|+|||-++.-|++-+ |+ +++.|.-.-+|=. -|-|.+ -|-+-||.-||++..+. ..+||.|-
T Consensus 157 ~~gsgksfLisel~~~~---G~--~iV~Ihl~e~TDak~LiGtYts~KpG~fEw~~GvL~~avv--------~G~WILf~ 223 (4600)
T COG5271 157 GRGSGKSFLISELCDEG---GQ--RIVEIHLREITDAKVLIGTYTSPKPGDFEWMKGVLIEAVV--------SGDWILFK 223 (4600)
T ss_pred CccccHHHHHHHHHHHh---Cc--eEEEEecccccCchheeeeccCCCCCceeeccchhhhhhh--------cCcEEEEe
Confidence 68899999999888755 32 2222222222221 134444 25678999999987543 25799997
Q ss_pred CCCChhh---hhhhhhhccCCccccccCCCeeecCCCCeEEEe
Q psy9553 994 GPVDSIW---IENLNSVLDDNRTLTLANGDRLSMALAVKIIFE 1033 (1282)
Q Consensus 994 G~vd~~W---iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FE 1033 (1282)
- +|-.= .--|=|+|---+++--+-||.|.-.++.+|+|=
T Consensus 224 ~-Idkap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~T 265 (4600)
T COG5271 224 R-IDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFT 265 (4600)
T ss_pred e-cccCchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEe
Confidence 4 44332 222346665555555577999999999999984
No 16
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=1.5 Score=52.23 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=87.1
Q ss_pred CCCCChhHHHHHHHHHHHhcC---CC--------------c-eeeeecc--CCCCcccccceecCCCCccccchHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE---EP--------------H-REMRMNP--KAITAAQMFGRLDVATNDWTDGIFSALWR 977 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~---~~--------------~-~~~~inp--k~i~~~~LyG~~d~~t~eW~dG~~~~~~r 977 (1282)
|.|+|||++.+.+++++..-. .+ | .++.+.| +++..++ +-.+++
T Consensus 44 p~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~----------------iR~l~~ 107 (394)
T PRK07940 44 PPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDE----------------VRELVT 107 (394)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHH----------------HHHHHH
Confidence 799999999999999985421 01 1 1234444 2222211 223344
Q ss_pred HHhccC-CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 978 KTLKLK-PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 978 ~~~~~~-~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.+...+ .+.++-+++|. +|..=.+.-|++|. +| | .-|+++.+|+=+.+.....|+-+|||=.|+|.+-
T Consensus 108 ~~~~~p~~~~~kViiIDe-ad~m~~~aanaLLk---~L-----E--ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~ 176 (394)
T PRK07940 108 IAARRPSTGRWRIVVIED-ADRLTERAANALLK---AV-----E--EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTP 176 (394)
T ss_pred HHHhCcccCCcEEEEEec-hhhcCHHHHHHHHH---Hh-----h--cCCCCCeEEEEECChHHChHHHHhhCeEEECCCC
Confidence 433222 34567888886 55554455555542 12 1 1356788999999988888999999999999865
Q ss_pred CCCcHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHH
Q psy9553 1057 GLDWSPIVAAWLRG---RSAKEASVFHHLFEESFPVLYAWG 1094 (1282)
Q Consensus 1057 ~~~~~~~~~swl~~---~~~~~~~~l~~l~~~~~~~~l~~~ 1094 (1282)
. ..-+..|+.. .+......+-.+.+-.+..++.++
T Consensus 177 ~---~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 177 S---VEAVAEVLVRRDGVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred C---HHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 2346778753 233333344445444455555554
No 17
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.90 E-value=1.1 Score=55.37 Aligned_cols=135 Identities=20% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcc---cccceecCCCCccccchHHHHHHHHhc-----cCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAA---QMFGRLDVATNDWTDGIFSALWRKTLK-----LKPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~---~LyG~~d~~t~eW~dG~~~~~~r~~~~-----~~~~ 985 (1282)
|.|+||||+.++|++++..... ++.. +-+-+.|..+ .++ ++|+.++ .||= -+|++.. ...+
T Consensus 46 p~G~GKTt~A~~lAk~l~c~~~~~~~pCg~-C~~C~~i~~g~~~d~~-eidaas~---~~v~--~iR~l~~~~~~~p~~~ 118 (509)
T PRK14958 46 TRGVGKTTISRILAKCLNCEKGVSANPCND-CENCREIDEGRFPDLF-EVDAASR---TKVE--DTRELLDNIPYAPTKG 118 (509)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCcccCCC-CHHHHHHhcCCCceEE-EEccccc---CCHH--HHHHHHHHHhhccccC
Confidence 6899999999999999965321 1000 0000001000 001 1233221 2221 1344332 1234
Q ss_pred CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC-CCcHHHH
Q psy9553 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG-LDWSPIV 1064 (1282)
Q Consensus 986 ~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~-~~~~~~~ 1064 (1282)
..+.+|+|. ||-.=-+..|..| |+|- ..|+++.|||=+.|...-.|.-.|||-.+.|.+-. -.+...+
T Consensus 119 ~~kV~iIDE-~~~ls~~a~naLL---k~LE-------epp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 119 RFKVYLIDE-VHMLSGHSFNALL---KTLE-------EPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHC 187 (509)
T ss_pred CcEEEEEEC-hHhcCHHHHHHHH---HHHh-------ccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence 578999998 6666666666665 2222 24789999998888888777779999999987532 2334445
Q ss_pred HHHhcc
Q psy9553 1065 AAWLRG 1070 (1282)
Q Consensus 1065 ~swl~~ 1070 (1282)
..++.+
T Consensus 188 ~~il~~ 193 (509)
T PRK14958 188 QHLLKE 193 (509)
T ss_pred HHHHHH
Confidence 555543
No 18
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.47 E-value=58 Score=40.99 Aligned_cols=155 Identities=14% Similarity=0.219 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHh-HHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy9553 259 LDDVRMIMELLKRIRDQ-EVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFE 337 (1282)
Q Consensus 259 leel~e~~~~i~~i~~~-~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~ 337 (1282)
+.++...++.+..+-.. ...+-.+++.+.+.|.-|..-|+.++..++. .....+...+.+....+.... .
T Consensus 203 ~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~------~~i~~i~~~l~~~~~~L~~l~---l 273 (560)
T PF06160_consen 203 TDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIE------EEIEQIEEQLEEALALLKNLE---L 273 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHHHHHHHHHHHHcCC---H
Confidence 44555555555544443 2356678888999999999888888764332 122233333333333333221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHH
Q psy9553 338 QDLADNLAQFRQDKVDYCHEYRTSG---PMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQI 414 (1282)
Q Consensus 338 ~~L~~~~~~f~~~i~~~~~~~~~~~---p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l 414 (1282)
.......+.+..+|..+.+.+.... +... -......+.+.........+..+.+.++ .-+.+....-.....+
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~-~~~~~l~~~l~~~~~~~~~l~~e~~~v~---~sY~L~~~e~~~~~~l 349 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKKYVE-KNLKELYEYLEHAKEQNKELKEELERVS---QSYTLNHNELEIVREL 349 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCchHHHHHHHH
Confidence 1222333344444444443332210 0000 0111222334444444444444444443 3356665555555666
Q ss_pred HHHHHHHHHHHH
Q psy9553 415 RKELNLLQKLYK 426 (1282)
Q Consensus 415 ~~el~~~~~lW~ 426 (1282)
.+++..+..-+.
T Consensus 350 ~~~l~~l~~~~~ 361 (560)
T PF06160_consen 350 EKQLKELEKRYE 361 (560)
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.12 E-value=0.89 Score=52.44 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=66.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|+|+|||++.+.++..+. .+ ...+ +|..... -|.+...++.. +....+++|. -
T Consensus 38 p~G~GKT~la~~ia~~~~---~~--~~~~----------~~~~~~~-----~~~l~~~l~~~-----~~~~vl~iDEi~~ 92 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMG---VN--LKIT----------SGPALEK-----PGDLAAILTNL-----EEGDVLFIDEIHR 92 (305)
T ss_pred CCCCCHHHHHHHHHHHhC---CC--EEEe----------ccchhcC-----chhHHHHHHhc-----ccCCEEEEehHhh
Confidence 789999999998887653 11 1111 2221111 12233444432 2345888885 3
Q ss_pred CChhhhhhhhhhccCCcccc-ccCC-----CeeecCCCCeEEEecCCCCCCCccchhccccc-ccCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLT-LANG-----DRLSMALAVKIIFEPHNIDNASPATVSRNGMV-YMSS 1055 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~-L~ng-----eri~l~~~~~~~FEv~dL~~asPAtvSRcgmv-y~~~ 1055 (1282)
+.+.-.|-+.++|++.+..- +.+| -++.+|+ ..++.-+......+|+-.||||++ .+++
T Consensus 93 l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~~l~~~l~sR~~~~~~l~~ 158 (305)
T TIGR00635 93 LSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAGMLTSPLRDRFGIILRLEF 158 (305)
T ss_pred hCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCccccCHHHHhhcceEEEeCC
Confidence 44455677778887766542 2222 1345555 567766777777889999999986 4664
No 20
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.97 E-value=27 Score=45.00 Aligned_cols=100 Identities=23% Similarity=0.443 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccccH
Q psy9553 370 PREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQK-LYKLYNDVIDRVSSYYDIPWGEVNI 448 (1282)
Q Consensus 370 ~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~-lW~~~~~~~~~~~~w~~~~~~~ld~ 448 (1282)
...++..+..+++++.-|+.+.-.+. -|-+..+|++++++++.++.+.. |++.| +
T Consensus 1126 ikK~ia~lnnlqqElklLRnEK~Rmh-----~~~dkVDFSDIEkLE~qLq~~~~kL~dAy-------------------l 1181 (1439)
T PF12252_consen 1126 IKKAIANLNNLQQELKLLRNEKIRMH-----SGTDKVDFSDIEKLEKQLQVIHTKLYDAY-------------------L 1181 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhc-----cCCCcccHHHHHHHHHHHHHhhhhhHHHH-------------------H
Confidence 45666666666666666665433333 35556789999999999877542 33332 2
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCchHHHHHHHHHHHHHhhcHHHHHhcCCCCch
Q psy9553 449 EEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKP 502 (1282)
Q Consensus 449 ~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~i~~f~~~lPli~~L~~~~lk~ 502 (1282)
.++..++..+. +..|+.+. .++..+..|...+--+..|+|+-+|.
T Consensus 1182 ~eitKqIsaLe---~e~PKnlt------dvK~missf~d~laeiE~LrnErIKk 1226 (1439)
T PF12252_consen 1182 VEITKQISALE---KEKPKNLT------DVKSMISSFNDRLAEIEFLRNERIKK 1226 (1439)
T ss_pred HHHHHHHHHHH---hhCCCchh------hHHHHHHHHHhhhhHHHHHHHHHhhc
Confidence 22333333332 22444432 78999999999999999999887654
No 21
>PLN03025 replication factor C subunit; Provisional
Probab=88.18 E-value=0.91 Score=52.74 Aligned_cols=113 Identities=20% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC----CCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK----PGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~----~~~~~WivfD 993 (1282)
|.|+||||+.+.+++++..-+....+.-+|+-. +-.-+++-..++..+... .+..+-|++|
T Consensus 42 p~G~GKTtla~~la~~l~~~~~~~~~~eln~sd---------------~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiD 106 (319)
T PLN03025 42 PPGTGKTTSILALAHELLGPNYKEAVLELNASD---------------DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILD 106 (319)
T ss_pred CCCCCHHHHHHHHHHHHhcccCccceeeecccc---------------cccHHHHHHHHHHHHhccccCCCCCeEEEEEe
Confidence 799999999999999874321111112233210 001112333333333221 2346788888
Q ss_pred CCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 994 GPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 994 G~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
- +|..=-..-|.++ +.+- ..+++++++|=..+.....|+-.|||-++.|.+-
T Consensus 107 E-~d~lt~~aq~aL~---~~lE-------~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 107 E-ADSMTSGAQQALR---RTME-------IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred c-hhhcCHHHHHHHH---HHHh-------cccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 5 5543322223331 2221 1345678888777777778899999999888753
No 22
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=87.28 E-value=1.3 Score=48.48 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|.|+|||+++|.|++++.+ . +++.|.- ..-.-..+++|++-++.. .-|.+||. ++
T Consensus 40 pagtGKtetik~La~~lG~---~--~~vfnc~---------------~~~~~~~l~ril~G~~~~----GaW~cfde-fn 94 (231)
T PF12774_consen 40 PAGTGKTETIKDLARALGR---F--VVVFNCS---------------EQMDYQSLSRILKGLAQS----GAWLCFDE-FN 94 (231)
T ss_dssp STTSSHHHHHHHHHHCTT-------EEEEETT---------------SSS-HHHHHHHHHHHHHH----T-EEEEET-CC
T ss_pred CCCCCchhHHHHHHHHhCC---e--EEEeccc---------------ccccHHHHHHHHHHHhhc----Cchhhhhh-hh
Confidence 6899999999999998753 2 3333421 122233578888877754 46999998 44
Q ss_pred hhhhhhhhhh-----------ccCCccccccCCCeeecCCCCeEEE
Q psy9553 998 SIWIENLNSV-----------LDDNRTLTLANGDRLSMALAVKIIF 1032 (1282)
Q Consensus 998 ~~WiE~mnsv-----------lDdnk~L~L~ngeri~l~~~~~~~F 1032 (1282)
-.=.+.|..| -..++..++ .|+.|++.+++.++.
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFi 139 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFI 139 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEE
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEE
Confidence 4333333322 235566666 589999999987663
No 23
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=86.84 E-value=0.93 Score=48.38 Aligned_cols=42 Identities=19% Similarity=0.024 Sum_probs=28.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL 960 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~ 960 (1282)
+.||||||..+.|++++...|..+. +.-.|.+-..++++..+
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g~~v~-~~~~~~~~~~~~~i~~~ 52 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLLQENGYDVL-FTREPGGTPIGEKIREL 52 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEE-EEeCCCCChHHHHHHHH
Confidence 5689999999999999987665432 33455544445544443
No 24
>PLN02842 nucleotide kinase
Probab=86.55 E-value=2.6 Score=51.21 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||..+.|++.+
T Consensus 5 ~PGSGKSTqa~~Lak~l 21 (505)
T PLN02842 5 APASGKGTQCELIVHKF 21 (505)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999876
No 25
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.18 E-value=1.9 Score=50.36 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|.|+|||++.+.++..+.. . ...++ |.... ..|.+..+++.. ....-+++|- -
T Consensus 59 ppG~GKT~la~~ia~~l~~---~--~~~~~----------~~~~~-----~~~~l~~~l~~l-----~~~~vl~IDEi~~ 113 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGV---N--IRITS----------GPALE-----KPGDLAAILTNL-----EEGDVLFIDEIHR 113 (328)
T ss_pred CCCccHHHHHHHHHHHhCC---C--eEEEe----------ccccc-----ChHHHHHHHHhc-----ccCCEEEEecHhh
Confidence 7999999999999887632 1 11111 11100 123455555543 2245677774 2
Q ss_pred CChhhhhhhhhhccCCcccc-ccCCC-----eeecCCCCeEEEecCCCCCCCccchhccccc-ccCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLT-LANGD-----RLSMALAVKIIFEPHNIDNASPATVSRNGMV-YMSS 1055 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~-L~nge-----ri~l~~~~~~~FEv~dL~~asPAtvSRcgmv-y~~~ 1055 (1282)
+.+.--|-+.+.|+|..+.. +.+|. ++.+|+ +.++.-+......+|+..||||++ .+++
T Consensus 114 l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~-~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 114 LSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP-FTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred cchHHHHHHHHHHHhcceeeeeccCccccceeecCCC-ceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 22333455667777766542 33322 334555 678888888888899999999974 5554
No 26
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.98 E-value=1.4 Score=54.00 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----Cc--eee-eeccCCCC---cccccceecCCCCccccchHHHHHHHHhc----c-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PH--REM-RMNPKAIT---AAQMFGRLDVATNDWTDGIFSALWRKTLK----L- 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~--~~~-~inpk~i~---~~~LyG~~d~~t~eW~dG~~~~~~r~~~~----~- 982 (1282)
|.|+||||+.+++++++...+. +. ... +-+-+++. ... +=++|+.++ -|+ .-+|++.. .
T Consensus 51 p~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D-v~eidaas~---~~v--d~Ir~iie~a~~~P 124 (507)
T PRK06645 51 IRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD-IIEIDAASK---TSV--DDIRRIIESAEYKP 124 (507)
T ss_pred CCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc-EEEeeccCC---CCH--HHHHHHHHHHHhcc
Confidence 7999999999999999965321 00 000 00001111 111 113444432 232 12333322 1
Q ss_pred CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 983 KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 983 ~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
..+.++=+|+|. +|-.--+.+|..|. . |. .-|+++.+||=+.+.....|+-.|||..+.+.+
T Consensus 125 ~~~~~KVvIIDE-a~~Ls~~a~naLLk---~--LE-----epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ 186 (507)
T PRK06645 125 LQGKHKIFIIDE-VHMLSKGAFNALLK---T--LE-----EPPPHIIFIFATTEVQKIPATIISRCQRYDLRR 186 (507)
T ss_pred ccCCcEEEEEEC-hhhcCHHHHHHHHH---H--Hh-----hcCCCEEEEEEeCChHHhhHHHHhcceEEEccC
Confidence 234567788887 55555555666542 1 21 247889999988888888788889999888875
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=0.91 Score=53.73 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CCceeeeeccCCCCcccc--cceecCCCCccccchHHHHHHHHhccC-CCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EPHREMRMNPKAITAAQM--FGRLDVATNDWTDGIFSALWRKTLKLK-PGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~~~~~~r~~~~~~-~~~~~Wi 990 (1282)
|.|+||||+.+.+++++..-. .++.. +.+.+.+..+.. +..+|+.++...|- +..++..+...+ .+.++-+
T Consensus 46 p~G~GKTtla~~la~~l~c~~~~~~~pc~~-c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kvi 123 (363)
T PRK14961 46 TRGVGKTTIARLLAKSLNCQNGITSNPCRK-CIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVY 123 (363)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEE
Confidence 799999999999999985211 11100 001111111110 11123333222221 222333222222 2456789
Q ss_pred EEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 991 VLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 991 vfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
|+|. +|..--+..|..|. + -| ..|+++.+||=+.+.....|+-.|||-.+.+.|-
T Consensus 124 IIDE-a~~l~~~a~naLLk-----~---lE--e~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l 178 (363)
T PRK14961 124 LIDE-VHMLSRHSFNALLK-----T---LE--EPPQHIKFILATTDVEKIPKTILSRCLQFKLKII 178 (363)
T ss_pred EEEC-hhhcCHHHHHHHHH-----H---Hh--cCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCC
Confidence 9998 55444334444331 1 11 1356788999888888888888999988888754
No 28
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.72 E-value=3.6 Score=50.22 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=70.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc-------------------eeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH-------------------REMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~-------------------~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|.|+||||+.+++++++...+.+. .++.||+ .++ -|+ .-+|+
T Consensus 43 p~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida--------------as~---~~v--ddIR~ 103 (491)
T PRK14964 43 ASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA--------------ASN---TSV--DDIKV 103 (491)
T ss_pred CCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec--------------ccC---CCH--HHHHH
Confidence 689999999999999996543211 1122333 221 132 12343
Q ss_pred Hhc----c-CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 979 TLK----L-KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 979 ~~~----~-~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
+.. . ..+.++-+|+|. +|-.--+..|.+|. . | | .-|+++.+||-+.+.....|+-.|||=.+.|
T Consensus 104 Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK---~--L---E--ePp~~v~fIlatte~~Kl~~tI~SRc~~~~f 172 (491)
T PRK14964 104 ILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLK---T--L---E--EPAPHVKFILATTEVKKIPVTIISRCQRFDL 172 (491)
T ss_pred HHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHH---H--H---h--CCCCCeEEEEEeCChHHHHHHHHHhheeeec
Confidence 322 1 234678999998 56555566665532 1 1 1 1467899999999998888888999999888
Q ss_pred CCC
Q psy9553 1054 SSS 1056 (1282)
Q Consensus 1054 ~~~ 1056 (1282)
.+-
T Consensus 173 ~~l 175 (491)
T PRK14964 173 QKI 175 (491)
T ss_pred ccc
Confidence 753
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.28 E-value=2.5 Score=41.98 Aligned_cols=117 Identities=17% Similarity=0.050 Sum_probs=58.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch-HHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI-FSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~-~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|.|+|||++.+.++..+..-+ ..++.+++........+.. ..+. .....+.. ........+++|- +
T Consensus 27 ~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~lilDe-~ 93 (151)
T cd00009 27 PPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAE--------LFGHFLVRLLFEL--AEKAKPGVLFIDE-I 93 (151)
T ss_pred CCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHH--------HhhhhhHhHHHHh--hccCCCeEEEEeC-h
Confidence 799999999999988875322 2233344333222111111 1110 11122211 1233457899995 5
Q ss_pred Ch---hhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC--CCCccchhcc-cccccC
Q psy9553 997 DS---IWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID--NASPATVSRN-GMVYMS 1054 (1282)
Q Consensus 997 d~---~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~--~asPAtvSRc-gmvy~~ 1054 (1282)
|. ...+.+..++..-.... ..+..+++++-..+-. ...++..+|| .++.++
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 42 23333333333221111 3456677887766554 4556778888 444444
No 30
>smart00150 SPEC Spectrin repeats.
Probab=84.78 E-value=20 Score=32.85 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy9553 235 HREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLR 312 (1282)
Q Consensus 235 ~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~ 312 (1282)
...+..+...+++....+... |.+++++...+.....++......+..+..+...-.-|..-+..-...-...+..+.
T Consensus 4 ~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~ 83 (101)
T smart00150 4 LRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELN 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 344555566666655555433 468888888888888888888888888888877766665444333333344567788
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9553 313 YTWQKLLARAMTANVL 328 (1282)
Q Consensus 313 ~~w~~l~~~~~~~~~~ 328 (1282)
..|..+...+......
T Consensus 84 ~~w~~l~~~~~~r~~~ 99 (101)
T smart00150 84 ERWEELKELAEERRQK 99 (101)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8898888776655443
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.84 E-value=1.5 Score=43.09 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|.|+|||++.+.+++.+. ...+.+++..+. +...|.. -.-+..+++++.... .+.=|++|. +|
T Consensus 6 ~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~~--~~~vl~iDe-~d 68 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG-----FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKSA--KPCVLFIDE-ID 68 (132)
T ss_dssp STTSSHHHHHHHHHHHTT-----SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHTS--TSEEEEEET-GG
T ss_pred cCCCCeeHHHHHHHhhcc-----cccccccccccc-ccccccc--------ccccccccccccccc--cceeeeecc-ch
Confidence 789999999999999873 233444444433 1111111 112444455543222 346788886 88
Q ss_pred hhhhhh-----------hhhh---ccCCccccccCCCeeecCCCCeEEEecCCCCCCCccch-hccccc
Q psy9553 998 SIWIEN-----------LNSV---LDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATV-SRNGMV 1051 (1282)
Q Consensus 998 ~~WiE~-----------mnsv---lDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtv-SRcgmv 1051 (1282)
..+-.. ++++ +|....- ..++.+|+=..+.....|+-. +||.-+
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDKIDPALLRSRFDRR 127 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGGSCHHHHSTTSEEE
T ss_pred hcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhhCCHhHHhCCCcEE
Confidence 777666 3333 2221111 456889999999889999998 888754
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.35 E-value=2.8 Score=51.59 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC------------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP------------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKT 979 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~------------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~ 979 (1282)
|.|+||||+.+.+++++...+.. ..++.|||. . ..|+ ..+|++
T Consensus 44 ppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~--------------~---~~~v--d~iR~l 104 (504)
T PRK14963 44 PRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA--------------S---NNSV--EDVRDL 104 (504)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc--------------c---cCCH--HHHHHH
Confidence 68999999999999999753311 012233431 0 0122 223333
Q ss_pred ---hc--cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccC
Q psy9553 980 ---LK--LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMS 1054 (1282)
Q Consensus 980 ---~~--~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~ 1054 (1282)
+. ...+.++.||+|-+ |..--+.+|.+|.- |.+ -++++.+||=+.+.....|+.-|||..+.|.
T Consensus 105 ~~~~~~~p~~~~~kVVIIDEa-d~ls~~a~naLLk~-----LEe-----p~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~ 173 (504)
T PRK14963 105 REKVLLAPLRGGRKVYILDEA-HMMSKSAFNALLKT-----LEE-----PPEHVIFILATTEPEKMPPTILSRTQHFRFR 173 (504)
T ss_pred HHHHhhccccCCCeEEEEECc-cccCHHHHHHHHHH-----HHh-----CCCCEEEEEEcCChhhCChHHhcceEEEEec
Confidence 11 12346789999984 54444445544321 111 2467788888877778888999999999998
Q ss_pred C
Q psy9553 1055 S 1055 (1282)
Q Consensus 1055 ~ 1055 (1282)
+
T Consensus 174 ~ 174 (504)
T PRK14963 174 R 174 (504)
T ss_pred C
Confidence 5
No 33
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.31 E-value=2.6 Score=52.81 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccc--cceecCCCCccccchHHHHHHHHhc-----cCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQM--FGRLDVATNDWTDGIFSALWRKTLK-----LKPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~~~~~~r~~~~-----~~~~~ 986 (1282)
|.|+|||++.++|++|+..... ++.... +-+.++.+.. +-.+|+.++ .|+ .-+|++.. ...+.
T Consensus 46 p~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~-~C~~i~~g~~~dv~eidaas~---~~v--d~ir~i~~~v~~~p~~~~ 119 (559)
T PRK05563 46 PRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE-ICKAITNGSLMDVIEIDAASN---NGV--DEIRDIRDKVKYAPSEAK 119 (559)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH-HHHHHhcCCCCCeEEeecccc---CCH--HHHHHHHHHHhhCcccCC
Confidence 6899999999999999865321 111000 1111111110 012333321 232 22333322 12345
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++.+|+|. +|..=-+..|+.|- +|- .-|+++.+||=+.+.....|+-.|||..+-|.+-
T Consensus 120 ~kViIIDE-~~~Lt~~a~naLLK-----tLE-----epp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~ 178 (559)
T PRK05563 120 YKVYIIDE-VHMLSTGAFNALLK-----TLE-----EPPAHVIFILATTEPHKIPATILSRCQRFDFKRI 178 (559)
T ss_pred eEEEEEEC-cccCCHHHHHHHHH-----Hhc-----CCCCCeEEEEEeCChhhCcHHHHhHheEEecCCC
Confidence 78999998 66555556666643 221 1267888898777766666667899999988753
No 34
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.69 E-value=2.8 Score=52.58 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=71.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC---------ceeeeeccCCCCcccc--cceecCCCCccccch--HHHHHHHHhcc-C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP---------HREMRMNPKAITAAQM--FGRLDVATNDWTDGI--FSALWRKTLKL-K 983 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~---------~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~--~~~~~r~~~~~-~ 983 (1282)
|.|+||||+.++|++++...+.. +.. +-+-+.|..+.- |=.+|..+ ..|| +-.++..+... .
T Consensus 46 p~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~-C~~C~~i~~g~h~D~~eldaas---~~~Vd~iReli~~~~~~p~ 121 (618)
T PRK14951 46 TRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV-CQACRDIDSGRFVDYTELDAAS---NRGVDEVQQLLEQAVYKPV 121 (618)
T ss_pred CCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc-cHHHHHHHcCCCCceeecCccc---ccCHHHHHHHHHHHHhCcc
Confidence 68999999999999999753211 000 000011111000 11223322 1233 11222222211 2
Q ss_pred CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 984 PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 984 ~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.+..+.+|+|. ||-.=.+..|.+| |+|- ..|+++.|||=+.|....-|.-.|||=.+.|.+-
T Consensus 122 ~g~~KV~IIDE-vh~Ls~~a~NaLL---KtLE-------EPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~L 183 (618)
T PRK14951 122 QGRFKVFMIDE-VHMLTNTAFNAML---KTLE-------EPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPM 183 (618)
T ss_pred cCCceEEEEEC-hhhCCHHHHHHHH---Hhcc-------cCCCCeEEEEEECCchhhhHHHHHhceeeecCCC
Confidence 34578999997 7766666667665 3222 1467899999888888877788999999988753
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=82.60 E-value=12 Score=43.13 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC-C--CCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK-P--GDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~-~--~~~~WivfDG 994 (1282)
|.|+|||++.+.+++.+..-+.......+|+.. .. ..+++...+++.+... . ..++.|++|.
T Consensus 46 ~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~-----------~~----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe 110 (319)
T PRK00440 46 PPGTGKTTAALALARELYGEDWRENFLELNASD-----------ER----GIDVIRNKIKEFARTAPVGGAPFKIIFLDE 110 (319)
T ss_pred CCCCCHHHHHHHHHHHHcCCccccceEEecccc-----------cc----chHHHHHHHHHHHhcCCCCCCCceEEEEeC
Confidence 689999999999998874322111122233211 00 0112223333333221 1 3468999997
Q ss_pred CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 995 PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 995 ~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+|..--+..+.++. +- | ..++++.+||-..+....-++-.|||.++.+.+-
T Consensus 111 -~~~l~~~~~~~L~~------~l--e--~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l 161 (319)
T PRK00440 111 -ADNLTSDAQQALRR------TM--E--MYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPL 161 (319)
T ss_pred -cccCCHHHHHHHHH------HH--h--cCCCCCeEEEEeCCccccchhHHHHhheeeeCCC
Confidence 55443333222211 10 0 1245678888766655566778899999988764
No 36
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=82.15 E-value=2.9 Score=48.46 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC--CCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK--PGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~--~~~~~WivfDG~ 995 (1282)
|.|+|||++.+.++..+ +. ..+.+||-. | . .|.+- ..+....... .+..+=+|+|.
T Consensus 51 ~~G~GKT~la~~l~~~~---~~--~~~~i~~~~-------~-------~-~~~i~-~~l~~~~~~~~~~~~~~vliiDe- 108 (316)
T PHA02544 51 SPGTGKTTVAKALCNEV---GA--EVLFVNGSD-------C-------R-IDFVR-NRLTRFASTVSLTGGGKVIIIDE- 108 (316)
T ss_pred cCCCCHHHHHHHHHHHh---Cc--cceEeccCc-------c-------c-HHHHH-HHHHHHHHhhcccCCCeEEEEEC-
Confidence 79999999999998765 21 233455532 1 1 12111 1122222111 13456788887
Q ss_pred CChh----hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 996 VDSI----WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 996 vd~~----WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
+|.. ..+.|.+.|+. .++++++||-..+.....|+-.|||..+.+.+
T Consensus 109 ~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 109 FDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred cccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 4432 33444444432 34678899988888888899999999888843
No 37
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=81.95 E-value=3.3 Score=48.05 Aligned_cols=132 Identities=19% Similarity=0.147 Sum_probs=78.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----C---------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----P---------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWR 977 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~---------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r 977 (1282)
|.|.|||++.+.+++++..-+. + ..++.++|-+-. ...+..+..|--.-+|
T Consensus 29 ~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~~~~I~id~iR 99 (325)
T PRK08699 29 KKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRKLLQIKIDAVR 99 (325)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------ccccccCCCcCHHHHH
Confidence 6889999999999999853211 1 123456662100 0000011112122344
Q ss_pred HHhc----cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 978 KTLK----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 978 ~~~~----~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
++.. .....+.=||+|-|+|..=.+.-|.+|. +|-= .++++.+|+=+++.....|+..|||=.+.|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk---~LEe-------p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~ 169 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLK---VLEE-------PPPQVVFLLVSHAADKVLPTIKSRCRKMVL 169 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHH---HHHh-------CcCCCEEEEEeCChHhChHHHHHHhhhhcC
Confidence 4332 2222233356677888877777777763 2211 135688999899999888888999999999
Q ss_pred CCCCCCcHHHHHHHhccC
Q psy9553 1054 SSSGLDWSPIVAAWLRGR 1071 (1282)
Q Consensus 1054 ~~~~~~~~~~~~swl~~~ 1071 (1282)
.|-. ..-+..||...
T Consensus 170 ~~~~---~~~~~~~L~~~ 184 (325)
T PRK08699 170 PAPS---HEEALAYLRER 184 (325)
T ss_pred CCCC---HHHHHHHHHhc
Confidence 8643 34567788653
No 38
>KOG3091|consensus
Probab=81.77 E-value=1.3e+02 Score=36.22 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=74.3
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHHHHHHHccCCCeeEeCceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 164 INRRDVTNV---GLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDY 240 (1282)
Q Consensus 164 ~~~f~~~~~---~l~~~~~~i~~y~~~~~eI~~l~~~~~iG~~~~Vd~~~lK~~L~~~~~~~~~~l~~~L~~~~~~~~~~ 240 (1282)
.++++...| +-..|++.+ .++-|....+- ...+-+.+|+..+.-..+ ..+.++..++.
T Consensus 299 ~e~~L~~kP~gVd~~~W~QA~---------~dnp~s~kliP-VpvvGF~dL~~R~K~Q~q---------~~~~~r~ri~~ 359 (508)
T KOG3091|consen 299 TEAYLETKPAGVDQRIWRQAM---------KDNPPSNKLIP-VPVVGFEDLRQRLKVQDQ---------EVKQHRIRINA 359 (508)
T ss_pred HHHHhcCCCCCcCHHHHHHHh---------hcCCCcccccc-eeccchHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 455665543 345566554 24555556665 777788888876654433 33445666666
Q ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHH
Q psy9553 241 VYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKED 304 (1282)
Q Consensus 241 l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~ 304 (1282)
|.+.+.+.. +.. ......|.+++.+..++..++-.+.-...+|+++++.+..++
T Consensus 360 i~e~v~eLq-k~~---------ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E 413 (508)
T KOG3091|consen 360 IGERVTELQ-KHH---------ADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE 413 (508)
T ss_pred HHHHHHHHH-hhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH
Confidence 666666654 222 123345567788889999999999999999999999887764
No 39
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=80.63 E-value=3.3 Score=43.08 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC-CCCceEEEEcCCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK-PGDHVWLVLDGPV 996 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~-~~~~~WivfDG~v 996 (1282)
-|.||||+--.|+.++...|..+-+...||-.-+...+ |..-.....++...... .....+||+|.|-
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp 77 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM----------WRGPMKMGAIKQFLTDVDWGELDYLVIDMPP 77 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH----------HhCcchHHHHHHHHHHhhcCCCCEEEEeCCC
Confidence 46999999999999999888777666677755333222 22112334445444322 2456799999986
No 40
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.48 E-value=8.8 Score=44.83 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=60.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee------cCCC-Cccc---------cchHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL------DVAT-NDWT---------DGIFSALWRKTLK 981 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~------d~~t-~eW~---------dG~~~~~~r~~~~ 981 (1282)
|.|+|||++.+.+++.+..-+.......+|.. ++++.. +|.- +.+. .+.+..+++....
T Consensus 44 p~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T PRK12402 44 PPGSGKTAAVRALARELYGDPWENNFTEFNVA-----DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYAS 118 (337)
T ss_pred CCCCCHHHHHHHHHHHhcCcccccceEEechh-----hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHh
Confidence 79999999999999887533212222334432 221111 0100 0000 1122223323222
Q ss_pred cC--CCCceEEEEcCC--CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 982 LK--PGDHVWLVLDGP--VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 982 ~~--~~~~~WivfDG~--vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.. .++++=||+|.. +++...+.|...|++ .++++++||=+.+-...-|+-.|||..|.+.|-
T Consensus 119 ~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~ 184 (337)
T PRK12402 119 YRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------------YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAP 184 (337)
T ss_pred cCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------------ccCCCeEEEEeCChhhCchhhcCCceEEEecCC
Confidence 11 234566888872 223233334444432 234566777555444455677899999988764
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=79.66 E-value=4.5 Score=51.23 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccc--cceecCCCCccccch--HHHHHHHHhcc-CCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQM--FGRLDVATNDWTDGI--FSALWRKTLKL-KPGDHV 988 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~--~~~~~r~~~~~-~~~~~~ 988 (1282)
|.|+||||+.++|++++..-.. ++.. +=+-+.|..+.. |=++|..++ .|+ +-.+++.+... ..+..+
T Consensus 46 PpGvGKTTlAriLAKaLnCe~~~~~~PCG~-C~sCr~I~~G~h~DviEIDAas~---rgVDdIReLIe~a~~~P~~gr~K 121 (830)
T PRK07003 46 TRGVGKTTLSRIFAKALNCETGVTSQPCGV-CRACREIDEGRFVDYVEMDAASN---RGVDEMAALLERAVYAPVDARFK 121 (830)
T ss_pred CCCCCHHHHHHHHHHHhcCccCCCCCCCcc-cHHHHHHhcCCCceEEEeccccc---ccHHHHHHHHHHHHhccccCCce
Confidence 6899999999999999864211 1100 000000100000 112333321 233 23334433322 234568
Q ss_pred EEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 989 WLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 989 WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.||+|- +|-.=-+..|.+|. +|- .-+++++|||=+.+.....|.-.|||=.+.|.+-
T Consensus 122 VIIIDE-ah~LT~~A~NALLK---tLE-------EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 122 VYMIDE-VHMLTNHAFNAMLK---TLE-------EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred EEEEeC-hhhCCHHHHHHHHH---HHH-------hcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 899997 55544444555531 111 1356899999999999998888999999988753
No 42
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.66 E-value=5.9 Score=42.45 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=40.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeee-ccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRM-NPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~i-npk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|+||||||+.+.|...+..-.. ..++++ +|-......-.+.+....-.+....++..+|.+... ...+|++|=+-
T Consensus 9 ptGSGKTTll~~ll~~~~~~~~-~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~---~pd~ii~gEir 84 (198)
T cd01131 9 PTGSGKSTTLAAMIDYINKNKT-HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ---DPDVILVGEMR 84 (198)
T ss_pred CCCCCHHHHHHHHHHHhhhcCC-cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC---CcCEEEEcCCC
Confidence 7899999999998887753211 122222 332221111111111000112223466666666543 35689999887
Q ss_pred Chh
Q psy9553 997 DSI 999 (1282)
Q Consensus 997 d~~ 999 (1282)
|++
T Consensus 85 d~e 87 (198)
T cd01131 85 DLE 87 (198)
T ss_pred CHH
Confidence 765
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.63 E-value=1.8e+02 Score=36.73 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHhHH-HHHHhhHHHHHHHHhhhhcCCCCCHH
Q psy9553 258 DLDDVRMIMELLKRIRDQEV-DMELKIEPIEEAYNVITRYDLPVDKE 303 (1282)
Q Consensus 258 ~leel~e~~~~i~~i~~~~~-~le~~i~~i~e~~~lL~~~~~~l~~e 303 (1282)
.+.++...|+.|..+-.... .+-.+++.+...|+-|..-||.++..
T Consensus 206 ~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~ 252 (569)
T PRK04778 206 ELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL 252 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34455555555544433332 35567888999999998888877764
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=79.42 E-value=9.2 Score=42.03 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC--
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP-- 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~-- 995 (1282)
|+|+|||.+.+.++.++..-+..+.++.++ + . +.....+++.. .....+++|--
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-------~----~--------~~~~~~~~~~~-----~~~dlLilDDi~~ 102 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-------K----S--------QYFSPAVLENL-----EQQDLVCLDDLQA 102 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-------H----h--------hhhhHHHHhhc-----ccCCEEEEeChhh
Confidence 799999999999998876545444332221 0 0 00112233322 12368999862
Q ss_pred --CChhhhhhhhhhc----cCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc---ccccCCC
Q psy9553 996 --VDSIWIENLNSVL----DDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG---MVYMSSS 1056 (1282)
Q Consensus 996 --vd~~WiE~mnsvl----Ddnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg---mvy~~~~ 1056 (1282)
-|..|-+.+-..+ ++++.+.+.++.. ...++...-|+..|||+ ++.+.+-
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~~~~illits~~-----------~p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQGKTLLLISADC-----------SPHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC-----------ChHHccccchhHHHHHhcCCeeeCCCC
Confidence 2567876654444 4444332222221 13445555688899987 4446543
No 45
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=78.24 E-value=4.1 Score=49.61 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=42.2
Q ss_pred CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 984 PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 984 ~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.+.++-||+|. +|..--+..|..|. +|- .-|+++.+||=+.+.....|+-.|||-.|.|.+-
T Consensus 119 ~~~~kvvIIde-ad~lt~~~~n~LLk-----~lE-----ep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l 180 (451)
T PRK06305 119 KSRYKIYIIDE-VHMLTKEAFNSLLK-----TLE-----EPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRI 180 (451)
T ss_pred cCCCEEEEEec-HHhhCHHHHHHHHH-----Hhh-----cCCCCceEEEEeCChHhcchHHHHhceEEeCCCC
Confidence 35688999998 44444444444431 111 1356788888777777778889999999999753
No 46
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=78.19 E-value=3.2 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++|+||||..+.|++.+
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57899999999999987
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=78.08 E-value=3.7 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.084 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|+|+|||++.+.+++.+..++.
T Consensus 50 ppGtGKTtlA~~ia~~l~~~~~ 71 (261)
T TIGR02881 50 NPGTGKTTVARILGKLFKEMNV 71 (261)
T ss_pred CCCCCHHHHHHHHHHHHHhcCc
Confidence 8999999999999998876653
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.37 E-value=3.1 Score=50.31 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----Cce----eeeeccCCCCcccccceecCCCCccccchHHHHHHHH----hcc-CC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHR----EMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKT----LKL-KP 984 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~----~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~----~~~-~~ 984 (1282)
|.|+||||+.++|++++..-.. ++. ...++... +. + +..+|+.++ .|+ .-+|++ ... ..
T Consensus 48 P~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~-~~-d-viEIdaas~---~gV--d~IReL~e~l~~~p~~ 119 (484)
T PRK14956 48 PRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI-SS-D-VLEIDAASN---RGI--ENIRELRDNVKFAPMG 119 (484)
T ss_pred CCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC-Cc-c-ceeechhhc---ccH--HHHHHHHHHHHhhhhc
Confidence 6999999999999999865211 100 00011110 00 1 233454331 232 122332 211 12
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~ 1057 (1282)
+..+=+|+|- +|..=-+..|.+|- . | |. -|.++.+||=+.+.....|+-+|||-.+.|.+-.
