Query psy9553
Match_columns 1282
No_of_seqs 340 out of 1577
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:35:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 2E-173 8E-178 1773.5 68.1 843 404-1282 17-1316(3245)
2 4akg_A Glutathione S-transfera 100.0 3E-141 1E-145 1457.6 62.7 690 545-1282 215-1279(2695)
3 4akg_A Glutathione S-transfera 95.9 0.046 1.6E-06 77.5 15.2 113 918-1057 653-781 (2695)
4 1u4q_A Spectrin alpha chain, b 94.2 8.6 0.0003 42.8 30.0 197 232-436 6-208 (322)
5 1cun_A Protein (alpha spectrin 93.5 8.2 0.00028 40.0 24.9 193 234-434 5-203 (213)
6 3fb2_A Spectrin alpha chain, b 93.3 8.3 0.00028 40.3 21.7 192 232-429 16-211 (218)
7 1s35_A Beta-I spectrin, spectr 93.3 8.9 0.0003 39.8 24.0 193 234-434 5-204 (214)
8 1u5p_A Spectrin alpha chain, b 92.8 10 0.00035 39.4 25.7 195 233-435 7-207 (216)
9 1g8p_A Magnesium-chelatase 38 92.7 0.06 2E-06 61.7 3.9 129 918-1056 53-218 (350)
10 1u4q_A Spectrin alpha chain, b 92.5 16 0.00054 40.6 29.1 195 234-436 114-314 (322)
11 3edv_A Spectrin beta chain, br 91.2 22 0.00074 39.5 27.6 197 233-437 117-319 (323)
12 3edu_A Beta-I spectrin, spectr 91.0 17 0.00056 38.0 22.1 188 234-432 6-203 (218)
13 1quu_A Human skeletal muscle a 90.4 21 0.00071 38.1 23.7 124 231-355 16-142 (250)
14 2chg_A Replication factor C sm 90.2 0.64 2.2E-05 48.6 8.5 110 918-1056 46-161 (226)
15 1wlx_A Alpha-actinin 4; three- 90.0 3 0.0001 39.5 11.7 103 228-331 11-123 (129)
16 1ofh_A ATP-dependent HSL prote 89.1 0.61 2.1E-05 52.0 7.7 123 918-1056 58-202 (310)
17 1sjj_A Actinin; 3-helix bundle 88.7 62 0.0021 41.4 27.4 103 230-332 371-476 (863)
18 4fcw_A Chaperone protein CLPB; 88.5 0.36 1.2E-05 54.0 5.2 126 918-1055 55-215 (311)
19 3pfi_A Holliday junction ATP-d 88.4 0.68 2.3E-05 52.5 7.5 113 918-1056 63-184 (338)
20 3edv_A Spectrin beta chain, br 88.2 36 0.0012 37.7 27.8 190 234-433 11-209 (323)
21 3kbt_A Beta-I spectrin, spectr 88.2 36 0.0012 37.7 23.8 191 234-432 115-312 (326)
22 1r6b_X CLPA protein; AAA+, N-t 88.0 0.65 2.2E-05 59.2 7.8 125 918-1055 496-652 (758)
23 3hjn_A DTMP kinase, thymidylat 87.5 1.4 4.9E-05 45.6 8.7 24 918-941 8-31 (197)
24 1hci_A Alpha-actinin 2; triple 87.5 51 0.0017 38.7 28.6 161 235-396 252-427 (476)
25 2chq_A Replication factor C sm 87.0 0.92 3.1E-05 50.7 7.5 114 918-1057 46-162 (319)
26 3lbx_B Beta-I spectrin, spectr 87.0 19 0.00065 36.5 16.9 97 235-331 10-108 (185)
27 3kbt_A Beta-I spectrin, spectr 86.7 43 0.0015 37.1 26.1 202 232-439 7-213 (326)
28 1iqp_A RFCS; clamp loader, ext 86.2 1.6 5.3E-05 49.0 8.8 110 918-1056 54-169 (327)
29 1a5t_A Delta prime, HOLB; zinc 86.2 1.3 4.5E-05 50.1 8.2 127 918-1070 32-178 (334)
30 2r44_A Uncharacterized protein 85.0 0.84 2.9E-05 51.6 5.8 119 918-1057 54-186 (331)
31 3syl_A Protein CBBX; photosynt 84.6 0.85 2.9E-05 50.9 5.6 110 918-1056 75-204 (309)
32 1hqc_A RUVB; extended AAA-ATPa 84.5 3.8 0.00013 45.8 11.0 114 918-1056 46-168 (324)
33 3uul_A Utrophin; spectrin repe 84.3 21 0.0007 32.9 14.4 98 233-331 6-110 (118)
34 1jbk_A CLPB protein; beta barr 84.0 0.8 2.7E-05 46.5 4.6 114 918-1056 51-185 (195)
35 1sxj_B Activator 1 37 kDa subu 83.9 4.4 0.00015 45.1 11.2 123 918-1069 50-176 (323)
36 3pxi_A Negative regulator of g 83.8 1.7 5.9E-05 55.2 8.5 118 918-1055 529-661 (758)
37 3lv8_A DTMP kinase, thymidylat 82.7 0.87 3E-05 48.7 4.3 90 918-1007 35-148 (236)
38 2odv_A Plectin 1, HD1; plakin 81.7 56 0.0019 34.4 27.0 188 230-429 12-217 (235)
39 4tmk_A Protein (thymidylate ki 81.2 0.82 2.8E-05 48.1 3.3 90 918-1007 11-126 (213)
40 1njg_A DNA polymerase III subu 80.8 1.2 4.1E-05 47.1 4.6 123 918-1055 53-184 (250)
41 3t15_A Ribulose bisphosphate c 80.8 1.2 4.1E-05 49.4 4.7 123 918-1055 44-185 (293)
42 3pxg_A Negative regulator of g 80.3 3.5 0.00012 49.0 8.8 108 918-1057 209-326 (468)
43 2qby_B CDC6 homolog 3, cell di 79.7 1.3 4.5E-05 51.0 4.8 120 918-1056 53-197 (384)
44 2plr_A DTMP kinase, probable t 79.6 0.81 2.8E-05 47.7 2.7 21 918-938 12-32 (213)
45 4eaq_A DTMP kinase, thymidylat 79.4 2 6.8E-05 45.7 5.7 22 918-940 34-55 (229)
46 1qvr_A CLPB protein; coiled co 79.3 3.3 0.00011 53.3 8.8 104 918-1032 596-706 (854)
47 2z0h_A DTMP kinase, thymidylat 79.0 1.8 6.3E-05 44.3 5.2 24 918-941 8-31 (197)
48 4edh_A DTMP kinase, thymidylat 78.9 1.3 4.4E-05 46.6 4.0 89 918-1007 14-125 (213)
49 1sxj_E Activator 1 40 kDa subu 78.7 4.3 0.00015 46.0 8.7 60 986-1056 134-193 (354)
50 3u61_B DNA polymerase accessor 78.7 2.6 9E-05 47.2 6.8 105 918-1057 56-166 (324)
51 1sxj_C Activator 1 40 kDa subu 78.2 2.3 8E-05 48.1 6.2 111 918-1056 54-169 (340)
52 3pxi_A Negative regulator of g 78.1 3.9 0.00013 51.9 8.8 108 918-1057 209-326 (758)
53 3m6a_A ATP-dependent protease 78.0 4.7 0.00016 48.9 9.1 128 918-1056 116-253 (543)
54 1u5p_A Spectrin alpha chain, b 77.9 66 0.0023 33.0 17.4 97 234-330 114-212 (216)
55 1sjj_A Actinin; 3-helix bundle 77.6 93 0.0032 39.7 21.9 153 241-394 497-664 (863)
56 2v1u_A Cell division control p 77.4 6.7 0.00023 44.8 10.0 128 918-1056 52-201 (387)
57 3jvv_A Twitching mobility prot 77.3 4.8 0.00016 45.8 8.4 109 918-1049 131-241 (356)
58 3nbx_X ATPase RAVA; AAA+ ATPas 77.3 2.6 8.8E-05 50.4 6.4 128 918-1056 49-182 (500)
59 3v9p_A DTMP kinase, thymidylat 77.1 3.5 0.00012 43.7 6.7 24 918-941 33-60 (227)
60 2p65_A Hypothetical protein PF 77.1 1.6 5.3E-05 44.1 3.9 19 918-936 51-69 (187)
61 3a4m_A L-seryl-tRNA(SEC) kinas 76.9 1.2 4E-05 48.5 3.0 81 918-1007 12-93 (260)
62 1sxj_D Activator 1 41 kDa subu 76.2 3.2 0.00011 47.0 6.6 110 918-1056 66-192 (353)
63 1hci_A Alpha-actinin 2; triple 75.3 1.3E+02 0.0045 35.1 35.9 123 231-354 133-258 (476)
64 3f9v_A Minichromosome maintena 74.2 2 6.8E-05 52.7 4.4 122 918-1055 335-475 (595)
65 4hlc_A DTMP kinase, thymidylat 72.0 4.2 0.00014 42.3 5.7 19 918-936 10-28 (205)
66 2ph1_A Nucleotide-binding prot 71.5 5.4 0.00019 43.1 6.7 32 919-950 28-59 (262)
67 3uun_A Dystrophin; triple heli 71.5 60 0.0021 29.5 14.2 98 233-331 6-110 (119)
68 1nn5_A Similar to deoxythymidy 71.1 2.9 9.9E-05 43.5 4.2 24 918-941 17-40 (215)
69 2c95_A Adenylate kinase 1; tra 70.5 2.1 7.1E-05 43.9 2.9 17 918-934 17-33 (196)
70 3lw7_A Adenylate kinase relate 70.2 1.1 3.7E-05 44.9 0.6 37 971-1009 64-100 (179)
71 1quu_A Human skeletal muscle a 68.8 54 0.0018 34.8 13.9 99 233-331 133-240 (250)
72 3k1j_A LON protease, ATP-depen 66.8 1 3.5E-05 55.6 -0.5 63 987-1049 202-276 (604)
73 3bos_A Putative DNA replicatio 66.3 5.4 0.00018 42.0 5.2 37 1246-1282 27-64 (242)
74 3q9l_A Septum site-determining 65.3 4 0.00014 43.9 4.0 41 919-959 12-52 (260)
75 1jr3_A DNA polymerase III subu 65.1 12 0.00042 42.4 8.3 136 918-1069 46-188 (373)
76 1s35_A Beta-I spectrin, spectr 64.6 1.3E+02 0.0044 30.7 17.3 99 233-331 111-211 (214)
77 3vfd_A Spastin; ATPase, microt 64.2 5.8 0.0002 45.8 5.3 120 918-1057 156-283 (389)
78 1hyq_A MIND, cell division inh 63.8 5.5 0.00019 43.0 4.7 41 919-959 12-52 (263)
79 3ghg_A Fibrinogen alpha chain; 63.2 71 0.0024 37.0 13.4 14 652-665 489-502 (562)
80 3d8b_A Fidgetin-like protein 1 63.1 12 0.00041 42.5 7.6 118 918-1056 125-251 (357)
81 1cun_A Protein (alpha spectrin 62.7 1.4E+02 0.0047 30.4 17.2 99 232-330 109-209 (213)
82 3ea0_A ATPase, para family; al 62.2 3.8 0.00013 43.6 3.0 44 919-962 14-58 (245)
83 1ly1_A Polynucleotide kinase; 62.0 2 7E-05 43.2 0.7 15 918-932 10-24 (181)
84 2w58_A DNAI, primosome compone 61.9 6.5 0.00022 40.4 4.7 12 1271-1282 55-66 (202)
85 2iak_A Bullous pemphigoid anti 61.6 1.5E+02 0.0052 30.6 16.2 99 238-340 29-129 (224)
86 2gno_A DNA polymerase III, gam 61.2 14 0.00047 41.0 7.4 121 918-1070 26-150 (305)