T Consensus 120 g~~KV~IIDE-ah~Ls~~A~NALLK---t--L---EE--Pp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls 181 (484)
T PRK14956 120 GKYKVYIIDE-VHMLTDQSFNALLK---T--L---EE--PPAHIVFILATTEFHKIPETILSRCQDFIFKKVP 181 (484)
T ss_pred CCCEEEEEec-hhhcCHHHHHHHHH---H--h---hc--CCCceEEEeecCChhhccHHHHhhhheeeecCCC
Confidence 3456677886 66666666666631 1 1 21 3568899999999999999999999998887543
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=76.93 E-value=5.4 Score=52.27 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=66.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC-CcccccceecCCCCccc---cchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI-TAAQMFGRLDVATNDWT---DGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i-~~~~LyG~~d~~t~eW~---dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||++.+++++++.. ..+.++-..+ ...++.|.. +.|. -|-+...++.+. ....-|++|
T Consensus 355 ppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~~~~----~~~~villD 421 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLKKAK----TKNPLFLLD 421 (775)
T ss_pred CCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHHHhC----cCCCEEEEe
Confidence 7999999999999998742 2233433222 234444431 2232 222333344332 122367887
Q ss_pred CCCChhh-------hhhhhhhccC--Ccccc-ccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 994 GPVDSIW-------IENLNSVLDD--NRTLT-LANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 994 G~vd~~W-------iE~mnsvlDd--nk~L~-L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
= +|..= ...|-.+||. |..++ ---|..+.++ ++-+|+=...+....||-.+||-+|.+.+
T Consensus 422 E-idk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s-~v~~I~TtN~~~~i~~~L~~R~~vi~~~~ 491 (775)
T TIGR00763 422 E-IDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS-KVIFIATANSIDTIPRPLLDRMEVIELSG 491 (775)
T ss_pred c-hhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC-CEEEEEecCCchhCCHHHhCCeeEEecCC
Confidence 4 22221 2334456674 33221 1113333333 45566655566678999999999888875
No 50
>KOG0994|consensus
Probab=76.73 E-value=1.4e+02 Score=39.31 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRY 313 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~ 313 (1282)
+.....++.+.++++...|+....+.+++.++...+..++..+......+..+++...=+.. ...+... .++.|..
T Consensus 1199 y~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~-~~~~a~~---~LesLq~ 1274 (1758)
T KOG0994|consen 1199 YASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITN-SLPLAGK---DLESLQR 1274 (1758)
T ss_pred hHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-ccchhhh---hHHHHHH
Confidence 34455556667777777787777777777777776666666655554444444433221111 1122222 2455555
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9553 314 TWQKLLARAMTANVLLTTMQ 333 (1282)
Q Consensus 314 ~w~~l~~~~~~~~~~l~~~k 333 (1282)
....+.....+.+++++.++
T Consensus 1275 ~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1275 EFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55666555555555555443
No 51
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=76.72 E-value=1.3e+02 Score=34.93 Aligned_cols=118 Identities=13% Similarity=0.159 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCC
Q psy9553 219 INSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDL 298 (1282)
Q Consensus 219 ~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~ 298 (1282)
+......+...+.+.+..-++.+...++++...+...+.+ +.+..+.+++.....+...+.+..+....|.+...
T Consensus 137 ~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-----~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~ 211 (322)
T COG0598 137 ADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-----EELERLGELRRSLVYLRRALAPLRDVLLRLARRPL 211 (322)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCc
Confidence 4456667888888888888999999999999888887765 45555666677777777777777777777766554
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9553 299 -PVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLA 341 (1282)
Q Consensus 299 -~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~ 341 (1282)
.+++++...+..+...-.++...++...+.+....+.+...+.
T Consensus 212 ~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is 255 (322)
T COG0598 212 DWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLIN 255 (322)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666666655555555555555555555444444444443
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=76.55 E-value=2.1 Score=47.34 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=52.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC---
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--- 994 (1282)
|.|+|||++.+.++.++..-|..+.++..+-. . .. ...+++.. . ...++++|-
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~--------------~-~~----~~~~~~~~-~----~~dlliiDdi~~ 108 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVPLDKR--------------A-WF----VPEVLEGM-E----QLSLVCIDNIEC 108 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH--------------h-hh----hHHHHHHh-h----hCCEEEEeChhh
Confidence 79999999999888876654433332222210 0 00 11112111 1 125888886
Q ss_pred -CCChhhhhhh----hhhccCCc-cccccCCCeeecCCCCeEEEecCCCCCCCccchhccc
Q psy9553 995 -PVDSIWIENL----NSVLDDNR-TLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG 1049 (1282)
Q Consensus 995 -~vd~~WiE~m----nsvlDdnk-~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg 1049 (1282)
+-++.|-+.+ |...+.++ .+.+ +|.. || .++....|.-.|||+
T Consensus 109 ~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~---~p--------~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 109 IAGDELWEMAIFDLYNRILESGRTRLLI-TGDR---PP--------RQLNLGLPDLASRLD 157 (235)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCC---Ch--------HHcCcccHHHHHHHh
Confidence 2267787776 56665544 2333 2321 11 234445699999994
No 53
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=75.35 E-value=21 Score=41.23 Aligned_cols=144 Identities=19% Similarity=0.145 Sum_probs=87.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCC---C--------------c-eeeeecc----CCCCcccccceecCCCCccccchHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE---P--------------H-REMRMNP----KAITAAQMFGRLDVATNDWTDGIFSAL 975 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~---~--------------~-~~~~inp----k~i~~~~LyG~~d~~t~eW~dG~~~~~ 975 (1282)
|.|.||+++.+.+++++-..+. + | ..+.+.| |+|+.+ -
T Consensus 33 ~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vd--------------------q 92 (319)
T PRK06090 33 DEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVE--------------------Q 92 (319)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHH--------------------H
Confidence 6889999999999999854321 1 1 2345665 223221 2
Q ss_pred HHHHhc-----cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccc
Q psy9553 976 WRKTLK-----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGM 1050 (1282)
Q Consensus 976 ~r~~~~-----~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgm 1050 (1282)
+|++.. ...+.++-+|+|+ +|..=.+.-|+.| |+|-= =|+++.+|+-+++...-=|.-+|||-.
T Consensus 93 iR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---KtLEE-------Pp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 93 IRQCNRLAQESSQLNGYRLFVIEP-ADAMNESASNALL---KTLEE-------PAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred HHHHHHHHhhCcccCCceEEEecc-hhhhCHHHHHHHH---HHhcC-------CCCCeEEEEEECChhhChHHHHhccee
Confidence 233321 1234578888887 5555555555665 34422 356788999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHh
Q psy9553 1051 VYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGA 1095 (1282)
Q Consensus 1051 vy~~~~~~~~~~~~~swl~~~~~~~~~~l~~l~~~~~~~~l~~~~ 1095 (1282)
+.|.+-. ...+..|+.+........+-.+..--...+++++.
T Consensus 162 ~~~~~~~---~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 162 WVVTPPS---TAQAMQWLKGQGITVPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred EeCCCCC---HHHHHHHHHHcCCchHHHHHHHcCCCHHHHHHHhC
Confidence 9998644 45677898764222222233333333334455543
No 54
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=75.02 E-value=4.3 Score=46.58 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=24.2
Q ss_pred CcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1247 SSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1247 ~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
..-++...+|++. ++. .+..++|+||.||||||
T Consensus 44 d~~y~f~~~~~~~--vl~-~l~~~~~ilL~G~pGtG 76 (327)
T TIGR01650 44 DPAYLFDKATTKA--ICA-GFAYDRRVMVQGYHGTG 76 (327)
T ss_pred CCCccCCHHHHHH--HHH-HHhcCCcEEEEeCCCCh
Confidence 3457778777664 333 34568899999999999
No 55
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=74.72 E-value=6.3 Score=48.12 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee---eeeccCCCCcccccc--eecCCCCccccchHHHHHHHHhcc----C-CCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE---MRMNPKAITAAQMFG--RLDVATNDWTDGIFSALWRKTLKL----K-PGDH 987 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~---~~inpk~i~~~~LyG--~~d~~t~eW~dG~~~~~~r~~~~~----~-~~~~ 987 (1282)
|-|+||||+-|++++||+..+.++-. .+.+.|+|+.+-.-- ++|..++. ||= -+|++... + .+..
T Consensus 46 ~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~---gVd--diR~i~e~v~y~P~~~ry 120 (515)
T COG2812 46 PRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNT---GVD--DIREIIEKVNYAPSEGRY 120 (515)
T ss_pred CCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhcc---ChH--HHHHHHHHhccCCccccc
Confidence 68899999999999999877532111 245667887762211 23444433 441 24444332 2 2334
Q ss_pred eEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccC
Q psy9553 988 VWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMS 1054 (1282)
Q Consensus 988 ~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~ 1054 (1282)
|=+|.|= |+-+=...-|+.| |+|-= =|+++.|||=+.+..-.-|--+|||=-.-|-
T Consensus 121 KVyiIDE-vHMLS~~afNALL---KTLEE-------PP~hV~FIlATTe~~Kip~TIlSRcq~f~fk 176 (515)
T COG2812 121 KVYIIDE-VHMLSKQAFNALL---KTLEE-------PPSHVKFILATTEPQKIPNTILSRCQRFDFK 176 (515)
T ss_pred eEEEEec-HHhhhHHHHHHHh---ccccc-------CccCeEEEEecCCcCcCchhhhhcccccccc
Confidence 5566664 7777777788886 44433 3789999999999999988899999876654
No 56
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=74.69 E-value=4.3 Score=45.16 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=30.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|+||||+.-.|+.++...|..+-...+||-.=+..-++|.
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~ 50 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGM 50 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCC
Confidence 36999999999999999888776666778853334445553
No 57
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=74.42 E-value=6.8 Score=49.86 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=67.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----Cceeee-eccCCCCcccccceecCCCCccccchHHHHHHHHhc----c-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----PHREMR-MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK----L-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~~~~~~-inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~----~-~~~~ 986 (1282)
|.|+|||++.+.+++++...+. ++.... .-...... + .+|..+ ..|+ .-+|++.. . ..+.
T Consensus 48 P~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv--i--eidaas---n~~v--d~IReLie~~~~~P~~g~ 118 (725)
T PRK07133 48 PRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI--I--EMDAAS---NNGV--DEIRELIENVKNLPTQSK 118 (725)
T ss_pred CCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE--E--EEeccc---cCCH--HHHHHHHHHHHhchhcCC
Confidence 6899999999999999864321 110000 00000010 0 112221 1122 22343322 1 2245
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++=+|+|. +|..=.+..|++|. +|- .-|+++.+||-+.+....-|+-.|||-.|.|.+-
T Consensus 119 ~KV~IIDE-a~~LT~~A~NALLK-----tLE-----EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 119 YKIYIIDE-VHMLSKSAFNALLK-----TLE-----EPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177 (725)
T ss_pred CEEEEEEC-hhhCCHHHHHHHHH-----Hhh-----cCCCceEEEEEcCChhhhhHHHHhhceeEEccCC
Confidence 67788887 55555556666642 111 1367888999888887777778999999998764
No 58
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.18 E-value=7.8 Score=49.06 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=42.5
Q ss_pred CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 984 PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 984 ~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.++++-+|+|. +|-.=.+..|..| |. |- ..|+++.+||=+.+.....|+-.|||-+|.|.+-
T Consensus 119 ~~~~KVvIIde-a~~Ls~~a~naLL---K~--LE-----epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~l 180 (614)
T PRK14971 119 IGKYKIYIIDE-VHMLSQAAFNAFL---KT--LE-----EPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180 (614)
T ss_pred cCCcEEEEEEC-cccCCHHHHHHHH---HH--Hh-----CCCCCeEEEEEeCCchhchHHHHhhhheeecCCC
Confidence 35688999998 3333333444443 11 11 1356788999888888888999999999999854
No 59
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=74.17 E-value=4.8 Score=37.89 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
|+||||+...|+.++...|.++-....+|.
T Consensus 10 G~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 10 GVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 689999999999999876666655556666
No 60
>PRK08118 topology modulation protein; Reviewed
Probab=74.08 E-value=3.6 Score=42.77 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 9 ~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 9 SGGSGKSTLARQLGEKL 25 (167)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999888888765
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.87 E-value=4e+02 Score=37.72 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhHHHHhhhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccc
Q psy9553 587 TAETIGQLEDSLMVLGSLLSNR-----YNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVG 650 (1282)
Q Consensus 587 ~~ei~~~l~d~~~~l~~m~~s~-----~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~yLe~IF~~ 650 (1282)
.+++....+++-..+.++.... -....+.+..+....+..+...--.|..-|..--.|...++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~ 621 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGE 621 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcch
Confidence 4455555555544443332210 013456777777888888888888899999998888876653
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=73.34 E-value=13 Score=46.43 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCce-----e---eee-ccCCCCcccccceecCCCCccccch--HHHHHHHHhcc-CCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHR-----E---MRM-NPKAITAAQMFGRLDVATNDWTDGI--FSALWRKTLKL-KPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~-----~---~~i-npk~i~~~~LyG~~d~~t~eW~dG~--~~~~~r~~~~~-~~~ 985 (1282)
|.|+||||+.+.+++++...+.... + ..+ +..... ++ .+|+. +.-|+ +-.+...+... ..+
T Consensus 46 P~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D---ii-eIdaa---s~igVd~IReIi~~~~~~P~~~ 118 (605)
T PRK05896 46 PRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD---IV-ELDAA---SNNGVDEIRNIIDNINYLPTTF 118 (605)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc---eE-Eeccc---cccCHHHHHHHHHHHHhchhhC
Confidence 6999999999999999965331100 0 000 000111 11 12322 12232 12222222221 123
Q ss_pred CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 986 ~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.++=+|+|. +|..=.+.-|+.|. +|- ..|+++.+||=+.+....-|+-.|||-.+.|.+-
T Consensus 119 ~~KVIIIDE-ad~Lt~~A~NaLLK-----tLE-----EPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~L 178 (605)
T PRK05896 119 KYKVYIIDE-AHMLSTSAWNALLK-----TLE-----EPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKL 178 (605)
T ss_pred CcEEEEEec-hHhCCHHHHHHHHH-----HHH-----hCCCcEEEEEECCChHhhhHHHHhhhhhcccCCC
Confidence 456688887 44332333343332 111 1345777888777776666777999999998753
No 63
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=73.05 E-value=11 Score=43.67 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-------------------CceeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-------------------PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-------------------~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|+|+|||++...|++.+-..+. ...++.+||....... +.-..+|+
T Consensus 32 p~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~---------------i~~~~vr~ 96 (325)
T COG0470 32 PPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID---------------IIVEQVRE 96 (325)
T ss_pred CCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc---------------chHHHHHH
Confidence 7999999999999998863221 1245567776544321 44555666
Q ss_pred HhccC-----CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 979 TLKLK-----PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 979 ~~~~~-----~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
+.... .+..+=|++|. +|..=.+.-|..+ |++- .=|.+..+++=+.+....-|.-.|||-+++|
T Consensus 97 ~~~~~~~~~~~~~~kviiide-ad~mt~~A~nall---k~lE-------ep~~~~~~il~~n~~~~il~tI~SRc~~i~f 165 (325)
T COG0470 97 LAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALL---KTLE-------EPPKNTRFILITNDPSKILPTIRSRCQRIRF 165 (325)
T ss_pred HHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHH---HHhc-------cCCCCeEEEEEcCChhhccchhhhcceeeec
Confidence 55421 24467788886 5544444444442 2221 2356778888888899999999999999999
Q ss_pred CC
Q psy9553 1054 SS 1055 (1282)
Q Consensus 1054 ~~ 1055 (1282)
.|
T Consensus 166 ~~ 167 (325)
T COG0470 166 KP 167 (325)
T ss_pred CC
Confidence 97
No 64
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.92 E-value=17 Score=43.57 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
++++=+|+|. +|-.--++.|..|. . | | ..|+++.+||-+.+.....|+-.|||.+|-|.+-. ..-+
T Consensus 126 ~~~kvvIIde-a~~l~~~~~~~LLk---~--L---E--ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~---~~ei 191 (397)
T PRK14955 126 GRYRVYIIDE-VHMLSIAAFNAFLK---T--L---E--EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIP---LEEI 191 (397)
T ss_pred CCeEEEEEeC-hhhCCHHHHHHHHH---H--H---h--cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCC---HHHH
Confidence 4567788887 33333334444431 1 1 1 24678889998888888888889999999887543 2334
Q ss_pred HHHhc
Q psy9553 1065 AAWLR 1069 (1282)
Q Consensus 1065 ~swl~ 1069 (1282)
..|+.
T Consensus 192 ~~~l~ 196 (397)
T PRK14955 192 QQQLQ 196 (397)
T ss_pred HHHHH
Confidence 45554
No 65
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=72.35 E-value=5.1 Score=41.80 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
-|.||||+.-.|+.++.+.|.++-....+|-.=+...++|.-...+..+. ++.. ..|||+|+|-.
T Consensus 9 gG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~d~viiD~p~~ 73 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLH---------DVLA-----GDYILIDSPAG 73 (179)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchh---------hccc-----CCEEEEECCCC
Confidence 36899999999999999888777777778864444445553221111111 1111 17999999854
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.29 E-value=12 Score=49.28 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC----CCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK----AITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk----~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||.+.+.|++.+- +......++|-- .-+...|.|.-=---+.=..|.++..+|+. + ..=|+||
T Consensus 604 p~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~---p---~svvllD 675 (852)
T TIGR03345 604 PSGVGKTETALALAELLY--GGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK---P---YSVVLLD 675 (852)
T ss_pred CCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC---C---CcEEEEe
Confidence 899999999999999873 222233344411 122334544210000111468888888762 1 2468888
Q ss_pred C--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEE
Q psy9553 994 G--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIF 1032 (1282)
Q Consensus 994 G--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~F 1032 (1282)
- ..+|.=.+.+=.+||++. ||-+.|..+.+.+ +-+||
T Consensus 676 Eieka~~~v~~~Llq~ld~g~-l~d~~Gr~vd~~n-~iiI~ 714 (852)
T TIGR03345 676 EVEKAHPDVLELFYQVFDKGV-MEDGEGREIDFKN-TVILL 714 (852)
T ss_pred chhhcCHHHHHHHHHHhhcce-eecCCCcEEeccc-cEEEE
Confidence 6 555555555667788875 6888899988875 44444
No 67
>PRK13808 adenylate kinase; Provisional
Probab=72.16 E-value=5.4 Score=46.06 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee------eeeccCCCCcccccceecCCCCccc-cchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE------MRMNPKAITAAQMFGRLDVATNDWT-DGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~------~~inpk~i~~~~LyG~~d~~t~eW~-dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|+||||||.-+.|++.+.. .+.. ..|++++-.-.++-..++ .++|- |-++..++.+..........|
T Consensus 8 pPGSGK~T~a~~LA~~ygl---~~is~gdlLR~~i~~~s~~g~~~~~~~~--~G~lVPdeiv~~li~e~l~~~~~~~G~- 81 (333)
T PRK13808 8 PPGAGKGTQAQRLVQQYGI---VQLSTGDMLRAAVAAGTPVGLKAKDIMA--SGGLVPDEVVVGIISDRIEQPDAANGF- 81 (333)
T ss_pred CCCCCHHHHHHHHHHHhCC---ceecccHHHHHHhhcCChhhHHHHHHHH--cCCCCCHHHHHHHHHHHHhcccccCCE-
Confidence 7899999999999886632 1110 012222211111101111 11121 335555665544333223445
Q ss_pred EEcC-CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC
Q psy9553 991 VLDG-PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN 1036 (1282)
Q Consensus 991 vfDG-~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d 1036 (1282)
|+|| |-...=+|.|+..|-++. +.+.+-++|++.+
T Consensus 82 ILDGFPRt~~QA~~L~~ll~~~g-----------i~PDlVI~LDVp~ 117 (333)
T PRK13808 82 ILDGFPRTVPQAEALDALLKDKQ-----------LKLDAVVELRVNE 117 (333)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcC-----------CCcCeEEEEECCH
Confidence 7899 666666777766553221 4566677777643
No 68
>PHA02244 ATPase-like protein
Probab=72.16 E-value=4.9 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred HHHHHHhcCCcEEEecCCCCC
Q psy9553 1262 LVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1262 l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+..++..+.||||.||||||
T Consensus 111 ri~r~l~~~~PVLL~GppGtG 131 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSG 131 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCC
Confidence 456788999999999999999
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=72.02 E-value=5.6 Score=50.19 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccccc--eecCCCCccccchHHHHHHHHhcc-----CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQMFG--RLDVATNDWTDGIFSALWRKTLKL-----KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~LyG--~~d~~t~eW~dG~~~~~~r~~~~~-----~~~~ 986 (1282)
|.|+||||+.++|++++..-+. ++.. +-.-+.+..+.... .+|.. ...|+ ..+|++... ..+.
T Consensus 46 P~GvGKTTlAriLAk~LnC~~~~~~~pCg~-C~sCr~i~~g~~~DvlEidaA---s~~gV--d~IRelle~a~~~P~~gk 119 (709)
T PRK08691 46 TRGVGKTTIARILAKSLNCENAQHGEPCGV-CQSCTQIDAGRYVDLLEIDAA---SNTGI--DNIREVLENAQYAPTAGK 119 (709)
T ss_pred CCCCcHHHHHHHHHHHhcccCCCCCCCCcc-cHHHHHHhccCccceEEEecc---ccCCH--HHHHHHHHHHHhhhhhCC
Confidence 6899999999999999864321 1100 00111122222111 12322 23343 344554331 2345
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
++-||+|. +|-.--+..|.+| |.|- ..++++.+||=+.|....-|...|||=.+.|.+
T Consensus 120 ~KVIIIDE-ad~Ls~~A~NALL---KtLE-------EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~ 177 (709)
T PRK08691 120 YKVYIIDE-VHMLSKSAFNAML---KTLE-------EPPEHVKFILATTDPHKVPVTVLSRCLQFVLRN 177 (709)
T ss_pred cEEEEEEC-ccccCHHHHHHHH---HHHH-------hCCCCcEEEEEeCCccccchHHHHHHhhhhcCC
Confidence 78999998 5544444444443 1111 145789999999888888888899997776553
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=71.82 E-value=11 Score=43.64 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCc-eeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhc----c-CCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE--EPH-REMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK----L-KPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~--~~~-~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~----~-~~~~~~W 989 (1282)
|.|.|||++.+.+++++.... ..+ ..+.+.|- .| ..+=..-+|++.. . ..+.++-
T Consensus 34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-------~~----------~~i~v~~ir~~~~~~~~~p~~~~~kv 96 (313)
T PRK05564 34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-------NK----------KSIGVDDIRNIIEEVNKKPYEGDKKV 96 (313)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-------cC----------CCCCHHHHHHHHHHHhcCcccCCceE
Confidence 688999999999999884321 111 12223330 01 0011122454443 1 2346788
Q ss_pred EEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhc
Q psy9553 990 LVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069 (1282)
Q Consensus 990 ivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~ 1069 (1282)
+|+|. +|..=.+.-|+.| | +|- .-|+++.+||=+++....-|+-.|||=.+.|.+-. ..-+..|+.
T Consensus 97 ~iI~~-ad~m~~~a~naLL---K--~LE-----epp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~---~~~~~~~l~ 162 (313)
T PRK05564 97 IIIYN-SEKMTEQAQNAFL---K--TIE-----EPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS---KEEIEKFIS 162 (313)
T ss_pred EEEec-hhhcCHHHHHHHH---H--Hhc-----CCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC---HHHHHHHHH
Confidence 88887 3444344445554 2 332 25778999998888888889889999999997532 234577886
Q ss_pred c
Q psy9553 1070 G 1070 (1282)
Q Consensus 1070 ~ 1070 (1282)
+
T Consensus 163 ~ 163 (313)
T PRK05564 163 Y 163 (313)
T ss_pred H
Confidence 4
No 71
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=71.76 E-value=2 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.055 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++|+||||+.+.|++.+
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57899999999999986
No 72
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=71.62 E-value=20 Score=41.46 Aligned_cols=152 Identities=14% Similarity=0.063 Sum_probs=90.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC---------------c-eeeee--ccCCCCcccccceecCCCCccccchHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP---------------H-REMRM--NPKAITAAQMFGRLDVATNDWTDGIFSALWRKT 979 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~---------------~-~~~~i--npk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~ 979 (1282)
|.|.||+++...+++++-.-+.. | .++.+ .|.. -|. . . +-.|--.-+|++
T Consensus 34 p~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~------~~~-k---~--~~~I~idqIR~l 101 (319)
T PRK08769 34 PEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR------TGD-K---L--RTEIVIEQVREI 101 (319)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc------ccc-c---c--cccccHHHHHHH
Confidence 68899999999999998542210 0 12334 2310 000 0 0 001333355665
Q ss_pred hc-----cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccC
Q psy9553 980 LK-----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMS 1054 (1282)
Q Consensus 980 ~~-----~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~ 1054 (1282)
.. ...+.++-+|+|. +|..=.+.-|+.| |+|-=| |+++.||+=.++....-|.-+|||=.|.|.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~-ae~m~~~AaNaLL---KtLEEP-------p~~~~fiL~~~~~~~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDP-ADAINRAACNALL---KTLEEP-------SPGRYLWLISAQPARLPATIRSRCQRLEFK 170 (319)
T ss_pred HHHHhhCcccCCcEEEEecc-HhhhCHHHHHHHH---HHhhCC-------CCCCeEEEEECChhhCchHHHhhheEeeCC
Confidence 43 1234578999994 6776666667776 444333 457788998888888888889999999998
Q ss_pred CCCCCcHHHHHHHhccCC--hHHHHHHHHHHHhhhHHHHHHHh
Q psy9553 1055 SSGLDWSPIVAAWLRGRS--AKEASVFHHLFEESFPVLYAWGA 1095 (1282)
Q Consensus 1055 ~~~~~~~~~~~swl~~~~--~~~~~~l~~l~~~~~~~~l~~~~ 1095 (1282)
+-. ..-+..||.+.. ......+-.+..-....+++++.
T Consensus 171 ~~~---~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 171 LPP---AHEALAWLLAQGVSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred CcC---HHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHHHhc
Confidence 632 246678987542 22222334444444444556554
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=71.55 E-value=10 Score=47.93 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CCceeeeeccCCCCcccc--cceecCCCCccccchHHHHHHHHhc----c-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EPHREMRMNPKAITAAQM--FGRLDVATNDWTDGIFSALWRKTLK----L-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~~~~~~r~~~~----~-~~~~ 986 (1282)
|.|+||||+.+++++++..-. .++-.. -+-+.|..+.- +=.+|..+ ..||= -+|++.. . ..+.
T Consensus 46 p~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C-~~C~~i~~g~~~D~ieidaas---~~~Vd--diR~li~~~~~~p~~g~ 119 (647)
T PRK07994 46 TRGVGKTTIARLLAKGLNCETGITATPCGEC-DNCREIEQGRFVDLIEIDAAS---RTKVE--DTRELLDNVQYAPARGR 119 (647)
T ss_pred CCCCCHHHHHHHHHHhhhhccCCCCCCCCCC-HHHHHHHcCCCCCceeecccc---cCCHH--HHHHHHHHHHhhhhcCC
Confidence 689999999999999997531 111000 00000000000 00123221 22331 2343322 1 2345
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++=+|+|. +|-.=.+..|..| |+|- .-|++++|||=+.|.....|+-.|||=.+.|.+-
T Consensus 120 ~KV~IIDE-ah~Ls~~a~NALL---KtLE-------EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~L 178 (647)
T PRK07994 120 FKVYLIDE-VHMLSRHSFNALL---KTLE-------EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 (647)
T ss_pred CEEEEEec-hHhCCHHHHHHHH---HHHH-------cCCCCeEEEEecCCccccchHHHhhheEeeCCCC
Confidence 67788886 6666566666664 2222 1357899999999988888888999999988864
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.40 E-value=7.8 Score=48.03 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcc---cccceecCCCCccccch--HHHHHHHHhcc-CCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAA---QMFGRLDVATNDWTDGI--FSALWRKTLKL-KPGDH 987 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~---~LyG~~d~~t~eW~dG~--~~~~~r~~~~~-~~~~~ 987 (1282)
|.|+||||+.+.+++++..-.. ++.. +-+-+.+..+ +++. +|..++ -|+ +-.++..+... ..+.+
T Consensus 46 p~GvGKTTlAr~lAk~L~c~~~~~~~pCg~-C~sC~~i~~~~~~dlie-idaas~---~gvd~ir~ii~~~~~~p~~g~~ 120 (546)
T PRK14957 46 TRGVGKTTLGRLLAKCLNCKTGVTAEPCNK-CENCVAINNNSFIDLIE-IDAASR---TGVEETKEILDNIQYMPSQGRY 120 (546)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCcc-cHHHHHHhcCCCCceEE-eecccc---cCHHHHHHHHHHHHhhhhcCCc
Confidence 6999999999999999864211 1100 0000111111 1111 122111 222 11222222211 23457
Q ss_pred eEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 988 VWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 988 ~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+=+|+|- +|..-.+..|..| |.|- ..|+++.+||=+.|....-|+-.|||=++.|.+-
T Consensus 121 kViIIDE-a~~ls~~a~naLL---K~LE-------epp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~L 178 (546)
T PRK14957 121 KVYLIDE-VHMLSKQSFNALL---KTLE-------EPPEYVKFILATTDYHKIPVTILSRCIQLHLKHI 178 (546)
T ss_pred EEEEEec-hhhccHHHHHHHH---HHHh-------cCCCCceEEEEECChhhhhhhHHHheeeEEeCCC
Confidence 7888887 5655555666555 2221 1367899999998977666677999999999864
No 75
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.24 E-value=11 Score=46.60 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc--eee-eeccCCC---CcccccceecCCCCccccchHHHHHHHHhcc-----CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH--REM-RMNPKAI---TAAQMFGRLDVATNDWTDGIFSALWRKTLKL-----KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~--~~~-~inpk~i---~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-----~~~~ 986 (1282)
|.|+||||+.+.|++++..-..+. ... +-+.+.+ ....++ .+|..+. -|+ .-+|+.... ..+.
T Consensus 44 p~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~-eldaas~---~gI--d~IRelie~~~~~P~~~~ 117 (535)
T PRK08451 44 LRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII-EMDAASN---RGI--DDIRELIEQTKYKPSMAR 117 (535)
T ss_pred CCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE-Eeccccc---cCH--HHHHHHHHHHhhCcccCC
Confidence 688999999999999985321110 000 0000000 000000 1122211 122 234554432 2245
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHH
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAA 1066 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~s 1066 (1282)
++=+|+|. +|..--+..|.+|- +|- ..|+++.+||=+.|....-|+-.|||-++.|.+-. ..-+..
T Consensus 118 ~KVvIIDE-ad~Lt~~A~NALLK-----~LE-----Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls---~~ei~~ 183 (535)
T PRK08451 118 FKIFIIDE-VHMLTKEAFNALLK-----TLE-----EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIP---QNSIIS 183 (535)
T ss_pred eEEEEEEC-cccCCHHHHHHHHH-----HHh-----hcCCceEEEEEECChhhCchHHHhhceeEEcCCCC---HHHHHH
Confidence 67889998 56665666665531 111 13788999999988877778999999999998644 244455
Q ss_pred Hhc
Q psy9553 1067 WLR 1069 (1282)
Q Consensus 1067 wl~ 1069 (1282)
|+.
T Consensus 184 ~L~ 186 (535)
T PRK08451 184 HLK 186 (535)
T ss_pred HHH
Confidence 554
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.99 E-value=9.2 Score=49.56 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=67.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc--eeeeeccCCCCcccc----cceecCCCCccccchHHHHHHHHhc----c-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH--REMRMNPKAITAAQM----FGRLDVATNDWTDGIFSALWRKTLK----L-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~--~~~~inpk~i~~~~L----yG~~d~~t~eW~dG~~~~~~r~~~~----~-~~~~ 986 (1282)
|.|+||||+.+++++++..-.... -+..-++ +....+. +-.+|..+ ..|+= -+|++.. . ..+.
T Consensus 46 PpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s-C~~i~~g~~~DviEidAas---~~kVD--dIReLie~v~~~P~~gk 119 (944)
T PRK14949 46 TRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS-CVEIAQGRFVDLIEVDAAS---RTKVD--DTRELLDNVQYRPSRGR 119 (944)
T ss_pred CCCCCHHHHHHHHHHhccCccCCCCCCCCCchH-HHHHhcCCCceEEEecccc---ccCHH--HHHHHHHHHHhhhhcCC
Confidence 689999999999999986421100 0000000 0011110 01123322 12321 1233322 1 2345
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++=||+|- +|-.=-+.+|.+| |+|-= -|++++|||=+.+.....|+-.|||=.+.|.+-
T Consensus 120 ~KViIIDE-Ah~LT~eAqNALL---KtLEE-------PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpL 178 (944)
T PRK14949 120 FKVYLIDE-VHMLSRSSFNALL---KTLEE-------PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSL 178 (944)
T ss_pred cEEEEEec-hHhcCHHHHHHHH---HHHhc-------cCCCeEEEEECCCchhchHHHHHhheEEeCCCC
Confidence 67788885 6665566666664 22221 256788999888888887888999988888754
No 77
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=70.82 E-value=5.8 Score=51.73 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC----ce----eeeec---cCCCCcccccceecCCCCccccchHHHHHHHHh----c-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP----HR----EMRMN---PKAITAAQMFGRLDVATNDWTDGIFSALWRKTL----K- 981 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~----~~----~~~in---pk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~----~- 981 (1282)
|.|+||||+.++|+++|.....+ +- +..|+ |-.+..-++ |..++ -|| .-+|++. .
T Consensus 45 p~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei----daas~---~~V--d~iR~l~~~~~~~ 115 (824)
T PRK07764 45 PRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI----DAASH---GGV--DDARELRERAFFA 115 (824)
T ss_pred CCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe----ccccc---CCH--HHHHHHHHHHHhc
Confidence 68999999999999999643211 10 00111 111222122 11110 021 1223322 1
Q ss_pred cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcH
Q psy9553 982 LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWS 1061 (1282)
Q Consensus 982 ~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~ 1061 (1282)
...+.++=+|+|- +|..=-+..|++|. +|- ..|+++.|||=+.+....-|+-.|||-+|.|.+- . .
T Consensus 116 p~~~~~KV~IIDE-ad~lt~~a~NaLLK---~LE-------EpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l--~-~ 181 (824)
T PRK07764 116 PAESRYKIFIIDE-AHMVTPQGFNALLK---IVE-------EPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV--P-P 181 (824)
T ss_pred hhcCCceEEEEec-hhhcCHHHHHHHHH---HHh-------CCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCC--C-H
Confidence 1234466778885 66666666677652 221 1567899999988888777888999999999853 2 2
Q ss_pred HHHHHHhcc
Q psy9553 1062 PIVAAWLRG 1070 (1282)
Q Consensus 1062 ~~~~swl~~ 1070 (1282)
.-+..||.+
T Consensus 182 ~~l~~~L~~ 190 (824)
T PRK07764 182 EVMRGYLER 190 (824)
T ss_pred HHHHHHHHH
Confidence 334455543
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=70.68 E-value=6.6 Score=44.73 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC--ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP--HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~--~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG- 994 (1282)
|+|+|||++.+.+++.+..+|.. ...+.++ ..+|.|.+--.|- .-...+++++ .+ .=+++|-
T Consensus 67 ~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-----~~~l~~~~~g~~~----~~~~~~l~~a----~g--gVLfIDE~ 131 (287)
T CHL00181 67 SPGTGKTTVALKMADILYKLGYIKKGHLLTVT-----RDDLVGQYIGHTA----PKTKEVLKKA----MG--GVLFIDEA 131 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-----HHHHHHHHhccch----HHHHHHHHHc----cC--CEEEEEcc
Confidence 89999999999999988776542 2233333 3344443321110 0011223322 11 2345553
Q ss_pred ----------CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecC-----CCCCCCccchhccc-ccccCCC
Q psy9553 995 ----------PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPH-----NIDNASPATVSRNG-MVYMSSS 1056 (1282)
Q Consensus 995 ----------~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~-----dL~~asPAtvSRcg-mvy~~~~ 1056 (1282)
+....=++.|..+|+|+. +++.+|+-.. .+-...|+.-|||+ .|+|+|-
T Consensus 132 ~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 132 YYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred chhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 122334666777787643 3455555432 23344699999998 4667643
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.31 E-value=5.6 Score=49.79 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccccce--ecCCCCccccchHHHHHHHHhc----c-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQMFGR--LDVATNDWTDGIFSALWRKTLK----L-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~LyG~--~d~~t~eW~dG~~~~~~r~~~~----~-~~~~ 986 (1282)
|.|+||||+.++|++++..... ++. .+-+-+.+..+..... +|..++ .|+ .-+|++.. . ..+.
T Consensus 45 PpGvGKTTlAriLAK~LnC~~~~~~~pCg-~C~sC~~I~~g~hpDviEIDAAs~---~~V--ddIReli~~~~y~P~~gk 118 (702)
T PRK14960 45 TRGVGKTTIARILAKCLNCETGVTSTPCE-VCATCKAVNEGRFIDLIEIDAASR---TKV--EDTRELLDNVPYAPTQGR 118 (702)
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCCCCCCc-cCHHHHHHhcCCCCceEEeccccc---CCH--HHHHHHHHHHhhhhhcCC
Confidence 6899999999999999864211 100 0011111211111111 122222 122 12333322 1 2244
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++=+|+|- ||-.=-+..|..|- +|- ..|+++.|||=+.|.....|+-+|||-.+.|.+-
T Consensus 119 ~KV~IIDE-Vh~LS~~A~NALLK-----tLE-----EPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpL 177 (702)
T PRK14960 119 FKVYLIDE-VHMLSTHSFNALLK-----TLE-----EPPEHVKFLFATTDPQKLPITVISRCLQFTLRPL 177 (702)
T ss_pred cEEEEEec-hHhcCHHHHHHHHH-----HHh-----cCCCCcEEEEEECChHhhhHHHHHhhheeeccCC
Confidence 67788886 43333334444432 121 1457889999888877776666899999999754
No 80
>PF14122 YokU: YokU-like protein
Probab=70.23 E-value=2.2 Score=37.73 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=31.0
Q ss_pred hhhhhhhhhccCCcccc-ccCCCe-eecCCCCeEEEecCCCCCCCcc-chhcccccccCCC
Q psy9553 999 IWIENLNSVLDDNRTLT-LANGDR-LSMALAVKIIFEPHNIDNASPA-TVSRNGMVYMSSS 1056 (1282)
Q Consensus 999 ~WiE~mnsvlDdnk~L~-L~nger-i~l~~~~~~~FEv~dL~~asPA-tvSRcgmvy~~~~ 1056 (1282)
.|.++.+.+---+.+.- ||.|-| |.+++ +|| +-|-|||||.+++
T Consensus 3 ~wC~~~~a~~~~~tvyWeLpdGtraIeI~~--------------tP~i~C~~CgmvYq~d~ 49 (87)
T PF14122_consen 3 EWCGSEEASESESTVYWELPDGTRAIEITD--------------TPAIICSNCGMVYQDDE 49 (87)
T ss_pred ccccCcccccccceEEEEcCCCceEEEecC--------------CceeeecCCCcEEehhH
Confidence 57888777766666665 888883 44444 354 3489999999954
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=70.03 E-value=3.5 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.075 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
++||||||..+.|++.+...|
T Consensus 7 ~pGSGKST~a~~La~~l~~~~ 27 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEKN 27 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999887544
No 82
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=69.50 E-value=11 Score=43.67 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC-Ccccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI-TAAQMFG 958 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i-~~~~LyG 958 (1282)
|.|+||||..+.|..++...|.++-+..++|.+- +-+.|.|
T Consensus 64 ~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallg 105 (332)
T PRK09435 64 VPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG 105 (332)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhc
Confidence 7899999999999999988887777888999774 4445544
No 83
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=69.42 E-value=13 Score=43.22 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=87.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----C---------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----P---------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~---------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|.|.||+++.+.+++++..-+. + ...+.+.|.. -...+=-.-+|+
T Consensus 30 ~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~----------------~~~~i~id~iR~ 93 (328)
T PRK05707 30 PAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE----------------ADKTIKVDQVRE 93 (328)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC----------------CCCCCCHHHHHH
Confidence 7899999999999999864211 1 1234455510 001111123333
Q ss_pred Hh----cc-CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 979 TL----KL-KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 979 ~~----~~-~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
+. .. ..+.++-+|+|. +|..=.+.-|+.| |+|-= =|+++.+|+-+++...--|+-+|||=.+.|
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~-a~~m~~~aaNaLL---K~LEE-------Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEP-AEAMNRNAANALL---KSLEE-------PSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred HHHHHhhccccCCCeEEEECC-hhhCCHHHHHHHH---HHHhC-------CCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 32 22 234567778875 6666666777776 33322 246788999999999988888999999999
Q ss_pred CCCCCCcHHHHHHHhccC----ChHHHHHHHHHHHhhhHHHHHHH
Q psy9553 1054 SSSGLDWSPIVAAWLRGR----SAKEASVFHHLFEESFPVLYAWG 1094 (1282)
Q Consensus 1054 ~~~~~~~~~~~~swl~~~----~~~~~~~l~~l~~~~~~~~l~~~ 1094 (1282)
.|-. ..-+..||... .......+-.+.......++.+.
T Consensus 163 ~~~~---~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 163 PLPS---NEESLQWLQQALPESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred CCcC---HHHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 8643 34567788653 12222333344444444455554
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=69.38 E-value=8.5 Score=40.76 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CCceeeeeccCCCCcccc--cceecCCCCccccc--hHHHHHHHHhcc-CCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EPHREMRMNPKAITAAQM--FGRLDVATNDWTDG--IFSALWRKTLKL-KPGDHV 988 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG--~~~~~~r~~~~~-~~~~~~ 988 (1282)
|.|+|||++.+.+++.+..-. .+.. ...+-+.+..++- |-.+++.... .| .+-.+++.+... ..+.++
T Consensus 22 ~~G~gkt~~a~~~~~~l~~~~~~~~~~c~-~~~~c~~~~~~~~~d~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~~~~k 98 (188)
T TIGR00678 22 PEGVGKELLALALAKALLCEQPGGGEPCG-ECPSCRLIEAGNHPDLHRLEPEGQS--IKVDQVRELVEFLSRTPQESGRR 98 (188)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCCCcEEEeccccCc--CCHHHHHHHHHHHccCcccCCeE
Confidence 788999999999999885421 1110 0000011100000 0011111111 12 122234443322 234578
Q ss_pred EEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHh
Q psy9553 989 WLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWL 1068 (1282)
Q Consensus 989 WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl 1068 (1282)
=||+|. +|..=-+..|.+|+ .| |. .|+++.++|=+.+....-||..|||-+|.+.|-. ..-+..|+
T Consensus 99 viiide-~~~l~~~~~~~Ll~-----~l---e~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~---~~~~~~~l 164 (188)
T TIGR00678 99 VVIIED-AERMNEAAANALLK-----TL---EE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS---EEALLQWL 164 (188)
T ss_pred EEEEec-hhhhCHHHHHHHHH-----Hh---cC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC---HHHHHHHH
Confidence 899996 33333333344331 11 22 3578889998888888889999999988887533 22345566
Q ss_pred cc
Q psy9553 1069 RG 1070 (1282)
Q Consensus 1069 ~~ 1070 (1282)
..
T Consensus 165 ~~ 166 (188)
T TIGR00678 165 IR 166 (188)
T ss_pred HH
Confidence 43
No 85
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=69.11 E-value=11 Score=42.57 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=70.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-----------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhc----c
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-----------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK----L 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-----------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~----~ 982 (1282)
|.|+||+++...+++++...+.+ ..++.+.|..-+ ..+--.-+|++.+ .
T Consensus 27 ~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~----------------~~I~idqiR~l~~~~~~~ 90 (290)
T PRK05917 27 QDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG----------------RLHSIETPRAIKKQIWIH 90 (290)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC----------------CcCcHHHHHHHHHHHhhC
Confidence 67899999999999988543211 123344441100 0010112343322 2
Q ss_pred -CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 983 -KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 983 -~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
..+.++-+|+|+ +|..=.+.-|++| |+|-= =|+++.+|+-+++....-|.-.|||=.|.|.|.
T Consensus 91 p~e~~~kv~ii~~-ad~mt~~AaNaLL---K~LEE-------Pp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 91 PYESPYKIYIIHE-ADRMTLDAISAFL---KVLED-------PPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred ccCCCceEEEEec-hhhcCHHHHHHHH---HHhhc-------CCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 234567888886 6666666667775 34322 356888999999999888888999999999864
No 86
>PRK14530 adenylate kinase; Provisional
Probab=69.04 E-value=5.7 Score=43.14 Aligned_cols=18 Identities=17% Similarity=-0.064 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|++.+.
T Consensus 11 ~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 11 APGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999998873
No 87
>PRK08233 hypothetical protein; Provisional
Probab=69.01 E-value=4.2 Score=42.62 Aligned_cols=18 Identities=28% Similarity=0.026 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||..+.|++++.
T Consensus 11 ~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 569999999999998874
No 88
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=68.60 E-value=4.2 Score=47.29 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~ 952 (1282)
|||||||+.++.+.+.+..- .....++..||-...
T Consensus 28 ~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 28 EWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred CCCCCHHHHHHHHHHHHhcccccceeeEEEccccCC
Confidence 89999999999999998765 233455556765544
No 89
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=68.34 E-value=8 Score=45.09 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=57.5
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
+.++.+|+|+ +|..=.+.-|+.|. +|- .-|+++.+||=+++....-|+-.|||=.|.+.+-.- .-+
T Consensus 109 ~~~kvviI~~-a~~~~~~a~NaLLK-----~LE-----EPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~---~~~ 174 (329)
T PRK08058 109 SNKKVYIIEH-ADKMTASAANSLLK-----FLE-----EPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPP---ESL 174 (329)
T ss_pred cCceEEEeeh-HhhhCHHHHHHHHH-----Hhc-----CCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCH---HHH
Confidence 4678999998 33333333333331 221 257889999988888888899999999999986432 234
Q ss_pred HHHhccCC--hHHHHHHHHHHHhhhHHHHHHHh
Q psy9553 1065 AAWLRGRS--AKEASVFHHLFEESFPVLYAWGA 1095 (1282)
Q Consensus 1065 ~swl~~~~--~~~~~~l~~l~~~~~~~~l~~~~ 1095 (1282)
..|+.+.. ......+..+. .-...++++..
T Consensus 175 ~~~L~~~gi~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 175 IQRLQEEGISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred HHHHHHcCCChHHHHHHHHHc-CCHHHHHHHhc
Confidence 67775432 22222333332 23444555543
No 90
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.26 E-value=31 Score=43.68 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
++++=+|+|. +|-.-.+..|..|. +|- ..|+++.+||-+.+....-|+-.|||=+|-|.+-. ..-+
T Consensus 126 ~~~KVvIIdE-ad~Lt~~a~naLLK-----~LE-----ePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~---~~ei 191 (620)
T PRK14954 126 GRYRVYIIDE-VHMLSTAAFNAFLK-----TLE-----EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIP---LDEI 191 (620)
T ss_pred CCCEEEEEeC-hhhcCHHHHHHHHH-----HHh-----CCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCC---HHHH
Confidence 4577788887 44444444555443 111 13466788888877776667779999999997543 2334
Q ss_pred HHHhc
Q psy9553 1065 AAWLR 1069 (1282)
Q Consensus 1065 ~swl~ 1069 (1282)
..|+.
T Consensus 192 ~~~L~ 196 (620)
T PRK14954 192 QSQLQ 196 (620)
T ss_pred HHHHH
Confidence 55654
No 91
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=67.85 E-value=3.1 Score=44.18 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
-|+||||+.-.|+.++...|.++-....+|-+-...-+.|
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~ 47 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFG 47 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTT
T ss_pred CCccHHHHHHHHHhccccccccccccccCcccccHHHHhc
Confidence 3699999999999999998877776677776644444443
No 92
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=67.60 E-value=7 Score=48.89 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccccc--eecCCCCccccchHHHHHHHHh----cc-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQMFG--RLDVATNDWTDGIFSALWRKTL----KL-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~LyG--~~d~~t~eW~dG~~~~~~r~~~----~~-~~~~ 986 (1282)
|.|+||||+.++|++++..-+. ++. .+-+++.+..+.-+. .+|..+ ..|+ .-+|++. .. ..+.
T Consensus 46 p~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~dv~~idgas---~~~v--ddIr~l~e~~~~~p~~~~ 119 (563)
T PRK06647 46 PRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSLDVIEIDGAS---NTSV--QDVRQIKEEIMFPPASSR 119 (563)
T ss_pred CCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCCCeEEecCcc---cCCH--HHHHHHHHHHHhchhcCC
Confidence 6889999999999999864321 110 111222222221111 122211 1221 2234332 11 2345
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
++=+|+|. +|-.--+..|..|. .-| ..|+++.+||=+.++....|+-.|||..+.|.+
T Consensus 120 ~KVvIIDE-a~~Ls~~a~naLLK--------~LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~ 177 (563)
T PRK06647 120 YRVYIIDE-VHMLSNSAFNALLK--------TIE--EPPPYIVFIFATTEVHKLPATIKSRCQHFNFRL 177 (563)
T ss_pred CEEEEEEC-hhhcCHHHHHHHHH--------hhc--cCCCCEEEEEecCChHHhHHHHHHhceEEEecC
Confidence 67788887 55554445555532 123 267889999988888877788899999998875
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.32 E-value=39 Score=40.01 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccc--hHHHHHHHHhcc-CCCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDG--IFSALWRKTLKL-KPGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG--~~~~~~r~~~~~-~~~~~~WivfDG 994 (1282)
|.|+|||+..+.+++.+..-+........++..+ .+|.. -..| -+..++.++... ..+.++=|++|.
T Consensus 47 ~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-------~l~~~---~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 47 PRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-------ELDAA---SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-------Eeccc---cCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 6899999999999887654221100000000000 11111 1122 123334333221 224467788886
Q ss_pred CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhc
Q psy9553 995 PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069 (1282)
Q Consensus 995 ~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~ 1069 (1282)
+|..--..+|+.|. +|.+ .|+++.+||-+.+.....|+--|||..|-+.+-. ..-+..|+.
T Consensus 117 -~~~l~~~~~~~ll~-----~le~-----~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~---~~~l~~~l~ 177 (367)
T PRK14970 117 -VHMLSSAAFNAFLK-----TLEE-----PPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT---IKDIKEHLA 177 (367)
T ss_pred -hhhcCHHHHHHHHH-----HHhC-----CCCceEEEEEeCCcccCCHHHHhcceeEecCCcc---HHHHHHHHH
Confidence 33332233444431 1111 2556788898888888888989999998887533 233445554
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.20 E-value=14 Score=46.00 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CCceeeeeccCCCCcc---cccceecCCCCccccchHHHHHHHHhc----c-CCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EPHREMRMNPKAITAA---QMFGRLDVATNDWTDGIFSALWRKTLK----L-KPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~~~~~~inpk~i~~~---~LyG~~d~~t~eW~dG~~~~~~r~~~~----~-~~~ 985 (1282)
|.|+||||+.+++++++..-. .++.. +-.-+.+..+ .++ .+|..++ .|+ .-+|++.. . ..+
T Consensus 46 p~G~GKTt~A~~lAk~l~c~~~~~~~pcg~-C~~C~~i~~~~~~d~~-ei~~~~~---~~v--d~ir~l~~~~~~~p~~~ 118 (527)
T PRK14969 46 TRGVGKTTLARILAKSLNCETGVTATPCGV-CSACLEIDSGRFVDLI-EVDAASN---TQV--DAMRELLDNAQYAPTRG 118 (527)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHhcCCCCcee-Eeecccc---CCH--HHHHHHHHHHhhCcccC
Confidence 689999999999999985421 11100 0000000000 111 1233321 232 12343322 2 234
Q ss_pred CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 986 ~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.++=+|+|. +|..-.+..|..|. .| | ..|+++.+||=+.|...--|.-.|||=.+.|.+-
T Consensus 119 ~~kVvIIDE-ad~ls~~a~naLLK---~L-----E--epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l 178 (527)
T PRK14969 119 RFKVYIIDE-VHMLSKSAFNAMLK---TL-----E--EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (527)
T ss_pred CceEEEEcC-cccCCHHHHHHHHH---HH-----h--CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCC
Confidence 467788887 77777777776652 12 1 1467899999888877766666999999998754
No 95
>PRK14526 adenylate kinase; Provisional
Probab=67.05 E-value=7.3 Score=42.19 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=41.5
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV----EEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~----~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+||||||..+.|++.+... |.-.+. -+++.+=.-..+...++.- .-=-|-+...++++..........||+ |
T Consensus 8 ~pGsGKsT~a~~La~~~~~~~is~G~llr~-~~~~~t~~g~~i~~~~~~g-~lvpd~~~~~lv~~~l~~~~~~~g~il-D 84 (211)
T PRK14526 8 PPGSGKGTIAKILSNELNYYHISTGDLFRE-NILNSTPLGKEIKQIVENG-QLVPDSITIKIVEDKINTIKNNDNFIL-D 84 (211)
T ss_pred CCCCCHHHHHHHHHHHhCCceeecChHHHH-hcccCChhhHHHHHHHHcC-ccCChHHHHHHHHHHHhcccccCcEEE-E
Confidence 68999999999998775321 100000 0111110001111111110 001233455666665544333456755 9
Q ss_pred C-CCChhhhhhhhhhc
Q psy9553 994 G-PVDSIWIENLNSVL 1008 (1282)
Q Consensus 994 G-~vd~~WiE~mnsvl 1008 (1282)
| |=...=++.+...+
T Consensus 85 GfPR~~~Qa~~l~~~~ 100 (211)
T PRK14526 85 GFPRNINQAKALDKFL 100 (211)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9 45666666665543
No 96
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=66.98 E-value=56 Score=39.33 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=48.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC-cccc--cceecCC--CCcc--ccchHHHHHHHHhcc-CCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT-AAQM--FGRLDVA--TNDW--TDGIFSALWRKTLKL-KPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~-~~~L--yG~~d~~--t~eW--~dG~~~~~~r~~~~~-~~~~~~W 989 (1282)
|.|+||||+..-|+..+.+.|..+-+...+|--.+ ..|| ||.--.. -... .| ...+.++.... .......
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~d--p~~i~~~~l~~~~~~~~Dv 185 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESD--PVKIASEGVEKFKKENFDI 185 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCC--HHHHHHHHHHHHHhCCCCE
Confidence 88999999999999988776655444434441111 1222 2211000 0000 11 12333332221 1234679
Q ss_pred EEEcC----CCChhhhhhhhhhcc
Q psy9553 990 LVLDG----PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 990 ivfDG----~vd~~WiE~mnsvlD 1009 (1282)
|++|. +.|..+++-|..+.+
T Consensus 186 ViIDTaGr~~~d~~lm~El~~i~~ 209 (429)
T TIGR01425 186 IIVDTSGRHKQEDSLFEEMLQVAE 209 (429)
T ss_pred EEEECCCCCcchHHHHHHHHHHhh
Confidence 99997 568889888887753
No 97
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=66.33 E-value=13 Score=43.05 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----C--------------c-eeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----P--------------H-REMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~--------------~-~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|.|.||+++.+.+++++..-+. + | .++.+.|.. | ..+--.-+|+
T Consensus 32 ~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-------~----------~~I~id~iR~ 94 (325)
T PRK06871 32 DSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID-------N----------KDIGVDQVRE 94 (325)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------C----------CCCCHHHHHH
Confidence 6889999999999999864321 1 1 133455520 0 0121223444
Q ss_pred Hhc-----cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 979 TLK-----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 979 ~~~-----~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
+.+ ...+.++-+|.|. +|..=.+.-|+.| |+|-=| |+++-+|+-+++...--|.-+|||=.+.|
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~-a~~m~~~AaNaLL---KtLEEP-------p~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQG-AERLTEAAANALL---KTLEEP-------RPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred HHHHHhhccccCCceEEEEec-hhhhCHHHHHHHH---HHhcCC-------CCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 332 1234567788886 5666666666775 444333 56788999888888888888999999999
Q ss_pred CCCCCCcHHHHHHHhccC
Q psy9553 1054 SSSGLDWSPIVAAWLRGR 1071 (1282)
Q Consensus 1054 ~~~~~~~~~~~~swl~~~ 1071 (1282)
.|-. ..-+..||...
T Consensus 164 ~~~~---~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPE---EQQALDWLQAQ 178 (325)
T ss_pred CCCC---HHHHHHHHHHH
Confidence 8653 24567788653
No 98
>KOG0989|consensus
Probab=66.26 E-value=7.3 Score=43.62 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=40.8
Q ss_pred ceEEEEcCCCChhhhhhhhh---hccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNS---VLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mns---vlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
.+=||||- +|..=-+.=++ +||+ .+.+++|+|=...++..=+.-+|||-=..|.+
T Consensus 130 fKiiIlDE-cdsmtsdaq~aLrr~mE~-------------~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 130 FKIIILDE-CDSMTSDAQAALRRTMED-------------FSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred ceEEEEec-hhhhhHHHHHHHHHHHhc-------------cccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 47899995 55443333333 2332 45689999999999999999999999999875
No 99
>KOG0933|consensus
Probab=65.99 E-value=4.2e+02 Score=34.88 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHH
Q psy9553 342 DNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLL 421 (1282)
Q Consensus 342 ~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~ 421 (1282)
..++....+++.+..++....|- ...+.+.-..-.+.++.+++..+.++.+-..++.++..+..|.+=+..+.
T Consensus 413 t~~k~a~~k~e~~~~elk~~e~e-----~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~-- 485 (1174)
T KOG0933|consen 413 TEIKQAKLKLEHLRKELKLREGE-----LATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLH-- 485 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH--
Confidence 33344444444454444443332 12222233334556777888888888888899999988888776555542
Q ss_pred HHHHHHHHHHHHHHHhhhccccccc
Q psy9553 422 QKLYKLYNDVIDRVSSYYDIPWGEV 446 (1282)
Q Consensus 422 ~~lW~~~~~~~~~~~~w~~~~~~~l 446 (1282)
.....+..........+.+.+|.--
T Consensus 486 ~~~~~lk~~~~~l~a~~~~~~f~Y~ 510 (1174)
T KOG0933|consen 486 EDIGRLKDELDRLLARLANYEFTYQ 510 (1174)
T ss_pred HHHHHHHHHHHHHHhhhcccccccC
Confidence 2334444444444444445555433
No 100
>PRK06762 hypothetical protein; Provisional
Probab=65.70 E-value=4.3 Score=41.99 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
+.||||||+.+.|++.+ +. ..+++++-.+-. ++++..+.....+.+ .+....|.+.. ....+|+||-..
T Consensus 10 ~~GsGKST~A~~L~~~l---~~--~~~~i~~D~~r~-~l~~~~~~~~~~~~~-~~~~~~~~~~~----~g~~vild~~~~ 78 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL---GR--GTLLVSQDVVRR-DMLRVKDGPGNLSID-LIEQLVRYGLG----HCEFVILEGILN 78 (166)
T ss_pred CCCCCHHHHHHHHHHHh---CC--CeEEecHHHHHH-HhccccCCCCCcCHH-HHHHHHHHHHh----CCCEEEEchhhc
Confidence 57899999999999887 21 244556654432 344444322222322 22233333221 235788898754
Q ss_pred h
Q psy9553 998 S 998 (1282)
Q Consensus 998 ~ 998 (1282)
+
T Consensus 79 ~ 79 (166)
T PRK06762 79 S 79 (166)
T ss_pred c
Confidence 3
No 101
>PHA02518 ParA-like protein; Provisional
Probab=65.33 E-value=9.5 Score=41.04 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|+||||+---|+.++.+.|.++-+..++|-.
T Consensus 11 GvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 11 GAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5999999999999999888777666678754
No 102
>PRK13973 thymidylate kinase; Provisional
Probab=65.32 E-value=13 Score=40.26 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQ 955 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~ 955 (1282)
+.||||||..+.|++.++..|.++ .++=.|..-..++
T Consensus 11 ~dGsGKtTq~~~l~~~l~~~g~~~-~~~~~p~~~~~g~ 47 (213)
T PRK13973 11 GEGAGKSTQIRLLAERLRAAGYDV-LVTREPGGSPGAE 47 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeE-EEEECCCCCchHH
Confidence 467999999999999998766543 2233665433333
No 103
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.30 E-value=7.8 Score=41.68 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCceeeeeccCCCCcccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE--EPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~--~~~~~~~inpk~i~~~~LyG 958 (1282)
++|||||++++++..++.... ..+++|+++||......+.+
T Consensus 46 ~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~~~~~ 88 (205)
T PF01580_consen 46 ATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLAPLAD 88 (205)
T ss_dssp -TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCGGGTT
T ss_pred CCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccchhhh
Confidence 688999999999998886542 45788999999766555443
No 104
>PRK07261 topology modulation protein; Provisional
Probab=65.23 E-value=11 Score=39.38 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++||||||+.+.|++.+
T Consensus 8 ~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 8 YSGSGKSTLARKLSQHY 24 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999988887654
No 105
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=65.10 E-value=8.2 Score=35.17 Aligned_cols=21 Identities=33% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHHHHhcCCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|+||||+...|+.++.+.|.+
T Consensus 9 G~Gktt~~~~l~~~l~~~g~~ 29 (99)
T cd01983 9 GVGKTTLAANLAAALAKRGKR 29 (99)
T ss_pred CCCHHHHHHHHHHHHHHCCCe
Confidence 799999999999999875543
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=64.85 E-value=19 Score=42.22 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-c-eeeeecc--CC--------CCcccc---cceecCCCCccccchHHHHHHHHhcc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-H-REMRMNP--KA--------ITAAQM---FGRLDVATNDWTDGIFSALWRKTLKL 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-~-~~~~inp--k~--------i~~~~L---yG~~d~~t~eW~dG~~~~~~r~~~~~ 982 (1282)
|.|.||||+.+.+++.+..-..+ . .....+| .+ -+-..+ ....|+.+.....+|--.-+|++...
T Consensus 53 ~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~ 132 (351)
T PRK09112 53 PEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHF 132 (351)
T ss_pred CCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHH
Confidence 78999999999999988542110 0 0000111 00 000111 11223333223333434455554431
Q ss_pred -----CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC
Q psy9553 983 -----KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 983 -----~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~ 1057 (1282)
..+.++-+|+|. +|..=.+..|.+| |+| |. -|++..+|+=+++...-.|...|||-.+.+.|-.
T Consensus 133 l~~~~~~g~~rVviIDe-Ad~l~~~aanaLL---k~L-----EE--pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~ 201 (351)
T PRK09112 133 LSQTSGDGNWRIVIIDP-ADDMNRNAANAIL---KTL-----EE--PPARALFILISHSSGRLLPTIRSRCQPISLKPLD 201 (351)
T ss_pred hhhccccCCceEEEEEc-hhhcCHHHHHHHH---HHH-----hc--CCCCceEEEEECChhhccHHHHhhccEEEecCCC
Confidence 234567788885 4444444455553 222 32 3567777887888878889999999999997633
Q ss_pred CCcHHHHHHHhcc
Q psy9553 1058 LDWSPIVAAWLRG 1070 (1282)
Q Consensus 1058 ~~~~~~~~swl~~ 1070 (1282)
..-+..|+..
T Consensus 202 ---~~~~~~~L~~ 211 (351)
T PRK09112 202 ---DDELKKALSH 211 (351)
T ss_pred ---HHHHHHHHHH
Confidence 2345666654
No 107
>PF05729 NACHT: NACHT domain
Probab=64.85 E-value=8.4 Score=39.36 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc----eeeeeccCCCCccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH----REMRMNPKAITAAQ 955 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~----~~~~inpk~i~~~~ 955 (1282)
+.|+||||+.+.++..+..-+... ..+.++.+......
T Consensus 8 ~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSN 49 (166)
T ss_pred CCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcc
Confidence 578999999999999887755322 22345555555543
No 108
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=64.49 E-value=9.4 Score=43.48 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC--ceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP--HREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~--~~~~~inp 948 (1282)
|+|+|||++.+.+++++..+|.. ...+.+++
T Consensus 66 ~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 66 NPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 89999999999999999887642 23444554
No 109
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.34 E-value=4.3e+02 Score=35.06 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.8
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHH
Q psy9553 653 IAKQLPKEAKRFSKIDKSWQKIMQ 676 (1282)
Q Consensus 653 I~~qLp~e~~~F~~vd~~~~~im~ 676 (1282)
++..|-.++...+.+.+++..-|.
T Consensus 643 ~~~~L~~~a~~l~~~~~~~v~pl~ 666 (806)
T PF05478_consen 643 LRNALKNEAQNLRAIQKELVSPLE 666 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHH
Confidence 667777888888887777654443
No 110
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=63.87 E-value=21 Score=36.90 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=65.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC------------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP------------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKT 979 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~------------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~ 979 (1282)
|.|+||+++...+++++-.-... ...+.++|..-.. ...-.-+-.+...+
T Consensus 27 ~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~------------~i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 27 PSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK------------SIKIDQIREIIEFL 94 (162)
T ss_dssp STTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS------------SBSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc------------hhhHHHHHHHHHHH
Confidence 68899999999999987442211 1123343332100 11100111222222
Q ss_pred hcc-CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 980 LKL-KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 980 ~~~-~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
... ..+.++=+|+|. +|..=.+.-|.+| |+|-= -|+++.+|+=+.+....-|.-.|||=.|++.|
T Consensus 95 ~~~~~~~~~KviiI~~-ad~l~~~a~NaLL---K~LEe-------pp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDE-ADKLTEEAQNALL---KTLEE-------PPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp TSS-TTSSSEEEEEET-GGGS-HHHHHHHH---HHHHS-------TTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred HHHHhcCCceEEEeeh-HhhhhHHHHHHHH---HHhcC-------CCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 222 223578889986 5555555556665 33322 24689999999999999999999999999875
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.78 E-value=11 Score=47.36 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----Cce----eeeecc---CCCCcccccceecCCCCccccchHHHHHHHHh----cc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHR----EMRMNP---KAITAAQMFGRLDVATNDWTDGIFSALWRKTL----KL 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~----~~~inp---k~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~----~~ 982 (1282)
|.|+||||+.++|++++..... ++. +..|++ .+...- .+|..+. -|| .-+|++. ..
T Consensus 43 p~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi----eidaas~---~gv--d~iRel~~~~~~~ 113 (584)
T PRK14952 43 PRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV----ELDAASH---GGV--DDTRELRDRAFYA 113 (584)
T ss_pred CCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE----Eeccccc---cCH--HHHHHHHHHHHhh
Confidence 7999999999999999875321 110 001221 111111 1233221 122 1223322 11
Q ss_pred -CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcH
Q psy9553 983 -KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWS 1061 (1282)
Q Consensus 983 -~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~ 1061 (1282)
..+.++=+|+|. +|-.=-+..|.+| |+|- ..|+++.+||=+.+....-|+-.|||-.+.|.+-. .
T Consensus 114 P~~~~~KVvIIDE-ah~Lt~~A~NALL---K~LE-------Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~---~ 179 (584)
T PRK14952 114 PAQSRYRIFIVDE-AHMVTTAGFNALL---KIVE-------EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLP---P 179 (584)
T ss_pred hhcCCceEEEEEC-CCcCCHHHHHHHH---HHHh-------cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCC---H
Confidence 234577888887 6666566667664 2221 25678999998888876677779999999998532 2
Q ss_pred HHHHHHhc
Q psy9553 1062 PIVAAWLR 1069 (1282)
Q Consensus 1062 ~~~~swl~ 1069 (1282)
.-+..|+.
T Consensus 180 ~~i~~~L~ 187 (584)
T PRK14952 180 RTMRALIA 187 (584)
T ss_pred HHHHHHHH
Confidence 33455654
No 112
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=63.61 E-value=13 Score=35.36 Aligned_cols=31 Identities=16% Similarity=0.002 Sum_probs=25.8
Q ss_pred CCCChhHHHHHHHHHHHhc-CCCceeeeeccC
Q psy9553 919 WLTRKTTCIHTLMAALSEV-EEPHREMRMNPK 949 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk 949 (1282)
-|.||||+-..|+.++... |..+-....||.
T Consensus 9 gg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 9 GGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 3689999999999999988 777766666776
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.60 E-value=16 Score=46.11 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=41.4
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+.++=||+|. +|-.=-+.+|.+|. +|-+ -++++.+||-+.++....|+-.|||-.+.|.+-
T Consensus 119 ~~~kVvIIDE-a~~L~~~a~naLLk-----~LEe-----pp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l 179 (585)
T PRK14950 119 ARYKVYIIDE-VHMLSTAAFNALLK-----TLEE-----PPPHAIFILATTEVHKVPATILSRCQRFDFHRH 179 (585)
T ss_pred CCeEEEEEeC-hHhCCHHHHHHHHH-----HHhc-----CCCCeEEEEEeCChhhhhHHHHhccceeeCCCC
Confidence 4567889997 33322334444421 1111 257888999999998888889999999999753
No 114
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=63.53 E-value=17 Score=37.80 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCC--CceeeeeccCCCCc----ccccceecC---CCCccccchHHHHHHHHhccCCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE--PHREMRMNPKAITA----AQMFGRLDV---ATNDWTDGIFSALWRKTLKLKPGDHV 988 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~--~~~~~~inpk~i~~----~~LyG~~d~---~t~eW~dG~~~~~~r~~~~~~~~~~~ 988 (1282)
+.|+||+.+.+.+ ...+. ......+|..+++- .+|||.-.. .....+-|+|.. + . .-
T Consensus 30 E~GtGK~~lA~~I----H~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~----A---~---~G 95 (168)
T PF00158_consen 30 ETGTGKELLARAI----HNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQ----A---N---GG 95 (168)
T ss_dssp STTSSHHHHHHHH----HHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHH----T---T---TS
T ss_pred CCCCcHHHHHHHH----HHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceee----c---c---ce
Confidence 6899999765544 44332 23456789888875 479998653 234556677644 2 1 22
Q ss_pred EEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEec
Q psy9553 989 WLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEP 1034 (1282)
Q Consensus 989 WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv 1034 (1282)
=+++|+ ...+..=+-|-.+|++++...+.+.+ ..+.++|+|+=+
T Consensus 96 tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~st 141 (168)
T PF00158_consen 96 TLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDK--PVPVDVRIIAST 141 (168)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSS--EEE--EEEEEEE
T ss_pred EEeecchhhhHHHHHHHHHHHHhhchhccccccc--cccccceEEeec
Confidence 488887 44555666667889998887776555 455689999844
No 115
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.41 E-value=11 Score=44.24 Aligned_cols=91 Identities=12% Similarity=-0.061 Sum_probs=50.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc-ccc--cceecCC-CCcccc-chHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA-AQM--FGRLDVA-TNDWTD-GIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~-~~L--yG~~d~~-t~eW~d-G~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|.|+||||+...|+..+..-|..+-.+..+|=.+.. +|| ||..-.. ...=.| .=+...++.+. ..+....|+.
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~--~~~~~D~VLI 291 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT--YVNCVDHILI 291 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH--hcCCCCEEEE
Confidence 789999999999988775555555555666644321 222 2221100 000011 11222223222 1134578999
Q ss_pred cCC----CChhhhhhhhhhccC
Q psy9553 993 DGP----VDSIWIENLNSVLDD 1010 (1282)
Q Consensus 993 DG~----vd~~WiE~mnsvlDd 1010 (1282)
|.+ .|..+++-|...++.
T Consensus 292 DTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 292 DTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred ECCCCCccCHHHHHHHHHHhhc
Confidence 974 788999988887654
No 116
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=63.04 E-value=6.1 Score=43.65 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=28.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWT 968 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~ 968 (1282)
|+||||||..+.+.+=+...|.++.+.=++|-+-... ...|-+.||+-
T Consensus 4 paGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~---y~~~iDird~i 51 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLP---YPPDIDIRDLI 51 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--S---S--SEEGGGT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccc---cCchHHHHhhh
Confidence 7899999999999998888877776666888776432 13334445554
No 117
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=62.98 E-value=14 Score=39.71 Aligned_cols=21 Identities=29% Similarity=-0.023 Sum_probs=18.5
Q ss_pred CCCChhHHHHHHHHHHHhcCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
-|+||||..+.|.+.+..-|.
T Consensus 12 DGaGKTT~~~~L~~~l~~~g~ 32 (208)
T COG0125 12 DGAGKTTQAELLKERLEERGI 32 (208)
T ss_pred CCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999988765
No 118
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=62.86 E-value=2.4e+02 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 367 GLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPE-LAQIRKELNLLQKLYKLYNDVIDRVS 436 (1282)
Q Consensus 367 ~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~-L~~l~~el~~~~~lW~~~~~~~~~~~ 436 (1282)
+.....++..+.+...++.++.++.. ....-.|+.+..+|-. +..++.-|....++|..+......+.
T Consensus 75 ~~~Ls~als~laev~~~i~~~~~~qa--~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~ 143 (234)
T cd07665 75 NTALSRALSQLAEVEEKIEQLHQEQA--NNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQ 143 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456788888887777776654322 2233457777777765 45677788888888888877765544
No 119
>PLN02796 D-glycerate 3-kinase
Probab=62.66 E-value=11 Score=43.81 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.2
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|...+...+
T Consensus 108 ~sGSGKSTLa~~L~~lL~~~g 128 (347)
T PLN02796 108 PQGCGKTTLVFALVYLFNATG 128 (347)
T ss_pred CCCCcHHHHHHHHHHHhcccC
Confidence 799999999999999886544
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=62.64 E-value=22 Score=46.43 Aligned_cols=105 Identities=23% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeec----cCCCCcccccceecCCCCcc-ccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMN----PKAITAAQMFGRLDVATNDW-TDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~in----pk~i~~~~LyG~~d~~t~eW-~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|++++. .+ ...+| ...-+...|.|...- --.. ..|.++..+|+. ...=++|
T Consensus 492 p~GvGKT~lA~~la~~l~---~~--~~~~d~se~~~~~~~~~lig~~~g-yvg~~~~~~l~~~~~~~------p~~Vvll 559 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALG---VH--LERFDMSEYMEKHTVSRLIGAPPG-YVGFEQGGLLTEAVRKH------PHCVLLL 559 (731)
T ss_pred CCCccHHHHHHHHHHHhc---CC--eEEEeCchhhhcccHHHHhcCCCC-CcccchhhHHHHHHHhC------CCeEEEE
Confidence 799999999999999873 22 22222 112233345543210 0011 256777776642 1357899
Q ss_pred cC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCC
Q psy9553 993 DG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI 1037 (1282)
Q Consensus 993 DG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL 1037 (1282)
|. ..+|.=...|-.+||+++ +|-..|.++.+.+. +++-++|+
T Consensus 560 DEieka~~~~~~~Ll~~ld~g~-~~d~~g~~vd~~~~--iii~Tsn~ 603 (731)
T TIGR02639 560 DEIEKAHPDIYNILLQVMDYAT-LTDNNGRKADFRNV--ILIMTSNA 603 (731)
T ss_pred echhhcCHHHHHHHHHhhccCe-eecCCCcccCCCCC--EEEECCCc
Confidence 97 333444444556677655 57777888777643 33335555
No 121
>PRK10037 cell division protein; Provisional
Probab=62.35 E-value=9.5 Score=42.53 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
|.||||+.--|+.++.+.|..+-+..++|=. +....||
T Consensus 12 GvGKTT~a~nLA~~La~~G~rVLlID~D~q~-~~s~~~g 49 (250)
T PRK10037 12 GVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFN 49 (250)
T ss_pred CccHHHHHHHHHHHHHhcCCcEEEEeCChhh-hHHHHhC
Confidence 6899999999999999988876666677753 3334444
No 122
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=62.16 E-value=9.1 Score=37.36 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA 953 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~ 953 (1282)
|+|+||||+.+.|+..+...+ ..++.+++.....
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 10 PPGSGKTTLARALARELGPPG--GGVIYIDGEDILE 43 (148)
T ss_pred CCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc
Confidence 789999999999988776543 2344455554443
No 123
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.12 E-value=9.9 Score=46.48 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=63.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcccc--cceecCCCCccccchHHHHHHHHh---c-c-CCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAAQM--FGRLDVATNDWTDGIFSALWRKTL---K-L-KPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~~L--yG~~d~~t~eW~dG~~~~~~r~~~---~-~-~~~~ 986 (1282)
|.|+||||+.+++++++..... ++.. +-++..+..+.. +-.+|+.. ..|+ .-+|++. . . ..+.
T Consensus 44 PpGtGKTTlA~~lA~~l~~~~~~~~~pc~~-c~~c~~i~~g~~~dv~el~aa~---~~gi--d~iR~i~~~~~~~p~~~~ 117 (472)
T PRK14962 44 PRGTGKTTVARILAKSLNCENRKGVEPCNE-CRACRSIDEGTFMDVIELDAAS---NRGI--DEIRKIRDAVGYRPMEGK 117 (472)
T ss_pred CCCCCHHHHHHHHHHHhccccCCCCCCCcc-cHHHHHHhcCCCCccEEEeCcc---cCCH--HHHHHHHHHHhhChhcCC
Confidence 6999999999999999864221 1110 112222222221 22334322 1232 1233322 1 1 2234
Q ss_pred ceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 987 HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
++=+|+|- +|..=-+..|..|. +|- ..++++.++|=+.+.....|+-.|||.+|.+.+-
T Consensus 118 ~kVvIIDE-~h~Lt~~a~~~LLk-----~LE-----~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l 176 (472)
T PRK14962 118 YKVYIIDE-VHMLTKEAFNALLK-----TLE-----EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNI 176 (472)
T ss_pred eEEEEEEC-hHHhHHHHHHHHHH-----HHH-----hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCc
Confidence 56778886 33332222333321 111 1245667777776666778899999999998754
No 124
>PRK06217 hypothetical protein; Validated
Probab=61.97 E-value=9.2 Score=40.35 Aligned_cols=17 Identities=24% Similarity=-0.033 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++||||||+.+.|++.+
T Consensus 9 ~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 9 ASGSGTTTLGAALAERL 25 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57899999999998865
No 125
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=61.82 E-value=9.9 Score=42.47 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|+||||+.-.|+.++...|..+-...+||..=+...++|.
T Consensus 11 GGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~ 51 (261)
T TIGR01968 11 GGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGL 51 (261)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCC
Confidence 36999999999999999888776666778754344445553
No 126
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=61.81 E-value=12 Score=38.86 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=48.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccc-------c-eecCCCCccccchHHHHHHHHhcc-CCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMF-------G-RLDVATNDWTDGIFSALWRKTLKL-KPGDHV 988 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~Ly-------G-~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~ 988 (1282)
|+|+||||+...|+.++...|..+-+...+|-..+..+.+ | .+-+...+ .| .+.++++.... ......
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d 84 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEG-KD--PVSIAKRAIEHAREENFD 84 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCC-CC--HHHHHHHHHHHHHhCCCC
Confidence 6889999999999998877665444444444322211111 1 00011111 11 23333333221 223456
Q ss_pred EEEEcCCC----Chhhhhhhhhhc
Q psy9553 989 WLVLDGPV----DSIWIENLNSVL 1008 (1282)
Q Consensus 989 WivfDG~v----d~~WiE~mnsvl 1008 (1282)
+||+|.|- |+.+++.|....
T Consensus 85 ~viiDt~g~~~~~~~~l~~l~~l~ 108 (173)
T cd03115 85 VVIVDTAGRLQIDENLMEELKKIK 108 (173)
T ss_pred EEEEECcccchhhHHHHHHHHHHH
Confidence 99999764 568999886654
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=61.58 E-value=14 Score=43.60 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
+.++-+|+|. +|..=-+..|..|. +|.+ .|+++.+||-+.++..-.|+..|||-.+.+.+
T Consensus 116 ~~~~vviide-a~~l~~~~~~~Ll~-----~le~-----~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 175 (355)
T TIGR02397 116 GKYKVYIIDE-VHMLSKSAFNALLK-----TLEE-----PPEHVVFILATTEPHKIPATILSRCQRFDFKR 175 (355)
T ss_pred CCceEEEEeC-hhhcCHHHHHHHHH-----HHhC-----CccceeEEEEeCCHHHHHHHHHhheeEEEcCC
Confidence 4567889997 33222233343332 1111 35778899988888777788899998887764
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.22 E-value=14 Score=46.65 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+.++=+|+|. +|-.=.+..|.+| | +|- .-|+++.+||=+.+....-|+-.|||-.|.|.+-
T Consensus 118 ~~~KVvIIde-v~~Lt~~a~naLL---k--~LE-----epp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l 178 (576)
T PRK14965 118 SRYKIFIIDE-VHMLSTNAFNALL---K--TLE-----EPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178 (576)
T ss_pred CCceEEEEEC-hhhCCHHHHHHHH---H--HHH-----cCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCC
Confidence 4567788897 4444344444443 1 221 1367899999888887776777999999998754
No 129
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=61.21 E-value=17 Score=47.19 Aligned_cols=97 Identities=23% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC----CcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI----TAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i----~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||.+.+.|++++. .+ ..++|-... +...|+|.-.--.+....|.++..+|+. ...=|+||
T Consensus 496 P~GvGKT~lAk~LA~~l~---~~--~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~------p~sVlllD 564 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALG---IE--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH------PHAVLLLD 564 (758)
T ss_pred CCCCCHHHHHHHHHHHhC---CC--cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC------CCcEEEec
Confidence 799999999999999873 22 333443222 3567888521111234567888877652 12458888
Q ss_pred C--CCChhhhhhhhhhccCCccccccCCCeeecCC
Q psy9553 994 G--PVDSIWIENLNSVLDDNRTLTLANGDRLSMAL 1026 (1282)
Q Consensus 994 G--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~ 1026 (1282)
- -.++.=...|-.+||++ .+|-..|..+.+.+
T Consensus 565 Eieka~~~v~~~LLq~ld~G-~ltd~~g~~vd~rn 598 (758)
T PRK11034 565 EIEKAHPDVFNLLLQVMDNG-TLTDNNGRKADFRN 598 (758)
T ss_pred cHhhhhHHHHHHHHHHHhcC-eeecCCCceecCCC
Confidence 7 22333333444566654 45666777665543
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.02 E-value=13 Score=49.06 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc--CCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP--KAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp--k~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~ 995 (1282)
|+|+|||++.++|++.+..-+.+.....+.. ...+...|+|.-.-..+-=..|.++..+|..-.. +++=.+
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~-------vLllDE 678 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYS-------VILLDE 678 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCC-------eEEEee
Q ss_pred CChhhhhhhhhhcc--CCccccccCCCeeecCCCCeEEEecCCC--------------------------CCCCccchhc
Q psy9553 996 VDSIWIENLNSVLD--DNRTLTLANGDRLSMALAVKIIFEPHNI--------------------------DNASPATVSR 1047 (1282)
Q Consensus 996 vd~~WiE~mnsvlD--dnk~L~L~ngeri~l~~~~~~~FEv~dL--------------------------~~asPAtvSR 1047 (1282)
++..=-+-.|.+|. |+..++-..|.++.+.+.+-++ ++++ .+-.|+-++|
T Consensus 679 ieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~--TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnR 756 (857)
T PRK10865 679 VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM--TSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINR 756 (857)
T ss_pred hhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE--eCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHh
Q ss_pred c-cccccCC
Q psy9553 1048 N-GMVYMSS 1055 (1282)
Q Consensus 1048 c-gmvy~~~ 1055 (1282)
| .+|.|.|
T Consensus 757 ld~iivF~P 765 (857)
T PRK10865 757 IDEVVVFHP 765 (857)
T ss_pred CCeeEecCC
No 131
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.80 E-value=12 Score=46.91 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=71.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCC---------CceeeeeccCCCCcc---cccceecCCCCccccch--HHHHHHHHhcc-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE---------PHREMRMNPKAITAA---QMFGRLDVATNDWTDGI--FSALWRKTLKL- 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~---------~~~~~~inpk~i~~~---~LyG~~d~~t~eW~dG~--~~~~~r~~~~~- 982 (1282)
|.|+||||+.++|++++..-+. ++-. +=+-+.|..+ .++ .+|..+ .-|| +-.++.++...