87 1g3q_A MIND ATPase, cell divis 60.7 7.5 0.00026 41.0 5.0 41 919-959 12-52 (237)
88 3pvs_A Replication-associated 60.4 11 0.00037 44.4 6.7 117 918-1070 58-180 (447)
89 3r6n_A Desmoplakin; spectrin r 59.2 2.6E+02 0.0089 32.5 22.8 134 262-400 128-267 (450)
90 2ewv_A Twitching motility prot 58.9 17 0.00058 41.5 7.9 81 918-1002 144-225 (372)
91 2eyu_A Twitching motility prot 58.8 19 0.00064 38.9 7.8 19 918-936 33-51 (261)
92 1fnn_A CDC6P, cell division co 57.5 16 0.00054 41.6 7.5 126 918-1055 52-192 (389)
93 3k9g_A PF-32 protein; ssgcid, 56.6 16 0.00055 39.3 6.9 32 918-950 36-67 (267)
94 1g8x_A Myosin II heavy chain f 56.5 3.7E+02 0.013 34.7 20.4 96 234-331 771-876 (1010)
95 2bjv_A PSP operon transcriptio 56.4 9.8 0.00034 41.0 5.1 123 918-1054 37-175 (265)
96 2zan_A Vacuolar protein sortin 56.2 29 0.001 40.6 9.5 120 918-1057 175-302 (444)
97 3kjh_A CO dehydrogenase/acetyl 55.6 3.1 0.0001 44.5 0.8 40 919-959 9-48 (254)
98 4dzz_A Plasmid partitioning pr 54.2 7.2 0.00025 40.0 3.4 32 919-950 11-42 (206)
99 1um8_A ATP-dependent CLP prote 53.6 8 0.00027 44.3 4.0 122 918-1054 80-228 (376)
100 3uk6_A RUVB-like 2; hexameric 53.2 22 0.00074 40.3 7.6 18 918-935 78-95 (368)
101 3c8u_A Fructokinase; YP_612366 53.0 9.8 0.00033 39.4 4.2 34 918-951 30-63 (208)
102 3h4m_A Proteasome-activating n 52.4 11 0.00036 41.2 4.6 135 894-1054 28-186 (285)
103 2oze_A ORF delta'; para, walke 51.6 9.8 0.00033 41.9 4.1 33 918-950 45-77 (298)
104 2ius_A DNA translocase FTSK; n 51.4 11 0.00038 44.9 4.7 36 918-953 175-212 (512)
105 1ltq_A Polynucleotide kinase; 50.6 6.1 0.00021 43.6 2.2 16 918-933 10-25 (301)
106 1xjc_A MOBB protein homolog; s 49.8 12 0.0004 37.5 4.0 31 918-948 12-42 (169)
107 3kl4_A SRP54, signal recogniti 49.8 62 0.0021 37.6 10.6 30 918-947 105-134 (433)
108 1np6_A Molybdopterin-guanine d 49.1 13 0.00045 37.4 4.2 32 918-949 14-45 (174)
109 2qgz_A Helicase loader, putati 48.6 13 0.00043 41.4 4.4 13 1270-1282 152-164 (308)
110 3umf_A Adenylate kinase; rossm 47.7 12 0.00041 39.2 3.8 17 918-934 37-53 (217)
111 2ze6_A Isopentenyl transferase 47.4 23 0.00077 38.0 6.1 18 918-935 9-26 (253)
112 4b4t_H 26S protease regulatory 47.3 25 0.00085 41.1 6.7 84 899-1000 225-315 (467)
113 2xj4_A MIPZ; replication, cell 47.0 5.1 0.00018 44.0 0.9 40 919-958 14-53 (286)
114 1kag_A SKI, shikimate kinase I 46.3 7.4 0.00025 38.7 1.9 18 918-935 12-29 (173)
115 3pfi_A Holliday junction ATP-d 46.2 16 0.00056 40.8 5.0 37 1246-1282 28-67 (338)
116 3ld9_A DTMP kinase, thymidylat 46.1 6.5 0.00022 41.4 1.4 38 918-955 29-67 (223)
117 2r62_A Cell division protease 45.8 62 0.0021 34.5 9.5 17 918-934 52-68 (268)
118 1ye8_A Protein THEP1, hypothet 45.7 9 0.00031 38.7 2.4 18 918-935 8-25 (178)
119 2p67_A LAO/AO transport system 45.6 17 0.00057 41.0 4.9 33 918-950 64-96 (341)
120 2qp9_X Vacuolar protein sortin 45.4 19 0.00067 40.7 5.4 118 918-1056 92-217 (355)
121 3kb2_A SPBC2 prophage-derived 45.0 9.6 0.00033 37.7 2.5 18 918-935 9-26 (173)
122 1ojl_A Transcriptional regulat 44.7 36 0.0012 37.5 7.4 123 918-1054 33-171 (304)
123 1r6b_X CLPA protein; AAA+, N-t 44.7 27 0.00092 44.1 7.2 113 918-1057 215-350 (758)
124 3uk6_A RUVB-like 2; hexameric 44.6 13 0.00046 42.1 4.0 24 1259-1282 56-82 (368)
125 1wcv_1 SOJ, segregation protei 44.5 9.9 0.00034 40.8 2.6 39 919-958 16-54 (257)
126 1nks_A Adenylate kinase; therm 44.2 13 0.00045 37.4 3.5 22 918-939 9-30 (194)
127 2iut_A DNA translocase FTSK; n 44.0 14 0.00049 44.4 4.1 35 918-952 222-258 (574)
128 3e1s_A Exodeoxyribonuclease V, 43.8 18 0.00062 43.9 5.1 78 918-1008 212-303 (574)
129 1kgd_A CASK, peripheral plasma 43.8 9 0.00031 38.6 2.1 17 918-934 13-29 (180)
130 3uie_A Adenylyl-sulfate kinase 43.4 10 0.00035 38.9 2.4 19 918-936 33-51 (200)
131 2f1r_A Molybdopterin-guanine d 42.5 9.6 0.00033 38.3 2.0 33 918-950 10-42 (171)
132 3tr0_A Guanylate kinase, GMP k 42.4 9.5 0.00033 39.1 2.0 17 918-934 15-31 (205)
133 3asz_A Uridine kinase; cytidin 42.2 11 0.00037 39.0 2.4 18 918-935 14-31 (211)
134 3a00_A Guanylate kinase, GMP k 42.0 10 0.00035 38.4 2.1 18 918-935 9-26 (186)
135 1qhx_A CPT, protein (chloramph 41.9 9 0.00031 38.3 1.7 18 918-935 11-28 (178)
136 3s84_A Apolipoprotein A-IV; fo 41.8 3.6E+02 0.012 28.9 21.5 36 322-357 207-242 (273)
137 1rz3_A Hypothetical protein rb 41.6 16 0.00055 37.5 3.6 23 918-940 30-52 (201)
138 1d2n_A N-ethylmaleimide-sensit 41.4 9.9 0.00034 41.2 2.0 14 1269-1282 63-76 (272)
139 1sxj_A Activator 1 95 kDa subu 41.2 11 0.00038 45.2 2.6 37 1246-1282 38-89 (516)
140 4eun_A Thermoresistant glucoki 40.8 12 0.0004 38.5 2.4 17 918-934 37-53 (200)
141 3dm5_A SRP54, signal recogniti 40.4 97 0.0033 36.0 10.3 31 918-948 108-138 (443)
142 3syl_A Protein CBBX; photosynt 40.4 9.2 0.00031 42.2 1.6 14 1269-1282 66-79 (309)
143 1kht_A Adenylate kinase; phosp 40.2 13 0.00043 37.5 2.5 21 918-938 11-31 (192)
144 1lvg_A Guanylate kinase, GMP k 40.0 12 0.00042 38.3 2.4 18 918-935 12-29 (198)
145 2spc_A Spectrin; cytoskeleton; 39.9 71 0.0024 28.7 7.4 73 256-328 32-104 (107)
146 3trf_A Shikimate kinase, SK; a 39.5 13 0.00044 37.4 2.4 17 918-934 13-29 (185)
147 3vaa_A Shikimate kinase, SK; s 39.3 13 0.00043 38.2 2.4 17 918-934 33-49 (199)
148 2iub_A CORA, divalent cation t 39.1 4.5E+02 0.015 29.3 20.3 79 221-304 180-259 (363)
149 3cf0_A Transitional endoplasmi 39.1 10 0.00036 41.9 1.8 16 1267-1282 46-61 (301)
150 3t61_A Gluconokinase; PSI-biol 38.8 13 0.00045 38.1 2.4 17 918-934 26-42 (202)
151 1zp6_A Hypothetical protein AT 38.7 10 0.00035 38.4 1.5 16 918-933 17-32 (191)
152 1via_A Shikimate kinase; struc 38.6 13 0.00046 37.0 2.4 18 918-935 12-29 (175)
153 2qm8_A GTPase/ATPase; G protei 38.4 34 0.0012 38.4 5.9 33 918-950 63-95 (337)
154 2yvu_A Probable adenylyl-sulfa 38.4 19 0.00067 36.2 3.6 23 918-940 21-43 (186)
155 3te6_A Regulatory protein SIR3 38.3 29 0.00098 38.6 5.2 36 918-953 53-93 (318)
156 4egw_A Magnesium transport pro 38.2 4E+02 0.014 28.4 16.1 86 221-311 156-242 (280)
157 1htw_A HI0065; nucleotide-bind 38.2 12 0.00041 37.0 1.9 29 902-934 29-57 (158)
158 1znw_A Guanylate kinase, GMP k 38.1 12 0.00042 38.5 2.1 17 918-934 28-44 (207)
159 3ec2_A DNA replication protein 38.1 14 0.00049 37.0 2.5 18 918-935 46-63 (180)
160 2orw_A Thymidine kinase; TMTK, 38.0 22 0.00076 36.0 4.0 31 986-1016 76-108 (184)
161 1u0j_A DNA replication protein 38.0 20 0.00068 38.7 3.7 25 1258-1282 88-116 (267)
162 1cke_A CK, MSSA, protein (cyti 38.0 14 0.00046 38.6 2.4 17 918-934 13-29 (227)
163 4e22_A Cytidylate kinase; P-lo 37.7 12 0.0004 40.2 1.9 17 918-934 35-51 (252)
164 1knq_A Gluconate kinase; ALFA/ 37.5 14 0.00049 36.7 2.4 17 918-934 16-32 (175)
165 3edu_A Beta-I spectrin, spectr 37.2 1.2E+02 0.004 31.2 9.7 100 233-332 112-213 (218)
166 2pbr_A DTMP kinase, thymidylat 37.1 18 0.00061 36.5 3.1 24 918-941 8-31 (195)
167 4b4t_M 26S protease regulatory 37.1 11 0.00036 44.1 1.4 14 1269-1282 214-227 (434)
168 1ofh_A ATP-dependent HSL prote 37.0 12 0.00042 41.1 1.9 15 1268-1282 48-62 (310)
169 3pdy_A Plectin; cytoskeleton, 36.6 3.5E+02 0.012 27.4 14.7 122 209-332 87-210 (210)
170 3end_A Light-independent proto 36.5 24 0.00081 38.9 4.2 33 918-950 49-81 (307)
171 3hws_A ATP-dependent CLP prote 36.5 12 0.00043 42.4 1.9 13 1270-1282 51-63 (363)
172 2rhm_A Putative kinase; P-loop 36.3 15 0.00052 37.0 2.4 17 918-934 13-29 (193)
173 3h4m_A Proteasome-activating n 36.2 11 0.00037 41.1 1.3 25 1258-1282 38-63 (285)
174 2jeo_A Uridine-cytidine kinase 36.2 15 0.00052 39.1 2.4 17 918-934 33-49 (245)