T Consensus 46 P~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~-C~sC~~I~aG~hpDvi-EIdAas---~~gVDdIReLie~~~~~P 120 (700)
T PRK12323 46 TRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ-CRACTEIDAGRFVDYI-EMDAAS---NRGVDEMAQLLDKAVYAP 120 (700)
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc-cHHHHHHHcCCCCcce-Eecccc---cCCHHHHHHHHHHHHhch
Confidence 6899999999999999965211 0000 0000001110 111 233322 1233 12223332222
Q ss_pred CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 983 KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 983 ~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
..+.++=+|+|. +|..=-+..|..| |+|-= =|+++.|||=+.+.....|.-.|||=.+.|.+-
T Consensus 121 ~~gr~KViIIDE-ah~Ls~~AaNALL---KTLEE-------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~l 183 (700)
T PRK12323 121 TAGRFKVYMIDE-VHMLTNHAFNAML---KTLEE-------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 183 (700)
T ss_pred hcCCceEEEEEC-hHhcCHHHHHHHH---Hhhcc-------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCC
Confidence 234467788886 6666666666665 22211 356899999999999999999999998888754
No 132
>PRK03918 chromosome segregation protein; Provisional
Probab=60.41 E-value=5.6e+02 Score=34.37 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9553 414 IRKELNLLQKLYKLYNDVIDRV 435 (1282)
Q Consensus 414 l~~el~~~~~lW~~~~~~~~~~ 435 (1282)
...++..+.....-+......+
T Consensus 491 ~~~~l~~l~~~~~~~~~l~~~l 512 (880)
T PRK03918 491 KESELIKLKELAEQLKELEEKL 512 (880)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444
No 133
>KOG1534|consensus
Probab=59.82 E-value=6.5 Score=41.40 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~ 952 (1282)
|.||||||-.+++..-...+|+..+++-++|-|..
T Consensus 11 pAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 11 PAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH 45 (273)
T ss_pred cCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence 78999999999999999999998888878887654
No 134
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.81 E-value=15 Score=46.06 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----Cceee-----eeccCCCCcccccceecCCCCccccchHH-HHHHHHhc--cCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREM-----RMNPKAITAAQMFGRLDVATNDWTDGIFS-ALWRKTLK--LKPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~-----~inpk~i~~~~LyG~~d~~t~eW~dG~~~-~~~r~~~~--~~~~ 985 (1282)
|.|+||||+.++|++++..-.. ++... +.+-.....-+ +|..+ .-||=. +-+++.+. ...+
T Consensus 46 PpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e----Id~a~---~~~Id~iR~L~~~~~~~p~~g 118 (624)
T PRK14959 46 TRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE----IDGAS---NRGIDDAKRLKEAIGYAPMEG 118 (624)
T ss_pred CCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE----Eeccc---ccCHHHHHHHHHHHHhhhhcC
Confidence 6899999999999999864211 11000 01111111111 12221 123311 11222221 1234
Q ss_pred CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 986 ~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.++-||+|- +|..=-+..|++|. .|-= -++++.+||=+.+.....|.-.|||-.+.|.+-
T Consensus 119 ~~kVIIIDE-ad~Lt~~a~naLLk---~LEE-------P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pL 178 (624)
T PRK14959 119 RYKVFIIDE-AHMLTREAFNALLK---TLEE-------PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRL 178 (624)
T ss_pred CceEEEEEC-hHhCCHHHHHHHHH---Hhhc-------cCCCEEEEEecCChhhhhHHHHhhhhccccCCC
Confidence 578999997 45444455566642 1111 235688888777666665666899999888754
No 135
>PTZ00088 adenylate kinase 1; Provisional
Probab=59.61 E-value=9.1 Score=41.98 Aligned_cols=18 Identities=17% Similarity=-0.143 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||.-+.|++.+.
T Consensus 14 ~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 14 APGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999998763
No 136
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=59.58 E-value=16 Score=43.78 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=32.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.-|.||||+--.|+.++...|..+-+..++|-+ +....+|.
T Consensus 113 KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~ 153 (387)
T TIGR03453 113 KGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGY 153 (387)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCC
Confidence 457999999999999999888777777788865 55666664
No 137
>PRK00698 tmk thymidylate kinase; Validated
Probab=59.29 E-value=12 Score=40.14 Aligned_cols=21 Identities=24% Similarity=0.019 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||..+.|++.+...|
T Consensus 11 ~~gsGKsT~~~~L~~~l~~~~ 31 (205)
T PRK00698 11 IDGAGKSTQIELLKELLEQQG 31 (205)
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999987665
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.24 E-value=15 Score=46.50 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc-------CCCCcc---cccceecCCCCccccchHHHHHHHHhcc-----
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP-------KAITAA---QMFGRLDVATNDWTDGIFSALWRKTLKL----- 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp-------k~i~~~---~LyG~~d~~t~eW~dG~~~~~~r~~~~~----- 982 (1282)
|.|+||||+.+.+++++....... ...+| +.+..+ .++ .+|.. ...|+ .-+|++...
T Consensus 46 p~G~GKttlA~~lAk~L~c~~~~~--~~~~~Cg~C~~C~~i~~g~h~D~~-ei~~~---~~~~v--d~IReii~~a~~~p 117 (620)
T PRK14948 46 PRGTGKTSSARILAKSLNCLNSDK--PTPEPCGKCELCRAIAAGNALDVI-EIDAA---SNTGV--DNIRELIERAQFAP 117 (620)
T ss_pred CCCCChHHHHHHHHHHhcCCCcCC--CCCCCCcccHHHHHHhcCCCccEE-EEecc---ccCCH--HHHHHHHHHHhhCh
Confidence 689999999999999986431100 00000 000000 000 11221 12332 344555432
Q ss_pred CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 983 KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 983 ~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
..+.++=||+|. +|..=-+..|++|. .|- .-|+++.+||=+.|....-|+-.|||.++.|.+-
T Consensus 118 ~~~~~KViIIDE-ad~Lt~~a~naLLK---~LE-------ePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l 180 (620)
T PRK14948 118 VQARWKVYVIDE-CHMLSTAAFNALLK---TLE-------EPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 (620)
T ss_pred hcCCceEEEEEC-ccccCHHHHHHHHH---HHh-------cCCcCeEEEEEeCChhhhhHHHHhheeEEEecCC
Confidence 124467788887 44444444455531 111 2346678888888877778888999999988743
No 139
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.76 E-value=10 Score=42.87 Aligned_cols=31 Identities=19% Similarity=-0.017 Sum_probs=23.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|.|+||||+..-|+..+...|..+-+...+|
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 8999999999999998877665544444555
No 140
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=58.65 E-value=8.6 Score=40.51 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999875
No 141
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.99 E-value=7.3 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.061 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++.+
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999977
No 142
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=57.53 E-value=20 Score=45.16 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
+.++=||+|- +|..-.+..|.+|. +|- ..|+++.+||=+.+.....|.-.|||-.+-|.+-. ..-+
T Consensus 131 a~~KVvIIDE-ad~Ls~~a~naLLK-----tLE-----ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~---~~el 196 (598)
T PRK09111 131 ARYKVYIIDE-VHMLSTAAFNALLK-----TLE-----EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIE---ADVL 196 (598)
T ss_pred CCcEEEEEEC-hHhCCHHHHHHHHH-----HHH-----hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCC---HHHH
Confidence 4567788886 55554444555541 221 25678999999888888777788999888776422 1334
Q ss_pred HHHhcc
Q psy9553 1065 AAWLRG 1070 (1282)
Q Consensus 1065 ~swl~~ 1070 (1282)
..|+.+
T Consensus 197 ~~~L~~ 202 (598)
T PRK09111 197 AAHLSR 202 (598)
T ss_pred HHHHHH
Confidence 556544
No 143
>PF13173 AAA_14: AAA domain
Probab=57.18 E-value=15 Score=36.14 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=42.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecC-CCCccccchHHHHHHHHhccCCCCceEEEEcC-C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDV-ATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG-P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~-~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG-~ 995 (1282)
|.++||||+++-+++.+. ......| +| +|- ..+...+.=+...+++.. .+...+|++|- +
T Consensus 10 ~R~vGKTtll~~~~~~~~--~~~~~~y-i~------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iDEiq 71 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLL--PPENILY-IN------------FDDPRDRRLADPDLLEYFLELI---KPGKKYIFIDEIQ 71 (128)
T ss_pred CCCCCHHHHHHHHHHHhc--cccccee-ec------------cCCHHHHHHhhhhhHHHHHHhh---ccCCcEEEEehhh
Confidence 677999999988887664 1111111 11 110 001111100333343332 12567899986 5
Q ss_pred CChhhhhhhhhhccCC
Q psy9553 996 VDSIWIENLNSVLDDN 1011 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdn 1011 (1282)
--|.|.+.++...|+.
T Consensus 72 ~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 72 YLPDWEDALKFLVDNG 87 (128)
T ss_pred hhccHHHHHHHHHHhc
Confidence 5578999999999964
No 144
>KOG0996|consensus
Probab=57.00 E-value=6.4e+02 Score=33.98 Aligned_cols=57 Identities=5% Similarity=0.134 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy9553 301 DKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQD---LADNLAQFRQDKVDYCHE 357 (1282)
Q Consensus 301 ~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~---L~~~~~~f~~~i~~~~~~ 357 (1282)
|+..-.........|.++.......+..+.+.+..+.+. +..++....+++..+..+
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333334455666778888877777777777766665543 334444444444444433
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=56.77 E-value=5 Score=48.72 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV- 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v- 996 (1282)
|.|+|||.+.+.++..+...+...+++.++...+ +.++...+.. |-... +++... .....+++|-+=
T Consensus 138 ~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f-~~~~~~~~~~-------~~~~~-f~~~~~---~~~dvLlIDDi~~ 205 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-LNDLVDSMKE-------GKLNE-FREKYR---KKVDVLLIDDVQF 205 (440)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHHhc-------ccHHH-HHHHHH---hcCCEEEEechhh
Confidence 8999999999999988765433334443443211 1112111110 11111 121111 124589999742
Q ss_pred --C-----hhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc---ccccCCCCC
Q psy9553 997 --D-----SIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG---MVYMSSSGL 1058 (1282)
Q Consensus 997 --d-----~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg---mvy~~~~~~ 1058 (1282)
+ ....+-+|...+.++.+-+.+.. ...+|....|..+||++ +|-++|-+.
T Consensus 206 l~~~~~~q~elf~~~n~l~~~~k~iIitsd~------------~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDR------------EPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHHcCCeEEEECCC------------CHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 1 13445567777766654443321 12345667789999997 666766554
No 146
>PRK14527 adenylate kinase; Provisional
Probab=56.59 E-value=14 Score=39.24 Aligned_cols=18 Identities=22% Similarity=-0.014 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||..+.|++.+.
T Consensus 14 ~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 14 PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999987663
No 147
>KOG0991|consensus
Probab=56.29 E-value=7.5 Score=41.61 Aligned_cols=17 Identities=41% Similarity=0.169 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+||||++.+|+++|
T Consensus 56 pPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 56 PPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCchhhHHHHHHHHH
Confidence 89999999999999986
No 148
>KOG4286|consensus
Probab=56.09 E-value=1.3e+02 Score=37.67 Aligned_cols=93 Identities=15% Similarity=0.283 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--------CC---CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCC
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDRT--------IT---DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPV 300 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~~--------p~---~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l 300 (1282)
+.+.+++.++...+++....|... |. -++++...++.+..+++++..+...+..+.+.-.-|.-.++.+
T Consensus 223 ~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~l 302 (966)
T KOG4286|consen 223 DETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQL 302 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCC
Confidence 334445555555555555555431 21 2577888888888888888888888888888877777778888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 301 DKEDLEQVDSLRYTWQKLLARAMT 324 (1282)
Q Consensus 301 ~~e~~~~~~~l~~~w~~l~~~~~~ 324 (1282)
+.....+++.+..+|..+...+..
T Consensus 303 s~~~~~~le~~n~rwk~Lq~SV~~ 326 (966)
T KOG4286|consen 303 SPYNLSTLEDLNTRWKLLQVSVPD 326 (966)
T ss_pred ChhhHhhHHHHHHHHHHHHHHHHH
Confidence 888888899999999988766544
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=55.96 E-value=29 Score=40.47 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=66.0
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCcee-------------------------------eeeccCCCCcccccceecC
Q psy9553 918 QWLTRKTTCIHTLMAALSEV----EEPHRE-------------------------------MRMNPKAITAAQMFGRLDV 962 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~----~~~~~~-------------------------------~~inpk~i~~~~LyG~~d~ 962 (1282)
|.|+||||+.++++..+... +.+... .. =|=.+|-+.|+|.+|.
T Consensus 33 ~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d~l~G~~d~ 111 (337)
T TIGR02030 33 DRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATEDRVCGTLDI 111 (337)
T ss_pred CCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCcccceecchhH
Confidence 68999999999999887431 111110 01 2334555678888773
Q ss_pred C----CCc--cccchHHHHHHHHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEec
Q psy9553 963 A----TND--WTDGIFSALWRKTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEP 1034 (1282)
Q Consensus 963 ~----t~e--W~dG~~~~~~r~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv 1034 (1282)
. +++ +..|++.. .++-.+++|- ..++.=...|=.+|+++..-.-..|...+++..+.++--.
T Consensus 112 ~~~l~~g~~~~~~GlL~~----------A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~ 181 (337)
T TIGR02030 112 ERALTEGVKAFEPGLLAR----------ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSG 181 (337)
T ss_pred hhHhhcCCEEeecCccee----------ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecc
Confidence 2 233 34444421 1123566664 2233223333345666643333456666777665555443
Q ss_pred CCCC--CCCccchhccccc
Q psy9553 1035 HNID--NASPATVSRNGMV 1051 (1282)
Q Consensus 1035 ~dL~--~asPAtvSRcgmv 1051 (1282)
|+. .-.|+-..|.+|.
T Consensus 182 -np~eg~l~~~LldRf~l~ 199 (337)
T TIGR02030 182 -NPEEGELRPQLLDRFGLH 199 (337)
T ss_pred -ccccCCCCHHHHhhcceE
Confidence 332 3567888888874
No 150
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=55.86 E-value=36 Score=39.91 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee-----cCCCCccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL-----DVATNDWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~-----d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+||||||+++.|...+........+..=+|-.+....-.+.+ ...... +...+|.+.. .+..+|++
T Consensus 130 ~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~-----~~~~l~~~lr---~~pd~i~v 201 (343)
T TIGR01420 130 PTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLS-----FANALRAALR---EDPDVILI 201 (343)
T ss_pred CCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcC-----HHHHHHHhhc---cCCCEEEE
Confidence 7999999999998887653222222222244322111000000 111122 3444444432 34578999
Q ss_pred cCCCChhhhh
Q psy9553 993 DGPVDSIWIE 1002 (1282)
Q Consensus 993 DG~vd~~WiE 1002 (1282)
|=.-|++=+.
T Consensus 202 gEird~~~~~ 211 (343)
T TIGR01420 202 GEMRDLETVE 211 (343)
T ss_pred eCCCCHHHHH
Confidence 9988876443
No 151
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=55.61 E-value=9.5 Score=32.31 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||++..++-+|.
T Consensus 31 ~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 31 PNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 678999999888887764
No 152
>PRK10536 hypothetical protein; Provisional
Probab=55.39 E-value=13 Score=41.18 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=29.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVAT 964 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t 964 (1282)
|.|+|||++...++...-.-+.-.++++.+|- ++.++.+|++ |-+
T Consensus 82 ~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~-v~~ge~LGfL-PG~ 126 (262)
T PRK10536 82 EAGCGKTWISAAKAAEALIHKDVDRIIVTRPV-LQADEDLGFL-PGD 126 (262)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC-CCchhhhCcC-CCC
Confidence 79999999877766632111332345555664 5889999988 544
No 153
>PRK04195 replication factor C large subunit; Provisional
Probab=55.01 E-value=36 Score=42.00 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC--C-CCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK--P-GDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~--~-~~~~WivfDG 994 (1282)
|+|+||||+.++|++.+. ..+..+|+-.. .+ -.++..++..++... . ..++-||+|.
T Consensus 47 ppG~GKTtla~ala~el~-----~~~ielnasd~-----------r~----~~~i~~~i~~~~~~~sl~~~~~kvIiIDE 106 (482)
T PRK04195 47 PPGVGKTSLAHALANDYG-----WEVIELNASDQ-----------RT----ADVIERVAGEAATSGSLFGARRKLILLDE 106 (482)
T ss_pred CCCCCHHHHHHHHHHHcC-----CCEEEEccccc-----------cc----HHHHHHHHHHhhccCcccCCCCeEEEEec
Confidence 799999999999988762 22334454211 01 113333333333221 1 2467899886
Q ss_pred CCCh-------hhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCc-cchhcccccccCCCC
Q psy9553 995 PVDS-------IWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASP-ATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 995 ~vd~-------~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asP-AtvSRcgmvy~~~~~ 1057 (1282)
+|. ..++.+...++. +++.+|+=..+.....| .--|||-.|.|.+-.
T Consensus 107 -aD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~ 161 (482)
T PRK04195 107 -VDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDPYDPSLRELRNACLMIEFKRLS 161 (482)
T ss_pred -CcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCccccchhhHhccceEEEecCCC
Confidence 433 334444444432 23456665666655566 456899999998643
No 154
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=54.93 E-value=19 Score=38.12 Aligned_cols=17 Identities=29% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++||||||+.+.|++.+
T Consensus 7 ~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 7 VTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57899999999999886
No 155
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.26 E-value=7 Score=45.42 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||++++++.
T Consensus 39 PSGcGKTTlLR~IAG 53 (352)
T COG3842 39 PSGCGKTTLLRMIAG 53 (352)
T ss_pred CCCCCHHHHHHHHhC
Confidence 899999999999876
No 156
>PRK08181 transposase; Validated
Probab=53.68 E-value=16 Score=41.08 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred HHHHhcCCcEEEecCCCCC
Q psy9553 1264 NCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1264 ~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+.++..+.+++|+||+|||
T Consensus 100 ~~~~~~~~nlll~Gp~GtG 118 (269)
T PRK08181 100 DSWLAKGANLLLFGPPGGG 118 (269)
T ss_pred HHHHhcCceEEEEecCCCc
Confidence 4467889999999999999
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.61 E-value=3.3e+02 Score=35.30 Aligned_cols=123 Identities=11% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhH-HHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy9553 256 ITDLDDVRMIMELLKRIRDQE-VDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQP 334 (1282)
Q Consensus 256 p~~leel~e~~~~i~~i~~~~-~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~ 334 (1282)
|.+.+-+.-+..+.+.++++. ...+.-...++....+|.... +.....+..+...-..+. +.-+...+
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~----e~Ql~~L~~l~e~~~~l~-------~~ae~Lae 600 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQK----EQQLKELQELQEERKSLR-------ESAEKLAE 600 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 334455555555555566553 334444455555555554211 111222222222222222 11122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 335 RFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKL 391 (1282)
Q Consensus 335 ~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~ 391 (1282)
++ +.+.+..+.+.++++.+........|..... -.+..+.|+.++.+++.++...
T Consensus 601 R~-e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A-Er~~~~EL~~~~~~l~~l~~si 655 (717)
T PF10168_consen 601 RY-EEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA-EREFKKELERMKDQLQDLKASI 655 (717)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3345556777777777777666655643211 1223344444444444444333
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=53.05 E-value=40 Score=42.94 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----CceeeeeccCCCCc------ccccceecCCCCccccchHHHH---HHHHhccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----PHREMRMNPKAITA------AQMFGRLDVATNDWTDGIFSAL---WRKTLKLK 983 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~~~~~~inpk~i~~------~~LyG~~d~~t~eW~dG~~~~~---~r~~~~~~ 983 (1282)
|.|+||||+.+++......... ....+.+|.-.+.. ..++|.. .++..... ++......
T Consensus 183 p~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-------~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 183 PPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-------HDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc-------cHHHHHHHHHHHHHcCCCc
Confidence 7999999999998776543321 12334455443321 2455542 22222111 11100000
Q ss_pred -------CCCceEEEEcC--CCChhhhhhhhhhccCCccccccCC------Cee--------e--cCCCCeEEE-ecCCC
Q psy9553 984 -------PGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANG------DRL--------S--MALAVKIIF-EPHNI 1037 (1282)
Q Consensus 984 -------~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ng------eri--------~--l~~~~~~~F-Ev~dL 1037 (1282)
.-..-=+++|. .+|+.=.+.|-.+|.+.+.+ +.+| +.+ . -+..+.++. -+.+.
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~-~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE-FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE-eecceeccCCcccchhhhhhcccCccceEEEEEeccccc
Confidence 00112477776 33444455555666664432 1121 110 0 112233333 23456
Q ss_pred CCCCccchhcccccccCC
Q psy9553 1038 DNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 1038 ~~asPAtvSRcgmvy~~~ 1055 (1282)
....||..|||..+++.|
T Consensus 335 ~~l~~aLrSR~~~i~~~p 352 (615)
T TIGR02903 335 EEINPALRSRCAEVFFEP 352 (615)
T ss_pred cccCHHHHhceeEEEeCC
Confidence 677899999999999987
No 159
>PRK07667 uridine kinase; Provisional
Probab=52.92 E-value=13 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHR 942 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~ 942 (1282)
+.||||||+.+.|++++...|.+..
T Consensus 25 ~~gsGKStla~~L~~~l~~~~~~~~ 49 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQEGIPFH 49 (193)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 6889999999999999987665443
No 160
>PRK13974 thymidylate kinase; Provisional
Probab=52.81 E-value=26 Score=38.00 Aligned_cols=21 Identities=29% Similarity=-0.024 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
+.||||||..+.|++.+..-|
T Consensus 11 ~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 11 IDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 568999999999999987544
No 161
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=52.81 E-value=4.3e+02 Score=30.74 Aligned_cols=88 Identities=13% Similarity=0.308 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHH
Q psy9553 214 GLMTEINSCNRRIAFLLRKKYHRE----------------MDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEV 277 (1282)
Q Consensus 214 ~L~~~~~~~~~~l~~~L~~~~~~~----------------~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~ 277 (1282)
..+..++.|......+|..+.+.+ ++.+...++++. .|.-....++.+.+++..+...+.+..
T Consensus 45 ~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~~~~~~~l~~l~~Ll~e~~-~L~~~~pEi~~L~~l~~~ve~f~~~a~ 123 (335)
T PF08429_consen 45 NFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQKSRNKLTLEELEALLEEIE-SLPFDCPEIDQLKELLEEVEEFQSRAQ 123 (335)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCccccccccccCCHHHHHHHHHHHh-cCCeeCchHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999888775443 444555554442 333333346666666666665555443
Q ss_pred H-HHH-hhHHHHHHHHhh---hhcCCCCCH
Q psy9553 278 D-MEL-KIEPIEEAYNVI---TRYDLPVDK 302 (1282)
Q Consensus 278 ~-le~-~i~~i~e~~~lL---~~~~~~l~~ 302 (1282)
. +.. .-..+.++..+| ..|++.+|+
T Consensus 124 ~~L~~~~~~~~~~le~Ll~~g~s~~v~lpe 153 (335)
T PF08429_consen 124 EALSDPESPSLEELEELLEEGESFGVDLPE 153 (335)
T ss_pred HHHhccccCCHHHHHHHHHhcccCceeChh
Confidence 3 221 122334444444 567888776
No 162
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=52.41 E-value=25 Score=42.32 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.-|+||||+--.|+.+|...|..+-+..++|-+ +...++|.
T Consensus 130 KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~ 170 (405)
T PRK13869 130 KGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGV 170 (405)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCC
Confidence 466999999999999999888776666677763 33345553
No 163
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=52.39 E-value=2e+02 Score=32.55 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=34.7
Q ss_pred hHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 275 QEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTA 325 (1282)
Q Consensus 275 ~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~ 325 (1282)
.-+.|+..+.+++.+-..|..|.+-+-+|.-..+..+...|..+...+...
T Consensus 151 lg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dR 201 (302)
T PF07139_consen 151 LGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDR 201 (302)
T ss_pred cCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677778888888888898987776665455556666666665555443
No 164
>PRK06526 transposase; Provisional
Probab=52.11 E-value=8.2 Score=43.08 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.3
Q ss_pred HHhcCCcEEEecCCCCC
Q psy9553 1266 IAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1266 ~~~~~~~~ll~G~~Gt~ 1282 (1282)
++..+.+++|+||||||
T Consensus 94 fi~~~~nlll~Gp~GtG 110 (254)
T PRK06526 94 FVTGKENVVFLGPPGTG 110 (254)
T ss_pred hhhcCceEEEEeCCCCc
Confidence 45788999999999999
No 165
>PRK13976 thymidylate kinase; Provisional
Probab=51.91 E-value=18 Score=39.19 Aligned_cols=19 Identities=32% Similarity=0.130 Sum_probs=17.2
Q ss_pred CCCChhHHHHHHHHHHHhc
Q psy9553 919 WLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~ 937 (1282)
-||||||..+.|++.|...
T Consensus 9 DGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 9 DGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999875
No 166
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.76 E-value=6.7e+02 Score=32.65 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 373 ASDRLILFQNRFDGMWRKLQTYQS 396 (1282)
Q Consensus 373 a~~~l~~~~~~l~~l~~~~~~l~~ 396 (1282)
..+.|.+..++++++.++.+.+++
T Consensus 690 I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 690 IKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556555555555543
No 167
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=51.71 E-value=8.6 Score=41.05 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=12.7
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||.+|+|..
T Consensus 36 pSGSGKSTlLRclN~ 50 (240)
T COG1126 36 PSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCCCHHHHHHHHHC
Confidence 899999998888653
No 168
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=51.55 E-value=1.1e+02 Score=35.78 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=88.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----C---------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----P---------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~---------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|.|.||+++...+++++-..+. + ..++.+.|-. . +..|--.-+|+
T Consensus 32 ~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--------------~--~~~I~idqiR~ 95 (334)
T PRK07993 32 LPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK--------------G--KSSLGVDAVRE 95 (334)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc--------------c--cccCCHHHHHH
Confidence 6889999999999999854211 0 1234454410 0 01122233444
Q ss_pred Hhc-----cCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccccccc
Q psy9553 979 TLK-----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYM 1053 (1282)
Q Consensus 979 ~~~-----~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~ 1053 (1282)
+.+ ...+.++-+|.|. .|..=.+.-|+.| |+|-=| |+++-||+=+++...--|.-+|||=.++|
T Consensus 96 l~~~~~~~~~~g~~kV~iI~~-ae~m~~~AaNaLL---KtLEEP-------p~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 96 VTEKLYEHARLGGAKVVWLPD-AALLTDAAANALL---KTLEEP-------PENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred HHHHHhhccccCCceEEEEcc-hHhhCHHHHHHHH---HHhcCC-------CCCeEEEEEECChhhChHHHHhccccccC
Confidence 432 1235578888886 5555555556665 444322 56777888888888888888999999999
Q ss_pred CCCCCCcHHHHHHHhccC---ChHHHHHHHHHHHhhhHHHHHHHh
Q psy9553 1054 SSSGLDWSPIVAAWLRGR---SAKEASVFHHLFEESFPVLYAWGA 1095 (1282)
Q Consensus 1054 ~~~~~~~~~~~~swl~~~---~~~~~~~l~~l~~~~~~~~l~~~~ 1095 (1282)
.+-. ...+..||... +......+-.+.+--...+++++.
T Consensus 165 ~~~~---~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 165 APPP---EQYALTWLSREVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred CCCC---HHHHHHHHHHccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 8643 56778899643 222233444444444455566553
No 169
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=51.34 E-value=37 Score=38.33 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
|.||||+.--|+.||.+.|..+-+...+|..=+..-|.|
T Consensus 11 GVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g 49 (273)
T PRK13232 11 GIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLG 49 (273)
T ss_pred CCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcC
Confidence 689999999999999999887766667777655554444
No 170
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=51.13 E-value=1e+02 Score=39.54 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9553 793 SVESWLTCLLQMAQQSLHSIIRTAYTSL 820 (1282)
Q Consensus 793 ~ve~WL~~le~~m~~tl~~~i~~~~~~~ 820 (1282)
+.|--+..++..++.|=...+++-+..|
T Consensus 368 ~feGvi~~~~rr~~et~S~~~r~~l~~y 395 (935)
T COG0178 368 PFEGVIPNLERRYLETESESIREELEKY 395 (935)
T ss_pred ceeeehhhHHHHHHhhccHHHHHHHHhh
Confidence 4455566777777776655555555554
No 171
>PRK07933 thymidylate kinase; Validated
Probab=50.99 E-value=32 Score=37.27 Aligned_cols=23 Identities=26% Similarity=0.027 Sum_probs=19.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
-||||||..+.|++.+..-|.++
T Consensus 9 dGsGKST~~~~L~~~L~~~g~~v 31 (213)
T PRK07933 9 DGAGKRTLTEALRAALEARGRSV 31 (213)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeE
Confidence 57999999999999998766543
No 172
>KOG0996|consensus
Probab=50.73 E-value=7.9e+02 Score=33.19 Aligned_cols=33 Identities=9% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHhccccCCCHHHHHHHHHHHHHHHHhHHHH
Q psy9553 247 EMDRKLDRTITDLDDVRMIMELLKRIRDQEVDM 279 (1282)
Q Consensus 247 ~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~l 279 (1282)
+.-..+.....+.+.+.+..+.+.+++.+..++
T Consensus 845 ~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 845 ELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566666666555555544444
No 173
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.62 E-value=21 Score=42.11 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC-CcccccceecCCCC----ccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI-TAAQMFGRLDVATN----DWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i-~~~~LyG~~d~~t~----eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|.|+||||.+..|+..+..-|..+-....+|--+ ..+||-.+-+...- .=++.-+...++.+... .....|+.
T Consensus 249 ptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~--~~~DvVLI 326 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE--ARVDYILI 326 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc--cCCCEEEE
Confidence 7999999999999998876555554555565432 23444332111000 00122233333333211 13468999
Q ss_pred cCCC----Chhhhhhhhhhcc
Q psy9553 993 DGPV----DSIWIENLNSVLD 1009 (1282)
Q Consensus 993 DG~v----d~~WiE~mnsvlD 1009 (1282)
|.+- |..=++.|..+++
T Consensus 327 DTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 327 DTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred eCccccCcCHHHHHHHHHHHh
Confidence 9854 3444555555543
No 174
>PRK05642 DNA replication initiation factor; Validated
Probab=50.03 E-value=54 Score=36.08 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=54.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC--
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP-- 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~-- 995 (1282)
|.|+|||.+.+.++.++..-|..+ ..+ +.+++... ...+++.+.. ...+|+|.=
T Consensus 53 ~~G~GKTHLl~a~~~~~~~~~~~v--~y~-----~~~~~~~~------------~~~~~~~~~~-----~d~LiiDDi~~ 108 (234)
T PRK05642 53 KDGVGRSHLLQAACLRFEQRGEPA--VYL-----PLAELLDR------------GPELLDNLEQ-----YELVCLDDLDV 108 (234)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcE--EEe-----eHHHHHhh------------hHHHHHhhhh-----CCEEEEechhh
Confidence 799999999888877654433322 222 23333221 1223332221 136888851
Q ss_pred --CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcc--cccc-cCC
Q psy9553 996 --VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRN--GMVY-MSS 1055 (1282)
Q Consensus 996 --vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRc--gmvy-~~~ 1055 (1282)
-++.|-|-+-.+++. .-.+|-+|-++.+. +...+...-|+-.||| |+|+ +.+
T Consensus 109 ~~~~~~~~~~Lf~l~n~----~~~~g~~ilits~~----~p~~l~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 109 IAGKADWEEALFHLFNR----LRDSGRRLLLAASK----SPRELPIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred hcCChHHHHHHHHHHHH----HHhcCCEEEEeCCC----CHHHcCccCccHHHHHhcCeeeecCC
Confidence 246777666555532 01112222222221 2246777789999999 5666 443
No 175
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.84 E-value=22 Score=43.66 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=72.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCCCcc---cccceecCCCCccccchH-HHHHHHHhcc--CCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAITAA---QMFGRLDVATNDWTDGIF-SALWRKTLKL--KPGDH 987 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i~~~---~LyG~~d~~t~eW~dG~~-~~~~r~~~~~--~~~~~ 987 (1282)
|.|+||||+.+.+++++...+. ++.. +.|...+..+ .+| .+|..+. -|+= -+-+++.+.. ..+.+
T Consensus 46 p~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d~~-eidaas~---~gvd~ir~I~~~~~~~P~~~~~ 120 (486)
T PRK14953 46 PRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPDLI-EIDAASN---RGIDDIRALRDAVSYTPIKGKY 120 (486)
T ss_pred CCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCcEE-EEeCccC---CCHHHHHHHHHHHHhCcccCCe
Confidence 6899999999999999864321 1111 1222222111 111 2343221 2221 0122222221 23456
Q ss_pred eEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHH
Q psy9553 988 VWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAW 1067 (1282)
Q Consensus 988 ~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~sw 1067 (1282)
+=+|+|. +|....+..|++|. . |-+ .|+++.+||=+.++...-|+--|||..|.+.+-. ..-+..|
T Consensus 121 KVvIIDE-ad~Lt~~a~naLLk---~--LEe-----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls---~~el~~~ 186 (486)
T PRK14953 121 KVYIIDE-AHMLTKEAFNALLK---T--LEE-----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPT---KEQIKEY 186 (486)
T ss_pred eEEEEEC-hhhcCHHHHHHHHH---H--Hhc-----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCC---HHHHHHH
Confidence 7788887 66666666666542 1 211 3667888887777776666668999998887532 2334455
Q ss_pred hcc
Q psy9553 1068 LRG 1070 (1282)
Q Consensus 1068 l~~ 1070 (1282)
+..
T Consensus 187 L~~ 189 (486)
T PRK14953 187 LKR 189 (486)
T ss_pred HHH
Confidence 544
No 176
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.84 E-value=20 Score=43.29 Aligned_cols=17 Identities=29% Similarity=0.032 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.+++.+
T Consensus 44 ppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 44 PPGTGKTTLARIIAGAT 60 (413)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999998754
No 177
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.56 E-value=18 Score=43.58 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCCCChhHHHHHHHHHHH-hc-CCCceeeeeccCCC-Ccccc--ccee-c-CCCCccccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALS-EV-EEPHREMRMNPKAI-TAAQM--FGRL-D-VATNDWTDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~-~~-~~~~~~~~inpk~i-~~~~L--yG~~-d-~~t~eW~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|+|+||||+.-.|+.++. .. |..+-++..+|--+ ..++| ||.. + |...--+.+=+...+++. ....+|
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-----~~~DlV 303 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-----RDCDVI 303 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-----CCCCEE
Confidence 799999999999998876 22 33444455566321 12233 2221 0 000001111123333332 236899
Q ss_pred EEcCC----CChhhhhhhhhhcc
Q psy9553 991 VLDGP----VDSIWIENLNSVLD 1009 (1282)
Q Consensus 991 vfDG~----vd~~WiE~mnsvlD 1009 (1282)
+.|.+ .|+.-++.|..+++
T Consensus 304 lIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 304 LIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHh
Confidence 99954 78888999998887
No 178
>PRK13768 GTPase; Provisional
Probab=49.54 E-value=16 Score=40.91 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=27.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.|+||||+...++.++...|.++.+..++|-+
T Consensus 10 ~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred CCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 578999999999999998888777777788853
No 179
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=49.45 E-value=3.8e+02 Score=30.17 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH-Hhhh-
Q psy9553 219 INSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTIT--DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAY-NVIT- 294 (1282)
Q Consensus 219 ~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~--~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~-~lL~- 294 (1282)
+......+...+.+.+...++.+...++++...+...+. .+.++..+ +.....+...+.+..+.. .++.
T Consensus 108 ~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l-------~~~l~~l~~~l~~~~~~l~~~~~~ 180 (292)
T PF01544_consen 108 PEDLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDL-------RRELSRLRRSLSPLREVLQRLLRR 180 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHh
Confidence 345556666777777777777777777777777744332 22333333 333444444555555555 5555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9553 295 RYDLPVDKEDLEQVDSLRYTWQKLLARA 322 (1282)
Q Consensus 295 ~~~~~l~~e~~~~~~~l~~~w~~l~~~~ 322 (1282)
.....++++....+..+......+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (292)
T PF01544_consen 181 DDSPFISDEDKEYLRDLLDRIERLLERA 208 (292)
T ss_dssp CCSTTSHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455554444444444444333333
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.32 E-value=4.7e+02 Score=30.19 Aligned_cols=79 Identities=10% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhH
Q psy9553 209 EQLKFGLMTEIN----SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIE 284 (1282)
Q Consensus 209 ~~lK~~L~~~~~----~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~ 284 (1282)
..+|..-+-.++ .|...+.+-|...+...++.+.+......+.+. .+-..+..+++....+..++.
T Consensus 120 ~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~----------~l~~~~~~l~~~~~~L~~e~~ 189 (312)
T smart00787 120 QLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELE----------LLNSIKPKLRDRKDALEEELR 189 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 477777777777666666666655544432222 222334455555566666666
Q ss_pred HHHHHHHhhhhcC
Q psy9553 285 PIEEAYNVITRYD 297 (1282)
Q Consensus 285 ~i~e~~~lL~~~~ 297 (1282)
.+++...-+..++
T Consensus 190 ~L~~~~~e~~~~d 202 (312)
T smart00787 190 QLKQLEDELEDCD 202 (312)
T ss_pred HHHHhHHHHHhCC
Confidence 6666666555443
No 181
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.10 E-value=3.1e+02 Score=30.47 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 315 WQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRT 360 (1282)
Q Consensus 315 w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~ 360 (1282)
-..++.++.+..+.+.+ =+.+|++|+..+...+++|-.
T Consensus 70 iRHLkakLkes~~~l~d--------RetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHD--------RETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554443 256677888888888888854
No 182
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=49.06 E-value=9.8 Score=41.62 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|+||||||++++++.-
T Consensus 37 pSGcGKSTLLriiAGL 52 (248)
T COG1116 37 PSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 8999999999988763
No 183
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=48.91 E-value=59 Score=38.41 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC----CceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE----PHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~----~~~~~~inpk~i 951 (1282)
|+|+|||++.+.+.+.+..... +.....+|....
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 8999999999999887754321 234455776444
No 184
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.73 E-value=10 Score=40.34 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||.+|+|.+-
T Consensus 41 PSGcGKST~LR~lNRm 56 (253)
T COG1117 41 PSGCGKSTLLRCLNRM 56 (253)
T ss_pred CCCcCHHHHHHHHHhh
Confidence 7999999988877653
No 185
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=48.10 E-value=41 Score=40.32 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~v 996 (1282)
|+|+|||++.++|++.+ +.+. ..++.-.++-....|. | ..++++..++...-+ ....+--|++|. +
T Consensus 124 P~GsGKT~lAraLA~~l---~~pf--~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~~~l~~a~~gIV~lDE-I 190 (413)
T TIGR00382 124 PTGSGKTLLAQTLARIL---NVPF--AIADATTLTEAGYVGE-D------VENILLKLLQAADYDVEKAQKGIIYIDE-I 190 (413)
T ss_pred CCCcCHHHHHHHHHHhc---CCCe--EEechhhccccccccc-c------HHHHHHHHHHhCcccHHhcccceEEecc-c
Confidence 89999999999999765 3332 3344433332222232 1 245677776643211 111234678887 4
Q ss_pred C
Q psy9553 997 D 997 (1282)
Q Consensus 997 d 997 (1282)
|
T Consensus 191 d 191 (413)
T TIGR00382 191 D 191 (413)
T ss_pred c
Confidence 4
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=47.99 E-value=49 Score=33.33 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|+|+|||+..+.++.....-+
T Consensus 7 ~~G~GKT~l~~~i~~~~~~~~ 27 (165)
T cd01120 7 PTGSGKTTLALQLALNIATKG 27 (165)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 678999999999988776533
No 187
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=47.97 E-value=11 Score=46.55 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||++++|++.|
T Consensus 53 P~G~GKtttv~~La~el 69 (519)
T PF03215_consen 53 PSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999976
No 188
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=47.84 E-value=16 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1258 RIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1258 r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
....++..++..+++++++||||||
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSG 174 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSG 174 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCcc
Confidence 4567888999999999999999999
No 189
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=47.71 E-value=6.1e+02 Score=31.06 Aligned_cols=187 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHH----HHHHHHHHHHhHHHHHHhhHHHHH
Q psy9553 213 FGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRM----IMELLKRIRDQEVDMELKIEPIEE 288 (1282)
Q Consensus 213 ~~L~~~~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e----~~~~i~~i~~~~~~le~~i~~i~e 288 (1282)
..|..+...-...+...=.+.+...+..|.+.++.+-..+.+...--..+.+ +..++..+++....+..++..+++
T Consensus 258 ~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~ 337 (570)
T COG4477 258 ERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKE 337 (570)
T ss_pred HHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHH
Q psy9553 289 AYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQ-------------PRFEQDLADNLAQFRQDKVDYC 355 (1282)
Q Consensus 289 ~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k-------------~~f~~~L~~~~~~f~~~i~~~~ 355 (1282)
.|. ++.++...+.........+.....++...++... .+-...++++..++.+.+.+++
T Consensus 338 sY~--------l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 338 SYR--------LAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred Hhc--------cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHH
Q psy9553 356 HEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQK 423 (1282)
Q Consensus 356 ~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~ 423 (1282)
++ -.+|-+.+..++.++.+.+ .+...+.+=|+|.+-..-+..+...++.+-.