175 1z6g_A Guanylate kinase; struc 36.2 14 0.00047 38.6 2.1 17 918-934 31-47 (218)
176 2bdt_A BH3686; alpha-beta prot 36.1 14 0.00048 37.3 2.1 15 918-932 10-24 (189)
177 2lp4_A Chemotaxis protein CHEA 36.0 3.7E+02 0.013 27.8 13.2 79 231-309 9-92 (225)
178 3cm0_A Adenylate kinase; ATP-b 36.0 16 0.00053 36.8 2.4 17 918-934 12-28 (186)
179 3pe0_A Plectin; cytoskeleton, 35.5 4.5E+02 0.015 28.2 19.0 71 262-332 43-113 (283)
180 3llm_A ATP-dependent RNA helic 35.4 22 0.00077 37.4 3.6 72 918-993 84-183 (235)
181 3lbx_A Spectrin alpha chain, e 35.3 3.2E+02 0.011 26.5 15.7 98 233-330 60-158 (161)
182 2bbw_A Adenylate kinase 4, AK4 35.3 16 0.00054 38.9 2.4 18 918-935 35-52 (246)
183 3zqe_A Protein PRGI, cell inva 35.3 2.2E+02 0.0074 30.8 10.9 47 226-272 11-57 (305)
184 3b9p_A CG5977-PA, isoform A; A 34.9 13 0.00046 40.6 1.8 15 1268-1282 52-66 (297)
185 4b4t_J 26S protease regulatory 34.6 12 0.00042 42.9 1.4 16 1267-1282 179-194 (405)
186 4b4t_M 26S protease regulatory 34.5 19 0.00064 42.0 3.0 83 900-1000 198-287 (434)
187 1s96_A Guanylate kinase, GMP k 34.5 15 0.00052 38.5 2.0 18 918-935 24-41 (219)
188 2jaq_A Deoxyguanosine kinase; 34.4 17 0.00057 37.0 2.4 18 918-935 8-25 (205)
189 3hu3_A Transitional endoplasmi 34.4 21 0.00071 42.5 3.4 142 892-1055 213-371 (489)
190 1e6c_A Shikimate kinase; phosp 34.3 17 0.0006 35.8 2.4 18 918-935 10-27 (173)
191 2qz4_A Paraplegin; AAA+, SPG7, 34.2 32 0.0011 36.6 4.7 112 918-1055 47-176 (262)
192 2j41_A Guanylate kinase; GMP, 34.1 16 0.00053 37.4 2.1 17 918-934 14-30 (207)
193 2pez_A Bifunctional 3'-phospho 34.0 25 0.00087 35.0 3.6 23 918-940 13-35 (179)
194 4b4t_K 26S protease regulatory 33.8 13 0.00044 43.3 1.5 13 1270-1282 206-218 (428)
195 4b4t_K 26S protease regulatory 33.7 25 0.00085 40.9 3.9 83 900-1000 189-278 (428)
196 3tau_A Guanylate kinase, GMP k 33.6 16 0.00055 37.8 2.0 17 918-934 16-32 (208)
197 3iij_A Coilin-interacting nucl 33.6 18 0.00062 36.1 2.4 17 918-934 19-35 (180)
198 1zuh_A Shikimate kinase; alpha 33.4 18 0.00063 35.6 2.4 18 918-935 15-32 (168)
199 1qvr_A CLPB protein; coiled co 33.1 35 0.0012 43.7 5.6 115 918-1057 199-333 (854)
200 1tue_A Replication protein E1; 33.0 16 0.00056 37.7 1.9 12 1271-1282 59-70 (212)
201 3kyj_A CHEA3, putative histidi 32.9 3.3E+02 0.011 26.0 13.3 78 230-307 12-94 (144)
202 4ev6_A Magnesium transport pro 32.7 5.4E+02 0.018 28.3 20.0 86 221-311 156-242 (339)
203 3eie_A Vacuolar protein sortin 32.7 15 0.00053 40.9 1.8 15 1268-1282 49-63 (322)
204 1sxj_D Activator 1 41 kDa subu 32.6 18 0.00063 40.5 2.5 18 1265-1282 51-70 (353)
205 2pt5_A Shikimate kinase, SK; a 32.5 19 0.00066 35.3 2.4 18 918-935 8-25 (168)
206 4b4t_L 26S protease subunit RP 32.4 14 0.00048 43.1 1.4 15 1268-1282 213-227 (437)
207 1sxj_A Activator 1 95 kDa subu 32.4 69 0.0024 38.2 7.7 31 918-953 85-115 (516)
208 3aez_A Pantothenate kinase; tr 32.3 19 0.00066 39.9 2.5 20 918-937 98-117 (312)
209 2kjq_A DNAA-related protein; s 31.9 27 0.00093 33.9 3.3 19 918-936 44-62 (149)
210 3fb4_A Adenylate kinase; psych 31.3 20 0.0007 36.9 2.4 17 918-934 8-24 (216)
211 2iak_A Bullous pemphigoid anti 31.2 1.7E+02 0.0057 30.3 9.6 73 257-329 150-222 (224)
212 3tqc_A Pantothenate kinase; bi 31.2 27 0.00092 38.9 3.5 19 918-936 100-118 (321)
213 3b85_A Phosphate starvation-in 31.1 18 0.00063 37.5 2.0 16 918-933 30-45 (208)
214 1nfn_A Apolipoprotein E3; lipi 31.0 2.7E+02 0.0092 28.1 10.7 28 322-349 108-135 (191)
215 2wwf_A Thymidilate kinase, put 30.9 22 0.00075 36.5 2.6 24 918-941 18-41 (212)
216 1tev_A UMP-CMP kinase; ploop, 30.9 21 0.00072 35.9 2.4 17 918-934 11-27 (196)
217 1qf9_A UMP/CMP kinase, protein 30.8 21 0.00073 35.8 2.4 18 918-935 14-31 (194)
218 3nvo_A Zinc transport protein 30.8 4.9E+02 0.017 27.3 14.2 105 219-330 145-251 (264)
219 2qp9_X Vacuolar protein sortin 30.6 18 0.00061 41.0 2.0 13 1270-1282 84-96 (355)
220 3tif_A Uncharacterized ABC tra 30.5 16 0.00054 38.8 1.4 15 918-932 39-53 (235)
221 4b4t_L 26S protease subunit RP 30.5 33 0.0011 39.9 4.2 134 899-1055 197-351 (437)
222 2qor_A Guanylate kinase; phosp 30.5 17 0.00058 37.3 1.6 17 918-934 20-36 (204)
223 2iyv_A Shikimate kinase, SK; t 30.4 22 0.00075 35.6 2.4 18 918-935 10-27 (184)
224 3sop_A Neuronal-specific septi 30.4 22 0.00074 38.6 2.5 18 918-935 10-27 (270)
225 2bwj_A Adenylate kinase 5; pho 30.2 22 0.00075 36.0 2.4 18 918-935 20-37 (199)
226 1in4_A RUVB, holliday junction 29.9 21 0.00073 39.9 2.4 31 1027-1057 150-181 (334)
227 2onk_A Molybdate/tungstate ABC 29.8 19 0.00065 38.3 1.9 16 918-933 32-47 (240)
228 1zak_A Adenylate kinase; ATP:A 29.6 23 0.00078 36.9 2.4 18 918-935 13-30 (222)
229 1um8_A ATP-dependent CLP prote 29.5 19 0.00065 41.1 1.9 14 1269-1282 71-84 (376)
230 1a7j_A Phosphoribulokinase; tr 29.4 25 0.00084 38.6 2.7 22 918-939 13-34 (290)
231 3pvs_A Replication-associated 29.3 23 0.00079 41.5 2.6 18 1265-1282 43-62 (447)
232 1jjv_A Dephospho-COA kinase; P 29.3 18 0.00062 37.1 1.5 15 918-932 10-24 (206)
233 3r20_A Cytidylate kinase; stru 29.2 23 0.0008 37.4 2.4 17 918-934 17-33 (233)
234 2c9o_A RUVB-like 1; hexameric 29.1 31 0.001 40.6 3.7 22 1261-1282 51-75 (456)
235 4ag6_A VIRB4 ATPase, type IV s 29.1 32 0.0011 39.5 3.7 30 918-949 43-72 (392)
236 2z4s_A Chromosomal replication 29.0 36 0.0012 39.7 4.3 13 1270-1282 130-142 (440)
237 3zq6_A Putative arsenical pump 28.7 30 0.001 38.6 3.3 40 919-959 23-62 (324)
238 2cdn_A Adenylate kinase; phosp 28.6 24 0.00083 35.9 2.4 17 918-934 28-44 (201)
239 2pcj_A ABC transporter, lipopr 28.4 18 0.00061 38.0 1.3 16 918-933 38-53 (224)
240 3kta_A Chromosome segregation 28.4 21 0.00073 35.6 1.9 18 918-935 34-51 (182)
241 4b4t_I 26S protease regulatory 28.4 22 0.00076 41.1 2.1 14 1269-1282 215-228 (437)
242 3lnc_A Guanylate kinase, GMP k 28.3 17 0.00058 38.2 1.1 17 918-934 35-52 (231)
243 1qhl_A Protein (cell division 28.2 17 0.00059 38.3 1.2 18 918-935 35-52 (227)
244 2i3b_A HCR-ntpase, human cance 28.1 27 0.00092 35.6 2.6 18 918-935 9-26 (189)
245 2if2_A Dephospho-COA kinase; a 28.1 23 0.00078 36.2 2.1 15 918-932 9-23 (204)
246 3ney_A 55 kDa erythrocyte memb 28.1 23 0.00079 36.4 2.1 17 918-934 27-43 (197)
247 1ucr_A Protein DSVD; dissimila 27.9 51 0.0018 27.8 3.6 63 707-774 3-65 (78)
248 2px0_A Flagellar biosynthesis 27.8 39 0.0013 37.1 4.0 31 918-948 113-144 (296)
249 4b4t_H 26S protease regulatory 27.8 19 0.00064 42.1 1.4 15 1268-1282 241-255 (467)
250 1xwi_A SKD1 protein; VPS4B, AA 27.7 99 0.0034 34.2 7.5 120 918-1057 53-180 (322)
251 3fvq_A Fe(3+) IONS import ATP- 27.6 22 0.00074 40.3 1.9 17 918-934 38-54 (359)
252 1e4v_A Adenylate kinase; trans 27.6 26 0.00089 36.2 2.4 17 918-934 8-24 (214)
253 1aky_A Adenylate kinase; ATP:A 27.6 26 0.00088 36.4 2.4 18 918-935 12-29 (220)
254 3fb2_A Spectrin alpha chain, b 27.5 4.9E+02 0.017 26.3 12.7 89 235-323 125-215 (218)
255 3d3q_A TRNA delta(2)-isopenten 27.5 46 0.0016 37.2 4.6 18 918-935 15-32 (340)
256 1y63_A LMAJ004144AAA protein; 27.4 25 0.00087 35.3 2.3 16 918-933 18-33 (184)
257 2zan_A Vacuolar protein sortin 27.3 21 0.00072 41.9 1.8 14 1269-1282 166-179 (444)
258 1vma_A Cell division protein F 27.1 42 0.0014 37.1 4.1 24 918-941 112-135 (306)
259 1rj9_A FTSY, signal recognitio 27.0 34 0.0012 37.8 3.3 21 918-938 110-130 (304)
260 2w58_A DNAI, primosome compone 27.0 38 0.0013 34.4 3.5 23 918-940 62-84 (202)
261 1zd8_A GTP:AMP phosphotransfer 26.9 22 0.00075 37.2 1.7 17 918-934 15-31 (227)
262 3vfd_A Spastin; ATPase, microt 26.9 22 0.00075 40.8 1.9 14 1269-1282 147-160 (389)
263 1gtv_A TMK, thymidylate kinase 26.9 15 0.00051 37.8 0.4 21 918-938 8-28 (214)
264 3f9v_A Minichromosome maintena 26.7 19 0.00065 44.0 1.3 11 1272-1282 329-339 (595)
265 3a8t_A Adenylate isopentenyltr 26.6 29 0.001 38.8 2.7 18 918-935 48-65 (339)
266 3nwj_A ATSK2; P loop, shikimat 26.6 27 0.00094 37.3 2.4 18 918-935 56-73 (250)
267 3hu3_A Transitional endoplasmi 26.6 26 0.00088 41.6 2.4 16 1267-1282 235-250 (489)
268 3f31_A Spectrin alpha chain, b 26.6 4.2E+02 0.014 25.2 14.2 98 232-329 49-147 (149)
269 2vli_A Antibiotic resistance p 26.6 19 0.00064 36.0 1.0 17 918-934 13-29 (183)
270 2cbz_A Multidrug resistance-as 26.5 21 0.0007 37.9 1.4 17 918-934 39-55 (237)
271 3ake_A Cytidylate kinase; CMP 26.5 28 0.00096 35.5 2.4 18 918-935 10-27 (208)
272 3pxg_A Negative regulator of g 26.5 33 0.0011 40.4 3.3 21 1262-1282 192-213 (468)
273 1sq5_A Pantothenate kinase; P- 26.5 27 0.00092 38.6 2.4 18 918-935 88-105 (308)
274 2www_A Methylmalonic aciduria 26.4 41 0.0014 37.9 4.0 33 918-950 82-114 (349)
275 3dl0_A Adenylate kinase; phosp 26.4 23 0.00078 36.6 1.7 87 918-1009 8-101 (216)
276 1e9r_A Conjugal transfer prote 26.3 38 0.0013 39.4 3.8 31 918-950 61-91 (437)
277 3bos_A Putative DNA replicatio 26.2 40 0.0014 35.0 3.6 21 918-938 60-80 (242)
278 1b0u_A Histidine permease; ABC 26.1 21 0.00071 38.5 1.4 16 918-933 40-55 (262)
279 1z47_A CYSA, putative ABC-tran 26.1 24 0.00082 39.9 1.9 17 918-934 49-65 (355)
280 2x8a_A Nuclear valosin-contain 26.1 24 0.00082 38.3 1.9 40 895-934 22-68 (274)
281 3k1j_A LON protease, ATP-depen 26.0 29 0.001 42.4 2.8 22 1261-1282 51-72 (604)
282 3rlf_A Maltose/maltodextrin im 25.9 24 0.00082 40.3 1.9 17 918-934 37-53 (381)
283 3b9q_A Chloroplast SRP recepto 25.9 37 0.0013 37.4 3.4 21 918-938 108-128 (302)
284 1sgw_A Putative ABC transporte 25.8 22 0.00074 37.1 1.4 16 918-933 43-58 (214)
285 2xb4_A Adenylate kinase; ATP-b 25.8 29 0.00099 36.2 2.4 17 918-934 8-24 (223)
286 1g6h_A High-affinity branched- 25.7 22 0.00074 38.3 1.4 16 918-933 41-56 (257)
287 2yyz_A Sugar ABC transporter, 25.7 25 0.00084 39.9 1.9 17 918-934 37-53 (359)
288 3hws_A ATP-dependent CLP prote 25.7 17 0.00058 41.3 0.6 85 918-1016 59-161 (363)
289 1m7g_A Adenylylsulfate kinase; 25.7 31 0.0011 35.5 2.6 21 918-938 33-54 (211)
290 3gfo_A Cobalt import ATP-bindi 25.6 22 0.00074 38.7 1.4 16 918-933 42-57 (275)
291 2d2e_A SUFC protein; ABC-ATPas 25.6 25 0.00087 37.5 1.9 16 918-933 37-52 (250)
292 2it1_A 362AA long hypothetical 25.4 25 0.00085 39.9 1.9 17 918-934 37-53 (362)
293 1ji0_A ABC transporter; ATP bi 25.4 22 0.00076 37.7 1.4 16 918-933 40-55 (240)
294 2v9p_A Replication protein E1; 25.3 30 0.001 38.2 2.5 17 918-934 134-150 (305)
295 3d8b_A Fidgetin-like protein 1 25.3 24 0.00084 39.9 1.8 15 1268-1282 115-129 (357)
296 1odf_A YGR205W, hypothetical 3 25.1 31 0.0011 37.8 2.6 21 918-938 39-59 (290)
297 3e70_C DPA, signal recognition 25.1 48 0.0016 37.0 4.1 23 918-940 137-159 (328)
298 3eie_A Vacuolar protein sortin 25.1 39 0.0013 37.5 3.5 119 918-1055 59-183 (322)
299 4g1u_C Hemin import ATP-bindin 25.1 22 0.00076 38.4 1.3 16 918-933 45-60 (266)
300 1mv5_A LMRA, multidrug resista 24.9 23 0.00078 37.7 1.4 17 918-934 36-52 (243)
301 2zu0_C Probable ATP-dependent 24.9 26 0.0009 37.8 1.9 16 918-933 54-69 (267)
302 1v43_A Sugar-binding transport 24.8 26 0.00089 39.9 1.9 17 918-934 45-61 (372)
303 2pze_A Cystic fibrosis transme 24.8 23 0.00079 37.3 1.4 16 918-933 42-57 (229)
304 3be4_A Adenylate kinase; malar 24.8 31 0.0011 35.7 2.4 17 918-934 13-29 (217)
305 2ff7_A Alpha-hemolysin translo 24.8 23 0.00079 37.8 1.4 16 918-933 43-58 (247)
306 2v54_A DTMP kinase, thymidylat 24.7 22 0.00075 36.2 1.2 17 918-934 12-28 (204)
307 4gp7_A Metallophosphoesterase; 24.7 26 0.00089 34.8 1.7 13 918-930 17-29 (171)
308 1g29_1 MALK, maltose transport 24.5 27 0.00091 39.8 1.9 17 918-934 37-53 (372)
309 1f2t_A RAD50 ABC-ATPase; DNA d 24.4 34 0.0012 33.2 2.4 18 918-935 31-48 (149)
310 1gvn_B Zeta; postsegregational 24.3 27 0.00093 38.2 1.9 17 918-934 41-57 (287)
311 1zu4_A FTSY; GTPase, signal re 24.3 48 0.0017 36.8 4.0 26 918-943 113-138 (320)
312 1vpl_A ABC transporter, ATP-bi 24.3 24 0.00081 37.9 1.4 16 918-933 49-64 (256)
313 1ixz_A ATP-dependent metallopr 24.2 28 0.00094 37.1 1.9 17 918-934 57-73 (254)
314 1ukz_A Uridylate kinase; trans 24.2 27 0.00092 35.6 1.7 17 918-934 23-39 (203)
315 2olj_A Amino acid ABC transpor 24.1 24 0.00082 38.1 1.4 16 918-933 58-73 (263)
316 2grj_A Dephospho-COA kinase; T 24.1 34 0.0012 34.9 2.4 17 918-934 20-36 (192)
317 1lv7_A FTSH; alpha/beta domain 23.9 32 0.0011 36.6 2.4 29 918-951 53-81 (257)
318 4b4t_I 26S protease regulatory 23.9 40 0.0014 38.9 3.2 130 900-1055 199-352 (437)
319 3p32_A Probable GTPase RV1496/ 23.8 48 0.0016 37.4 3.9 32 918-949 87-118 (355)
320 4b4t_J 26S protease regulatory 23.8 49 0.0017 37.9 3.9 135 899-1055 164-318 (405)
321 1ex7_A Guanylate kinase; subst 23.7 31 0.0011 35.0 2.1 17 918-934 9-25 (186)
322 4a74_A DNA repair and recombin 23.7 30 0.001 35.8 2.1 17 918-934 33-49 (231)
323 1p9r_A General secretion pathw 23.5 32 0.0011 39.8 2.4 18 918-935 175-192 (418)
324 2w0m_A SSO2452; RECA, SSPF, un 23.3 47 0.0016 34.3 3.5 22 918-939 31-52 (235)
325 2ghi_A Transport protein; mult 23.3 26 0.00087 37.8 1.4 16 918-933 54-69 (260)
326 2ihy_A ABC transporter, ATP-bi 23.1 26 0.00088 38.2 1.4 16 918-933 55-70 (279)
327 2qi9_C Vitamin B12 import ATP- 22.9 26 0.0009 37.4 1.4 17 918-934 34-50 (249)
328 3ug7_A Arsenical pump-driving 22.9 36 0.0012 38.3 2.6 41 918-959 34-74 (349)
329 2ixe_A Antigen peptide transpo 22.9 26 0.0009 37.9 1.4 17 918-934 53-69 (271)
330 1vht_A Dephospho-COA kinase; s 22.7 32 0.0011 35.5 2.0 15 918-932 12-26 (218)
331 3gd7_A Fusion complex of cysti 22.7 30 0.001 39.6 1.9 17 918-934 55-71 (390)
332 1ak2_A Adenylate kinase isoenz 22.6 36 0.0012 35.7 2.4 18 918-935 24-41 (233)
333 1uf9_A TT1252 protein; P-loop, 22.5 33 0.0011 34.7 2.0 16 918-933 16-31 (203)
334 2gza_A Type IV secretion syste 22.5 28 0.00096 39.5 1.6 15 918-932 183-197 (361)
335 2nq2_C Hypothetical ABC transp 22.5 27 0.00094 37.3 1.4 17 918-934 39-55 (253)
336 2qt1_A Nicotinamide riboside k 22.4 29 0.00099 35.5 1.6 17 918-934 29-45 (207)
337 2ehv_A Hypothetical protein PH 22.4 31 0.0011 36.3 1.9 16 918-933 38-53 (251)
338 3s84_A Apolipoprotein A-IV; fo 22.4 7.3E+02 0.025 26.5 29.9 33 476-514 212-245 (273)
339 1in4_A RUVB, holliday junction 22.3 74 0.0025 35.4 5.1 12 1271-1282 52-63 (334)
340 2yz2_A Putative ABC transporte 22.2 28 0.00094 37.6 1.4 16 918-933 41-56 (266)
341 3tlx_A Adenylate kinase 2; str 22.2 37 0.0013 35.9 2.4 17 918-934 37-53 (243)
342 3gwk_C SAG1039, putative uncha 22.0 3.6E+02 0.012 23.3 8.7 64 588-670 28-91 (98)
343 3exa_A TRNA delta(2)-isopenten 21.7 52 0.0018 36.4 3.4 18 918-935 11-28 (322)
344 2pjz_A Hypothetical protein ST 21.5 29 0.00099 37.4 1.4 16 918-933 38-53 (263)
345 1yrb_A ATP(GTP)binding protein 21.4 53 0.0018 34.8 3.5 32 918-950 22-53 (262)
346 3d31_A Sulfate/molybdate ABC t 21.4 23 0.0008 39.9 0.6 16 918-933 34-49 (348)
347 1j8m_F SRP54, signal recogniti 21.2 61 0.0021 35.6 3.9 30 918-947 106-135 (297)
348 1uj2_A Uridine-cytidine kinase 21.1 35 0.0012 36.3 1.9 18 918-935 30-47 (252)
349 1ls1_A Signal recognition part 21.1 62 0.0021 35.4 4.0 31 918-948 106-136 (295)
350 2r8r_A Sensor protein; KDPD, P 21.0 67 0.0023 33.6 4.0 31 918-948 14-44 (228)
351 3tui_C Methionine import ATP-b 21.0 35 0.0012 38.7 1.9 16 918-933 62-77 (366)
352 2p5t_B PEZT; postsegregational 20.9 30 0.001 36.9 1.3 17 918-934 40-56 (253)