T Consensus 410 kd------------El~Are~l~~~~~~l~eik----R~mek~nLPGlPe~~l~l~~~~~~~i~~l~~ 461 (570)
T COG4477 410 KD------------ELEARENLERLKSKLHEIK----RYMEKSNLPGLPETFLSLFFTAGHEIQDLMK 461 (570)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCcHHHHHHHHhhhhHHHHHHH
No 190
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=47.58 E-value=15 Score=41.75 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+||||+...|+..+
T Consensus 100 ~sgsGKStlA~~La~~l 116 (301)
T PRK04220 100 ASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999877
No 191
>PRK14529 adenylate kinase; Provisional
Probab=47.54 E-value=31 Score=37.65 Aligned_cols=83 Identities=20% Similarity=0.113 Sum_probs=44.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc-eeee--eccCCCCccc-c-----cceecCCCCccccchHHHHHHHHhccCCCCce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH-REMR--MNPKAITAAQ-M-----FGRLDVATNDWTDGIFSALWRKTLKLKPGDHV 988 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~-~~~~--inpk~i~~~~-L-----yG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~ 988 (1282)
|+||||||..+.|++.+....... .+.. +... -..++ + -|.+-| |=+...++++...... . +
T Consensus 8 ~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~-t~lg~~i~~~i~~G~lvp------dei~~~lv~~~l~~~~-~-~ 78 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGG-TELGKKAKEYIDRGDLVP------DDITIPMILETLKQDG-K-N 78 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCC-ChHHHHHHHHHhccCcch------HHHHHHHHHHHHhccC-C-C
Confidence 789999999999998874321110 0000 1100 01111 1 122222 2244555555554333 3 3
Q ss_pred EEEEcC-CCChhhhhhhhhhcc
Q psy9553 989 WLVLDG-PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 989 WivfDG-~vd~~WiE~mnsvlD 1009 (1282)
=+|+|| |=...=++.|...|.
T Consensus 79 g~iLDGfPRt~~Qa~~l~~~l~ 100 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKLWEALQ 100 (223)
T ss_pred cEEEeCCCCCHHHHHHHHHHHH
Confidence 378999 777777887776654
No 192
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=47.49 E-value=34 Score=35.71 Aligned_cols=37 Identities=22% Similarity=0.001 Sum_probs=23.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|+||||+.--|+.++ ..+-....||-.=+...++|.
T Consensus 9 gG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~ 45 (179)
T cd03110 9 GGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKP 45 (179)
T ss_pred CCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCC
Confidence 4699999999999999 233334455544444444443
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=47.43 E-value=18 Score=39.37 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.||||||+.+.|+..+..
T Consensus 7 ~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 7 SVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 6789999999999999865
No 194
>KOG0742|consensus
Probab=47.20 E-value=15 Score=42.65 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9553 176 ESEHALRRHGELEA 189 (1282)
Q Consensus 176 ~~~~~i~~y~~~~~ 189 (1282)
++....++|.....
T Consensus 111 E~~~k~~~~eA~qa 124 (630)
T KOG0742|consen 111 EQQAKTKEYEAAQA 124 (630)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 195
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=47.08 E-value=34 Score=38.42 Aligned_cols=31 Identities=32% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.||||+.--|+.+|...|.++-+..++|-+
T Consensus 11 GvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 11 GIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred cCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 6899999999999999888776666678764
No 196
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.37 E-value=20 Score=41.75 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1258 RIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1258 r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
...-++..++..++++++||+||||
T Consensus 148 ~~~~~L~~~v~~~~nili~G~tgSG 172 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTG 172 (332)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCC
Confidence 4556788889999999999999999
No 197
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=46.23 E-value=11 Score=43.52 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++|++|.=
T Consensus 37 PSGcGKSTlLr~IAGL 52 (338)
T COG3839 37 PSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 8999999999998864
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=46.23 E-value=55 Score=42.86 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC-CCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA-ITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~-i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|+|+|||++.+.+++++.. + .+.++=-. -...++-|.- +.|....-..+++.......... =|++|= +
T Consensus 357 ppG~GKTtl~~~ia~~l~~---~--~~~i~~~~~~d~~~i~g~~----~~~~g~~~G~~~~~l~~~~~~~~-villDE-i 425 (784)
T PRK10787 357 PPGVGKTSLGQSIAKATGR---K--YVRMALGGVRDEAEIRGHR----RTYIGSMPGKLIQKMAKVGVKNP-LFLLDE-I 425 (784)
T ss_pred CCCCCHHHHHHHHHHHhCC---C--EEEEEcCCCCCHHHhccch----hccCCCCCcHHHHHHHhcCCCCC-EEEEEC-h
Confidence 7999999999999988642 2 22232111 1123333332 22332222333333322111112 255553 2
Q ss_pred Chhh-------hhhhhhhccCCcccccc--CCC-eeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 997 DSIW-------IENLNSVLDDNRTLTLA--NGD-RLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 997 d~~W-------iE~mnsvlDdnk~L~L~--nge-ri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
|-.= ...|=.+||.+.-.+.. ..+ .+.+ +++-+|. +.+....+||-.+||.+|-+.+
T Consensus 426 dk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~-TaN~~~i~~aLl~R~~ii~~~~ 492 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVA-TSNSMNIPAPLLDRMEVIRLSG 492 (784)
T ss_pred hhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEE-cCCCCCCCHHHhcceeeeecCC
Confidence 2110 23444556653222221 111 1122 3444554 6666679999999999988764
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=46.03 E-value=1.3e+02 Score=35.21 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=52.8
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
+.++=+|+| +.|..=.+.-|++| |+|- -=|+++.+|+=+++...-=|.-+|||=.|.|.|-. ..-+
T Consensus 131 ~~~kV~iI~-~ae~m~~~AaNaLL---KtLE-------EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~---~~~~ 196 (342)
T PRK06964 131 GGARVVVLY-PAEALNVAAANALL---KTLE-------EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPA---PEAA 196 (342)
T ss_pred CCceEEEEe-chhhcCHHHHHHHH---HHhc-------CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCC---HHHH
Confidence 345666677 46666666666775 4442 24678899999999999989889999999998643 3567
Q ss_pred HHHhccC
Q psy9553 1065 AAWLRGR 1071 (1282)
Q Consensus 1065 ~swl~~~ 1071 (1282)
..||...
T Consensus 197 ~~~L~~~ 203 (342)
T PRK06964 197 AAWLAAQ 203 (342)
T ss_pred HHHHHHc
Confidence 7788654
No 200
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=45.93 E-value=2.7e+02 Score=28.56 Aligned_cols=140 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHh-cCCCCCCC---CHHHHHHHHHH
Q psy9553 308 VDSLRYTWQKLLARAMTANVLLTTMQPRFEQD----LADNLAQFRQDKVDYCHEYRT-SGPMMPGL---SPREASDRLIL 379 (1282)
Q Consensus 308 ~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~----L~~~~~~f~~~i~~~~~~~~~-~~p~~~~~---~~~ea~~~l~~ 379 (1282)
++.....|..-.....+..+.++..-.+-.+. +.+.+++|......+...+.. .+.....+ ......+.+.+
T Consensus 10 ~da~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE 89 (165)
T PF09602_consen 10 MDAFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINE 89 (165)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccccHHHHHHHHHH
Q psy9553 380 FQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPW--GEVNIEEINNELME 457 (1282)
Q Consensus 380 ~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~--~~ld~~~i~~~~~~ 457 (1282)
+..++.++..+...+- +.+.+..+++.......+++-...-+ ....-+.+...++.
T Consensus 90 ~t~k~~El~~~i~el~----------------------~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~ 147 (165)
T PF09602_consen 90 WTDKLNELSAKIQELL----------------------LSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDA 147 (165)
T ss_pred HHHHHHHHHHHHHHHH----------------------cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCccC
Q psy9553 458 FQNRCRKLPKGL 469 (1282)
Q Consensus 458 ~~~~~~~l~k~l 469 (1282)
|...++...+.+
T Consensus 148 yv~~~k~~q~~~ 159 (165)
T PF09602_consen 148 YVEQAKSSQKEL 159 (165)
T ss_pred HHHHHHHHHHHH
No 201
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=45.76 E-value=10 Score=37.03 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMF 957 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~Ly 957 (1282)
|+|+|||+++-.++..+...+...++.++-|......+++
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~ 47 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVA 47 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHH
Confidence 7899999998888877765544455666677666555544
No 202
>PRK13695 putative NTPase; Provisional
Probab=45.66 E-value=60 Score=33.77 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCceEEEEcC-----CCChhhhhhhhhhccCCccccc
Q psy9553 985 GDHVWLVLDG-----PVDSIWIENLNSVLDDNRTLTL 1016 (1282)
Q Consensus 985 ~~~~WivfDG-----~vd~~WiE~mnsvlDdnk~L~L 1016 (1282)
...+.+++|- ..|+.+.+.++.+++.++-+-+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~ 131 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIA 131 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEE
Confidence 3567899994 4577888999999876655544
No 203
>PRK11670 antiporter inner membrane protein; Provisional
Probab=45.63 E-value=47 Score=39.32 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=33.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.-|.||||+---|+.||.+.|..+-+...||-.=+...++|.
T Consensus 116 KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~ 157 (369)
T PRK11670 116 KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGA 157 (369)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCC
Confidence 456999999999999999988877666677776666666664
No 204
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=45.60 E-value=20 Score=37.75 Aligned_cols=23 Identities=22% Similarity=-0.047 Sum_probs=19.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
++||||||+.+.|++.+...|.+
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~ 29 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIG 29 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999765543
No 205
>KOG0744|consensus
Probab=45.47 E-value=8.6 Score=43.27 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHhcCCcEEEecCCCCC
Q psy9553 1266 IAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1266 ~~~~~~~~ll~G~~Gt~ 1282 (1282)
++..++=+|+.||||||
T Consensus 173 lIt~NRliLlhGPPGTG 189 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTG 189 (423)
T ss_pred eeeeeeEEEEeCCCCCC
Confidence 34567789999999999
No 206
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=45.25 E-value=34 Score=37.67 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=43.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccc--h----HHHHHHHHhccC-CCCceEEEE
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDG--I----FSALWRKTLKLK-PGDHVWLVL 992 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG--~----~~~~~r~~~~~~-~~~~~Wivf 992 (1282)
|+||||+.-.|+.++.+.|.++-+...+|-.- ....++.... ...|... + -...+++..... .++..+||+
T Consensus 12 GvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s-~~~w~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiI 89 (231)
T PRK13849 12 GAGKTTALMGLCAALASDGKRVALFEADENRP-LTRWKENALR-SNTWDPACEVYAADELPLLEAAYEDAELQGFDYALA 89 (231)
T ss_pred CccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHhhcc-ccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 69999999999999998887766666777432 1122222111 1123211 0 012334333222 245689999
Q ss_pred cCCCC
Q psy9553 993 DGPVD 997 (1282)
Q Consensus 993 DG~vd 997 (1282)
|.|--
T Consensus 90 D~pp~ 94 (231)
T PRK13849 90 DTHGG 94 (231)
T ss_pred eCCCC
Confidence 99763
No 207
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=44.98 E-value=20 Score=37.35 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|++.+.
T Consensus 10 ~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 10 GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 688999999999988753
No 208
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=44.96 E-value=11 Score=40.96 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=14.8
Q ss_pred CCcchhhHHHHHHHHhhc
Q psy9553 1183 ELPGRVKFDLFLREKLAT 1200 (1282)
Q Consensus 1183 ~~~~r~~f~~~~~~~~~~ 1200 (1282)
..+++..|+-|.|+.|.+
T Consensus 46 v~dn~~~F~~YArdQW~G 63 (368)
T COG1223 46 VDDNPEVFNIYARDQWLG 63 (368)
T ss_pred ecCCHHHHHHHHHHhhcc
Confidence 456899999999999863
No 209
>PRK06851 hypothetical protein; Provisional
Probab=44.74 E-value=22 Score=41.82 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeee--eccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMR--MNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~--inpk~i 951 (1282)
|+|+||||+.+.+++++..-|..+.+|+ ++|.++
T Consensus 222 ~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 222 RPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 7999999999999998887777766553 455443
No 210
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.73 E-value=1e+02 Score=37.37 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=46.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc-ccc--cc-eecC-CC--CccccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA-AQM--FG-RLDV-AT--NDWTDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~-~~L--yG-~~d~-~t--~eW~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|.|+||||+..-|+..+...|..+-+...++--... +|| |+ .++. .. ..-.| ...+++++...... ..-|
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d--~~~i~~~al~~~~~-~DvV 179 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKD--AVEIAKEGLEKFKK-ADVI 179 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccC--HHHHHHHHHHHhhc-CCEE
Confidence 789999999999999888766544444344321111 111 11 1110 00 11123 22344444332222 2569
Q ss_pred EEcCC----CChhhhhhhhhh
Q psy9553 991 VLDGP----VDSIWIENLNSV 1007 (1282)
Q Consensus 991 vfDG~----vd~~WiE~mnsv 1007 (1282)
|+|.+ .|..++|-|..+
T Consensus 180 IIDTAGr~~~d~~lm~El~~l 200 (437)
T PRK00771 180 IVDTAGRHALEEDLIEEMKEI 200 (437)
T ss_pred EEECCCcccchHHHHHHHHHH
Confidence 99985 677888777655
No 211
>PF13245 AAA_19: Part of AAA domain
Probab=44.70 E-value=27 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCCChh-HHHHHHHHHHHhcCC-CceeeeeccCCCCcccc
Q psy9553 918 QWLTRKT-TCIHTLMAALSEVEE-PHREMRMNPKAITAAQM 956 (1282)
Q Consensus 918 ~~~~GKt-~~~~~L~~a~~~~~~-~~~~~~inpk~i~~~~L 956 (1282)
|+||||| ++.+.++..+...+. ..++.++-|.--..++|
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l 58 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADEL 58 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHH
Confidence 7899999 555665555532111 33445555543333333
No 212
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=44.58 E-value=87 Score=35.42 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=40.2
Q ss_pred HHHHHhhhCC--CC-----C--CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC-CCcccccce
Q psy9553 905 QRDIFDILGP--EE-----V--QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA-ITAAQMFGR 959 (1282)
Q Consensus 905 ~rDiv~~lGP--en-----i--~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~-i~~~~LyG~ 959 (1282)
+++++..+=| -| | ++|+||||++..|-.-+..-|..+-+.-|+|-| .|.+.+.|.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 6677777733 11 1 789999999999999887777766677788855 466777663
No 213
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=44.44 E-value=37 Score=44.00 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCCC-----CCCCChhHHHHHHHHHHHhc----CCC-ceeeeeccCCCC-c--------ccccceecCCCCccccchHH
Q psy9553 913 GPEEV-----QWLTRKTTCIHTLMAALSEV----EEP-HREMRMNPKAIT-A--------AQMFGRLDVATNDWTDGIFS 973 (1282)
Q Consensus 913 GPeni-----~~~~GKt~~~~~L~~a~~~~----~~~-~~~~~inpk~i~-~--------~~LyG~~d~~t~eW~dG~~~ 973 (1282)
||.|+ |+|+|||++.+-+.+.|... +.+ ..++.||.-.++ . .+|.|.. |.++--...++.
T Consensus 779 gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLe 857 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILD 857 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHH
Confidence 56552 89999999998888777542 112 344557753322 1 2444543 433222344566
Q ss_pred HHHHHHhccCCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC---CCCccchhcccc
Q psy9553 974 ALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID---NASPATVSRNGM 1050 (1282)
Q Consensus 974 ~~~r~~~~~~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~---~asPAtvSRcgm 1050 (1282)
.+++.... ......-||+|- ||. |.+- ++.=++.|.+.-.. -...+-+|.-..++. .-.|+..||||.
T Consensus 858 rLF~~L~k-~~r~v~IIILDE-ID~-----L~kK-~QDVLYnLFR~~~~-s~SKLiLIGISNdlDLperLdPRLRSRLg~ 928 (1164)
T PTZ00112 858 RLFNQNKK-DNRNVSILIIDE-IDY-----LITK-TQKVLFTLFDWPTK-INSKLVLIAISNTMDLPERLIPRCRSRLAF 928 (1164)
T ss_pred HHHhhhhc-ccccceEEEeeh-Hhh-----hCcc-HHHHHHHHHHHhhc-cCCeEEEEEecCchhcchhhhhhhhhcccc
Confidence 66654422 122235788885 443 3221 11113333321110 011233444443322 225888899985
Q ss_pred --cccCC
Q psy9553 1051 --VYMSS 1055 (1282)
Q Consensus 1051 --vy~~~ 1055 (1282)
|.|.|
T Consensus 929 eeIvF~P 935 (1164)
T PTZ00112 929 GRLVFSP 935 (1164)
T ss_pred ccccCCC
Confidence 45543
No 214
>KOG0040|consensus
Probab=44.43 E-value=1.1e+03 Score=32.97 Aligned_cols=128 Identities=12% Similarity=0.204 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC--CCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRTI--TDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~p--~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
.+.+.++.+...+....+.+..++ +..++...+-+...........-+..+..+.+.-.-+..+++...+-..-.+..
T Consensus 2027 ~faKkaSafNwwfenaEE~l~~~~~~ns~~Ei~~l~~~h~~f~~sls~a~~df~~l~~ld~~iks~~v~~~pytw~t~e~ 2106 (2399)
T KOG0040|consen 2027 TFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALRDAHEDFQASLSSAQADFKQLAELDQQIKSFNVGSNPYTWFTMEA 2106 (2399)
T ss_pred HHHHHHHhhhHHHHhhHhcccccccccchHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhcCCCCCCceeehHHH
Confidence 345566677777777777777765 466777777777777777777777778888888888888987766655555778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQ------PRFEQDLADNLAQFRQDKVDYCHEYRT 360 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k------~~f~~~L~~~~~~f~~~i~~~~~~~~~ 360 (1282)
|...|..+...+.+....+.... +++.++.......|..=|.+.+..+..
T Consensus 2107 Le~tw~~L~~iI~eR~~el~~E~~Rq~~N~klc~efa~~a~tfh~wi~etr~el~~ 2162 (2399)
T KOG0040|consen 2107 LEETWRNLQQIISERERELDKEISRQEENDKLCEEFACTANTFHQWIVETRKELED 2162 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999888877666655322 345555555666666666666555443
No 215
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=44.20 E-value=26 Score=37.54 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
.|.||||+.-.|+.++...|..+-....||-.-+...+||
T Consensus 27 gG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~ 66 (204)
T TIGR01007 27 PGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFK 66 (204)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhC
Confidence 4699999999999999998877666667776544444554
No 216
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=44.19 E-value=19 Score=37.92 Aligned_cols=31 Identities=29% Similarity=0.147 Sum_probs=23.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
-||||||..+.|.++|...|.. ...+-.|.+
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~ 35 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGYK-VIITFPPGS 35 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTEE-EEEEESSTS
T ss_pred CCCCHHHHHHHHHHHHHHcCCc-ccccCCCCC
Confidence 4799999999999999987755 333334443
No 217
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.11 E-value=25 Score=36.48 Aligned_cols=23 Identities=17% Similarity=-0.073 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
..|+||||+...|.+.|...|..
T Consensus 31 LSGsGKSTiA~ale~~L~~~G~~ 53 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKGYH 53 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCe
Confidence 46799999999999999887754
No 218
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=43.83 E-value=56 Score=37.74 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCC------------Cc-eeeeeccCCCCcccccceecCCC---Cccccc-hHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE------------PH-REMRMNPKAITAAQMFGRLDVAT---NDWTDG-IFSALWRKTL 980 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~------------~~-~~~~inpk~i~~~~LyG~~d~~t---~eW~dG-~~~~~~r~~~ 980 (1282)
|.|.||++....+++++-.-+. .| ..+.+.|-....+++...-+... .+-.-+ |--.-+|++.
T Consensus 34 ~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~ 113 (314)
T PRK07399 34 PEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIK 113 (314)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHH
Confidence 6889999999999998853220 11 22445553222222110000000 001111 1112345443
Q ss_pred c----c-CCCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 981 K----L-KPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 981 ~----~-~~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
. . ..+.++-+|+|+ +|.||.- --|.+|-. +-=||+..+||=+++...--|+-.|||=.|.|.+
T Consensus 114 ~~l~~~p~~~~~kVvII~~------ae~m~~~-aaNaLLK~-----LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~ 181 (314)
T PRK07399 114 RFLSRPPLEAPRKVVVIED------AETMNEA-AANALLKT-----LEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYR 181 (314)
T ss_pred HHHccCcccCCceEEEEEc------hhhcCHH-HHHHHHHH-----HhCCCCCeEEEEECChHhCcHHHHhhceEEecCC
Confidence 2 1 235689999998 3666531 12333321 1225578899988898888899999999999986
Q ss_pred CCCCcHHHHHHHhccC
Q psy9553 1056 SGLDWSPIVAAWLRGR 1071 (1282)
Q Consensus 1056 ~~~~~~~~~~swl~~~ 1071 (1282)
-. ..-+..||.+.
T Consensus 182 l~---~~~~~~~L~~~ 194 (314)
T PRK07399 182 LS---DEQLEQVLKRL 194 (314)
T ss_pred CC---HHHHHHHHHHh
Confidence 32 24456777653
No 219
>PRK13949 shikimate kinase; Provisional
Probab=43.60 E-value=8.3 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.058 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+-+.|++.+.
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 688999999999999874
No 220
>PRK06526 transposase; Provisional
Probab=43.58 E-value=21 Score=39.93 Aligned_cols=77 Identities=21% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC---
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--- 994 (1282)
|+|+|||.+...|+.++..-|..+.. ++..+|...+-. .+.+|-+...+++.. ....+|+|.
T Consensus 106 p~GtGKThLa~al~~~a~~~g~~v~f-------~t~~~l~~~l~~---~~~~~~~~~~l~~l~-----~~dlLIIDD~g~ 170 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRACQAGHRVLF-------ATAAQWVARLAA---AHHAGRLQAELVKLG-----RYPLLIVDEVGY 170 (254)
T ss_pred CCCCchHHHHHHHHHHHHHCCCchhh-------hhHHHHHHHHHH---HHhcCcHHHHHHHhc-----cCCEEEEccccc
Confidence 89999999999888776655544322 344444433321 134555555555542 235899997
Q ss_pred -CCChhhhhhhhhhcc
Q psy9553 995 -PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 995 -~vd~~WiE~mnsvlD 1009 (1282)
+.++.+.+-+..+++
T Consensus 171 ~~~~~~~~~~L~~li~ 186 (254)
T PRK06526 171 IPFEPEAANLFFQLVS 186 (254)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 346667777777775
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=43.38 E-value=43 Score=43.51 Aligned_cols=31 Identities=19% Similarity=-0.002 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
++|+||||+++.+.+++...+....+....|
T Consensus 346 gpGTGKTt~l~~i~~~~~~~~~~~~v~l~Ap 376 (720)
T TIGR01448 346 GPGTGKTTITRAIIELAEELGGLLPVGLAAP 376 (720)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCceEEEEeC
Confidence 6899999999999999988763333333333
No 222
>KOG0250|consensus
Probab=43.31 E-value=9.7e+02 Score=32.13 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhccccCCcchhhHHHHHHHH
Q psy9553 1165 HLHRLYVFALVWGMGAFLELPGRVKFDLFLREK 1197 (1282)
Q Consensus 1165 ~~~~~f~fa~iW~~gg~l~~~~r~~f~~~~~~~ 1197 (1282)
+...+|+.|+ |....+ .-..-..||-|+-..
T Consensus 997 FsTv~lllsL-W~~me~-Pfr~LDEFDVFMD~v 1027 (1074)
T KOG0250|consen 997 FSTVCLLLSL-WEVMEC-PFRALDEFDVFMDMV 1027 (1074)
T ss_pred HHHHHHHHHH-hHhhcC-chhhhhHHHHHHHHH
Confidence 4455566663 765532 122224677777543
No 223
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=43.30 E-value=61 Score=40.50 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCCChhHHHHHHHHHHHhc-C----CCceeeeeccCCCC------cccccceec-CCCCc----cccchHH---HHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEV-E----EPHREMRMNPKAIT------AAQMFGRLD-VATND----WTDGIFS---ALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~-~----~~~~~~~inpk~i~------~~~LyG~~d-~~t~e----W~dG~~~---~~~r~ 978 (1282)
|.|+|||++.+.+.+...+. . .....+.+|.-+.. -+.|+|..+ |.... ...|... -.+.
T Consensus 94 e~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~- 172 (531)
T TIGR02902 94 PPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT- 172 (531)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh-
Confidence 89999999998887643322 1 11233456643211 235666532 21100 1111100 0111
Q ss_pred HhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCC------Ce----------eecCCCCeEEEecC-CCCC
Q psy9553 979 TLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANG------DR----------LSMALAVKIIFEPH-NIDN 1039 (1282)
Q Consensus 979 ~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ng------er----------i~l~~~~~~~FEv~-dL~~ 1039 (1282)
.....=+++|. ..++.-...|=.+|.|.+.. +.+| +. =.+|.++++|.=+. ++..
T Consensus 173 -----~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~ 246 (531)
T TIGR02902 173 -----RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF-LDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEE 246 (531)
T ss_pred -----ccCCcEEEEechhhCCHHHHHHHHHHHHhCeee-eccccccccCcccccchhhhcccCcccceEEEEEecCCccc
Confidence 11234578886 23344444444555665543 3221 11 12466677776543 6777
Q ss_pred CCccchhcccccccCCC
Q psy9553 1040 ASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 1040 asPAtvSRcgmvy~~~~ 1056 (1282)
..||-.|||-.|+|.|-
T Consensus 247 L~paLrsR~~~I~f~pL 263 (531)
T TIGR02902 247 IPPALRSRCVEIFFRPL 263 (531)
T ss_pred CChHHhhhhheeeCCCC
Confidence 88999999999998753
No 224
>PRK06696 uridine kinase; Validated
Probab=42.89 E-value=21 Score=38.93 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
+.||||||+.+.|+++|...|.+
T Consensus 30 ~sgsGKSTlA~~L~~~l~~~g~~ 52 (223)
T PRK06696 30 ITASGKTTFADELAEEIKKRGRP 52 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCe
Confidence 78999999999999999766543
No 225
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=42.82 E-value=2e+02 Score=33.00 Aligned_cols=154 Identities=12% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc----C--CCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL----K--PGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~----~--~~~~~Wiv 991 (1282)
+.|.||++..+.+++++-...... ++|..-+ .-|-.+|+.. +.+=-.-+|++... + .++++=+|
T Consensus 26 ~eg~gk~~~a~~~a~~l~c~~~~~----~~~~~~p--~n~~~~d~~g----~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 26 NYNEDIDEKILYFLNKFNNLQITN----LNEQELP--ANIILFDIFD----KDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCCCCHHHHHHHHHHHHcCcCCCC----CCCCCCC--cceEEeccCC----CcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 567999999999999984321100 1111100 0011122110 00111233444332 1 25788889
Q ss_pred EcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhccC
Q psy9553 992 LDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGR 1071 (1282)
Q Consensus 992 fDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~~~ 1071 (1282)
+|+ +|..-.+..|+.|. +|- ..|+++-+||=+.+....-|+-.|||=+|.+.|-. ..-+..||...
T Consensus 96 I~~-~e~m~~~a~NaLLK-----~LE-----EPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~---~~~l~~~l~~~ 161 (299)
T PRK07132 96 IKN-IEKTSNSLLNALLK-----TIE-----EPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD---QQKILAKLLSK 161 (299)
T ss_pred Eec-ccccCHHHHHHHHH-----Hhh-----CCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC---HHHHHHHHHHc
Confidence 998 34444444454542 221 26788899997777777777779999999998643 34567787653
Q ss_pred --ChHHHHHHHHHHHhhhHHHHHHHhh
Q psy9553 1072 --SAKEASVFHHLFEESFPVLYAWGAA 1096 (1282)
Q Consensus 1072 --~~~~~~~l~~l~~~~~~~~l~~~~~ 1096 (1282)
+......+..+.+. +..++.++..
T Consensus 162 ~~~~~~a~~~a~~~~~-~~~a~~~~~~ 187 (299)
T PRK07132 162 NKEKEYNWFYAYIFSN-FEQAEKYINK 187 (299)
T ss_pred CCChhHHHHHHHHcCC-HHHHHHHHhc
Confidence 23333344444443 6666766543
No 226
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=42.31 E-value=30 Score=35.05 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=24.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
+.|+||||..+.|+.++...|.+..+...+|
T Consensus 7 ~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 7 VPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 4689999999999999987776655555565
No 227
>KOG0250|consensus
Probab=41.95 E-value=1e+03 Score=31.97 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=30.2
Q ss_pred ChHHHHHHHHhhHHHHhh--hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9553 586 TTAETIGQLEDSLMVLGS--LLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWV 642 (1282)
Q Consensus 586 ~~~ei~~~l~d~~~~l~~--m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~ 642 (1282)
+.|+-+..|+.-+..++. .--.......+..+.+.+.++..++.-+.....-++.|.
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~ 716 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKR 716 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776666665 111111223344455555555555555555555555554
No 228
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=41.94 E-value=21 Score=38.62 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||..+.|++.+
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68999999999998765
No 229
>PRK04132 replication factor C small subunit; Provisional
Probab=41.91 E-value=78 Score=41.53 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCC---CCceEEE
Q psy9553 915 EEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKP---GDHVWLV 991 (1282)
Q Consensus 915 eni~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~---~~~~Wiv 991 (1282)
-|+|.+-||||+.++|++-+-.=+-...+.-||+-.-.. .| .+-.++.+++...+ ...+=||
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------------id-~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------------IN-VIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------------HH-HHHHHHHHHHhcCCcCCCCCEEEE
Confidence 367999999999999988652101122344466543210 01 23333333332221 1347788
Q ss_pred EcCCCChhhhhhhhhhccCCccccccCCCeee-cCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 992 LDGPVDSIWIENLNSVLDDNRTLTLANGDRLS-MALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 992 fDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~-l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+|- +|..=-+.-|.+| .+ +. -|++++||+=..+.....|+-.|||=++.|.+-
T Consensus 636 IDE-aD~Lt~~AQnALL------k~-----lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~l 689 (846)
T PRK04132 636 LDE-ADALTQDAQQALR------RT-----MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 689 (846)
T ss_pred EEC-cccCCHHHHHHHH------HH-----hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCC
Confidence 886 4444333333332 11 22 246899999999999999999999999999854
No 230
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=41.86 E-value=20 Score=41.49 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1260 DYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1260 ~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.-++..++..+++++++|+||||
T Consensus 134 ~~~L~~~v~~~~nilI~G~tGSG 156 (323)
T PRK13833 134 ASVIRSAIDSRLNIVISGGTGSG 156 (323)
T ss_pred HHHHHHHHHcCCeEEEECCCCCC
Confidence 34567788899999999999999
No 231
>KOG1533|consensus
Probab=41.76 E-value=21 Score=38.48 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
|+||||||-..-..+-++.+|.+..++-++|-
T Consensus 10 PPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 10 PPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred CCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 78999999988888888888988766666663
No 232
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=41.71 E-value=27 Score=43.55 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1245 DYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1245 ~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.|.+++--.....+....+..+...+.|||++|++|||
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtG 239 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTG 239 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCcc
Confidence 45555554444445556667778899999999999999
No 233
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=41.52 E-value=4.3e+02 Score=27.57 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhccccCC--CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHHHH
Q psy9553 241 VYAVMNEMDRKLDRTIT--DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVD-KEDLEQVDSLRYTWQK 317 (1282)
Q Consensus 241 l~~~~~~~~~~L~~~p~--~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~-~e~~~~~~~l~~~w~~ 317 (1282)
+...+.+....+...+. +++++.+.+..+..+.+.....+..+..+.+...-|.....+-. ......+..+...|..
T Consensus 118 l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 197 (213)
T cd00176 118 LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEE 197 (213)
T ss_pred HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 66667777666655432 57888888888888888888888888888888777776654433 3334556778888888
Q ss_pred HHHHHHHHHHHHh
Q psy9553 318 LLARAMTANVLLT 330 (1282)
Q Consensus 318 l~~~~~~~~~~l~ 330 (1282)
+...+......++
T Consensus 198 l~~~~~~~~~~L~ 210 (213)
T cd00176 198 LLELAEERQKKLE 210 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 8777766555443
No 234
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.40 E-value=8.4e+02 Score=30.83 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9553 262 VRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLA 341 (1282)
Q Consensus 262 l~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~ 341 (1282)
+..+...+..+.+.+..++..+..|.+...-|... ..+....+..+...+..+++.+...+...-.. ...|+
T Consensus 100 f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~----e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a----~~~le 171 (569)
T PRK04778 100 FRKAKHEINEIESLLDLIEEDIEQILEELQELLES----EEKNREEVEQLKDLYRELRKSLLANRFSFGPA----LDELE 171 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCccccch----HHHHH
Confidence 44455555566666666666666666555544421 12222334445555555544443332222221 22334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 342 DNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTY 394 (1282)
Q Consensus 342 ~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l 394 (1282)
+.++.+......|.. +. ..-++.+|.+.+..++..+..+....+.+
T Consensus 172 ~~l~~~e~~f~~f~~-l~------~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 172 KQLENLEEEFSQFVE-LT------ESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHH-Hh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444432 22 22356788888888888888887776665
No 235
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.38 E-value=6.7e+02 Score=29.92 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEM 248 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~ 248 (1282)
+.+..++..+...++.+
T Consensus 264 d~i~~rl~~L~~~~~~l 280 (388)
T PF04912_consen 264 DSIERRLKSLLSELEEL 280 (388)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555443
No 236
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=41.38 E-value=29 Score=38.35 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC-CCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK-AITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk-~i~~~~LyG~ 959 (1282)
|+|.||||.+..|...+..-|..+-+.-++|- ..|-+.|.|.
T Consensus 37 ~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 37 PPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp -TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred CCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 79999999999999999887777777889996 4666788884
No 237
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.11 E-value=1.2e+03 Score=32.56 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=28.9
Q ss_pred HhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhh
Q psy9553 250 RKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITR 295 (1282)
Q Consensus 250 ~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~ 295 (1282)
..|...-.+...+..+-..+..+.+.+..++..-..+.++...+..
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~ 806 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQE 806 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666666666665554
No 238
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.02 E-value=3.8e+02 Score=27.72 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q psy9553 341 ADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNL 420 (1282)
Q Consensus 341 ~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~ 420 (1282)
..++..+..++..+..++.... ...+..+....+..+..++..+..+.+.+...... ..-.+...+.+++..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~---~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~-----vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLS---SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP-----VSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHH
Confidence 3333444444444444433321 12245677788888888888888888888763322 334566677777766
Q ss_pred HHHHHHH
Q psy9553 421 LQKLYKL 427 (1282)
Q Consensus 421 ~~~lW~~ 427 (1282)
+.+.|.-
T Consensus 157 ~~k~w~k 163 (169)
T PF07106_consen 157 WRKEWKK 163 (169)
T ss_pred HHHHHHH
Confidence 6666653
No 239
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=40.87 E-value=20 Score=38.18 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.||||||+.+.|+..+...+.+
T Consensus 7 ~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp STTSSHHHHHHHHHHHHTTCTTT
T ss_pred CCCCCHHHHHHHHHHHhCccCcC
Confidence 67899999999999999876544
No 240
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.70 E-value=6.4e+02 Score=29.27 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEM 248 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~ 248 (1282)
.|...+.+-|...+.+....+.+.....
T Consensus 141 eWR~~ll~gl~~~L~~~~~~L~~D~~~L 168 (325)
T PF08317_consen 141 EWRMQLLEGLKEGLEENLELLQEDYAKL 168 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4776666666666666666655554444
No 241
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=40.44 E-value=18 Score=37.33 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|+..+.
T Consensus 3 ~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 689999999999988773
No 242
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=40.21 E-value=50 Score=35.31 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=39.5
Q ss_pred CCCCChhHHHHHHHHH--HHhcCCCceeeeecc-CCCC-cccccceecCCCCcccc--chHHHHHHHHhcc--CCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAA--LSEVEEPHREMRMNP-KAIT-AAQMFGRLDVATNDWTD--GIFSALWRKTLKL--KPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a--~~~~~~~~~~~~inp-k~i~-~~~LyG~~d~~t~eW~d--G~~~~~~r~~~~~--~~~~~~W 989 (1282)
|-|+||||.++++..+ +...|..... .+ -.+. .+++|-.++.. ....+ +-|+.=+|+...- ....+++
T Consensus 36 ~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~~~~~~~~~~~~~~lg~~-~~l~~~~s~fs~g~~~~~~i~~~~~~p~l 111 (200)
T cd03280 36 PNAGGKTVTLKTLGLLTLMAQSGLPIPA---AEGSSLPVFENIFADIGDE-QSIEQSLSTFSSHMKNIARILQHADPDSL 111 (200)
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCccc---cccccCcCccEEEEecCch-hhhhcCcchHHHHHHHHHHHHHhCCCCcE
Confidence 7889999999998832 2223322110 11 1122 35666555432 12222 3355555554321 1245789
Q ss_pred EEEcCCC
Q psy9553 990 LVLDGPV 996 (1282)
Q Consensus 990 ivfDG~v 996 (1282)
+++|=|.
T Consensus 112 lllDEp~ 118 (200)
T cd03280 112 VLLDELG 118 (200)
T ss_pred EEEcCCC
Confidence 9999876
No 243
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=40.14 E-value=27 Score=36.92 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i 951 (1282)
|.||||||..+.|++.+...|..+ ..+-.|.+-
T Consensus 8 ~~GsGKtT~~~~L~~~l~~~g~~v-~~~~~~~~~ 40 (200)
T cd01672 8 IDGAGKTTLIELLAERLEARGYEV-VLTREPGGT 40 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCCC
Confidence 568999999999999998655443 223355543
No 244
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=40.12 E-value=15 Score=39.72 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.4
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
-++||.||||+|
T Consensus 51 ~h~lf~GPPG~G 62 (233)
T PF05496_consen 51 DHMLFYGPPGLG 62 (233)
T ss_dssp -EEEEESSTTSS
T ss_pred ceEEEECCCccc
Confidence 489999999998
No 245
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.12 E-value=27 Score=43.38 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=27.0
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
|.+++=-.....+..-.+..+..++.|||++|++|||
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTG 254 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTG 254 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 3344433444455666677888899999999999999
No 246
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=39.78 E-value=27 Score=38.30 Aligned_cols=23 Identities=26% Similarity=-0.000 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.|+||||+.+.|+..+...+..
T Consensus 41 ~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 41 PPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCCHHHHHHHHHHHhhhccCC
Confidence 78999999999999999876544
No 247
>PF12846 AAA_10: AAA-like domain
Probab=39.77 E-value=26 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
++|+|||++.+.+...+-..| ..+++++||
T Consensus 9 ~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~ 38 (304)
T PF12846_consen 9 KTGSGKTTLLKNLLEQLIRRG--PRVVIFDPK 38 (304)
T ss_pred CCCCcHHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence 689999999998887776655 334445554
No 248
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=39.62 E-value=29 Score=41.33 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHH--HHhcCCcEEEecCCCCC
Q psy9553 1256 NVRIDYLVNC--IAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1256 t~r~~~l~~~--~~~~~~~~ll~G~~Gt~ 1282 (1282)
-.+...|..+ ++..+.++++.||+|||
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTG 221 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTG 221 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCC
Confidence 4577778776 89999999999999999
No 249
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=39.34 E-value=16 Score=41.59 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=12.1
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+.|++|.||||||
T Consensus 57 ~~~~vll~G~pGTG 70 (284)
T TIGR02880 57 PTLHMSFTGNPGTG 70 (284)
T ss_pred CCceEEEEcCCCCC
Confidence 35689999999999
No 250
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=39.19 E-value=18 Score=37.22 Aligned_cols=17 Identities=24% Similarity=0.053 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999999999886
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=39.10 E-value=72 Score=42.28 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC----CCcccccceecCCCCccc-cchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA----ITAAQMFGRLDVATNDWT-DGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~----i~~~~LyG~~d~~t~eW~-dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|++++-. .......+|-.. -+...|+|.- |...... .|.++..+|+. ...=|+|
T Consensus 547 p~GvGKt~lA~~LA~~l~~--~~~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~~~------p~~Vvll 617 (821)
T CHL00095 547 PTGVGKTELTKALASYFFG--SEDAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVRKK------PYTVVLF 617 (821)
T ss_pred CCCCcHHHHHHHHHHHhcC--CccceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHHhC------CCeEEEE
Confidence 7999999999999998742 222233333211 1223344431 1111122 25666666642 1245778
Q ss_pred cCCCChhhhhhhhhhcc--CCccccccCCCeeecCCCCeEEEecCCC
Q psy9553 993 DGPVDSIWIENLNSVLD--DNRTLTLANGDRLSMALAVKIIFEPHNI 1037 (1282)
Q Consensus 993 DG~vd~~WiE~mnsvlD--dnk~L~L~ngeri~l~~~~~~~FEv~dL 1037 (1282)
|. +|..=-+-.|..|. |.-.+|-+.|..+.+. ++-+|| ++++
T Consensus 618 De-ieka~~~v~~~Llq~le~g~~~d~~g~~v~~~-~~i~I~-Tsn~ 661 (821)
T CHL00095 618 DE-IEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK-NTLIIM-TSNL 661 (821)
T ss_pred CC-hhhCCHHHHHHHHHHhccCceecCCCcEEecC-ceEEEE-eCCc
Confidence 86 55555555565543 4456777889888886 444444 4444
No 252
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=39.09 E-value=30 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1258 RIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1258 r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+..--+..+..++.|||++|++|||
T Consensus 387 ~~~~~~~~~a~~~~pVLI~GE~GTG 411 (686)
T PRK15429 387 SVLKQVEMVAQSDSTVLILGETGTG 411 (686)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCcC
Confidence 3344456677899999999999999
No 253
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=39.04 E-value=18 Score=37.76 Aligned_cols=18 Identities=22% Similarity=0.025 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|+..+.
T Consensus 9 ~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 9 PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 789999999999988764
No 254
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=39.00 E-value=33 Score=39.43 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred CcccccchhHHHHHHHHHHHHh----cCCcEEEecCCCCC
Q psy9553 1247 SSILVPIADNVRIDYLVNCIAK----QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1247 ~~~~vpt~dt~r~~~l~~~~~~----~~~~~ll~G~~Gt~ 1282 (1282)
.+-+|--..-=+...++-.|++ .|+-+|++||||||
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTG 77 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTG 77 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCc
Confidence 3456766666667777778886 45899999999998
No 255
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.99 E-value=6e+02 Score=35.93 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9553 256 ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPR 335 (1282)
Q Consensus 256 p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~ 335 (1282)
+..++++.+.++.+..++..+..++..+..+.........|.-..-......+-.....+..+...+......++..+..
T Consensus 219 ~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1353)
T TIGR02680 219 DDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREE 298 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776666555555444444311111112222223334444444444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 336 FEQDLADNLAQFRQDKVDYCHEYRT 360 (1282)
Q Consensus 336 f~~~L~~~~~~f~~~i~~~~~~~~~ 360 (1282)
. ..++.+...+..+...+..+...