353 2og2_A Putative signal recogni 20.7 56 0.0019 36.9 3.6 21 918-938 165-185 (359)
354 3upu_A ATP-dependent DNA helic 20.6 58 0.002 38.2 3.8 51 884-939 23-74 (459)
355 1iy2_A ATP-dependent metallopr 20.5 36 0.0012 36.8 1.9 17 918-934 81-97 (278)
356 3cwq_A Para family chromosome 20.4 63 0.0022 33.2 3.7 31 919-950 10-40 (209)
357 2ce7_A Cell division protein F 20.2 34 0.0011 40.4 1.6 16 1267-1282 46-61 (476)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2.4e-173 Score=1773.52 Aligned_cols=843 Identities=25% Similarity=0.475 Sum_probs=707.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHcCCccCCCchHHHHHHHHHH
Q psy9553 404 PTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTID 483 (1282)
Q Consensus 404 ~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~i~ 483 (1282)
|...|..|..+.+|+..++.+|+++..|+..+++|++++|.++|++.++++++.|.++++++++.+++|+++.++++.|+
T Consensus 17 ~~~~~~~l~~~~~el~~l~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~ 96 (3245)
T 3vkg_A 17 DDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIK 96 (3245)
T ss_dssp ------------------------------CHHHHHHCCTTTCCC-------------------------CHHHHHHHHH
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence 44568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHhcCCCCchhhHHHHHHHhcCCcccCCccccHHHHHcCCccccHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9553 484 DFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNE 563 (1282)
Q Consensus 484 ~f~~~lPli~~L~~~~lk~RHW~~i~~~~g~~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~ 563 (1282)
+|+.++|+|..|+||+||+|||++|++++|.++.+ +++||++|+++++.+|.+.|++|+..|++|+.||+.|++|++.
T Consensus 97 ~f~~~lpll~~L~n~~~~~RHW~~l~~~~g~~~~~--~~~tL~~ll~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~ 174 (3245)
T 3vkg_A 97 IYLKGNAIITDLHSEAIKDRHWKILKKRLNTNWII--TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREF 174 (3245)
T ss_dssp HHHHHTHHHHHTTSTTCCHHHHHHHHHHTTCCCCT--TSCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCccccHHHHHHHHHHhCCCCCc--cCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997665 4799999999999999999999999999999999999999999
Q ss_pred hcccEEEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy9553 564 WSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVY 643 (1282)
Q Consensus 564 W~~~~f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~y 643 (1282)
|+.++|++.+|+++ ..+|++ +|||+++||||++.||+|++|||++||+++|.+|+++|+.++++|+.|+.|||+|+|
T Consensus 175 W~~~~f~~~~~~~~-~~ll~~--~dei~~~led~~~~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~y 251 (3245)
T 3vkg_A 175 WTTLELDLVNYQRK-CKLVRG--WDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVY 251 (3245)
T ss_dssp HHHCBCEEEEETTT-EEEEEC--HHHHHHHHHHHHHHHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhceEEEEEeccCC-eeEeCC--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975 566774 799999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccc-hhhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q psy9553 644 LEAVFVG-GDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMM 722 (1282)
Q Consensus 644 Le~IF~~-~dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~~Le~iqk~L~~yLe~KR~~ 722 (1282)
|||||++ +||++|||.|+++|..||+.|+++|+++.++|+|+++|..++ +.+.|+++++.|+.|||+|++|||+||..
T Consensus 252 Le~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~v~~~~~~~~-~~~~L~~~~~~Le~iqk~L~~yLE~KR~~ 330 (3245)
T 3vkg_A 252 LEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIER-IQQTMERLSDLLGKVQKALGEYLERQRSA 330 (3245)
T ss_dssp HHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCBHHHHTTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999984 699999999999999999999999999999999999998665 56679999999999999999999999999
Q ss_pred CCeeEecChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEeccccccc--ccCHHHHHHH
Q psy9553 723 FPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRA--EGSVESWLTC 800 (1282)
Q Consensus 723 FPRFyFLSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~v~~--~g~ve~WL~~ 800 (1282)
|||||||||+|||+|||+++||.+||+||+|||+||++|.|+++. ..|+||+|+|||+|+|.+||.+ .|+||.||.+
T Consensus 331 FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~~l~f~~~~-~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~ 409 (3245)
T 3vkg_A 331 FARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEK-TTIIGMSSAEGETVTFKKPISIANGPKIHEWLTM 409 (3245)
T ss_dssp SGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCCEEEECTTS-CEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHH
T ss_pred CchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhheEEecCCC-CEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998653 4688999999999999999965 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----ccchHHHHhcCCchhHHHHHHHhhHHHHHHHHHhch----hhHHHHHHHHHHH
Q psy9553 801 LLQMAQQSLHSIIRTAYTSLNDP----NFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQAR----HDKKMMSETNNRF 872 (1282)
Q Consensus 801 le~~m~~tl~~~i~~~~~~~~~~----~~~~~~wi~~~p~Qvvl~~~qi~wT~~ve~al~~~~----~~~~~~~~~~~~~ 872 (1282)
||.+|+.||+..++.|+.+|... ..+|.+|+.+||+||+++++||+||++||+||.+.+ +.+.+++.+.+++
T Consensus 410 le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~ 489 (3245)
T 3vkg_A 410 VESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTT 489 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 99999999999999999999631 246899999999999999999999999999998754 2466899999999
Q ss_pred HHHHHHHHHHHccCCCHHHHHhHHhHHHHHHHHHHHHhhh----------------------------------------
Q psy9553 873 LELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDIL---------------------------------------- 912 (1282)
Q Consensus 873 ~~~l~~l~~~~~~~l~~~~r~k~~~Li~i~vh~rDiv~~l---------------------------------------- 912 (1282)
..+|+.|+.+++++|++.+|.|+++|||++||+|||+++|
T Consensus 490 ~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~ 569 (3245)
T 3vkg_A 490 QMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANA 569 (3245)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCc
Confidence 9999999999999999999999999999999999999887
Q ss_pred -----------------------------------------CC-------------------------------------
Q psy9553 913 -----------------------------------------GP------------------------------------- 914 (1282)
Q Consensus 913 -----------------------------------------GP------------------------------------- 914 (1282)
||
T Consensus 570 ~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i 649 (3245)
T 3vkg_A 570 TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRI 649 (3245)
T ss_dssp EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH
T ss_pred eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 33
Q ss_pred --------------------------------------------------------------------------------
Q psy9553 915 -------------------------------------------------------------------------------- 914 (1282)
Q Consensus 915 -------------------------------------------------------------------------------- 914 (1282)
T Consensus 650 ~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk 729 (3245)
T 3vkg_A 650 FVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLK 729 (3245)
T ss_dssp HHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHH
T ss_pred HhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------C------
Q psy9553 915 -------------------------------------------------------------------------E------ 915 (1282)
Q Consensus 915 -------------------------------------------------------------------------e------ 915 (1282)
.
T Consensus 730 ~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~ 809 (3245)
T 3vkg_A 730 KLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLP 809 (3245)
T ss_dssp TTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC---
T ss_pred hhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhccc
Confidence 1
Q ss_pred ----------------C----C----------------------------------------------------------
Q psy9553 916 ----------------E----V---------------------------------------------------------- 917 (1282)
Q Consensus 916 ----------------n----i---------------------------------------------------------- 917 (1282)
. +
T Consensus 810 ~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~ 889 (3245)
T 3vkg_A 810 PITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTK 889 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCC
T ss_pred ccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccC
Confidence 0 0
Q ss_pred ------------------------CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCCcccccceecCCCCccccchH
Q psy9553 918 ------------------------QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF 972 (1282)
Q Consensus 918 ------------------------~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~ 972 (1282)
|+||||||||++|++||+.+ |.+++.|+|||||||++||||++||+||||+||||
T Consensus 890 ~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvl 969 (3245)
T 3vkg_A 890 QEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLF 969 (3245)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHH
T ss_pred HHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHH
Confidence 88999999999999999998 45678899999999999999999999999999999
Q ss_pred HHHHHHHhccC---CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc
Q psy9553 973 SALWRKTLKLK---PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG 1049 (1282)
Q Consensus 973 ~~~~r~~~~~~---~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg 1049 (1282)
|+++|+++++. .++++||||||||||+|||||||||||||+|||||||||+|||+|+|||||+||++||||||||||
T Consensus 970 s~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcG 1049 (3245)
T 3vkg_A 970 TATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCG 1049 (3245)
T ss_dssp HHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSE
T ss_pred HHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeee
Confidence 99999998643 345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHhccCChH-------------------------------------------------------
Q psy9553 1050 MVYMSSSGLDWSPIVAAWLRGRSAK------------------------------------------------------- 1074 (1282)
Q Consensus 1050 mvy~~~~~~~~~~~~~swl~~~~~~------------------------------------------------------- 1074 (1282)
||||+|+++||+|++.+|+.+++..
T Consensus 1050 mVy~~~~~l~~~~~~~swl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (3245)
T 3vkg_A 1050 MVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPILTSPPTTSSSSRSTTSTTSMIPAGL 1129 (3245)
T ss_dssp EEECCTTSSCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHTC----------------------------------CCHHH
T ss_pred EEEEcccccCchHHHHHHHHhCccccccchhhhhhcccccchhhhcccccccccccccccccccccccccccccccchhH
Confidence 9999999999999999999864210
Q ss_pred -----HHHHHHHHH--HhhhHHHHHHHhhccccccccchHHHHHHHHHHHhhccCCCCCCccccccccCCCCCCCCCCcc
Q psy9553 1075 -----EASVFHHLF--EESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEE 1147 (1282)
Q Consensus 1075 -----~~~~l~~l~--~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 (1282)
..+.+..+| ++|++++++|+++ +.++++++..+++.++|++|++++.... ++.
T Consensus 1130 ~~~~~~~~~l~~~~~~~~~v~~~l~~~~~-~~~i~~~~~~~~v~~l~~ll~~~~~~~~----~~~--------------- 1189 (3245)
T 3vkg_A 1130 KVQKECAAIISQYFEPGGLVHKVLEDAGQ-RPHIMDFTRLRVLNSFFSLMNRSIVNVI----EYN--------------- 1189 (3245)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHT-SCCSSCCCHHHHHHHHHHHHHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHh-cCcccCccHHHHHHHHHHHHHHHhhhhc----ccc---------------
Confidence 123466777 6888999999974 6889999999999999999999874210 000
Q ss_pred hhhhhhhhhhccCCchHHHHHHHHHHHHHHhccccCCcchhhHHHHHHHHhhcccCCCCCCCCCCCceEEEEEcC-CCCc
Q psy9553 1148 DEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVND-EGGW 1226 (1282)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~~~~~~f~fa~iW~~gg~l~~~~r~~f~~~~~~~~~~~~~~p~~~~~~~~~v~dy~~~~-~~~w 1226 (1282)
..+++.+...+....+++++|+||+||||||+++.++|.+||+|+|+... ..+|+ ++++|||||++. +|+|
T Consensus 1190 --~~~~~~~~~~~~~~~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~--~~~p~----~~~~v~Dy~~~~~~~~w 1261 (3245)
T 3vkg_A 1190 --QLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAI--TPVPA----NTIPLLDYSVSIDDANW 1261 (3245)
T ss_dssp --HHTTTSCCCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCS--SCCCC----TTSCGGGEEECTTTCSE
T ss_pred --cccccCCCCHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcC--CCCCC----CCCceEEEEEECCCCee
Confidence 00000000011123578999999999999999999999999999998764 33332 268999999996 8999
Q ss_pred cccccccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1227 EPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1227 ~~W~~~~~~~~~~~~~~~~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+|.+.+|.+.++++. .++++++|||+||+|+.|+++.++.+++|||||||||||
T Consensus 1262 ~~W~~~v~~~~~~~~~-~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtG 1316 (3245)
T 3vkg_A 1262 SLWKNKVPSVEVETHK-VASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSG 1316 (3245)
T ss_dssp EETTCCC---CCCSTT-TTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSS
T ss_pred eehhhcCCccccCCcc-CCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 9999999999887653 368999999999999999999999999999999999999
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=3.3e-141 Score=1457.60 Aligned_cols=690 Identities=22% Similarity=0.346 Sum_probs=607.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhcccEEEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHH
Q psy9553 545 ISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDL 624 (1282)
Q Consensus 545 ~~A~~E~~ie~~L~~i~~~W~~~~f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L 624 (1282)
..|++|+.||+.|++|++.|++++|++.+|++ +.++|++ +|||++.|+||++.|++|++|||+++|+++|.+|+++|
T Consensus 215 ~~AskE~~iE~~L~~i~~~W~~~~f~~~~~~~-~~~~l~~--~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L 291 (2695)
T 4akg_A 215 PPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSS-GLKLVRE--WDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKL 291 (2695)
T ss_dssp CC----CHHHHHHHHHHHHHTSCCCEEEECSS-SCEEEEC--THHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHhhceEEEEEEecC-CeEEECC--HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 35999999999999999999999999999984 6778874 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcc-cchhhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHH
Q psy9553 625 SNTNEILERWLLVQNMWVYLEAVF-VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQE 703 (1282)
Q Consensus 625 ~~~~~~l~~w~~vQ~~W~yLe~IF-~~~dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~ 703 (1282)
+.++++|+.|++|||+|+|||||| +|+||++|||.|+++|+.||+.|+++|+++.++|+|+++|..++ +.+.|+++++
T Consensus 292 ~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~-~~~~L~~~~~ 370 (2695)
T 4akg_A 292 TKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPN-FDTTLKLTID 370 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccccc-HHHHHHHHHH
Confidence 999999999999999999999999 67899999999999999999999999999999999999998766 5567999999
Q ss_pred HHHHHHHHHhHHHHhhhccCCeeEecChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEe
Q psy9553 704 QLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQ 783 (1282)
Q Consensus 704 ~Le~iqk~L~~yLe~KR~~FPRFyFLSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~ 783 (1282)
.|+.|||+|++|||+||.+|||||||||+|||+|||+++||.+||+||+|||+||++|.|++ ..|+||+|+|||+|+
T Consensus 371 ~Le~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~f~~---~~i~~m~s~egE~v~ 447 (2695)
T 4akg_A 371 SLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE---DFITGVRSVEGEVLN 447 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEEECS---SEEEEEEETTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEEecC---ceEEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999983 369999999999999
Q ss_pred ccccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHhcCCchhHHHHHHHhhHHHHHHHHHhchhh
Q psy9553 784 LERAVRAEG--SVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHD 861 (1282)
Q Consensus 784 ~~~~v~~~g--~ve~WL~~le~~m~~tl~~~i~~~~~~~~~~~~~~~~wi~~~p~Qvvl~~~qi~wT~~ve~al~~~~~~ 861 (1282)
|.+||.+.| +||.||.+||++|+.||+..++.|+.+|... ..|.+|+.+||+||+++++||+||++||+||..++
T Consensus 448 ~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~-~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~~~-- 524 (2695)
T 4akg_A 448 LNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDG-TDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTNQ-- 524 (2695)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred eCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999876 7999999999999999999999999999752 35899999999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHhHHhHHHHHHHHHHHHhhh-----------------------------
Q psy9553 862 KKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDIL----------------------------- 912 (1282)
Q Consensus 862 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~r~k~~~Li~i~vh~rDiv~~l----------------------------- 912 (1282)
...+. +.+..+++.+... ++++++..|+|+++|||++||+|||+++|
T Consensus 525 ~~~~~---~~~~~~~~~l~~~-~~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~~ 600 (2695)
T 4akg_A 525 FSKYW---KEVDMKIKGLLDK-LNKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDL 600 (2695)
T ss_dssp HHHHH---HHHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCGG
T ss_pred HHHHH---HHHHHHHHHHHHH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCcccccc
Confidence 22233 3334455555443 45789999999999999999999999998
Q ss_pred ---------------------------------------------------CC---------------------------
Q psy9553 913 ---------------------------------------------------GP--------------------------- 914 (1282)
Q Consensus 913 ---------------------------------------------------GP--------------------------- 914 (1282)
||
T Consensus 601 ~~~~v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e 680 (2695)
T 4akg_A 601 NSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD 680 (2695)
T ss_dssp GTEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS
T ss_pred ceeEEEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 33
Q ss_pred --------------------------------------------------------------------------------
Q psy9553 915 -------------------------------------------------------------------------------- 914 (1282)
Q Consensus 915 -------------------------------------------------------------------------------- 914 (1282)
T Consensus 681 ~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 681 SFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred CCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence
Q ss_pred -----CC-------------------------------------------------------------------------
Q psy9553 915 -----EE------------------------------------------------------------------------- 916 (1282)
Q Consensus 915 -----en------------------------------------------------------------------------- 916 (1282)
||
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 00
Q ss_pred --------------------------------------------------------------C-----------------
Q psy9553 917 --------------------------------------------------------------V----------------- 917 (1282)
Q Consensus 917 --------------------------------------------------------------i----------------- 917 (1282)
+
T Consensus 841 r~~~~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~ 920 (2695)
T 4akg_A 841 SEFGEGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ 920 (2695)
T ss_dssp HHSCSSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCSCCSSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ----------CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCC-
Q psy9553 918 ----------QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPG- 985 (1282)
Q Consensus 918 ----------~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~- 985 (1282)
|+||||||||++|++|++.+ |.+++.++|||||+|++||||.+|++|+||+||+|+.++|+++.+..+
T Consensus 921 ~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~ 1000 (2695)
T 4akg_A 921 KTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGT 1000 (2695)
T ss_dssp HHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSS
T ss_pred HhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccc
Confidence 88999999999999999988 556788999999999999999999999999999999999999876432
Q ss_pred ---CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHH
Q psy9553 986 ---DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSP 1062 (1282)
Q Consensus 986 ---~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~ 1062 (1282)
+++||||||||||.|||||||||||||+|||||||||+|+|+|+|||||+||++||||||||||||||+|+++||+|
T Consensus 1001 ~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmvy~~~~~l~~~~ 1080 (2695)
T 4akg_A 1001 FKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISS 1080 (2695)
T ss_dssp CSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEEECCSCSSCHHH
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeeeEEEecCCcCChHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChH--------HHHHHHHHHHhhhHH-HHHHHhh---ccccccccchHHHHHHHHHHHhhccCCCCCCccc
Q psy9553 1063 IVAAWLRGRSAK--------EASVFHHLFEESFPV-LYAWGAA---NLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTE 1130 (1282)
Q Consensus 1063 ~~~swl~~~~~~--------~~~~l~~l~~~~~~~-~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~~ll~~~~~~~~~ 1130 (1282)
++++|+.+++.. ..+.+..+|.+++++ +++++.. .+.++++++..+.+.++++++.+++......