T Consensus 299 ~-~~~~~~~~~le~~~~~l~~~~~~ 322 (1353)
T TIGR02680 299 E-RELDARTEALEREADALRTRLEA 322 (1353)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33455555555555555555444
No 256
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.83 E-value=21 Score=42.66 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.7
Q ss_pred HHHHHhcCCcEEEecCCCCC
Q psy9553 1263 VNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1263 ~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+.--...||++|++||||||
T Consensus 191 leiAAAGgHnLl~~GpPGtG 210 (490)
T COG0606 191 LEIAAAGGHNLLLVGPPGTG 210 (490)
T ss_pred HHHHHhcCCcEEEecCCCCc
Confidence 33446799999999999999
No 257
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=38.76 E-value=27 Score=39.99 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
-++..++..+++++++|+||||
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSG 144 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSG 144 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCC
Confidence 4566667889999999999999
No 258
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=38.70 E-value=21 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.101 Sum_probs=17.5
Q ss_pred CCCChhHHHHHHHHHHHhcCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
++|||||..+-|++.+...+.
T Consensus 10 P~SGKTt~a~~L~~~~~~~~~ 30 (270)
T PF08433_consen 10 PCSGKTTRAKELKKYLEEKGK 30 (270)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-
T ss_pred CCCcHHHHHHHHHHHHHhcCC
Confidence 579999999999999988443
No 259
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=38.64 E-value=12 Score=41.49 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC------cccccceecCCCCccccchHHHHHHHHhc-cCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT------AAQMFGRLDVATNDWTDGIFSALWRKTLK-LKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~------~~~LyG~~d~~t~eW~dG~~~~~~r~~~~-~~~~~~~Wi 990 (1282)
|-||||||++|+|+.-+.-.+. . +.++-|++. .....|++- ....=..|+- .++++. ...+...|.
T Consensus 36 pNG~GKSTLLk~l~g~l~p~~G--~-V~l~g~~i~~~~~kelAk~ia~vp-Q~~~~~~~~t---V~d~V~~GR~p~~~~~ 108 (258)
T COG1120 36 PNGSGKSTLLKCLAGLLKPKSG--E-VLLDGKDIASLSPKELAKKLAYVP-QSPSAPFGLT---VYELVLLGRYPHLGLF 108 (258)
T ss_pred CCCCCHHHHHHHHhccCCCCCC--E-EEECCCchhhcCHHHHhhhEEEec-cCCCCCCCcE---EeehHhhcCCcccccc
Confidence 7899999998888886642211 1 112222222 123455552 2222222211 111111 111223444
Q ss_pred EEcCCCChh---h-hhhhh-hhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHH
Q psy9553 991 VLDGPVDSI---W-IENLN-SVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVA 1065 (1282)
Q Consensus 991 vfDG~vd~~---W-iE~mn-svlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~ 1065 (1282)
---+.-|-. | ++.++ ..|.|...-+|+.|||=+.- ..-|-+-++.++.+|+..
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~--------------iArALaQ~~~iLLLDEPT-------- 166 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVL--------------IARALAQETPILLLDEPT-------- 166 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHH--------------HHHHHhcCCCEEEeCCCc--------
Confidence 322222221 1 34444 34678888999999973321 223566677777777432
Q ss_pred HHhccCChHHHHHHHHHHHhhhHHHHHHHhh-ccccccccchHHHHHHHHH
Q psy9553 1066 AWLRGRSAKEASVFHHLFEESFPVLYAWGAA-NLSYVMKVLQVNYVQQMLI 1115 (1282)
Q Consensus 1066 swl~~~~~~~~~~l~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~v~~~~~ 1115 (1282)
++|.= ..+-.+.++.. ++.++ +..-++-.++.|++..+|.
T Consensus 167 s~LDi---~~Q~evl~ll~-------~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 167 SHLDI---AHQIEVLELLR-------DLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred cccCH---HHHHHHHHHHH-------HHHHhcCCEEEEEecCHHHHHHhCC
Confidence 22210 11112222221 22323 2334567788888887775
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.61 E-value=21 Score=41.68 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC--CceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE--PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~--~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~ 995 (1282)
|+||||||+.+.|++++..... ....|.+.=.. +.-.++|===|+++.-.|....+.-+-.. ..++|.
T Consensus 86 PPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~---------~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~-~~~~~~ 155 (361)
T smart00763 86 PVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG---------EESPMHEDPLHLFPDELREDLEDEYGIPR-RRLEGD 155 (361)
T ss_pred CCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC---------CCCCCccCCcccCCHHHHHHHHHHhCCCh-hhcCCC
Confidence 7999999999999999987532 22344331100 00012333335556666655543323222 257888
Q ss_pred CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLD 1059 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~ 1059 (1282)
.+|.=-.-| +.. -.|+.-+ |.|. ---|+--.|-|+.-++|++=+
T Consensus 156 l~p~c~~~l----~~e-----~~gd~~~--------~~V~---~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 156 LSPWCRKRL----DEE-----YGGDIEK--------FEVV---RVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCHHHHHHH----HHH-----hCCCcce--------EEEE---EecCCeecceEEEEECCCCCC
Confidence 887633322 111 1455433 2221 112344467788888877543
No 261
>CHL00181 cbbX CbbX; Provisional
Probab=38.38 E-value=17 Score=41.42 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=12.1
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+.|++|.||||||
T Consensus 58 ~~~~ill~G~pGtG 71 (287)
T CHL00181 58 PGLHMSFTGSPGTG 71 (287)
T ss_pred CCceEEEECCCCCC
Confidence 35689999999999
No 262
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=38.14 E-value=29 Score=43.13 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=26.7
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
|.+++--.....+..-.+..+...+.|||++|++|||
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTG 247 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTG 247 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcC
Confidence 3334433334445666677788899999999999999
No 263
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=38.10 E-value=18 Score=39.26 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=12.8
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||+++++..
T Consensus 39 pSGSGKSTLLniig~ 53 (226)
T COG1136 39 PSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCCCHHHHHHHHhc
Confidence 899999998888654
No 264
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.86 E-value=19 Score=37.85 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++++.-
T Consensus 39 pSGcGKTTLLnl~AGf 54 (259)
T COG4525 39 PSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCccHHHHHHHHhcC
Confidence 7999999999987753
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.77 E-value=51 Score=39.44 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=45.1
Q ss_pred CCCCChhHHHHHHHHHH-HhcCCCceeeeeccCCC-CcccccceecCCCCc-cccchHHHHHHHHhccCCCCceEEEEc-
Q psy9553 918 QWLTRKTTCIHTLMAAL-SEVEEPHREMRMNPKAI-TAAQMFGRLDVATND-WTDGIFSALWRKTLKLKPGDHVWLVLD- 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~-~~~~~~~~~~~inpk~i-~~~~LyG~~d~~t~e-W~dG~~~~~~r~~~~~~~~~~~WivfD- 993 (1282)
|.|+||||+..-|+.++ ...|..+-+...+|--. ...+|-.+-+..--. -.-.-+..+ ++... ......|++|
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l-~~~l~--~~~~D~VLIDT 307 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKF-KETLA--RDGSELILIDT 307 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHH-HHHHH--hCCCCEEEEeC
Confidence 79999999999998765 33454444444555222 122222111100000 000002222 22222 2345789999
Q ss_pred -C--CCChhhhhhhhhhcc
Q psy9553 994 -G--PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 994 -G--~vd~~WiE~mnsvlD 1009 (1282)
| |-|..=++.|...++
T Consensus 308 aGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 308 AGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred CCCCccCHHHHHHHHHHHH
Confidence 5 467777777776653
No 266
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=37.72 E-value=31 Score=43.20 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1255 DNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1255 dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
...+..-.+..+...+.|||++|++|||
T Consensus 204 ~~~~~~~~~~~~a~~~~pvli~Ge~GtG 231 (534)
T TIGR01817 204 AMRQVVDQARVVARSNSTVLLRGESGTG 231 (534)
T ss_pred HHHHHHHHHHHHhCcCCCEEEECCCCcc
Confidence 3344556667778899999999999999
No 267
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=37.72 E-value=31 Score=39.26 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=17.6
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|.||||||+.++|...+...
T Consensus 70 ~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 70 SVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 78999999999999888754
No 268
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=37.66 E-value=54 Score=38.07 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=36.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWT 968 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~ 968 (1282)
.-|.||||+--.|+.++.+.|..+-....||-.=+...++|.-+..+..|.
T Consensus 102 KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~ 152 (322)
T TIGR03815 102 RGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWP 152 (322)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHH
Confidence 456999999999999998877766666678876666666775332333444
No 269
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=37.65 E-value=56 Score=32.59 Aligned_cols=30 Identities=17% Similarity=0.007 Sum_probs=23.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
-|+|||++--.|+..+...|..+.....+|
T Consensus 9 gg~gkt~~~~~~a~~~~~~~~~~~~vd~D~ 38 (139)
T cd02038 9 GGVGKTNISANLALALAKLGKRVLLLDADL 38 (139)
T ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 479999999999999987666655555554
No 270
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=37.52 E-value=38 Score=40.99 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+..++--+.-..+....+..+..+..|||+.|+||||
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtG 176 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTG 176 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCc
Confidence 4566666666778888999999999999999999999
No 271
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=37.34 E-value=19 Score=35.85 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||..+.|++.+.
T Consensus 7 ~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 689999999988887653
No 272
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=37.32 E-value=1.1e+02 Score=36.35 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHH
Q psy9553 985 GDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIV 1064 (1282)
Q Consensus 985 ~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~ 1064 (1282)
+.++-+|+|. +|..=.+..|++| |+|.= -|+++.+|+=+++...--|+..|||=.|.|.|-. ..-+
T Consensus 140 ~~~kVviIDe-ad~m~~~aanaLL---K~LEe-------pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~---~~~i 205 (365)
T PRK07471 140 GGWRVVIVDT-ADEMNANAANALL---KVLEE-------PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA---PEDV 205 (365)
T ss_pred CCCEEEEEec-hHhcCHHHHHHHH---HHHhc-------CCCCeEEEEEECCchhchHHhhccceEEECCCCC---HHHH
Confidence 3467888997 5544456666766 33322 2346667776777766678889999999998643 3445
Q ss_pred HHHhccC
Q psy9553 1065 AAWLRGR 1071 (1282)
Q Consensus 1065 ~swl~~~ 1071 (1282)
..|+...
T Consensus 206 ~~~L~~~ 212 (365)
T PRK07471 206 IDALAAA 212 (365)
T ss_pred HHHHHHh
Confidence 6777653
No 273
>PLN02459 probable adenylate kinase
Probab=37.19 E-value=44 Score=37.29 Aligned_cols=85 Identities=24% Similarity=0.200 Sum_probs=44.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee----e--eeccCCCCcccccceecCCCCc-cccchHHHHHHHHhccCC-CCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE----M--RMNPKAITAAQMFGRLDVATND-WTDGIFSALWRKTLKLKP-GDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~----~--~inpk~i~~~~LyG~~d~~t~e-W~dG~~~~~~r~~~~~~~-~~~~W 989 (1282)
|+||||||.-+.|++.+.. .+.. . -++.++=.-.+.-.+++ .++ =-|-+...++++...... ...+=
T Consensus 37 ~PGsGK~T~a~~la~~~~~---~~is~gdllR~ei~~~t~lg~~i~~~~~--~G~lVPdeiv~~ll~~~l~~~~~~~~~g 111 (261)
T PLN02459 37 CPGVGKGTYASRLSKLLGV---PHIATGDLVREEIKSSGPLGAQLKEIVN--QGKLVPDEIIFSLLSKRLEAGEEEGESG 111 (261)
T ss_pred CCCCCHHHHHHHHHHHhCC---cEEeCcHHHHHHHhccchhHHHHHHHHH--cCCccCHHHHHHHHHHHHhcccccCCce
Confidence 7999999999999886632 1110 0 02222111111222222 122 234466666666554321 22334
Q ss_pred EEEcC-CCChhhhhhhhhh
Q psy9553 990 LVLDG-PVDSIWIENLNSV 1007 (1282)
Q Consensus 990 ivfDG-~vd~~WiE~mnsv 1007 (1282)
+|+|| |-...=++.|.+.
T Consensus 112 ~iLDGFPRt~~Qa~~Le~~ 130 (261)
T PLN02459 112 FILDGFPRTVRQAEILEGV 130 (261)
T ss_pred EEEeCCCCCHHHHHHHHhc
Confidence 78999 7777777776543
No 274
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=37.07 E-value=7e+02 Score=28.65 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcC-C
Q psy9553 220 NSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYD-L 298 (1282)
Q Consensus 220 ~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~-~ 298 (1282)
......+...+.+.+...++.+...++++...+...+.+ ..+..+-.++.....+...+.+..+....|.+.. .
T Consensus 133 ~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~-----~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~ 207 (318)
T TIGR00383 133 DYLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTS-----TLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHL 207 (318)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 345666777777777888888888888887777665432 2223334455555566666666667766665543 2
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHH
Q psy9553 299 P-VDKEDLEQVDSLRYTWQKLLA 320 (1282)
Q Consensus 299 ~-l~~e~~~~~~~l~~~w~~l~~ 320 (1282)
. ++++....+..+......+..
T Consensus 208 ~~~~~~~~~~~~dv~~~~~~l~~ 230 (318)
T TIGR00383 208 PIQTEEVREYLRDIYDHILSLLE 230 (318)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 2 334433333333333333333
No 275
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=36.80 E-value=5.8e+02 Score=27.63 Aligned_cols=80 Identities=9% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh-------HHHHHHhhHHHH
Q psy9553 215 LMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQ-------EVDMELKIEPIE 287 (1282)
Q Consensus 215 L~~~~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~-------~~~le~~i~~i~ 287 (1282)
+..........+...+.+.+-.-+..+++.|.++.+.+.+.-.-+-|+-.....+..+.++ +...+.+++..+
T Consensus 73 v~e~~d~~~~~l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak 152 (211)
T cd07588 73 IFEQLDLLWNDLEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAK 152 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHH
Confidence 4445555566677777888888888888888888888877665555555555555555433 233445555555
Q ss_pred HHHHhhh
Q psy9553 288 EAYNVIT 294 (1282)
Q Consensus 288 e~~~lL~ 294 (1282)
+.|+-|.
T Consensus 153 ~~Ye~lN 159 (211)
T cd07588 153 KVYEELN 159 (211)
T ss_pred HHHHHHH
Confidence 5555443
No 276
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.75 E-value=19 Score=40.70 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=0.0
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+.++||+||||||
T Consensus 96 ~KSNILLiGPTGsG 109 (408)
T COG1219 96 SKSNILLIGPTGSG 109 (408)
T ss_pred eeccEEEECCCCCc
No 277
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=36.60 E-value=32 Score=39.76 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+++.|..++.
T Consensus 152 ~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 152 GTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 799999999999998874
No 278
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=36.59 E-value=22 Score=41.49 Aligned_cols=120 Identities=21% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC-CCCcccccceecCCC-------CccccchHHHHHHHHhccCCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK-AITAAQMFGRLDVAT-------NDWTDGIFSALWRKTLKLKPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk-~i~~~~LyG~~d~~t-------~eW~dG~~~~~~r~~~~~~~~~~~W 989 (1282)
|+|+|||++.+.+++++. ...+.|+.. -++-.+++|..+... .+|.+|-+..-.+ .-
T Consensus 51 ~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----------~i 115 (329)
T COG0714 51 PPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----------VI 115 (329)
T ss_pred CCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----------eE
Confidence 799999999999999886 233344443 344477777776543 4688887655433 23
Q ss_pred EEEcCCCChhhhhhhh---hhccCCccccccCCCe-eecCCCCeEEEecCC-----CCC-CCccchhcc-cccccCCC
Q psy9553 990 LVLDGPVDSIWIENLN---SVLDDNRTLTLANGDR-LSMALAVKIIFEPHN-----IDN-ASPATVSRN-GMVYMSSS 1056 (1282)
Q Consensus 990 ivfDG~vd~~WiE~mn---svlDdnk~L~L~nger-i~l~~~~~~~FEv~d-----L~~-asPAtvSRc-gmvy~~~~ 1056 (1282)
+.+|= |+-.=.+.+| .+|++-. .|+ .|.+ +++++...++- ++| -.+ -..|.--|| =-+|++.-
T Consensus 116 ll~DE-Inra~p~~q~aLl~~l~e~~-vtv-~~~~~~~~~~~f~via-T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 116 LLLDE-INRAPPEVQNALLEALEERQ-VTV-PGLTTIRLPPPFIVIA-TQNPGEYEGTYPLPEALLDRFLLRIYVDYP 189 (329)
T ss_pred EEEec-cccCCHHHHHHHHHHHhCcE-EEE-CCcCCcCCCCCCEEEE-ccCccccCCCcCCCHHHHhhEEEEEecCCC
Confidence 44443 3333344444 5555533 333 2444 77776654443 333 222 244888998 55666643
No 279
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=36.49 E-value=19 Score=37.98 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=47.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch-HHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI-FSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~-~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|.|+||||+.+.|+..+. + .+.++-+.++...--+ -.+|. ++ ....+|.+... .-...| .+||..
T Consensus 10 ~sGsGKsTl~~~l~~~~~----~--~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~g~~ 75 (186)
T PRK10078 10 PSGSGKDSLLAALRQREQ----T--QLLVAHRYITRPASAG-----SENHI-ALSEQEFFTRAGQN-LFALSW-HANGLY 75 (186)
T ss_pred CCCCCHHHHHHHHhccCC----C--eEEEcCEECCCccchh-----HHhhe-eEcHHHHHHHHHCC-chhhHH-HHhCCc
Confidence 789999999999966532 1 1223333333211000 00111 12 23344443322 112357 788888
Q ss_pred ChhhhhhhhhhccCCccccccCCCeee
Q psy9553 997 DSIWIENLNSVLDDNRTLTLANGDRLS 1023 (1282)
Q Consensus 997 d~~WiE~mnsvlDdnk~L~L~ngeri~ 1023 (1282)
--.|.+ +...|..++. ++.+|-+..
T Consensus 76 yg~~~~-~~~~l~~g~~-VI~~G~~~~ 100 (186)
T PRK10078 76 YGVGIE-IDLWLHAGFD-VLVNGSRAH 100 (186)
T ss_pred cCCcHH-HHHHHhCCCE-EEEeChHHH
Confidence 888874 8888877765 445666543
No 280
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=36.23 E-value=24 Score=39.75 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1256 NVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1256 t~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+.....++...+..+..++++|+||||
T Consensus 113 ~~~~~~~l~~~v~~~~~ili~G~tGSG 139 (270)
T PF00437_consen 113 PEEIAEFLRSAVRGRGNILISGPTGSG 139 (270)
T ss_dssp HHHHHHHHHHCHHTTEEEEEEESTTSS
T ss_pred HHHHHHHHhhccccceEEEEECCCccc
Confidence 355566677777889999999999999
No 281
>PRK06851 hypothetical protein; Provisional
Probab=36.18 E-value=34 Score=40.25 Aligned_cols=26 Identities=15% Similarity=-0.107 Sum_probs=21.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE 943 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~ 943 (1282)
++|+||||+.+.+..++...|..+..
T Consensus 38 ~pGtGKStl~~~i~~~~~~~g~~Ve~ 63 (367)
T PRK06851 38 GPGTGKSTLMKKIGEEFLEKGYDVEF 63 (367)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 78999999999999999876655443
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=36.17 E-value=23 Score=37.76 Aligned_cols=17 Identities=24% Similarity=0.170 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|...+
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68899999999999887
No 283
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=35.88 E-value=77 Score=35.53 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee------eeeccCCCC--------cccccceecCCCCccccchHHHHHHHHhccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE------MRMNPKAIT--------AAQMFGRLDVATNDWTDGIFSALWRKTLKLK 983 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~------~~inpk~i~--------~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~ 983 (1282)
++||||||+.+.|.+.+...|..+.+ |..+-.... .+.=|-.|+|...+|. +|...++...+..
T Consensus 7 ~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~d--lL~~~l~~L~~g~ 84 (277)
T cd02029 7 SSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFD--LLEELFRTYGETG 84 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHH--HHHHHHHHHHcCC
Confidence 47899999999999999876643221 221111111 1111334557777775 6777777776554
Q ss_pred CCC
Q psy9553 984 PGD 986 (1282)
Q Consensus 984 ~~~ 986 (1282)
..+
T Consensus 85 ~i~ 87 (277)
T cd02029 85 RGR 87 (277)
T ss_pred Ccc
Confidence 443
No 284
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=35.73 E-value=24 Score=37.85 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.|.
T Consensus 12 PagsGKsTvak~lA~~Lg 29 (222)
T COG0283 12 PAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCccChHHHHHHHHHHhC
Confidence 899999999999999874
No 285
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=35.67 E-value=65 Score=40.82 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=73.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCC----CC--ccccchHHHHHHHHhccCCCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVA----TN--DWTDGIFSALWRKTLKLKPGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~----t~--eW~dG~~~~~~r~~~~~~~~~~~Wiv 991 (1282)
+.|+|||++.+.|.+.+.. ......+++ .+|.+.|+|.+|.. ++ .|..|++.. + +.-=++
T Consensus 24 ~~GtgKs~lar~l~~~~~~---~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~----A------~~GvL~ 89 (589)
T TIGR02031 24 RAGTGKTALARALAEILPP---IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDE----A------PRGVLY 89 (589)
T ss_pred CCCcHHHHHHHHHHHhCCc---CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeee----C------CCCcEe
Confidence 6789999998888876532 112334554 68889999998732 22 345555432 0 011234
Q ss_pred EcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC----CCCccchhcccc
Q psy9553 992 LDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID----NASPATVSRNGM 1050 (1282)
Q Consensus 992 fDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~----~asPAtvSRcgm 1050 (1282)
+|- ..++.=...|-.+|+++..-.-..|....+|..+++|- +.+-. .-.|+-..|.++
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~np~e~~g~L~~~LldRf~l 153 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYDPAEGGGGLPDHLLDRLAL 153 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecCCccccCCCCHHHHHhccC
Confidence 443 23444455555677776654445577888888888885 55443 466789999988
No 286
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=35.63 E-value=36 Score=39.13 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.|+||||....|..++...|..+.+..++|-+
T Consensus 42 ~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 42 TPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 789999999999999988777666566666644
No 287
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=35.62 E-value=57 Score=38.88 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|...+...+
T Consensus 220 ~qGSGKSTLa~~L~~lL~~~g 240 (460)
T PLN03046 220 PQGCGKTTLVFALDYLFRVTG 240 (460)
T ss_pred CCCCCHHHHHHHHHHHhcccC
Confidence 789999999999988775543
No 288
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=35.60 E-value=32 Score=39.63 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1259 IDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1259 ~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
...+++..+..+..++++||+|+|
T Consensus 133 ~~~~l~~~v~~~~~ili~G~tGsG 156 (308)
T TIGR02788 133 IKEFLRLAIASRKNIIISGGTGSG 156 (308)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCC
Confidence 456788889999999999999998
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=35.57 E-value=20 Score=40.11 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.7
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+..+.+++|+||+|||
T Consensus 99 i~~~~~v~l~Gp~GtG 114 (259)
T PRK09183 99 IERNENIVLLGPSGVG 114 (259)
T ss_pred hhcCCeEEEEeCCCCC
Confidence 6678999999999999
No 290
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=35.51 E-value=36 Score=37.18 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
.+|||||+..++|...+.+ .....+.+++|.
T Consensus 31 ~TGsGKS~~~~~ll~~l~~-~~~~~~ii~D~~ 61 (229)
T PF01935_consen 31 TTGSGKSNTVKVLLEELLK-KKGAKVIIFDPH 61 (229)
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCCEEEEcCC
Confidence 5889999999999998873 223345556663
No 291
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=34.95 E-value=37 Score=40.16 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=34.6
Q ss_pred ccCCChHHHHHHHHHHhc-cccceEecccccceEEEEecCCCCeEecccccccccCHHHHHHHH
Q psy9553 739 GQASDSHTIQNHLLSIFD-NTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCL 801 (1282)
Q Consensus 739 s~~~~p~~vq~hl~k~F~-~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~v~~~g~ve~WL~~l 801 (1282)
+-+-+|..++..|..|.+ +++.+.+..+. .+ ++-..|+.+++..+..-...++..+..+
T Consensus 4 ~~~~~~~~~~~ll~~~~~~~~SDI~l~~g~--~v--~ir~~G~l~~~~~~~l~~~~~~~~i~~i 63 (372)
T TIGR02525 4 GPGLTADTLRRFFVHCSRHEVSDIHLQGGS--PI--VVERHGRQVPASSFPLDNLELERLVDEV 63 (372)
T ss_pred CCCCCHHHHHHHHHHHhhCCCceEEEcCCC--Ce--EEEECCeEEECCCCCCCHHHHHHHHHHH
Confidence 345678888888887775 78888886432 23 2345577776653222222455555544
No 292
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=34.89 E-value=19 Score=41.77 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.5
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
--.|+.+||+||||||
T Consensus 47 K~aGr~iLiaGppGtG 62 (398)
T PF06068_consen 47 KIAGRAILIAGPPGTG 62 (398)
T ss_dssp --TT-EEEEEE-TTSS
T ss_pred cccCcEEEEeCCCCCC
Confidence 3479999999999999
No 293
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=34.82 E-value=23 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+.+.+...+.-+++|||||||
T Consensus 125 ~~~~~~~~~~glilI~GpTGSG 146 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSG 146 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCC
Confidence 3566666678899999999999
No 294
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.78 E-value=7.8e+02 Score=28.56 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy9553 138 TLDIKPALVSFVEK 151 (1282)
Q Consensus 138 i~~~~~~~~~yl~~ 151 (1282)
...+..++..|+..
T Consensus 73 y~~~c~EL~~~I~e 86 (325)
T PF08317_consen 73 YQFSCRELKKYISE 86 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555543
No 295
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=34.55 E-value=70 Score=37.28 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CC-----c------------ee------eeeccCCCCcccccceecCC----CC-
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EP-----H------------RE------MRMNPKAITAAQMFGRLDVA----TN- 965 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~-----~------------~~------~~inpk~i~~~~LyG~~d~~----t~- 965 (1282)
|.|+||||+.+.|++.|..+. .+ . .. ++==|=.+|.+.|+|.+|.. ++
T Consensus 37 ~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~ 116 (334)
T PRK13407 37 DRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGE 116 (334)
T ss_pred CCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCC
Confidence 789999999999999984221 00 0 00 01134567778899987754 23
Q ss_pred -ccccchHHHHHHHHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCC-C-CC
Q psy9553 966 -DWTDGIFSALWRKTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI-D-NA 1040 (1282)
Q Consensus 966 -eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL-~-~a 1040 (1282)
.+.-|.+.. . ++-=+++|. ..++.=...|-.+|+++....-..|...++|..+.++.- .+. . ..
T Consensus 117 ~~~~~G~l~~-------A---~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt-~NP~e~~l 185 (334)
T PRK13407 117 KAFEPGLLAR-------A---NRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGS-GNPEEGEL 185 (334)
T ss_pred eeecCCceEE-------c---CCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEec-CCcccCCC
Confidence 355555421 0 112356665 233444444455666666544456767777776655543 332 2 35
Q ss_pred Cccchhccccc
Q psy9553 1041 SPATVSRNGMV 1051 (1282)
Q Consensus 1041 sPAtvSRcgmv 1051 (1282)
.|+-..|+++.
T Consensus 186 ~~aLldRF~~~ 196 (334)
T PRK13407 186 RPQLLDRFGLS 196 (334)
T ss_pred CHHHHhhcceE
Confidence 67888888863
No 296
>KOG0738|consensus
Probab=34.40 E-value=20 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.0
Q ss_pred HHHHHhcCCcEEEecCCCCC
Q psy9553 1263 VNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1263 ~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+.+..-=+-||++||||||
T Consensus 238 F~GirrPWkgvLm~GPPGTG 257 (491)
T KOG0738|consen 238 FKGIRRPWKGVLMVGPPGTG 257 (491)
T ss_pred HhhcccccceeeeeCCCCCc
Confidence 34444455789999999999
No 297
>PRK10867 signal recognition particle protein; Provisional
Probab=34.31 E-value=2.1e+02 Score=34.72 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=48.3
Q ss_pred CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCC-cccc--cceec---CCCCccccchHHHHHHHHhcc-CCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAIT-AAQM--FGRLD---VATNDWTDGIFSALWRKTLKL-KPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~-~~~L--yG~~d---~~t~eW~dG~~~~~~r~~~~~-~~~~~~W 989 (1282)
|.|+||||+.--|+..+... |..+-+...++--.. .+|| ||.-. ..+.. ...=...+.+++... .......
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~Dv 186 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG-DGQDPVDIAKAALEEAKENGYDV 186 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC-CCCCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999888776 655544444442221 1233 11110 00000 001123444444322 1233568
Q ss_pred EEEcCCC----Chhhhhhhhhhcc
Q psy9553 990 LVLDGPV----DSIWIENLNSVLD 1009 (1282)
Q Consensus 990 ivfDG~v----d~~WiE~mnsvlD 1009 (1282)
||+|.+- |...++-|-.+.+
T Consensus 187 VIIDTaGrl~~d~~lm~eL~~i~~ 210 (433)
T PRK10867 187 VIVDTAGRLHIDEELMDELKAIKA 210 (433)
T ss_pred EEEeCCCCcccCHHHHHHHHHHHH
Confidence 9999754 7788877765543
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.28 E-value=69 Score=39.46 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCceeeeeccCCCC-cccc--cceec-C-CCCccccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE--EPHREMRMNPKAIT-AAQM--FGRLD-V-ATNDWTDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~--~~~~~~~inpk~i~-~~~L--yG~~d-~-~t~eW~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|.|+||||+...|+..+..-+ ..+.+...++--+. .++| ||..- . ......++-+...+++. ....+|
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-----~~~DLV 432 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-----RDYKLV 432 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-----ccCCEE
Confidence 789999999999988765432 33334445554432 2333 22211 1 11113334455555543 236799
Q ss_pred EEcCC----CChhhhhhhh
Q psy9553 991 VLDGP----VDSIWIENLN 1005 (1282)
Q Consensus 991 vfDG~----vd~~WiE~mn 1005 (1282)
+.|.+ -|..-++.|.
T Consensus 433 LIDTaG~s~~D~~l~eeL~ 451 (559)
T PRK12727 433 LIDTAGMGQRDRALAAQLN 451 (559)
T ss_pred EecCCCcchhhHHHHHHHH
Confidence 99986 3555565543
No 299
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=34.22 E-value=30 Score=40.01 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.++...+..+++++++|+||||
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSG 160 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSG 160 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCC
Confidence 4567788899999999999999
No 300
>PTZ00301 uridine kinase; Provisional
Probab=33.98 E-value=42 Score=36.32 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|+||||||+.+.|.+.+..
T Consensus 11 ~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CCcCCHHHHHHHHHHHHHh
Confidence 6889999999988887754
No 301
>KOG4302|consensus
Probab=33.71 E-value=1.1e+03 Score=30.05 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcccE-EEE--EEec-CCCeEEE-cCCChHHHHHHHHhhHHHHhhhhcCCCchhH
Q psy9553 539 DIEDICISAMKEKDIEAKLRQVTNEWSVHE-LTF--MTFN-NRGELLL-RGDTTAETIGQLEDSLMVLGSLLSNRYNAPF 613 (1282)
Q Consensus 539 ~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~-f~~--~~~k-~~~~~~l-~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f 613 (1282)
.|......+..|+.+.+.+-+-.+.|.... .+- ..|. +..-|.- +|+ .++-.=++-.-.+.+. -...+.+.
T Consensus 358 ~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~~Rg~---h~lLkreekar~~vsK-lP~~~~~L 433 (660)
T KOG4302|consen 358 NIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNAGRGA---HLLLKREEKARKLVSK-LPKMVEAL 433 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhccccc---hhHHHHHHHHHHHhhh-CchhhHHH
Confidence 366688889999999999988889998652 211 1232 2222222 332 3333334444455555 44556788
Q ss_pred HHHHHHHHHHHhH
Q psy9553 614 RKQIQQWVFDLSN 626 (1282)
Q Consensus 614 ~~~v~~we~~L~~ 626 (1282)
...+..||..-..
T Consensus 434 ~~k~~~wE~e~~~ 446 (660)
T KOG4302|consen 434 TAKVTAWEEEKGR 446 (660)
T ss_pred HHHHHHHHHhcCC
Confidence 8999999876543
No 302
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=33.53 E-value=30 Score=40.72 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=12.5
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
++-+.||||||+|
T Consensus 203 ~~vi~LVGPTGVG 215 (407)
T COG1419 203 KRVIALVGPTGVG 215 (407)
T ss_pred CcEEEEECCCCCc
Confidence 8999999999999
No 303
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=33.52 E-value=29 Score=28.12 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhccccCCc
Q psy9553 1165 HLHRLYVFALVWGMGAFLELP 1185 (1282)
Q Consensus 1165 ~~~~~f~fa~iW~~gg~l~~~ 1185 (1282)
.+..+.++|+.|||||.|.+.
T Consensus 6 Lf~aiLalsla~s~gavCees 26 (59)
T PF03823_consen 6 LFAAILALSLARSFGAVCEES 26 (59)
T ss_pred HHHHHHHHHHHHHhhhhhhhh
Confidence 456788999999999988653
No 304
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=33.40 E-value=37 Score=45.14 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC--ceeeeeccCCCCcccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP--HREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~--~~~~~inpk~i~~~~LyG 958 (1282)
.+|||||++++++.-++-....| ++.+.||||..++..+=|
T Consensus 538 ~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~~~L~~~~~ 580 (858)
T COG1674 538 ATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELAAYDG 580 (858)
T ss_pred CCCCcHHHHHHHHHHHHHHhCChhHeEEEEEcCCCCeeeeccC
Confidence 68899999999887776554444 578899999999866544
No 305
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.34 E-value=40 Score=45.53 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC--CceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE--PHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~--~~~~~~inpk~i~ 952 (1282)
.+|||||+++++|..++-.... ..+.+.|+||.+.
T Consensus 1018 aTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~vE 1054 (1355)
T PRK10263 1018 TTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLE 1054 (1355)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCccc
Confidence 6889999999999887654333 4678899999753
No 306
>KOG0060|consensus
Probab=33.30 E-value=22 Score=43.35 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.9
Q ss_pred HHHhcCCcEEEecCCCCC
Q psy9553 1265 CIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1265 ~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.-+..|+++|+|||+|||
T Consensus 456 ~~V~~g~~LLItG~sG~G 473 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCG 473 (659)
T ss_pred eEecCCCeEEEECCCCCc
Confidence 346799999999999998
No 307
>KOG0734|consensus
Probab=33.25 E-value=22 Score=42.76 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=11.0
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
+-||||||||||
T Consensus 338 KGVLLvGPPGTG 349 (752)
T KOG0734|consen 338 KGVLLVGPPGTG 349 (752)
T ss_pred CceEEeCCCCCc
Confidence 579999999998
No 308
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=33.21 E-value=29 Score=35.42 Aligned_cols=18 Identities=28% Similarity=0.082 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+-+.|++-+.
T Consensus 8 ~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 8 LPGSGKTTVARELAEHLG 25 (179)
T ss_pred CCCCChhHHHHHHHHHhC
Confidence 789999999999998653
No 309
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=33.03 E-value=40 Score=36.78 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|+||||..-.|+.++..-|..+.+..-+|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDp 40 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADP 40 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 69999999999999988887655543333
No 310
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=33.02 E-value=32 Score=33.51 Aligned_cols=19 Identities=32% Similarity=0.167 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|+|+|||++++.+++.+..
T Consensus 12 ~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhHH
Confidence 7899999999999998764
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.01 E-value=26 Score=35.95 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=12.7
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||..|.++.
T Consensus 37 PSG~GKStllk~va~ 51 (223)
T COG4619 37 PSGCGKSTLLKIVAS 51 (223)
T ss_pred CCCccHHHHHHHHHh
Confidence 899999998777765
No 312
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=32.97 E-value=41 Score=38.93 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|...+.
T Consensus 156 ~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 156 GTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 799999999999998764
No 313
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.95 E-value=1.1e+03 Score=29.61 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9553 377 LILFQNRFDGMWRKLQTYQ 395 (1282)
Q Consensus 377 l~~~~~~l~~l~~~~~~l~ 395 (1282)
+..++.+++.+......+.
T Consensus 308 i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 308 LKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 314
>PRK03839 putative kinase; Provisional
Probab=32.92 E-value=28 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.051 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
++||||||+-+.|++++.
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999999999873
No 315
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=32.86 E-value=1e+02 Score=40.96 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC----CCCcccccceecCCCCcc-ccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK----AITAAQMFGRLDVATNDW-TDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk----~i~~~~LyG~~d~~t~eW-~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|++++..-+. ....+|-. ..+...|+|.- |..... ..|.++..+|+. + ..=|+|
T Consensus 603 p~GvGKt~lA~~La~~l~~~~~--~~i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v~~~----p--~~vlll 673 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLFDDED--AMVRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAVRRK----P--YSVVLF 673 (852)
T ss_pred CCCCCHHHHHHHHHHHhcCCCC--cEEEEechhhcccchHHHhcCCC-CCccCcccccHHHHHHHcC----C--CcEEEE
Confidence 7999999999999998753222 23333322 12334455532 111111 136677766641 1 235889
Q ss_pred cCCCChhhhhhhh---hhccCCccccccCCCeeecCCCCeEEEecCCC
Q psy9553 993 DGPVDSIWIENLN---SVLDDNRTLTLANGDRLSMALAVKIIFEPHNI 1037 (1282)
Q Consensus 993 DG~vd~~WiE~mn---svlDdnk~L~L~ngeri~l~~~~~~~FEv~dL 1037 (1282)
|. ||..=-+-.| .+||+++ ++-..|..+.+.+ +-+|+ ++|+
T Consensus 674 De-ieka~~~v~~~Ll~~l~~g~-l~d~~g~~vd~rn-~iiI~-TSn~ 717 (852)
T TIGR03346 674 DE-VEKAHPDVFNVLLQVLDDGR-LTDGQGRTVDFRN-TVIIM-TSNL 717 (852)
T ss_pred ec-cccCCHHHHHHHHHHHhcCc-eecCCCeEEecCC-cEEEE-eCCc
Confidence 97 4444333344 4555554 5677787887764 33443 4443
No 316
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=32.72 E-value=29 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|+..+.
T Consensus 14 ~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 688999999999988764
No 317
>PRK13764 ATPase; Provisional
Probab=32.70 E-value=29 Score=43.57 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=23.3
Q ss_pred ccchhHHHHH-HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1251 VPIADNVRID-YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1251 vpt~dt~r~~-~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.||.|..... .+++.+...+..+|++||||||
T Consensus 237 ~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSG 269 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLEERAEGILIAGAPGAG 269 (602)
T ss_pred CCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCC
Confidence 3444444332 4677778888999999999999
No 318
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.70 E-value=2.2e+02 Score=34.51 Aligned_cols=90 Identities=16% Similarity=0.048 Sum_probs=45.9
Q ss_pred CCCCChhHHHHHHHHHHH-hcCCCceeeeeccCCCC-cccc--cceec--CCCCccccchHHHHHHHHhcc-CCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALS-EVEEPHREMRMNPKAIT-AAQM--FGRLD--VATNDWTDGIFSALWRKTLKL-KPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~-~~~~~~~~~~inpk~i~-~~~L--yG~~d--~~t~eW~dG~~~~~~r~~~~~-~~~~~~Wi 990 (1282)
|.|+||||+.--|+.++. +.|..+-+...++--.. ..|| ||.-. |.-......-...+.+++... .......|
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvV 186 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVV 186 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 889999999999998875 45555544444432221 1222 22100 000000000012333333322 12334689
Q ss_pred EEcCCC----Chhhhhhhhhh
Q psy9553 991 VLDGPV----DSIWIENLNSV 1007 (1282)
Q Consensus 991 vfDG~v----d~~WiE~mnsv 1007 (1282)
|+|.+- |+..++-|-.+
T Consensus 187 IIDTaGr~~~d~~l~~eL~~i 207 (428)
T TIGR00959 187 IVDTAGRLQIDEELMEELAAI 207 (428)
T ss_pred EEeCCCccccCHHHHHHHHHH
Confidence 999865 88888877555
No 319
>PRK06547 hypothetical protein; Provisional
Probab=32.66 E-value=29 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.065 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++++
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999999874
No 320
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=32.55 E-value=32 Score=39.55 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=34.9
Q ss_pred CCCCChhHHHHHHHHHHHhc--CC-Cceee---eeccCCCCccc-------ccceecCCCCccccchHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV--EE-PHREM---RMNPKAITAAQ-------MFGRLDVATNDWTDGIFSALWRKTLK 981 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~--~~-~~~~~---~inpk~i~~~~-------LyG~~d~~t~eW~dG~~~~~~r~~~~ 981 (1282)
|+|||||++...|++.+... .. ..++| .|=.-..+.+| |+|..+|. ..++-|-|-...+++..
T Consensus 12 ptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~-~~~s~~~f~~~a~~~i~ 87 (307)
T PRK00091 12 PTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPT-ESYSVADFQRDALAAIA 87 (307)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChh-hcccHHHHHHHHHHHHH
Confidence 89999999999998876320 00 01111 12122233334 66777664 36776666555555443
No 321
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=32.54 E-value=44 Score=42.93 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
|.+++--.....+..-.+......+.|||+.|++|||
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtG 360 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVG 360 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcC
Confidence 4455444444556667778888999999999999999
No 322
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=32.49 E-value=49 Score=35.84 Aligned_cols=45 Identities=27% Similarity=0.277 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVAT 964 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t 964 (1282)
|=||||+-.-+++||..+|+.+-.+=-+||+=|.--|+|-.-..|
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipT 55 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPT 55 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccch
Confidence 359999999999999999887766668999999999999543334
No 323
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=32.45 E-value=79 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=25.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~ 952 (1282)
|+|+|||++.+.+++.+...+....+..+|....+
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 89999999999999887665434455567765543
No 324
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=32.31 E-value=26 Score=33.31 Aligned_cols=14 Identities=21% Similarity=-0.012 Sum_probs=12.5
Q ss_pred CCCCChhHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLM 931 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~ 931 (1282)
|.||||||+.+++.