T Consensus 1081 ~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~--- 1157 (2695)
T 4akg_A 1081 KIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLVHILGVRTFNKLETAVQLAVHLISSYRQW--- 1157 (2695)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHSSCCSSCCCHHHHHHHHHHHHHHHHHHTCGG---
T ss_pred HHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHHhh---
Confidence 999999875321 134566677777654 4666543 4557888889999999999999987543100
Q ss_pred cccccCCCCCCCCCCcchhhhhhhhhhccCCchHHHHHHHHHHHHHHhccccCCcchhhHHHHHHHHhhcccCCCCCCCC
Q psy9553 1131 AESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGD 1210 (1282)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fa~iW~~gg~l~~~~r~~f~~~~~~~~~~~~~~p~~~~~ 1210 (1282)
... ........+++++|+||++|||||+++.++|.+|++|+|+.+. ...+|
T Consensus 1158 ----~~~-------------------~~~~~~~~~~~~~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~-~~~~p----- 1208 (2695)
T 4akg_A 1158 ----FQN-------------------LDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFG-HDSQE----- 1208 (2695)
T ss_dssp ----GTS-------------------SCHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHSC-SSSCC-----
T ss_pred ----hcc-------------------CCchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-ccCCC-----
Confidence 000 0011134578999999999999999999999999999999986 33444
Q ss_pred CCCceEEEEEcC-CCCccccccccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553 1211 PQATVFDFYVND-EGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1211 ~~~~v~dy~~~~-~~~w~~W~~~~~~~~~~~~~~~~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.+++|||+++. +++|.+|.+.++++.++++. .++++++|||+||+|+.|+++.+++.++||||+||||||
T Consensus 1209 -~~~~~dy~~~~~~~~w~~W~~~v~~~~~~~~~-~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtG 1279 (2695)
T 4akg_A 1209 -LSDYSTIVIANDKLSFSSFCSEIPSVSLEAHE-VMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSG 1279 (2695)
T ss_dssp -CCSSCCCBCCSSSCCCBCCCCCCCCCCCCSGG-GSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSS
T ss_pred -CCCeeEEEEECCCCceeechhcCCCcccCccc-cCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 36999999995 78999999999999876643 268999999999999999999999999999999999999
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.87 E-value=0.046 Score=77.53 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC-CCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK-AITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG-- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk-~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG-- 994 (1282)
|+|+|||++.+.|++|+. .+. +++|-- .++... +..+++.++.. ..|++||.
T Consensus 653 paGtGKTe~vk~LA~~lg---~~~--v~~nc~e~ld~~~----------------lg~~~~g~~~~----Gaw~~~DE~n 707 (2695)
T 4akg_A 653 PAGTGKTETVKAFGQNLG---RVV--VVFNCDDSFDYQV----------------LSRLLVGITQI----GAWGCFDEFN 707 (2695)
T ss_dssp CTTSCHHHHHHHHHHTTT---CCC--EEEETTSSCCHHH----------------HHHHHHHHHHH----TCEEEEETTT
T ss_pred CCCCCcHHHHHHHHHHhC---CcE--EEEECCCCCChhH----------------hhHHHHHHHhc----CCEeeehhhh
Confidence 899999999999999874 332 333321 111111 24455555533 36999997
Q ss_pred CCChhhhhhhhhhc--------cCCccccccCCCeeecCCCCeEEEecCCCCCC-----CccchhcccccccCCCC
Q psy9553 995 PVDSIWIENLNSVL--------DDNRTLTLANGDRLSMALAVKIIFEPHNIDNA-----SPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 995 ~vd~~WiE~mnsvl--------Ddnk~L~L~ngeri~l~~~~~~~FEv~dL~~a-----sPAtvSRcgmvy~~~~~ 1057 (1282)
-+++.=...++..+ +..+.+++ .|+.|++++++.++. +.|-.|| .+|.-+||=-|+|+..+
T Consensus 708 r~~~evLs~l~~~l~~i~~al~~~~~~i~~-~g~~i~l~~~~~vfi-T~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd 781 (2695)
T 4akg_A 708 RLDEKVLSAVSANIQQIQNGLQVGKSHITL-LEEETPLSPHTAVFI-TLNPGYNGRSELPENLKKSFREFSMKSPQ 781 (2695)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEEEC-SSSEEECCTTCEEEE-EECCCSSSSCCCCHHHHTTEEEEECCCCC
T ss_pred hcChHHHHHHHHHHHHHHHHHHcCCcEEee-CCcEEecCCCceEEE-EeCCCccCcccccHHHHhheEEEEeeCCC
Confidence 44554444443223 23334444 599999999987765 4443443 34777888888887443
No 4
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=94.22 E-value=8.6 Score=42.81 Aligned_cols=197 Identities=8% Similarity=0.053 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVD 309 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~ 309 (1282)
..+...+..+...+.+....|... ..++.++...+.....+...+...+..+..+...-.-|...+..-+.+......
T Consensus 6 ~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~ 85 (322)
T 1u4q_A 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRE 85 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 345667778888888888888654 357888888888777777777777777777777666665444322333334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHHHHHHHH
Q psy9553 310 SLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREA---SDRLILFQNRFDG 386 (1282)
Q Consensus 310 ~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea---~~~l~~~~~~l~~ 386 (1282)
.+...|..+...+......|+.... + ..+...+..+..=+..... .-...+.. .++..+ +...+.++..+..
T Consensus 86 ~l~~~w~~L~~~~~~R~~~Le~~~~-l-~~f~~~~~~~~~Wl~e~e~-~~~~~~~g--~dl~~v~~ll~~h~~l~~el~~ 160 (322)
T 1u4q_A 86 TINGRFQRIKSMAAARRAKLNESHR-L-HQFFRDMDDEESWIKEKKL-LVSSEDYG--RDLTGVQNLRKKHKRLEAELAA 160 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHH-HHTCCCCC--SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHH-hccCCCcC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999888777766654322 1 1122223333332322211 11222332 234333 3444555555555
Q ss_pred HHHHHHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 387 MWRKLQTYQS-GEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVS 436 (1282)
Q Consensus 387 l~~~~~~l~~-~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~ 436 (1282)
....+..+.. ++.+..-. .+.-..+...+..+..-|..+........
T Consensus 161 ~~~~i~~l~~~g~~L~~~~---~~~~~~i~~~l~~L~~~w~~L~~~~~~R~ 208 (322)
T 1u4q_A 161 HEPAIQGVLDTGKKLSDDN---TIGKEEIQQRLAQFVDHWKELKQLAAARG 208 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 33333322 23345677777777778877666554433
No 5
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=93.48 E-value=8.2 Score=40.04 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSL 311 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l 311 (1282)
+...++.+...+.+....+... +.++..+..++.....+...+...+..+..+...-.-|..-+..-+++....+..+
T Consensus 5 f~~~~~~~~~Wl~e~e~~l~~~~~g~dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~~~l 84 (213)
T 1cun_A 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQF 84 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3455666667777766666654 46788888887777777776666666666665554444433433333434667889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHH---HHHHHHHHHHHHHHHH
Q psy9553 312 RYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPRE---ASDRLILFQNRFDGMW 388 (1282)
Q Consensus 312 ~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~e---a~~~l~~~~~~l~~l~ 388 (1282)
...|..+..........|+.... + ..+..+++.+..=+..-. ..-...+.. -+... .++....|...+....
T Consensus 85 ~~~w~~L~~~~~~R~~~Le~~~~-~-~~f~~~~~e~~~Wl~~~e-~~l~~~~~g--~~~~~v~~ll~~h~~~~~el~~~~ 159 (213)
T 1cun_A 85 VDHWKELKQLAAARGQRLEESLE-Y-QQFVANVEEEEAWINEKM-TLVASEDYG--DTLAAIQGLLKKHEAFETDFTVHK 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHH-HHHTCCCCC--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHH-HHhhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777777765321 1 223333333333333321 122222222 23333 3444455555555555
Q ss_pred HHHHHHHHh-hhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 389 RKLQTYQSG-EELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDR 434 (1282)
Q Consensus 389 ~~~~~l~~~-e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~ 434 (1282)
..+..+... +.+..-.. +.-..+...+..+..-|..+..+...
T Consensus 160 ~~i~~l~~~~~~L~~~~~---~~~~~I~~~~~~l~~~w~~l~~~~~~ 203 (213)
T 1cun_A 160 DRVNDVCANGEDLIKKNN---HHVENITAKMKGLKGKVSDLEKAAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHCC---TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 33333222 23456777777778888777665443
No 6
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=93.32 E-value=8.3 Score=40.33 Aligned_cols=192 Identities=10% Similarity=0.065 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVD 309 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~ 309 (1282)
..+...++.+...+++....+.. .|.++..+...+.....++..+..-+..+..+...-.-|-.-+.+-.++....+.
T Consensus 16 ~~F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l~ 95 (218)
T 3fb2_A 16 QRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLD 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 34555666777777777777764 3678888888888877777776665566666654443333222222344445678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHH
Q psy9553 310 SLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGL-SPREASDRLILFQNRFDGMW 388 (1282)
Q Consensus 310 ~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~-~~~ea~~~l~~~~~~l~~l~ 388 (1282)
.+...|..+..........|+.... + ..+..++..+..=+.. .+.+-...+...+. .+...+...+.|+..+....