T Consensus 23 pSGsGKSTLl~~l~ 36 (107)
T cd00820 23 DSGIGKTELALELI 36 (107)
T ss_pred CCCCCHHHHHHHhh
Confidence 78999999999876
No 325
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.31 E-value=7.5e+02 Score=31.10 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=12.1
Q ss_pred HhhHHHHHHHHhhhhcCCCCCH
Q psy9553 281 LKIEPIEEAYNVITRYDLPVDK 302 (1282)
Q Consensus 281 ~~i~~i~e~~~lL~~~~~~l~~ 302 (1282)
..+..+++.++-|..-++.-|.
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~ 212 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPL 212 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHH
Confidence 4455566666666655554443
No 326
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.25 E-value=7.5e+02 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=12.2
Q ss_pred HHhHHHHHHhhHHHHHHHHhhhhc
Q psy9553 273 RDQEVDMELKIEPIEEAYNVITRY 296 (1282)
Q Consensus 273 ~~~~~~le~~i~~i~e~~~lL~~~ 296 (1282)
..+...++.++....+-.++|..|
T Consensus 87 q~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 87 QQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554
No 327
>KOG0744|consensus
Probab=32.20 E-value=26 Score=39.66 Aligned_cols=18 Identities=33% Similarity=0.124 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+|+|||++.|.|++-|+
T Consensus 185 PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred CCCCChhHHHHHHHHhhe
Confidence 899999999999998775
No 328
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=32.08 E-value=32 Score=36.82 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=18.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i 951 (1282)
|.|||||++++.+...+. .....+|||-.+
T Consensus 23 ~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~ 52 (199)
T PF06414_consen 23 QPGSGKSTLARQLLEEFG----GGGIVVIDADEF 52 (199)
T ss_dssp -TTSTTHHHHHHHHHHT-----TT-SEEE-GGGG
T ss_pred CCCCCHHHHHHHhhhhcc----CCCeEEEehHHH
Confidence 678999999998887764 223445666443
No 329
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=32.08 E-value=7.1 Score=49.59 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC---Ccc---cccceecCCCCccccchHHHHHHHHhccC-----CCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI---TAA---QMFGRLDVATNDWTDGIFSALWRKTLKLK-----PGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i---~~~---~LyG~~d~~t~eW~dG~~~~~~r~~~~~~-----~~~ 986 (1282)
|.||||||+.+.|++-+.--. .. ..+|-+.+ +.. ...|++..+. .+|+.-+|+...-. .++
T Consensus 377 ~sGsGKSTLl~ll~gl~~p~~--G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~-----~lf~~Ti~~Ni~~~~~~~~~~~ 448 (582)
T PRK11176 377 RSGSGKSTIANLLTRFYDIDE--GE-ILLDGHDLRDYTLASLRNQVALVSQNV-----HLFNDTIANNIAYARTEQYSRE 448 (582)
T ss_pred CCCCCHHHHHHHHHhccCCCC--ce-EEECCEEhhhcCHHHHHhhceEEccCc-----eeecchHHHHHhcCCCCCCCHH
Confidence 889999999888877543211 12 23444333 222 3345554432 24444445433211 111
Q ss_pred ceEEEEcCCCChhhhhhh----hhhccCCccccccCCCeee
Q psy9553 987 HVWLVLDGPVDSIWIENL----NSVLDDNRTLTLANGDRLS 1023 (1282)
Q Consensus 987 ~~WivfDG~vd~~WiE~m----nsvlDdnk~L~L~ngeri~ 1023 (1282)
.-|-+++---=..|+++| +|.++++. -.|+.|||=+
T Consensus 449 ~i~~al~~~~l~~~i~~lp~Gldt~ig~~g-~~LSGGqrQR 488 (582)
T PRK11176 449 QIEEAARMAYAMDFINKMDNGLDTVIGENG-VLLSGGQRQR 488 (582)
T ss_pred HHHHHHHHhCcHHHHHhcccccCceeCCCC-CcCCHHHHHH
Confidence 222222211113367775 77776654 3588888533
No 330
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=32.05 E-value=48 Score=35.90 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+|||+++-.+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 68999998776666665
No 331
>PRK05480 uridine/cytidine kinase; Provisional
Probab=31.84 E-value=30 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68899999999999987
No 332
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=31.69 E-value=24 Score=41.24 Aligned_cols=129 Identities=20% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCCChhHHHHHHHHHHHhcC----CCceeee------------------------------eccCCCCcccccceecCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE----EPHREMR------------------------------MNPKAITAAQMFGRLDVA 963 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~----~~~~~~~------------------------------inpk~i~~~~LyG~~d~~ 963 (1282)
|.|+|||++.+.+.+-+.... .+...+- ==|=.+|-+.|+|.+|..
T Consensus 46 ~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~ 125 (350)
T CHL00081 46 DRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIE 125 (350)
T ss_pred CCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHH
Confidence 799999999999988876532 1111000 013356778899999864
Q ss_pred CCccccchHHHHHHHHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC--C
Q psy9553 964 TNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID--N 1039 (1282)
Q Consensus 964 t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~--~ 1039 (1282)
. .++.|.. .++.-.- ..-++-=++.|. ..++.=-..|--+|++...=.-..|...++|..+-++-. .+.. .
T Consensus 126 ~-al~~g~~--~~~~GlL-~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT-~np~eg~ 200 (350)
T CHL00081 126 K-ALTEGVK--AFEPGLL-AKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGS-GNPEEGE 200 (350)
T ss_pred H-HhhcCcc--cccCCee-eecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEec-cCcccCC
Confidence 3 4555531 1010000 001122455554 122222222223444422111123555566666555552 2222 2
Q ss_pred CCccchhccccc
Q psy9553 1040 ASPATVSRNGMV 1051 (1282)
Q Consensus 1040 asPAtvSRcgmv 1051 (1282)
-.|+-.-|.+|.
T Consensus 201 l~~~LldRf~l~ 212 (350)
T CHL00081 201 LRPQLLDRFGMH 212 (350)
T ss_pred CCHHHHHHhCce
Confidence 567788888853
No 333
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=31.67 E-value=31 Score=34.38 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
++||||||+.+.|++.+
T Consensus 7 ~~GsGKst~a~~la~~~ 23 (147)
T cd02020 7 PAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999876
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.64 E-value=42 Score=38.17 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHHhc-C-CCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV-E-EPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~-~-~~~~~~~inp 948 (1282)
|+|+||||+...|+..+..- | ..+.++..+|
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 89999999999999888654 4 4555555665
No 335
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=31.60 E-value=45 Score=40.63 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=34.2
Q ss_pred CCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1245 DYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1245 ~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.|.+|+=-...-.|..-+.+.......+||+.|+||||
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTG 280 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTG 280 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCcc
Confidence 47788888888888899999999999999999999999
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=31.47 E-value=39 Score=43.67 Aligned_cols=17 Identities=18% Similarity=-0.095 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+||||+.+.+++.+
T Consensus 60 PpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 60 PPGVGKTTLARIIANHT 76 (725)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999998765
No 337
>PRK12377 putative replication protein; Provisional
Probab=31.02 E-value=37 Score=37.74 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHhcCCcEEEecCCCCC
Q psy9553 1263 VNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1263 ~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+.+.....+++|.||||||
T Consensus 94 a~~~~~~~~~l~l~G~~GtG 113 (248)
T PRK12377 94 ADELMTGCTNFVFSGKPGTG 113 (248)
T ss_pred HHHHHhcCCeEEEECCCCCC
Confidence 33444556789999999999
No 338
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=30.87 E-value=48 Score=40.72 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+.+++-.+....+....+..+...+.||+++|++|||
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtG 173 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTG 173 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 3445666666667777778888999999999999999
No 339
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=30.86 E-value=77 Score=40.57 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCCCChhHHHHHHHHHHHhc--------C---------------------CCceeeeeccCCCCcccccceecCC----C
Q psy9553 918 QWLTRKTTCIHTLMAALSEV--------E---------------------EPHREMRMNPKAITAAQMFGRLDVA----T 964 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~--------~---------------------~~~~~~~inpk~i~~~~LyG~~d~~----t 964 (1282)
|.|+|||++.+.|.+.+-.+ + ....-++.-|=.+|-+.|+|..|.. +
T Consensus 33 ~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~ 112 (633)
T TIGR02442 33 EKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALRE 112 (633)
T ss_pred CCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhc
Confidence 68999999999998887211 0 0011223335567888999998742 1
Q ss_pred Cc--cccchHHHHHHHHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC--
Q psy9553 965 ND--WTDGIFSALWRKTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-- 1038 (1282)
Q Consensus 965 ~e--W~dG~~~~~~r~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-- 1038 (1282)
++ .+-|++.. ..+-=+++|. ..++.=.+.|-.+|+++..-.-..|....++..+.+|. +.|..
T Consensus 113 g~~~~~~G~L~~----------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa-t~np~eg 181 (633)
T TIGR02442 113 GEKAFQPGLLAE----------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG-TMNPEEG 181 (633)
T ss_pred CCeeecCcceee----------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE-ecCCCCC
Confidence 22 23343321 0112355554 13333344444566776654445677778888888887 55543
Q ss_pred CCCccchhcccccc
Q psy9553 1039 NASPATVSRNGMVY 1052 (1282)
Q Consensus 1039 ~asPAtvSRcgmvy 1052 (1282)
.-+|+...|++|..
T Consensus 182 ~l~~~L~dR~~l~i 195 (633)
T TIGR02442 182 DLRPQLLDRFGLCV 195 (633)
T ss_pred CCCHHHHhhcceEE
Confidence 35689999999743
No 340
>KOG1970|consensus
Probab=30.84 E-value=29 Score=42.10 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i 951 (1282)
|+||||||++++|++-+ |-..+.+ +||=..
T Consensus 118 PsGcGKSTtvkvLskel---g~~~~Ew-~Npi~~ 147 (634)
T KOG1970|consen 118 PSGCGKSTTVKVLSKEL---GYQLIEW-SNPINL 147 (634)
T ss_pred CCCCCchhHHHHHHHhh---Cceeeee-cCCccc
Confidence 79999999999999865 3333333 566443
No 341
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=30.83 E-value=30 Score=34.54 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+||||+.+.|++.+
T Consensus 7 psGsGKstl~~~L~~~~ 23 (137)
T cd00071 7 PSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 78999999999988754
No 342
>PRK06835 DNA replication protein DnaC; Validated
Probab=30.75 E-value=39 Score=39.30 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=16.9
Q ss_pred HHHHHHhcCCcEEEecCCCCC
Q psy9553 1262 LVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1262 l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+++.+-..+.+++|+||||||
T Consensus 175 f~~~f~~~~~~Lll~G~~GtG 195 (329)
T PRK06835 175 FIENFDKNNENLLFYGNTGTG 195 (329)
T ss_pred HHHHHhccCCcEEEECCCCCc
Confidence 445555577999999999999
No 343
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.74 E-value=40 Score=36.73 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.|+||||++|+|..
T Consensus 38 ~SGaGKSTLLR~lng 52 (258)
T COG3638 38 PSGAGKSTLLRSLNG 52 (258)
T ss_pred CCCCcHHHHHHHHhc
Confidence 788999999999887
No 344
>KOG0948|consensus
Probab=30.72 E-value=81 Score=39.74 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=39.7
Q ss_pred HHHHHHHhccCCC---CceEEEEcC-------CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCc
Q psy9553 973 SALWRKTLKLKPG---DHVWLVLDG-------PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASP 1042 (1282)
Q Consensus 973 ~~~~r~~~~~~~~---~~~WivfDG-------~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asP 1042 (1282)
|-|+|......+. +-.|||||- .=--+|=|+ +|-||+++|++|=-..+.+|--
T Consensus 219 TEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET-----------------IIllP~~vr~VFLSATiPNA~q 281 (1041)
T KOG0948|consen 219 TEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET-----------------IILLPDNVRFVFLSATIPNARQ 281 (1041)
T ss_pred HHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee-----------------EEeccccceEEEEeccCCCHHH
Confidence 6688877643322 347999995 112346665 6899999999995444444321
Q ss_pred --cchh-----cccccccC
Q psy9553 1043 --ATVS-----RNGMVYMS 1054 (1282)
Q Consensus 1043 --AtvS-----Rcgmvy~~ 1054 (1282)
-.|+ -|-+||-|
T Consensus 282 FAeWI~~ihkQPcHVVYTd 300 (1041)
T KOG0948|consen 282 FAEWICHIHKQPCHVVYTD 300 (1041)
T ss_pred HHHHHHHHhcCCceEEeec
Confidence 1122 27777755
No 345
>KOG0733|consensus
Probab=30.70 E-value=24 Score=43.24 Aligned_cols=10 Identities=50% Similarity=0.541 Sum_probs=0.0
Q ss_pred EEEecCCCCC
Q psy9553 1273 VLLIGESGKL 1282 (1282)
Q Consensus 1273 ~ll~G~~Gt~ 1282 (1282)
||||||||||
T Consensus 548 vLL~GPPGCG 557 (802)
T KOG0733|consen 548 VLLCGPPGCG 557 (802)
T ss_pred eEEeCCCCcc
No 346
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.69 E-value=9.5e+02 Score=28.32 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q psy9553 210 QLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEA 289 (1282)
Q Consensus 210 ~lK~~L~~~~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~ 289 (1282)
.||-.+....+.|...+-+. ..++..+............+|.. ++-..+.+|.++...+..++++..+-
T Consensus 206 qLKv~~~~d~kDWR~hleqm--~~~~~~I~~~~~~~~~~L~kl~~---------~i~~~lekI~sREk~iN~qle~l~~e 274 (359)
T PF10498_consen 206 QLKVTIRADAKDWRSHLEQM--KQHKKSIESALPETKSQLDKLQQ---------DISKTLEKIESREKYINNQLEPLIQE 274 (359)
T ss_pred hheeeccCCcchHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy9553 290 YNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLS 369 (1282)
Q Consensus 290 ~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~ 369 (1282)
|. ........+.....+++..+.. +..+..++.++++..+.+.+..|....+.+
T Consensus 275 Yr------------------~~~~~ls~~~~~y~~~s~~V~~--------~t~~L~~IseeLe~vK~emeerg~~mtD~s 328 (359)
T PF10498_consen 275 YR------------------SAQDELSEVQEKYKQASEGVSE--------RTRELAEISEELEQVKQEMEERGSSMTDGS 328 (359)
T ss_pred HH------------------HHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH
Q psy9553 370 P-REASDRLILFQNRFDGMWRKL 391 (1282)
Q Consensus 370 ~-~ea~~~l~~~~~~l~~l~~~~ 391 (1282)
| -..-+.+..+++++.++.-+.
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
No 347
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=30.56 E-value=63 Score=33.22 Aligned_cols=24 Identities=29% Similarity=0.113 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
+.++||||+.+.|...+...|..+
T Consensus 9 ~~gsGKTTli~~L~~~l~~~g~~V 32 (159)
T cd03116 9 YSGSGKTTLLEKLIPALSARGLRV 32 (159)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcE
Confidence 457999999999999998766543
No 348
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=30.55 E-value=50 Score=35.26 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|+|+|||++++.+..++..-|.
T Consensus 26 ~aGtGKT~~l~~~~~~~~~~g~ 47 (196)
T PF13604_consen 26 PAGTGKTTLLKALAEALEAAGK 47 (196)
T ss_dssp STTSTHHHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHHHHhCCC
Confidence 7999999999999999887653
No 349
>PRK00131 aroK shikimate kinase; Reviewed
Probab=30.21 E-value=34 Score=35.33 Aligned_cols=17 Identities=24% Similarity=-0.021 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+-+.|++.+
T Consensus 12 ~~GsGKstla~~La~~l 28 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68899999999999987
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.12 E-value=46 Score=38.49 Aligned_cols=31 Identities=16% Similarity=-0.095 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|.|+||||+...|+..+..-|..+.+...++
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 8999999999999999876554443333343
No 351
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=30.12 E-value=37 Score=40.90 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=20.8
Q ss_pred CcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1247 SSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1247 ~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.++++|-.. ...++.. +..+++++|+||||||
T Consensus 175 ~d~~i~e~~---le~l~~~-L~~~~~iil~GppGtG 206 (459)
T PRK11331 175 NDLFIPETT---IETILKR-LTIKKNIILQGPPGVG 206 (459)
T ss_pred hcccCCHHH---HHHHHHH-HhcCCCEEEECCCCCC
Confidence 345555332 2334444 4468899999999999
No 352
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=30.10 E-value=59 Score=33.18 Aligned_cols=40 Identities=18% Similarity=0.024 Sum_probs=22.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMF 957 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~Ly 957 (1282)
|+|+|||+++-..+-..-.-+...+..++-|..-...+.+
T Consensus 22 ptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~ 61 (169)
T PF00270_consen 22 PTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQF 61 (169)
T ss_dssp STTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccc
Confidence 8999999997653332211123346666777544444443
No 353
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=30.09 E-value=84 Score=33.79 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=33.4
Q ss_pred CCCCChhHHHHHHHHHHHh-cCCCceeeeeccCCCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSE-VEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~-~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.-|.||||+.-.|+.++.. .|.++-....||..-+...++|.
T Consensus 44 kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~ 86 (207)
T TIGR03018 44 LPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGL 86 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCC
Confidence 4679999999999999986 57766666788887667777774
No 354
>KOG0989|consensus
Probab=30.05 E-value=39 Score=38.12 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHHHHHh-cCCcEEEecCCCCC
Q psy9553 1260 DYLVNCIAK-QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1260 ~~l~~~~~~-~~~~~ll~G~~Gt~ 1282 (1282)
.-|.+.+.. ..-+.||.||||||
T Consensus 46 ~~L~~a~~~~~lp~~LFyGPpGTG 69 (346)
T KOG0989|consen 46 QVLKNALLRRILPHYLFYGPPGTG 69 (346)
T ss_pred HHHHHHHhhcCCceEEeeCCCCCc
Confidence 445666666 44467889999999
No 355
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=29.74 E-value=34 Score=37.22 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++.+
T Consensus 10 ~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 10 PSGAGKSTVAKAVAEKL 26 (217)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998865
No 356
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=29.69 E-value=73 Score=34.68 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCC------CccccchHHHHHHHHhccCCCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVAT------NDWTDGIFSALWRKTLKLKPGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t------~eW~dG~~~~~~r~~~~~~~~~~~Wiv 991 (1282)
++|+||||+.+.|. .+..++++-. +...|+|.-+... .-|.+ +...+. ..........+||
T Consensus 20 ~~G~GKtt~a~~~~---------~~~~~~~~d~-~~~~l~g~~~~~v~~~d~~~~~~~--~~d~l~-~~~~~~~~ydtVV 86 (220)
T TIGR01618 20 KPGTGKTSTIKYLP---------GKTLVLSFDM-SSKVLIGDENVDIADHDDMPPIQA--MVEFYV-MQNIQAVKYDNIV 86 (220)
T ss_pred CCCCCHHHHHHhcC---------CCCEEEeccc-cchhccCCCCCceeecCCCCCHHH--HHHHHH-HHHhccccCCEEE
Confidence 68899999776663 2223344332 3445666533211 12222 122222 2233345578999
Q ss_pred EcC
Q psy9553 992 LDG 994 (1282)
Q Consensus 992 fDG 994 (1282)
+|-
T Consensus 87 IDs 89 (220)
T TIGR01618 87 IDN 89 (220)
T ss_pred Eec
Confidence 996
No 357
>KOG0971|consensus
Probab=29.65 E-value=1.4e+03 Score=29.97 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9553 339 DLADNLAQFRQDKVDYCHEYRTSGP 363 (1282)
Q Consensus 339 ~L~~~~~~f~~~i~~~~~~~~~~~p 363 (1282)
.+++.++.+..+++-++.+....|.
T Consensus 336 ~lkEr~deletdlEILKaEmeekG~ 360 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEKGS 360 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666777777777776665543
No 358
>PRK05439 pantothenate kinase; Provisional
Probab=29.54 E-value=50 Score=37.96 Aligned_cols=20 Identities=30% Similarity=0.149 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|.|+||||+.+.|+..+...
T Consensus 94 ~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 94 SVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 78999999999999988765
No 359
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=29.53 E-value=49 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|+||||||+.+.|...+..
T Consensus 140 ~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 140 GTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 7999999999999887754
No 360
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.49 E-value=34 Score=37.64 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=26.3
Q ss_pred ccccchhHHHHHHHHHHHH-hcCCcEEEecCCCCC
Q psy9553 1249 ILVPIADNVRIDYLVNCIA-KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1249 ~~vpt~dt~r~~~l~~~~~-~~~~~~ll~G~~Gt~ 1282 (1282)
..+||.+-...--+++-+. ..+-=|++||+||||
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSG 139 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSG 139 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCC
Confidence 4578888887777777664 455578999999998
No 361
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=29.49 E-value=25 Score=27.09 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=13.7
Q ss_pred CCCCCC--ccchhcccccccC
Q psy9553 1036 NIDNAS--PATVSRNGMVYMS 1054 (1282)
Q Consensus 1036 dL~~as--PAtvSRcgmvy~~ 1054 (1282)
|+.+.+ +.|=+.|||+|..
T Consensus 5 d~gq~~~~~~~C~~CgM~Y~~ 25 (41)
T PF13878_consen 5 DLGQKSFGATTCPTCGMLYSP 25 (41)
T ss_pred eCCCCccCCcCCCCCCCEECC
Confidence 344444 5788999999986
No 362
>KOG0994|consensus
Probab=29.35 E-value=1.6e+03 Score=30.46 Aligned_cols=6 Identities=0% Similarity=-0.225 Sum_probs=2.7
Q ss_pred HHHHhc
Q psy9553 164 INRRDV 169 (1282)
Q Consensus 164 ~~~f~~ 169 (1282)
+..|+.
T Consensus 1480 v~~Flt 1485 (1758)
T KOG0994|consen 1480 VRDFLT 1485 (1758)
T ss_pred HHHHhc
Confidence 344543
No 363
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=29.30 E-value=34 Score=42.74 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.9
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
..+..|+||+||||||
T Consensus 83 ~~~~~~vLi~Ge~GtG 98 (531)
T TIGR02902 83 GPNPQHVIIYGPPGVG 98 (531)
T ss_pred CCCCceEEEECCCCCC
Confidence 3467899999999999
No 364
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.30 E-value=1.4e+03 Score=29.67 Aligned_cols=86 Identities=13% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHhHHHHHHhhHHHHHHHHhh----hhcC------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHH
Q psy9553 272 IRDQEVDMELKIEPIEEAYNVI----TRYD------LPVDKED-LEQVDSLRYTWQKLLARAMTANVLLTTMQ--PRFEQ 338 (1282)
Q Consensus 272 i~~~~~~le~~i~~i~e~~~lL----~~~~------~~l~~e~-~~~~~~l~~~w~~l~~~~~~~~~~l~~~k--~~f~~ 338 (1282)
+.+....++.++++|+...++| ..|+ ++..-++ ...+..|...|..|...++..+..+.+.+ .-|+.
T Consensus 197 l~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~ 276 (683)
T PF08580_consen 197 LYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRN 276 (683)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3446677888888888887776 3342 1111122 23455677778888877777776665543 23433
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9553 339 DLADNLAQFRQDKVDYCHEY 358 (1282)
Q Consensus 339 ~L~~~~~~f~~~i~~~~~~~ 358 (1282)
+..++...-+.++....+.
T Consensus 277 -l~~q~~~m~esver~~~kl 295 (683)
T PF08580_consen 277 -LGRQAQKMCESVERSLSKL 295 (683)
T ss_pred -HHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444433
No 365
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=29.26 E-value=30 Score=36.52 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|...+
T Consensus 33 ~tGSGKTTll~aL~~~i 49 (186)
T cd01130 33 GTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 79999999998888765
No 366
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=29.25 E-value=35 Score=41.02 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1257 VRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1257 ~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
...-..++....++-+||++|+||||
T Consensus 233 ~~ll~~i~~VA~Sd~tVLi~GETGtG 258 (550)
T COG3604 233 RQLLKEIEVVAKSDSTVLIRGETGTG 258 (550)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCcc
Confidence 34455567778999999999999999
No 367
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=28.97 E-value=56 Score=34.04 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~ 952 (1282)
|+|+|||.+.+.|++.+.- +......++|--..+
T Consensus 11 psGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLFV-GSERPLIRIDMSEYS 44 (171)
T ss_dssp STTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHC
T ss_pred CCCCCHHHHHHHHHHHhcc-CCccchHHHhhhccc
Confidence 8999999999999998852 333444455544444
No 368
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=28.96 E-value=29 Score=37.62 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|+|+||||+.++++..+.. ..+..+--++.. -|=+..++... ..+.-+..|= -
T Consensus 58 PPG~GKTTLA~IIA~e~~~-----~~~~~sg~~i~k---------------~~dl~~il~~l-----~~~~ILFIDEIHR 112 (233)
T PF05496_consen 58 PPGLGKTTLARIIANELGV-----NFKITSGPAIEK---------------AGDLAAILTNL-----KEGDILFIDEIHR 112 (233)
T ss_dssp STTSSHHHHHHHHHHHCT-------EEEEECCC--S---------------CHHHHHHHHT-------TT-EEEECTCCC
T ss_pred CCccchhHHHHHHHhccCC-----CeEeccchhhhh---------------HHHHHHHHHhc-----CCCcEEEEechhh
Confidence 7999999999999987642 222233222221 01133444332 2234555554 1
Q ss_pred CChhhhhhhhhhccCCcc-ccccCC-----CeeecCCCCeEEEecCCCCCCCccchhcccccc-cC
Q psy9553 996 VDSIWIENLNSVLDDNRT-LTLANG-----DRLSMALAVKIIFEPHNIDNASPATVSRNGMVY-MS 1054 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~-L~L~ng-----eri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy-~~ 1054 (1282)
....==|.|-+.|.|.++ +...-| -||.+|+ ..+|==+....--|++--+|.|++. ++
T Consensus 113 lnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~-FTligATTr~g~ls~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 113 LNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP-FTLIGATTRAGLLSSPLRDRFGIVLRLE 177 (233)
T ss_dssp --HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEEEEESSGCCTSHCCCTTSSEEEE--
T ss_pred ccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC-ceEeeeeccccccchhHHhhcceecchh
Confidence 223334555577888877 555544 3566655 7788888888899999999999985 54
No 369
>CHL00195 ycf46 Ycf46; Provisional
Probab=28.87 E-value=28 Score=42.76 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.5
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+.+||+||||||
T Consensus 258 ~pkGILL~GPpGTG 271 (489)
T CHL00195 258 TPRGLLLVGIQGTG 271 (489)
T ss_pred CCceEEEECCCCCc
Confidence 34669999999998
No 370
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.86 E-value=52 Score=38.00 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1257 VRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1257 ~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
....| +..++.+++.+++||+||||
T Consensus 131 ~~~ay-L~~~ie~~~siii~G~t~sG 155 (312)
T COG0630 131 EQAAY-LWLAIEARKSIIICGGTASG 155 (312)
T ss_pred HHHHH-HHHHHHcCCcEEEECCCCCC
Confidence 33444 67788999999999999998
No 371
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=28.55 E-value=53 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.583 Sum_probs=17.1
Q ss_pred CCcccccceecCCCCccccchHHHHHH
Q psy9553 951 ITAAQMFGRLDVATNDWTDGIFSALWR 977 (1282)
Q Consensus 951 i~~~~LyG~~d~~t~eW~dG~~~~~~r 977 (1282)
++.+.-||..++ +++|+ |++..++|
T Consensus 41 ~~~Dg~yG~~~~-~g~W~-GmiGeli~ 65 (65)
T PF10613_consen 41 LVPDGKYGSKNP-NGSWN-GMIGELIR 65 (65)
T ss_dssp E-TTS--EEBET-TSEBE-HHHHHHHT
T ss_pred ECCCCCCcCcCC-CCcCc-CHHHHhcC
Confidence 346779999999 89995 77776654
No 372
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.48 E-value=3e+02 Score=26.14 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhc
Q psy9553 239 DYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRY 296 (1282)
Q Consensus 239 ~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~ 296 (1282)
......++.+..++..-| +-+++..+...+.+++.....++.+++.+....++|-+.
T Consensus 45 ~~~~~Rl~~lE~~l~~LP-t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLP-TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555666666666666 447888888888999999999999999999988888654
No 373
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=28.47 E-value=54 Score=38.06 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=61.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|.||||||+.+.|.+.|... ..|++ +--+| +|===++++.-+|+...+.-+. .++|+++
T Consensus 96 Pvg~GKSsl~~~Lk~~le~y----~~Y~l--~~~Pm-----------~e~PL~L~P~~~r~~~~~~~~~----~i~g~l~ 154 (358)
T PF08298_consen 96 PVGGGKSSLAELLKRGLEEY----PIYTL--KGCPM-----------HEEPLHLFPKELRREFEDELGI----RIEGELC 154 (358)
T ss_pred CCCCCHHHHHHHHHHHhheE----EEEEe--cCCcc-----------ccChhhhCCHhHHHHHHHHhCc----ccCCCcC
Confidence 89999999999999999865 55655 21222 1212256666677665443332 6699999
Q ss_pred hhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCC
Q psy9553 998 SIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGL 1058 (1282)
Q Consensus 998 ~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~ 1058 (1282)
| |+- ++++.--.|+.=. |.|.- .-|.---|.|+.-++|++=
T Consensus 155 p-~~~--------~~L~~~y~Gd~~~--------~~V~r---~~~S~~~r~GI~~f~P~D~ 195 (358)
T PF08298_consen 155 P-WCR--------KRLLEEYGGDIEK--------FRVER---LYFSERDRVGIGTFEPGDE 195 (358)
T ss_pred H-HHH--------HHHHHHhCCCccE--------EEEEE---EccceecceeEEEECCCCC
Confidence 9 442 1233344555211 33332 3456667899999998873
No 374
>PRK08116 hypothetical protein; Validated
Probab=28.44 E-value=65 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.3
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+.+++|+|++|||
T Consensus 113 ~~~gl~l~G~~GtG 126 (268)
T PRK08116 113 ENVGLLLWGSVGTG 126 (268)
T ss_pred CCceEEEECCCCCC
Confidence 45679999999999
No 375
>PRK08181 transposase; Validated
Probab=28.19 E-value=61 Score=36.53 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=49.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC---
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--- 994 (1282)
|+|+|||.+...++.++..-|..+.. ++..+|...+-. -+.+|-+...++...+ ..-+|+|-
T Consensus 114 p~GtGKTHLa~Aia~~a~~~g~~v~f-------~~~~~L~~~l~~---a~~~~~~~~~l~~l~~-----~dLLIIDDlg~ 178 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIENGWRVLF-------TRTTDLVQKLQV---ARRELQLESAIAKLDK-----FDLLILDDLAY 178 (269)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCceee-------eeHHHHHHHHHH---HHhCCcHHHHHHHHhc-----CCEEEEecccc
Confidence 89999999999998877655544322 345566665532 1345656666666542 34788884
Q ss_pred -CCChhhhhhhhhhcc
Q psy9553 995 -PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 995 -~vd~~WiE~mnsvlD 1009 (1282)
+.+..|.+-+-.+++
T Consensus 179 ~~~~~~~~~~Lf~lin 194 (269)
T PRK08181 179 VTKDQAETSVLFELIS 194 (269)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 346667777766665
No 376
>KOG2129|consensus
Probab=28.04 E-value=1.1e+03 Score=27.96 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 316 QKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRT 360 (1282)
Q Consensus 316 ~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~ 360 (1282)
.+++..+-+....++..++.....|-+.+++++.+-.-+..++++
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444555566666677777888888889998888888887754
No 377
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=27.95 E-value=35 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+||||+.+.|++.+
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 67899999999998874
No 378
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=27.91 E-value=37 Score=33.20 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
+.|+||||..|-+++++..
T Consensus 23 dLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp STTSSHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 6789999999999999843
No 379
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=27.85 E-value=40 Score=33.96 Aligned_cols=17 Identities=35% Similarity=0.110 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|++.+
T Consensus 7 ~~GsGKstla~~la~~l 23 (154)
T cd00464 7 MMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999887
No 380
>COG1084 Predicted GTPase [General function prediction only]
Probab=27.81 E-value=7.4e+02 Score=28.69 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhHHHHHHHHHh
Q psy9553 837 QIGILGIQMIWTRDAESALSQ 857 (1282)
Q Consensus 837 Qvvl~~~qi~wT~~ve~al~~ 857 (1282)
|.-...+++.|++.+-+.+.+
T Consensus 91 ~~k~sLs~v~~A~~~i~~l~~ 111 (346)
T COG1084 91 HLKISLSAVSWASKIIEKLAR 111 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888877766644
No 381
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=27.78 E-value=34 Score=38.70 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++|+.+.-.
T Consensus 36 pSGaGKsTlLRiIAGLe 52 (345)
T COG1118 36 PSGAGKSTLLRIIAGLE 52 (345)
T ss_pred CCCCcHHHHHHHHhCcC
Confidence 79999999999988743
No 382
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=27.75 E-value=1.3e+03 Score=28.94 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9553 369 SPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLP 404 (1282)
Q Consensus 369 ~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~ 404 (1282)
........+..+.++++++.+-.+.+.....+++..
T Consensus 218 ~~~~vf~~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~ 253 (579)
T PF08385_consen 218 DEKKVFGRLDAFKERLEDIKEIRETHEQFSRLLKSE 253 (579)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334555668888888888887777777666666655
No 383
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=27.75 E-value=59 Score=40.44 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1256 NVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1256 t~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
..+..-.+......+.|||++|++|||
T Consensus 196 ~~~~~~~i~~~a~~~~pVlI~Ge~GtG 222 (509)
T PRK05022 196 MQQLKKEIEVVAASDLNVLILGETGVG 222 (509)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCcc
Confidence 345555677788899999999999999
No 384
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.72 E-value=1.3e+03 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHhhHHHHHHHHhhh
Q psy9553 269 LKRIRDQEVDMELKIEPIEEAYNVIT 294 (1282)
Q Consensus 269 i~~i~~~~~~le~~i~~i~e~~~lL~ 294 (1282)
+..+.......+..+......+..+.
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555555555553
No 385
>PRK04040 adenylate kinase; Provisional
Probab=27.54 E-value=40 Score=35.71 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
++||||||+.+.|++.+.
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 578999999999999874
No 386
>CHL00175 minD septum-site determining protein; Validated
Probab=27.36 E-value=58 Score=36.89 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL 960 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~ 960 (1282)
-|.||||+.--|+.|+.+.|..+-++.++|..=+..-++|.-
T Consensus 25 GGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~ 66 (281)
T CHL00175 25 GGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLE 66 (281)
T ss_pred CCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCC
Confidence 469999999999999999887776777888755566677753
No 387
>KOG0517|consensus
Probab=27.08 E-value=2.1e+03 Score=31.18 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Q psy9553 258 DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKED---LEQVDSLRYTWQKLLARAMTANVLLTTMQ- 333 (1282)
Q Consensus 258 ~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~---~~~~~~l~~~w~~l~~~~~~~~~~l~~~k- 333 (1282)
++.-+..+...+..+......++.++..+...-..+++ ..|.+- -..+..+...|..+...+.+....+++..
T Consensus 982 Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~---~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~ 1058 (2473)
T KOG0517|consen 982 DLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEE---EHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGG 1058 (2473)
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444333332 234332 23456788889999888887777766532
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhcCCCCCCch
Q psy9553 334 -PRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLIL---FQNRFDGMWRKLQTYQSGEELFGLPTTDYP 409 (1282)
Q Consensus 334 -~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~---~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~ 409 (1282)
..|...+ +.|..=+.......... ....+..+|-..|+. +.++++..++.++.+...-+.+.-. ...+
T Consensus 1059 lQ~Fl~dl----d~f~~Wl~~tq~~~~se---e~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g-~~~p 1130 (2473)
T KOG0517|consen 1059 LQRFLRDL----DDFQAWLESTQTQVASE---EGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADG-QTDP 1130 (2473)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCc
Confidence 2343333 34433333333332221 123356666555554 4445555555555554433322111 2344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9553 410 ELAQIRKELNLLQKLYKLYNDVIDRVSSYY 439 (1282)
Q Consensus 410 ~L~~l~~el~~~~~lW~~~~~~~~~~~~w~ 439 (1282)
+...+.+.+..+..=|.-...-|.....|.
T Consensus 1131 ~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L 1160 (2473)
T KOG0517|consen 1131 QYLFLRERLQALGTGWEELHRMWENRQKWL 1160 (2473)
T ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555555
No 388
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=33 Score=39.55 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.3
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+.-=+-|||.||||||
T Consensus 182 I~PPKGVLLYGPPGTG 197 (406)
T COG1222 182 IDPPKGVLLYGPPGTG 197 (406)
T ss_pred CCCCCceEeeCCCCCc
Confidence 4455779999999999
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=26.96 E-value=50 Score=31.29 Aligned_cols=19 Identities=21% Similarity=0.001 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|+|+|||++.+.|++.+..
T Consensus 6 ~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5699999999999988764
No 390
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=26.80 E-value=60 Score=36.48 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.||||+.--|+.+|...|..+-+..++|..
T Consensus 10 GvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 10 GIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 6899999999999999999887777889963
No 391
>KOG1942|consensus
Probab=26.77 E-value=45 Score=37.08 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=14.4
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
--.|+.|||.||||||
T Consensus 61 kmaGravLlaGppgtG 76 (456)
T KOG1942|consen 61 KMAGRAVLLAGPPGTG 76 (456)
T ss_pred hccCcEEEEecCCCCc
Confidence 3489999999999998
No 392
>PRK02496 adk adenylate kinase; Provisional
Probab=26.72 E-value=42 Score=35.22 Aligned_cols=17 Identities=24% Similarity=-0.078 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++.+
T Consensus 9 ~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHL 25 (184)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999876
No 393
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=26.70 E-value=41 Score=39.65 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|+||||||++++|...+..
T Consensus 142 pTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 142 ATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 7999999999999888754
No 394
>PRK10536 hypothetical protein; Provisional
Probab=26.69 E-value=56 Score=36.35 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1257 VRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1257 ~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
....+++..+.+ +.-|+++||+|||
T Consensus 62 ~~Q~~~l~al~~-~~lV~i~G~aGTG 86 (262)
T PRK10536 62 EAQAHYLKAIES-KQLIFATGEAGCG 86 (262)
T ss_pred HHHHHHHHHHhc-CCeEEEECCCCCC
Confidence 455566665554 5699999999999
No 395
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=26.57 E-value=75 Score=36.94 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL 960 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~ 960 (1282)
.-|.||||+.-.|+.++...|..+-+...+|+.=+...+||--
T Consensus 39 kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~ 81 (329)
T cd02033 39 KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK 81 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence 3569999999999999999888777777899988888888843
No 396
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.42 E-value=4.8e+02 Score=23.48 Aligned_cols=62 Identities=10% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 371 REASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDR 434 (1282)
Q Consensus 371 ~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~ 434 (1282)
...+...+.+...+.......+.++.....+ .... ...-..+...+..+..-|..+......
T Consensus 37 ~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 37 EEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSG-PEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT-HTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777777777777655555 2222 334477888888888888877665433
No 397
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.35 E-value=49 Score=34.95 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.|||||+++.-+.++|..
T Consensus 21 p~GSGKTaLie~~~~~L~~ 39 (202)
T COG0378 21 PPGSGKTALIEKTLRALKD 39 (202)
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 7899999999888888853
No 398
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.33 E-value=57 Score=32.80 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||++.....++.
T Consensus 36 PSGcGKSTLls~~~G~La 53 (213)
T COG4136 36 PSGCGKSTLLSWMIGALA 53 (213)
T ss_pred CCCccHHHHHHHHHhhcc
Confidence 799999999888887763
No 399
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.28 E-value=9e+02 Score=26.61 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 368 LSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPE-LAQIRKELNLLQKLYKLYNDVIDRVS 436 (1282)
Q Consensus 368 ~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~-L~~l~~el~~~~~lW~~~~~~~~~~~ 436 (1282)
.....++..+.+...++.++..+. -...--.|+-+..+|-. +..++.-|....++|..+......+.
T Consensus 76 ~~ls~~l~~laev~~ki~~~~~~q--a~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~ 143 (234)
T cd07664 76 TALSRALSQLAEVEEKIDQLHQDQ--AFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQ 143 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888887777777664432 22233445656666654 45566777778888887777665554
No 400
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=26.26 E-value=38 Score=36.99 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=13.1
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
+.||||||+.++|+.=
T Consensus 41 eSGsGKSTL~r~l~Gl 56 (252)
T COG1124 41 ESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 7899999988877653
No 401
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=26.25 E-value=64 Score=32.99 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
+.|+||||+.+.|...+...|.
T Consensus 7 ~~gsGKTtl~~~l~~~l~~~G~ 28 (155)
T TIGR00176 7 PKNSGKTTLIERLVKALKARGY 28 (155)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC
Confidence 5689999999999999876553
No 402
>PTZ00202 tuzin; Provisional
Probab=26.16 E-value=30 Score=41.25 Aligned_cols=36 Identities=3% Similarity=-0.035 Sum_probs=26.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL 960 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~ 960 (1282)
|.|+||||+++.+...+. ...+..||. +.++++..+
T Consensus 294 ~~G~GKTTLlR~~~~~l~-----~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG-----MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCCCHHHHHHHHHhcCC-----ceEEEECCC--CHHHHHHHH
Confidence 689999999998886553 336778998 667776544
No 403
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.13 E-value=8.9e+02 Score=26.49 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 368 LSPREASDRLILFQNRFDGMWRKLQTYQS 396 (1282)
Q Consensus 368 ~~~~ea~~~l~~~~~~l~~l~~~~~~l~~ 396 (1282)
.++..+...+..+++++++.+...+....
T Consensus 159 ~s~~sa~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 159 GSSSSAMAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34466777777777777777776665553
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=26.04 E-value=1.8e+02 Score=31.11 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCCCChhHHHHHHHHHHH--hcCCC--ceeeeeccCCCCcccccceecCCCCccccc--hHHHHHHHHhc--cCCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALS--EVEEP--HREMRMNPKAITAAQMFGRLDVATNDWTDG--IFSALWRKTLK--LKPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~--~~~~~--~~~~~inpk~i~~~~LyG~~d~~t~eW~dG--~~~~~~r~~~~--~~~~~~~W 989 (1282)
|-||||||.+++++.+.- ..|.. .....+.| .+++|-.++.. ..=.+| -|+.=++++.. ....++.=
T Consensus 37 ~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~----~dqi~~~~~~~-d~i~~~~s~~~~e~~~l~~i~~~~~~~~l 111 (202)
T cd03243 37 PNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL----VDRIFTRIGAE-DSISDGRSTFMAELLELKEILSLATPRSL 111 (202)
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCCccccccccCC----cCEEEEEecCc-ccccCCceeHHHHHHHHHHHHHhccCCeE
Confidence 688999999999986542 22321 11111222 34454444321 111222 23333333322 12245788
Q ss_pred EEEcCC---CChhhhhhh
Q psy9553 990 LVLDGP---VDSIWIENL 1004 (1282)
Q Consensus 990 ivfDG~---vd~~WiE~m 1004 (1282)
+++|=| .|+..-+.+
T Consensus 112 lllDEp~~gld~~~~~~l 129 (202)
T cd03243 112 VLIDELGRGTSTAEGLAI 129 (202)
T ss_pred EEEecCCCCCCHHHHHHH
Confidence 999998 788776654
No 405
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=26.02 E-value=42 Score=35.10 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||..+.|++.+
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68999999999998876
No 406
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=26.02 E-value=53 Score=36.72 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=34.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.|.||||+--.|+.++...|..+-+...||.. +.+.+||.
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~ 48 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQ 48 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCC
Confidence 46899999999999999988887777889975 88888886
No 407
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=25.97 E-value=43 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.8
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
+.|+||||..+.+++++..
T Consensus 30 ~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 6889999999999999853
No 408
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=25.87 E-value=49 Score=34.55 Aligned_cols=21 Identities=33% Similarity=0.189 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+++.|...+..-|
T Consensus 14 ~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 14 WSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred CCCChHHHHHHHHHHHHhhcC
Confidence 578999999999999887644
No 409
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=25.84 E-value=48 Score=33.51 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=47.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceee------eeccCCCCcccccceecCCCCcc-ccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREM------RMNPKAITAAQMFGRLDVATNDW-TDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~------~inpk~i~~~~LyG~~d~~t~eW-~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|+||||||+.+.|++.+.- .+... -+..++-.-.++-.+++ .++. .|.++..+++.........+. +
T Consensus 4 ~PgsGK~t~~~~la~~~~~---~~is~~~llr~~~~~~s~~g~~i~~~l~--~g~~vp~~~v~~ll~~~l~~~~~~~g-~ 77 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRYGL---VHISVGDLLREEIKSDSELGKQIQEYLD--NGELVPDELVIELLKERLEQPPCNRG-F 77 (151)
T ss_dssp STTSSHHHHHHHHHHHHTS---EEEEHHHHHHHHHHTTSHHHHHHHHHHH--TTSS--HHHHHHHHHHHHHSGGTTTE-E
T ss_pred CCCCChHHHHHHHHHhcCc---ceechHHHHHHHHhhhhHHHHHHHHHHH--hhccchHHHHHHHHHHHHhhhcccce-e
Confidence 7899999999999997632 11000 01111111122222333 2333 455667777766554433444 4
Q ss_pred EEcC-CCChhhhhhhhhhcc
Q psy9553 991 VLDG-PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 991 vfDG-~vd~~WiE~mnsvlD 1009 (1282)
|+|| |-...-++.+..+|.
T Consensus 78 ildGfPrt~~Qa~~l~~~~~ 97 (151)
T PF00406_consen 78 ILDGFPRTLEQAEALEEILE 97 (151)
T ss_dssp EEESB-SSHHHHHHHHHHHH
T ss_pred eeeeccccHHHHHHHHHHHh
Confidence 6888 999988888877654
No 410
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=25.78 E-value=78 Score=38.17 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMF 957 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~Ly 957 (1282)
++|+|||++++.|...+-.- ....++++||---....|
T Consensus 50 ~tGsGKt~~i~~l~~~~~~~--~~~~vi~D~kg~~~~~~~ 87 (410)
T cd01127 50 TTGTGKTTQIRELLASIRAR--GDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred CCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcchhHhhc
Confidence 89999999987776654333 346677888865444443
No 411
>COG2262 HflX GTPases [General function prediction only]
Probab=25.73 E-value=73 Score=37.52 Aligned_cols=74 Identities=28% Similarity=0.342 Sum_probs=46.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCc--cccc--------------h---HHHHHHHH
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATND--WTDG--------------I---FSALWRKT 979 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~e--W~dG--------------~---~~~~~r~~ 979 (1282)
+..||||+.+.|-.|- ....++||--+||.||- +-|| + +-..||..
T Consensus 201 TNAGKSTL~N~LT~~~---------------~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 201 TNAGKSTLFNALTGAD---------------VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred ccccHHHHHHHHhccC---------------eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 4499999888665331 13456677777777764 5554 1 23344444
Q ss_pred hccC-CCCceEEEEcCCCChhhhhhhhhhc
Q psy9553 980 LKLK-PGDHVWLVLDGPVDSIWIENLNSVL 1008 (1282)
Q Consensus 980 ~~~~-~~~~~WivfDG~vd~~WiE~mnsvl 1008 (1282)
.... ..+--=.|.|+ -||.|.+.+.+|.
T Consensus 266 LEE~~~aDlllhVVDa-Sdp~~~~~~~~v~ 294 (411)
T COG2262 266 LEEVKEADLLLHVVDA-SDPEILEKLEAVE 294 (411)
T ss_pred HHHhhcCCEEEEEeec-CChhHHHHHHHHH
Confidence 3332 22345678898 7889999999884
No 412
>PRK05541 adenylylsulfate kinase; Provisional
Probab=25.63 E-value=49 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.053 Sum_probs=16.7
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
+.||||||+.+.|++.+..
T Consensus 15 ~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6789999999999998864
No 413
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=25.63 E-value=52 Score=38.49 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1259 IDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1259 ~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
...++..+++.+.+++++|++|+|
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsG 190 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSG 190 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCC
Confidence 345678888999999999999998
No 414
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=25.61 E-value=71 Score=36.58 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=35.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL 960 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~ 960 (1282)
-|.||||+--.|+.+|...|..+-...++|..=+..-|+|..
T Consensus 9 GGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~ 50 (296)
T TIGR02016 9 GGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGI 50 (296)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCC
Confidence 368999999999999999888877788999987777788743
No 415
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=25.58 E-value=72 Score=32.03 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=18.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
|.+|||||+.+.|..-+.+.|..+
T Consensus 8 ~~~sGKTTl~~~Li~~l~~~g~~v 31 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINELKRRGYRV 31 (140)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--E
T ss_pred CCCCCHHHHHHHHHHHHhHcCCce
Confidence 456999999999999998766543
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=25.57 E-value=36 Score=33.60 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 19 ~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 19 PNGSGKSTLLKALAGLL 35 (137)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred cCCCccccceeeecccc
Confidence 67899999888777654
No 417
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.57 E-value=1.1e+03 Score=27.27 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCC-
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTIT-DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDL- 298 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~-~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~- 298 (1282)
.+...+.+.+.+.+...++.+.+.++++.+.+...+. +.++ +..++.....+...+.+..+....|.....
T Consensus 142 ~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~-------l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~ 214 (324)
T PRK09546 142 GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGE-------LALLRKQLIVMRRYMAPQRDVFARLASERLP 214 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4667778888888888888888888888777754321 2333 444555555666666666777666654322
Q ss_pred CCCHHHHHHHHHH
Q psy9553 299 PVDKEDLEQVDSL 311 (1282)
Q Consensus 299 ~l~~e~~~~~~~l 311 (1282)
.+++++...+..+
T Consensus 215 ~~~~~~~~~l~Dv 227 (324)
T PRK09546 215 WMSDDDRRRMQDI 227 (324)
T ss_pred ccChHHHHHHHHH
Confidence 2555544444333
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=25.42 E-value=45 Score=35.01 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|.||||+.+.|.+..
T Consensus 12 PSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 12 PSGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 89999999999999987
No 419
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.22 E-value=67 Score=36.28 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=36.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCce--------eeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHR--------EMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~--------~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~W 989 (1282)
|+||||||.+-.+-.-+++-...|. ++.=|-||+=.+.=-| .+|+. |+..+|.+....++
T Consensus 133 pTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG---~dT~s-----F~~aLraALReDPD---- 200 (353)
T COG2805 133 PTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVG---RDTLS-----FANALRAALREDPD---- 200 (353)
T ss_pred CCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhc---ccHHH-----HHHHHHHHhhcCCC----
Confidence 7999999976555555544322222 2223446655443334 23443 55666666554433
Q ss_pred EEEcCCC
Q psy9553 990 LVLDGPV 996 (1282)
Q Consensus 990 ivfDG~v 996 (1282)
|||=|.+
T Consensus 201 VIlvGEm 207 (353)
T COG2805 201 VILVGEM 207 (353)
T ss_pred EEEEecc
Confidence 6777765
No 420
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=25.16 E-value=41 Score=35.22 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=12.3
Q ss_pred CCCCChhHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLM 931 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~ 931 (1282)
|.|+||||+++++.
T Consensus 29 ~nG~GKSTLl~~il 42 (176)
T cd03238 29 VSGSGKSTLVNEGL 42 (176)
T ss_pred CCCCCHHHHHHHHh
Confidence 78999999999874
No 421
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=25.15 E-value=45 Score=34.95 Aligned_cols=17 Identities=12% Similarity=-0.109 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|+..+
T Consensus 11 ~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 11 VSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68899999999988865
No 422
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.13 E-value=69 Score=32.82 Aligned_cols=23 Identities=22% Similarity=-0.087 Sum_probs=18.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
.||||||+.+.|.+.|...|.++
T Consensus 11 sGsGKtTlA~~L~~~L~~~g~~~ 33 (156)
T PF01583_consen 11 SGSGKTTLARALERRLFARGIKV 33 (156)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-E
T ss_pred CCCCHHHHHHHHHHHHHHcCCcE
Confidence 57999999999999998877543
No 423
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=25.12 E-value=40 Score=36.49 Aligned_cols=16 Identities=25% Similarity=-0.025 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 21 ~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 21 APGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7889999999998864
No 424
>PF13479 AAA_24: AAA domain
Probab=25.12 E-value=1.1e+02 Score=33.17 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG 994 (1282)
|+|+||||....+ +.+ -+.-...-+-+...+++.-...=..|.| |-..+..+. +.....++||+|.
T Consensus 11 ~~G~GKTt~a~~~-------~k~-l~id~E~g~~~~~~~~~~~~i~i~s~~~--~~~~~~~l~-~~~~~y~tiVIDs 76 (213)
T PF13479_consen 11 PPGSGKTTLAASL-------PKP-LFIDTENGSDSLKFLDDGDVIPITSWED--FLEALDELE-EDEADYDTIVIDS 76 (213)
T ss_pred CCCCCHHHHHHhC-------CCe-EEEEeCCCccchhhhcCCCeeCcCCHHH--HHHHHHHHH-hccCCCCEEEEEC
Confidence 6889999876655 111 1112233333333442111111126665 333333322 2344678999997
No 425
>KOG0731|consensus
Probab=25.12 E-value=35 Score=43.56 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=11.1
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
+=|||+||||||
T Consensus 345 kGvLL~GPPGTG 356 (774)
T KOG0731|consen 345 KGVLLVGPPGTG 356 (774)
T ss_pred CceEEECCCCCc
Confidence 579999999999
No 426
>KOG4460|consensus
Probab=25.11 E-value=1.3e+03 Score=28.23 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhh
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTI-TDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVI 293 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p-~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL 293 (1282)
+......+.+++.+-..-+.+..+++.-...|.... .-+.++.+..+-...++++...++++++.+.+..+.|
T Consensus 562 ~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L 635 (741)
T KOG4460|consen 562 QLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDL 635 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444555555555555555544444333322 1234555555555556666666666666666555544
No 427
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=25.07 E-value=82 Score=30.47 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
.|+|||++-..|+.++...|.++.....+|.+
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id~D~~~ 39 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAIDADPDD 39 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECCchh
Confidence 57999999999999998777666666677733
No 428
>KOG2273|consensus
Probab=25.01 E-value=1.4e+03 Score=28.33 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy9553 310 SLRYTWQKLLARAMT 324 (1282)
Q Consensus 310 ~l~~~w~~l~~~~~~ 324 (1282)
++...+.++...+..
T Consensus 278 e~~~~i~~l~~~l~~ 292 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKK 292 (503)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 429
>PRK13975 thymidylate kinase; Provisional
Probab=24.90 E-value=48 Score=35.15 Aligned_cols=18 Identities=28% Similarity=0.023 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.|+||||..+.|++.+.
T Consensus 10 ~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 578999999999999885
No 430
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=24.86 E-value=36 Score=40.66 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.6
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
-+.+||+||||||
T Consensus 165 p~gvLL~GppGtG 177 (389)
T PRK03992 165 PKGVLLYGPPGTG 177 (389)
T ss_pred CCceEEECCCCCC
Confidence 4579999999999
No 431
>PRK06761 hypothetical protein; Provisional
Probab=24.77 E-value=47 Score=37.64 Aligned_cols=28 Identities=18% Similarity=-0.148 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMR 945 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~ 945 (1282)
|.||||||+.+.|++.+...|.....+.
T Consensus 11 ~~GsGKTTla~~L~~~L~~~g~~v~~~~ 38 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQNGIEVELYL 38 (282)
T ss_pred CCCCCHHHHHHHHHHhcCcCceEEEEEe
No 432
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=24.76 E-value=1.5e+02 Score=35.45 Aligned_cols=34 Identities=15% Similarity=-0.037 Sum_probs=27.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeee-ccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRM-NPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~i-npk~i 951 (1282)
.-|.||||+--.|+.++...|..+-+..+ +|-+=
T Consensus 115 KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~n 149 (388)
T PRK13705 115 KGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGT 149 (388)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCc
Confidence 46799999999999999988877666664 88653
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.72 E-value=40 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|++-+
T Consensus 9 ~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 9 PSGVGKSTLVKALLEED 25 (180)
T ss_pred CCCCCHHHHHHHHHccC
Confidence 78999999888887743
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=24.68 E-value=40 Score=35.38 Aligned_cols=17 Identities=35% Similarity=0.251 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 33 PNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCChHHHHHHHHHcCC
Confidence 78999999999887744
No 435
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=24.67 E-value=56 Score=38.78 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1257 VRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1257 ~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+..--++.+..++.|||+.|+||||
T Consensus 88 ~~~~eqik~~ap~~~~vLi~GetGtG 113 (403)
T COG1221 88 QELREQIKAYAPSGLPVLIIGETGTG 113 (403)
T ss_pred HHHHHHHHhhCCCCCcEEEecCCCcc
Confidence 34444455577899999999999998
No 436
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=24.63 E-value=20 Score=45.66 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.++|++=+
T Consensus 369 ~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 369 PTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 89999999888886644
No 437
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.61 E-value=79 Score=35.45 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=14.9
Q ss_pred CCCCChhHHHH-HHHHHHHh
Q psy9553 918 QWLTRKTTCIH-TLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~-~L~~a~~~ 936 (1282)
+.||||||+++ +|..|+..
T Consensus 29 vSGsGKStL~~~~l~~~~~~ 48 (261)
T cd03271 29 VSGSGKSSLINDTLYPALAR 48 (261)
T ss_pred CCCCchHHHHHHHHHHHHHH
Confidence 67899999996 66666654
No 438
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=24.56 E-value=47 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.018 Sum_probs=10.5
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
+.||||||+..+|..
T Consensus 7 tiGCGKTTva~aL~~ 21 (168)
T PF08303_consen 7 TIGCGKTTVALALSN 21 (168)
T ss_pred CCCcCHHHHHHHHHH
Confidence 368999987555544
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=24.54 E-value=44 Score=35.73 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++-+
T Consensus 13 ~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 13 PSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999888854
No 440
>KOG0963|consensus
Probab=24.54 E-value=1.5e+03 Score=28.50 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCchHHHHHHHH
Q psy9553 448 IEEINNELMEFQNRCRKLPKGLKEWPAFHALKRT 481 (1282)
Q Consensus 448 ~~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~ 481 (1282)
+..++.++......+..+.+.+....-|..|+++
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~~sDYeeIK~E 352 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNSRSDYEEIKKE 352 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 4445555555555444444444444334444444
No 441
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=24.41 E-value=56 Score=38.68 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.0
Q ss_pred HHHHHHhcCCcEEEecCCCCC
Q psy9553 1262 LVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1262 l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
+++.++..+.-++++||||||
T Consensus 141 ~~~~l~~~~GlilI~G~TGSG 161 (372)
T TIGR02525 141 LFNSLLPAAGLGLICGETGSG 161 (372)
T ss_pred HHHHHHhcCCEEEEECCCCCC
Confidence 455666677789999999999
No 442
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=24.33 E-value=49 Score=41.07 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=18.7
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|+|+||||+.+.|+++|...
T Consensus 111 PpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 111 PVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCCCchHHHHHHHHHHHhC
Confidence 79999999999999999875
No 443
>PRK13947 shikimate kinase; Provisional
Probab=24.18 E-value=50 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.115 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+-+.|++++.
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 688999999999999873
No 444
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=24.13 E-value=42 Score=40.22 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=11.7
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
+.++||+||||||
T Consensus 116 ~~~iLL~GP~GsG 128 (413)
T TIGR00382 116 KSNILLIGPTGSG 128 (413)
T ss_pred CceEEEECCCCcC
Confidence 4589999999999
No 445
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.12 E-value=43 Score=35.38 Aligned_cols=16 Identities=19% Similarity=-0.022 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+..
T Consensus 26 ~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 26 ANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7889999998888764
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=24.11 E-value=43 Score=35.91 Aligned_cols=16 Identities=25% Similarity=0.036 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 34 KNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999988763
No 447
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=24.08 E-value=42 Score=40.29 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=0.0
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
...++||+||||||
T Consensus 107 ~~~~iLl~Gp~GtG 120 (412)
T PRK05342 107 QKSNILLIGPTGSG 120 (412)
T ss_pred CCceEEEEcCCCCC
No 448
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=24.07 E-value=43 Score=36.23 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 38 ~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 38 PSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 78999999988887643
No 449
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.02 E-value=7e+02 Score=24.58 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9553 297 DLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQD 339 (1282)
Q Consensus 297 ~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~ 339 (1282)
++.+|+=.+.--.++...-..+-+.++.+.+.+...|.++.+.
T Consensus 27 Gws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqR 69 (126)
T PF07889_consen 27 GWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQR 69 (126)
T ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776555556677777777777777777777665444433
No 450
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.01 E-value=53 Score=38.52 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-----CCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-----KPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-----~~~~~~Wivf 992 (1282)
|+|+||||+.++++.+... ....+| .+| +|+ +=+|++... ..+.+.=++.
T Consensus 56 PPG~GKTTlA~liA~~~~~-----~f~~~s--------------Av~----~gv--kdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNA-----AFEALS--------------AVT----SGV--KDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred CCCCCHHHHHHHHHHhhCC-----ceEEec--------------ccc----ccH--HHHHHHHHHHHHHHhcCCceEEEE
Confidence 8999999999999987532 222233 332 222 123333322 1223344444
Q ss_pred cCCCChhhhhhhhhhccCCccccccCCCeeecCCCC-eEEEecCCCCCCCccchhcccccccCC
Q psy9553 993 DGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAV-KIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 993 DG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~-~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
|= |-.+|-.=-|-=+=.+-||-.|-+..++ +=-||+ .||-.|||=+..+.|
T Consensus 111 DE------IHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~l------n~ALlSR~~vf~lk~ 162 (436)
T COG2256 111 DE------IHRFNKAQQDALLPHVENGTIILIGATTENPSFEL------NPALLSRARVFELKP 162 (436)
T ss_pred eh------hhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeee------cHHHhhhhheeeeec
Confidence 43 4555533333333344556655543332 112443 699999998888765
No 451
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.96 E-value=95 Score=37.21 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHH
Q psy9553 898 LITIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 898 Li~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~ 934 (1282)
.|..-+.+.++...+|. .++ |+|+|||++.+.++..+
T Consensus 160 ~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 160 AVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 33444556777777752 333 89999999998888754
No 452
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.95 E-value=52 Score=37.15 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=19.9
Q ss_pred ccchhHHHHHHHHHHHHh-cCCcEEEecCCCCC
Q psy9553 1251 VPIADNVRIDYLVNCIAK-QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1251 vpt~dt~r~~~l~~~~~~-~~~~~ll~G~~Gt~ 1282 (1282)
|||.+-...--++..++. .+-=||.+||||||
T Consensus 105 i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSG 137 (353)
T COG2805 105 IPTLEELGLPPIVRELAESPRGLILVTGPTGSG 137 (353)
T ss_pred CCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCc
Confidence 444444444444445555 44467889999999
No 453
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=23.88 E-value=44 Score=36.03 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 35 ~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 35 PSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999998888764
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.80 E-value=64 Score=39.15 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCCCCceEEEEcCCC-Chhhhhh
Q psy9553 972 FSALWRKTLKLKPGDHVWLVLDGPV-DSIWIEN 1003 (1282)
Q Consensus 972 ~~~~~r~~~~~~~~~~~WivfDG~v-d~~WiE~ 1003 (1282)
|+..+|.+....++ ||+=|.+ |.+-+|-
T Consensus 316 fa~~LRa~LRqDPD----vImVGEIRD~ETAei 344 (500)
T COG2804 316 FARALRAILRQDPD----VIMVGEIRDLETAEI 344 (500)
T ss_pred HHHHHHHHhccCCC----eEEEeccCCHHHHHH
Confidence 78888887754333 4555655 5555543
No 455
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.79 E-value=1.9e+03 Score=29.48 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=61.7
Q ss_pred hhHHhhhHHH--HHHHhc-CCCChHHHHHHHHHHHHHHHHHccCC---CeeEeCceEEEecHHHHHHHHHHHHHHHHHHH
Q psy9553 154 PYKFLWENEM--INRRDV-TNVGLVESEHALRRHGELEAELNIEP---DLHTFGSCIVISVEQLKFGLMTEINSCNRRIA 227 (1282)
Q Consensus 154 ~y~~Lw~~d~--~~~f~~-~~~~l~~~~~~i~~y~~~~~eI~~l~---~~~~iG~~~~Vd~~~lK~~L~~~~~~~~~~l~ 227 (1282)
.|..|...-. +..+-. +...++.++..|..+.++++++.-+. ...+.| -=.||++++- .|..+.+.....|.
T Consensus 1100 rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~-~dkVDFSDIE-kLE~qLq~~~~kL~ 1177 (1439)
T PF12252_consen 1100 RYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSG-TDKVDFSDIE-KLEKQLQVIHTKLY 1177 (1439)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccC-CCcccHHHHH-HHHHHHHHhhhhhH
Confidence 4555543322 433322 34678899999999999999986432 233445 5568888864 46666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Q psy9553 228 FLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELL 269 (1282)
Q Consensus 228 ~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i 269 (1282)
+++.....++++.+. ...|.++.++...+..+
T Consensus 1178 dAyl~eitKqIsaLe----------~e~PKnltdvK~missf 1209 (1439)
T PF12252_consen 1178 DAYLVEITKQISALE----------KEKPKNLTDVKSMISSF 1209 (1439)
T ss_pred HHHHHHHHHHHHHHH----------hhCCCchhhHHHHHHHH
Confidence 555544444443322 23587777665555444
No 456
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=23.79 E-value=56 Score=34.43 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.|+||||++.++.-+|..
T Consensus 27 ~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 27 PNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp STTSSHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHcC
Confidence 6789999999999888853
No 457
>PRK08939 primosomal protein DnaI; Reviewed
Probab=23.75 E-value=76 Score=36.52 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=12.7
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+++++|.||+|||
T Consensus 155 ~~~gl~L~G~~G~G 168 (306)
T PRK08939 155 KVKGLYLYGDFGVG 168 (306)
T ss_pred CCCeEEEECCCCCC
Confidence 56799999999999
No 458
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=23.74 E-value=37 Score=39.72 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.++|...+
T Consensus 170 ~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 170 PTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCCccHHHHHHHHHccc
Confidence 79999999998887765
No 459
>PRK00889 adenylylsulfate kinase; Provisional
Probab=23.69 E-value=72 Score=33.15 Aligned_cols=31 Identities=23% Similarity=0.048 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
+.|+||||+.+.|+..+..-|. .+..++...
T Consensus 12 ~~GsGKST~a~~la~~l~~~g~--~v~~id~D~ 42 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREAGY--PVEVLDGDA 42 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcc
Confidence 5789999999999998865432 234455443
No 460
>PLN02840 tRNA dimethylallyltransferase
Probab=23.63 E-value=65 Score=38.55 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCCCChhHHHHHHHHHHHh--cC-CCceee---eeccCCCCc-------ccccceecCCCCccccchHHHHHHHHhcc
Q psy9553 918 QWLTRKTTCIHTLMAALSE--VE-EPHREM---RMNPKAITA-------AQMFGRLDVATNDWTDGIFSALWRKTLKL 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~--~~-~~~~~~---~inpk~i~~-------~~LyG~~d~~t~eW~dG~~~~~~r~~~~~ 982 (1282)
|+|+|||++...|++.+.. +. ....+| .|-.-..|. ..|+|.+||. .+|+=|-|-...+++..+
T Consensus 29 ptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~-e~ySv~~F~~~A~~~I~~ 105 (421)
T PLN02840 29 PTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPS-DDYSVGAFFDDARRATQD 105 (421)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCC-CceeHHHHHHHHHHHHHH
Confidence 8999999999999988742 11 011222 121111222 3489999985 589989888877777653
No 461
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=23.62 E-value=45 Score=35.89 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 35 PNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999887643
No 462
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.62 E-value=45 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 33 PNGAGKTTLMRILATLT 49 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999988887643
No 463
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=23.57 E-value=44 Score=39.09 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.6
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.++.++|+||||||
T Consensus 77 ~r~il~L~GPPGsG 90 (361)
T smart00763 77 RKQILYLLGPVGGG 90 (361)
T ss_pred CCcEEEEECCCCCC
Confidence 46889999999999
No 464
>KOG0058|consensus
Probab=23.57 E-value=9.1e+02 Score=31.00 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9553 794 VESWLTCLLQMAQQSLHSIIRTAYTSLN 821 (1282)
Q Consensus 794 ve~WL~~le~~m~~tl~~~i~~~~~~~~ 821 (1282)
.-.|+..+.+++++++.+.-.-|-+.+.
T Consensus 308 yG~~~rklS~~~Q~a~A~a~~vaeE~ls 335 (716)
T KOG0058|consen 308 YGKYLRKLSKQTQDALARANQVAEEVLS 335 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999887776655553
No 465
>PRK04296 thymidine kinase; Provisional
Probab=23.56 E-value=1.8e+02 Score=30.78 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|.|+||||...-++..+..-| .++++++|
T Consensus 10 ~~GsGKTT~~l~~~~~~~~~g--~~v~i~k~ 38 (190)
T PRK04296 10 AMNSGKSTELLQRAYNYEERG--MKVLVFKP 38 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 578999987655544443323 34445555
No 466
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.46 E-value=45 Score=36.09 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 37 HSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999998888643
No 467
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.46 E-value=52 Score=33.68 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.7
Q ss_pred CCCChhHHHHHHHHHHHh
Q psy9553 919 WLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~ 936 (1282)
.|+||||+-+.|+++|..
T Consensus 1 ~GsGKStvg~~lA~~L~~ 18 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR 18 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHhCC
Confidence 379999999999999853
No 468
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.41 E-value=45 Score=36.71 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++|...+-
T Consensus 35 pSGsGKTTtLkMINrL 50 (309)
T COG1125 35 PSGSGKTTTLKMINRL 50 (309)
T ss_pred CCCCcHHHHHHHHhcc
Confidence 8999999988776553
No 469
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.41 E-value=59 Score=34.59 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=42.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-------CCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-------KPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-------~~~~~~Wi 990 (1282)
++||||||..+-|+++|..-+..+. .++.+-+-|...- =++|+.-...|+.... ..-..+|+
T Consensus 9 yPgsGKTtfakeLak~L~~~i~~vi-------~l~kdy~~~i~~D----Eslpi~ke~yres~~ks~~rlldSalkn~~V 77 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQEIWRVI-------HLEKDYLRGILWD----ESLPILKEVYRESFLKSVERLLDSALKNYLV 77 (261)
T ss_pred CCCCCchHHHHHHHHHHHHhhhhcc-------ccchhhhhheecc----cccchHHHHHHHHHHHHHHHHHHHHhcceEE
Confidence 5789999999999999986443221 1333334444421 1234443333332211 11125799
Q ss_pred EEcCCCChhhhhhhhh
Q psy9553 991 VLDGPVDSIWIENLNS 1006 (1282)
Q Consensus 991 vfDG~vd~~WiE~mns 1006 (1282)
|+| |..++-+|--
T Consensus 78 IvD---dtNYyksmRr 90 (261)
T COG4088 78 IVD---DTNYYKSMRR 90 (261)
T ss_pred EEe---cccHHHHHHH
Confidence 999 5778877753
No 470
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.10 E-value=42 Score=40.17 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.1
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
...+.+||.||||||
T Consensus 177 ~~pkgvLL~GppGTG 191 (398)
T PTZ00454 177 DPPRGVLLYGPPGTG 191 (398)
T ss_pred CCCceEEEECCCCCC
Confidence 356889999999999
No 471
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=23.01 E-value=83 Score=35.56 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
+.+|||||++.-|..+|+.-| .+-+....|
T Consensus 9 ~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 9 YKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 347999999999999999887 443333444
No 472
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.97 E-value=9.7 Score=30.13 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=11.8
Q ss_pred ecCCCCCCCccchhc
Q psy9553 1033 EPHNIDNASPATVSR 1047 (1282)
Q Consensus 1033 Ev~dL~~asPAtvSR 1047 (1282)
|+......|++||||
T Consensus 4 dIA~~agvS~~TVSr 18 (46)
T PF00356_consen 4 DIAREAGVSKSTVSR 18 (46)
T ss_dssp HHHHHHTSSHHHHHH
T ss_pred HHHHHHCcCHHHHHH
Confidence 345567789999999
No 473
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.86 E-value=77 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.||||+.--|+.++.+.|..+-+..++|.+
T Consensus 12 GVGKTT~~~nLA~~la~~G~kVLliD~Dpq~ 42 (270)
T PRK13185 12 GIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH 42 (270)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEeccCCc
Confidence 6899999999999999988877667788863
No 474
>PRK14532 adenylate kinase; Provisional
Probab=22.86 E-value=50 Score=34.80 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||.-+.|++.+
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998865
No 475
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.85 E-value=50 Score=34.35 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||.+++|+.-+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 36 PSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 78899999999988754
No 476
>PHA02774 E1; Provisional
Probab=22.84 E-value=2.2e+02 Score=35.60 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+++|||...-.|++.|. | . .+..+|- .++-| +. .-.+.+.+|+|-.-.
T Consensus 442 PP~TGKS~fa~sL~~~L~--G-~-vi~fvN~--------------~s~Fw--------Lq-----pl~d~ki~vlDD~t~ 490 (613)
T PHA02774 442 PPDTGKSMFCMSLIKFLK--G-K-VISFVNS--------------KSHFW--------LQ-----PLADAKIALLDDATH 490 (613)
T ss_pred CCCCCHHHHHHHHHHHhC--C-C-EEEEEEC--------------ccccc--------cc-----hhccCCEEEEecCcc
Confidence 899999988777777652 1 1 1112342 34455 11 112357899998777
Q ss_pred h--hhhh-hhhhhccCCccccc---------cCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC----------
Q psy9553 998 S--IWIE-NLNSVLDDNRTLTL---------ANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS---------- 1055 (1282)
Q Consensus 998 ~--~WiE-~mnsvlDdnk~L~L---------~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~---------- 1055 (1282)
+ .|+. .|..+||-|+ +|+ -..-.+-++.|+.+.-| ..=....||.-..+|..
T Consensus 491 ~~w~y~d~~Lrn~LdG~~-v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----~~~~yL~sRi~~f~F~n~~P~d~~G~P 564 (613)
T PHA02774 491 PCWDYIDTYLRNALDGNP-VSIDCKHKAPVQIKCPPLLITSNIDVKAE-----DRYKYLHSRITVFEFPNPFPLDENGNP 564 (613)
T ss_pred hHHHHHHHHHHHHcCCCc-ceeeecccCcccccCCCEEEecCCCcccc-----hhhHHhhhhEEEEECCCCCCcCCCCCE
Confidence 7 4566 8889999872 111 11112233334444432 22346678877777652
Q ss_pred ----CCCCcHHHHHHHhc
Q psy9553 1056 ----SGLDWSPIVAAWLR 1069 (1282)
Q Consensus 1056 ----~~~~~~~~~~swl~ 1069 (1282)
++-.|++|+...=.
T Consensus 565 ~f~ltd~~WKsFF~rlw~ 582 (613)
T PHA02774 565 VFELTDANWKSFFERLWS 582 (613)
T ss_pred eeeeCchhHHHHHHHHHH
Confidence 34578888766433
No 477
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=22.81 E-value=51 Score=33.91 Aligned_cols=17 Identities=29% Similarity=0.104 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 8 ~~GSGKstia~~la~~l 24 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKL 24 (171)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57899999999998865
No 478
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.68 E-value=49 Score=34.58 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 34 PSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78899999999887643
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.68 E-value=48 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 34 ~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 34 PNGAGKTTTIRMILGI 49 (210)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7889999998888863
No 480
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=22.65 E-value=52 Score=37.03 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+++.|...+
T Consensus 88 ~tGSGKTT~l~all~~i 104 (264)
T cd01129 88 PTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCCcHHHHHHHHHhhh
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=22.60 E-value=64 Score=37.84 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+...+...+.-++++||||+|
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSG 134 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSG 134 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCC
Confidence 3444555567889999999999
No 482
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=22.60 E-value=94 Score=33.52 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
-|.||||+---|+.++.+.|..+-+...+|-+=+..-+.|
T Consensus 9 GGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~ 48 (212)
T cd02117 9 GGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLG 48 (212)
T ss_pred CcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccC
Confidence 3689999999999999998887766668888644444444
No 483
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.55 E-value=45 Score=39.41 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.7
Q ss_pred HHhcCCcEEEecCCCCC
Q psy9553 1266 IAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1266 ~~~~~~~~ll~G~~Gt~ 1282 (1282)
++..|..++|+||||+|
T Consensus 133 ~~~~g~ii~lvGptGvG 149 (374)
T PRK14722 133 LMERGGVFALMGPTGVG 149 (374)
T ss_pred cccCCcEEEEECCCCCC
Confidence 46678899999999998
No 484
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=22.52 E-value=49 Score=35.42 Aligned_cols=17 Identities=12% Similarity=-0.043 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||.+++|+.-+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 32 ESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999988643
No 485
>PLN02165 adenylate isopentenyltransferase
Probab=22.51 E-value=62 Score=37.50 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCCChhHHHHHHHHHHHh--cC-CCceeee---eccCCCCcc-------cccceecCCCCccccchHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSE--VE-EPHREMR---MNPKAITAA-------QMFGRLDVATNDWTDGIFSALWRKT 979 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~--~~-~~~~~~~---inpk~i~~~-------~LyG~~d~~t~eW~dG~~~~~~r~~ 979 (1282)
|+|||||++...|++.+.. +. ...++|. |---..+.. .|+|.+++..++++=|-|-...+.+
T Consensus 51 PTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~a~~~ 125 (334)
T PLN02165 51 ATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSLASLS 125 (334)
T ss_pred CCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHHHHHH
Confidence 8999999999999888642 11 1122221 111111222 3677788765566666554444433
No 486
>PLN02748 tRNA dimethylallyltransferase
Probab=22.49 E-value=71 Score=38.93 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=42.2
Q ss_pred CCCCChhHHHHHHHHHHHh--cC-CCceeee---eccCCCC-------cccccceecCCCCccccchHHHHHHHHhcc
Q psy9553 918 QWLTRKTTCIHTLMAALSE--VE-EPHREMR---MNPKAIT-------AAQMFGRLDVATNDWTDGIFSALWRKTLKL 982 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~--~~-~~~~~~~---inpk~i~-------~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~ 982 (1282)
|+|+|||++...|+..+.. ++ ...++|. |=---+| ...|+|.+||. .+|+=|-|-...+++..+
T Consensus 30 ptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~-e~ysv~~F~~~A~~~I~~ 106 (468)
T PLN02748 30 PTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPS-VEFTAKDFRDHAVPLIEE 106 (468)
T ss_pred CCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCC-CcCcHHHHHHHHHHHHHH
Confidence 8999999999999887641 11 1223442 2122222 24689999996 689988887777766543
No 487
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=22.42 E-value=47 Score=36.02 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+..+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 34 RNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999998887643
No 488
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=22.35 E-value=62 Score=33.60 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|.|+|||++++.+...+..-
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 79999999999888877654
No 489
>PRK14531 adenylate kinase; Provisional
Probab=22.31 E-value=58 Score=34.22 Aligned_cols=17 Identities=29% Similarity=-0.068 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||.-+.|++.+
T Consensus 10 ~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 10 PPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998876
No 490
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=22.31 E-value=93 Score=33.24 Aligned_cols=31 Identities=23% Similarity=0.055 Sum_probs=20.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|+|+||||++=-|+..+..-+..+-....+.
T Consensus 9 ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 7999999998888877765454444444443
No 491
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=22.31 E-value=49 Score=36.54 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 36 PSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 78999999988887643
No 492
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=22.28 E-value=49 Score=35.60 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 34 PSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999887643
No 493
>COG3911 Predicted ATPase [General function prediction only]
Probab=22.24 E-value=51 Score=33.11 Aligned_cols=15 Identities=33% Similarity=0.104 Sum_probs=12.0
Q ss_pred CCCChhHHHHHHHHH
Q psy9553 919 WLTRKTTCIHTLMAA 933 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a 933 (1282)
+|+||||+++.|+.|
T Consensus 18 pGaGKTtLL~aLa~~ 32 (183)
T COG3911 18 PGAGKTTLLAALARA 32 (183)
T ss_pred CCCcHHHHHHHHHHc
Confidence 579999987777765
No 494
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.24 E-value=82 Score=34.79 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 920 LTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 920 ~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
|.||||+--.|+-||.++|+++....++|.
T Consensus 12 GvG~TTltAnLA~aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLGESVLAIDLDPQ 41 (243)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeCCcH
Confidence 589999999999999999988766666664
No 495
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=22.13 E-value=48 Score=38.63 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+++.|...+.
T Consensus 168 ~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 168 GTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 799999999999887653
No 496
>KOG0964|consensus
Probab=22.03 E-value=2e+03 Score=29.07 Aligned_cols=268 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHH----HHHHhHHHHHHhhHHHHHHHH
Q psy9553 216 MTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLK----RIRDQEVDMELKIEPIEEAYN 291 (1282)
Q Consensus 216 ~~~~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~----~i~~~~~~le~~i~~i~e~~~ 291 (1282)
...++.-...+...|.. +++.++++.+.++.+...+.+.-.+...+..-.+-+. .+..+...++..+.+......
T Consensus 673 ~~~~~~~~~~l~~~L~~-~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le 751 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDE-VRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELE 751 (1200)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q ss_pred hhhh-------------------cCCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHH
Q psy9553 292 VITR-------------------YDLPVDKEDLEQVDSLRYTWQKLLARAM-------TANVLLTTMQPRFEQDLADNLA 345 (1282)
Q Consensus 292 lL~~-------------------~~~~l~~e~~~~~~~l~~~w~~l~~~~~-------~~~~~l~~~k~~f~~~L~~~~~ 345 (1282)
.+.. +.-.++.++.+.+..+...-.++...+. ...............+|...+.
T Consensus 752 ~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~ 831 (1200)
T KOG0964|consen 752 EIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVN 831 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHH----HHH
Q psy9553 346 QFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKEL----NLL 421 (1282)
Q Consensus 346 ~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el----~~~ 421 (1282)
.+..+|.++...=..............+...+.....++..+....+.......-..-..-....++.-.... ..+
T Consensus 832 ~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~ 911 (1200)
T KOG0964|consen 832 ELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKEL 911 (1200)
T ss_pred HHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHhhhc-------------cccccccHHHHHHHHHHHHHHHHcCC----ccCCCchHHHHHHHHHHH
Q psy9553 422 QKLYKLYNDVIDRVSSYYD-------------IPWGEVNIEEINNELMEFQNRCRKLP----KGLKEWPAFHALKRTIDD 484 (1282)
Q Consensus 422 ~~lW~~~~~~~~~~~~w~~-------------~~~~~ld~~~i~~~~~~~~~~~~~l~----k~l~~~~~~~~l~~~i~~ 484 (1282)
.++-..-.......+++.. ..|.+..++++...+.+....++.+. +.+.+|.-|.+=++.+..
T Consensus 912 Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~ 991 (1200)
T KOG0964|consen 912 EKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKK 991 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
No 497
>PRK14974 cell division protein FtsY; Provisional
Probab=21.97 E-value=76 Score=36.98 Aligned_cols=22 Identities=32% Similarity=0.007 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|.|+||||++..|+..+...|.
T Consensus 148 ~~GvGKTTtiakLA~~l~~~g~ 169 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKKNGF 169 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC
Confidence 7999999999999998876554
No 498
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.92 E-value=65 Score=41.73 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHHHHhcC--CcEEEecCCCCC
Q psy9553 1263 VNCIAKQE--HAVLLIGESGKL 1282 (1282)
Q Consensus 1263 ~~~~~~~~--~~~ll~G~~Gt~ 1282 (1282)
+..++..+ .+++|+||||||
T Consensus 43 L~~~i~~~~~~slLL~GPpGtG 64 (725)
T PRK13341 43 LRRAIKADRVGSLILYGPPGVG 64 (725)
T ss_pred HHHHHhcCCCceEEEECCCCCC
Confidence 33444433 489999999999
No 499
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=21.91 E-value=48 Score=37.32 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|+||||||.++.|...+..-
T Consensus 135 ~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 135 PTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp STTSSHHHHHHHHHHHCHTT
T ss_pred CCccccchHHHHHhhhcccc
Confidence 79999999999998766543
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.87 E-value=50 Score=36.24 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 34 ~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 34 PSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999998888754
Done!