T Consensus 96 ~L~~~w~~L~~~~~~R~~~L~q~l~-l-~~F~~d~~~~~~WL~~-~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~~~ 172 (218)
T 3fb2_A 96 ILDQERADLEKAWVQRRMMLDQCLE-L-QLFHRDCEQAENWMAA-REAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQE 172 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH-HHHCC-------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH-HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 8889999998887777766664321 1 1222222232222211 11110111111111 23344555566666666666
Q ss_pred HHHHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy9553 389 RKLQTYQS-GEELFGLPTTDYPELAQIRKELNLLQKLYKLYN 429 (1282)
Q Consensus 389 ~~~~~l~~-~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~ 429 (1282)
.++..++. ++.+..-. ...-+.+......+..-|+.+.
T Consensus 173 ~~v~~l~~~~~~L~~~~---h~~~~~I~~~~~~l~~rW~~l~ 211 (218)
T 3fb2_A 173 EKIAALQAFADQLIAAG---HYAKGDISSRRNEVLDRWRRLK 211 (218)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 66666554 33444322 2234567777777777776554
No 7
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=93.27 E-value=8.9 Score=39.84 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH-hhhhcCCCCCHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYN-VITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~-lL~~~~~~l~~e~~~~~~~ 310 (1282)
+...++.+...+.+....|.. .|.++..+...+.....++..+...+..+..+...-. ++.....+-.......+..
T Consensus 5 F~~~~~~l~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l~~ 84 (214)
T 1s35_A 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEG 84 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 345566666677777666654 4778888888888888888877777777777775444 4443322111233456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREA---SDRLILFQNRFDGM 387 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea---~~~l~~~~~~l~~l 387 (1282)
+...|..+.......+..|+.... ...+..+++.+..=+..- +.+-...+.. .++..+ ++.-+.|...+...
T Consensus 85 L~~~w~~L~~~~~~r~~~L~~~l~--l~~F~~~~~~~~~Wl~~~-E~~l~~~~~g--~~~~~v~~llkkh~~f~~~l~~~ 159 (214)
T 1s35_A 85 LDTGWDALGRMWESRSHTLAQCLG--FQEFQKDAKQAEAILSNQ-EYTLAHLEPP--DSLEAAEAGIRKFEDFLGSMENN 159 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHCCCCC--SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHhcccCC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999888887777764321 122333333333333221 1111222222 234433 34445556666666
Q ss_pred HHHHHHHHHh-hhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 388 WRKLQTYQSG-EELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDR 434 (1282)
Q Consensus 388 ~~~~~~l~~~-e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~ 434 (1282)
..++..+... +++..-. .+.-+.+......+..-|..+......
T Consensus 160 ~~~i~~l~~~a~~L~~~~---h~~~~~I~~~~~~l~~rw~~l~~~~~~ 204 (214)
T 1s35_A 160 RDKVLSPVDSGNKLVAEG---NLYSDKIKEKVQLIEDRHRKNNEKAQE 204 (214)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665543 3333322 223455667777777777766655443
No 8
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=92.83 E-value=10 Score=39.39 Aligned_cols=195 Identities=9% Similarity=0.069 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
.+...+..+...+++....|... +.++..+...+.....+...+...+..+..+...-.-|..-+..-+++....+..
T Consensus 7 ~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 86 (216)
T 1u5p_A 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRET 86 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34556677777777777777664 5688888888888887777777777777777665555543333334444555788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREA---SDRLILFQNRFDGM 387 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea---~~~l~~~~~~l~~l 387 (1282)
+...|..+..........|+.... ...+..+++.+..=+..-. ......+. +.++..+ ++..+.|+..+...
T Consensus 87 l~~~w~~L~~~~~~R~~~Le~~~~--l~qf~~~~~~~~~Wl~e~e-~~~~~~~~--g~dl~~v~~ll~kh~~~~~el~~~ 161 (216)
T 1u5p_A 87 INGRFQRIKSMAAARRAKLNESHR--LHQFFRDMDDEESWIKEKK-LLVSSEDY--GRDLTGVQNLRKKHKRLEAELAAH 161 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHTCCCC--CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHH-HHhcCccc--CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999888777777754321 1122222333333222211 12223333 2244443 34444555556655
Q ss_pred HHHHHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 388 WRKLQTYQS-GEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRV 435 (1282)
Q Consensus 388 ~~~~~~l~~-~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~ 435 (1282)
...+..+.. ++.+..-... .-..+...+..+..-|..+.......
T Consensus 162 ~~~i~~l~~~g~~L~~~~~~---~~~~i~~~~~~l~~~W~~L~~~~~~R 207 (216)
T 1u5p_A 162 EPAIQGVLDTGKKLSDDNTI---GKEEIQQRLAQFVDHWKELKQLAAAR 207 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCSS---CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555543 3334332222 23467777777777887766654443
No 9
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.66 E-value=0.06 Score=61.70 Aligned_cols=129 Identities=18% Similarity=0.285 Sum_probs=77.8
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCcee-----------------------eeeccCCCCcccccceecCC------C
Q psy9553 918 QWLTRKTTCIHTLMAALSEV----EEPHRE-----------------------MRMNPKAITAAQMFGRLDVA------T 964 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~----~~~~~~-----------------------~~inpk~i~~~~LyG~~d~~------t 964 (1282)
|+|+|||++.+.+++.+... +.+... ++--|...+..+|+|..+.. .
T Consensus 53 ~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGE 132 (350)
T ss_dssp CGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCG
T ss_pred CCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCc
Confidence 79999999999998876431 011100 11124455566777775421 1
Q ss_pred CccccchHHHHHHHHhccCCCCceEEEEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-CCC
Q psy9553 965 NDWTDGIFSALWRKTLKLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-NAS 1041 (1282)
Q Consensus 965 ~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-~as 1041 (1282)
..+..|.+... ....+++|- .+++.=.+.|..+|++.....-..|.....+.++.++.=..... ...
T Consensus 133 ~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~ 202 (350)
T 1g8p_A 133 KAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLR 202 (350)
T ss_dssp GGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCC
T ss_pred eeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCC
Confidence 23445544321 246899996 22333344555666666544555677788888888888554322 567
Q ss_pred ccchhcccc-cccCCC
Q psy9553 1042 PATVSRNGM-VYMSSS 1056 (1282)
Q Consensus 1042 PAtvSRcgm-vy~~~~ 1056 (1282)
||..|||++ +.+.+-
T Consensus 203 ~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 203 PQLLDRFGLSVEVLSP 218 (350)
T ss_dssp HHHHTTCSEEEECCCC
T ss_pred HHHHhhcceEEEcCCC
Confidence 999999998 777753
No 10
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=92.47 E-value=16 Score=40.62 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSL 311 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l 311 (1282)
+...+..+...+++....+... +.++.++...+.....+...+...+..+..+...-.-|...+..-++.....+..+
T Consensus 114 f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L 193 (322)
T 1u4q_A 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQF 193 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3445566666666665555543 35788888888888888777777777777777766666655544334444567889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHHHHHHHHHH
Q psy9553 312 RYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREA---SDRLILFQNRFDGMW 388 (1282)
Q Consensus 312 ~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea---~~~l~~~~~~l~~l~ 388 (1282)
...|..+...+......|+.... ...+..+++.+..=+..-.... ...+. +.+...+ +...+.|+..+....
T Consensus 194 ~~~w~~L~~~~~~R~~~L~~~~~--~~qf~~~~~~~~~Wl~~~e~~l-~~~~~--g~~~~~~~~ll~~h~~~~~el~~~~ 268 (322)
T 1u4q_A 194 VDHWKELKQLAAARGQRLEESLE--YQQFVANVEEEEAWINEKMTLV-ASEDY--GDTLAAIQGLLKKHEAFETDFTVHK 268 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-TCCCC--TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh-cCCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777765322 1122233333332222221111 22232 2334333 444555555565555
Q ss_pred HHHHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 389 RKLQTYQS-GEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVS 436 (1282)
Q Consensus 389 ~~~~~l~~-~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~ 436 (1282)
..++.+.. ++.+..-..+ .-..+...+..+..-|.-+..+.....
T Consensus 269 ~~v~~l~~~~~~L~~~~~~---~~~~i~~~~~~l~~rw~~l~~~~~~R~ 314 (322)
T 1u4q_A 269 DRVNDVCANGEDLIKKNNH---HVENITAKMKGLKGKVSDLEKAAAQRK 314 (322)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 3344443222 235677777777778877766654443
No 11
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=91.16 E-value=22 Score=39.53 Aligned_cols=197 Identities=11% Similarity=0.121 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhh-hhcCCCCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRTI-TDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVI-TRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~p-~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL-~~~~~~l~~e~~~~~~~ 310 (1282)
.+...+..+...+.+....|..++ .++..+...+.....+...+...+..+..+...-.-| ..+...-+......+..
T Consensus 117 ~f~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~ 196 (323)
T 3edv_A 117 KFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENE 196 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 355667777777777766665432 4677777777777777777777777777776554444 33321111223345678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHH---HHHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPRE---ASDRLILFQNRFDGM 387 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~e---a~~~l~~~~~~l~~l 387 (1282)
+...|..+...+......|+.... + ..+...+..|..=+.......... +. +.++.. .+...+.++..++..
T Consensus 197 l~~~W~~l~~~~~~r~~~L~~~~~-~-~~F~~~~~~l~~Wl~~~~~~l~~~-~~--~~d~~~~e~ll~~h~~l~~ei~~~ 271 (323)
T 3edv_A 197 VLEAWKSLLDACESRRVRLVDTGD-K-FRFFSMVRDLMLWMEDVIRQIEAQ-EK--PRDVSSVELLMNNHQGIKAEIDAR 271 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHTC-CC--CCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHhCC-cC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888877777765332 1 123333344433333333333322 22 223333 344555566666666
Q ss_pred HHHHHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 388 WRKLQTYQS-GEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSS 437 (1282)
Q Consensus 388 ~~~~~~l~~-~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~ 437 (1282)
...+..+.. ++.++.-.... -..+...+..+..=|..+...+.....
T Consensus 272 ~~~~~~l~~~g~~Ll~~~~~~---~~~i~~~l~~L~~~w~~l~~~w~~R~~ 319 (323)
T 3edv_A 272 NDSFTTCIELGKSLLARKHYA---SEEIKEKLLQLTEKRKEMIDKWEDRWE 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554 44555443322 256777777777777766655444433
No 12
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=91.04 E-value=17 Score=37.97 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHH-HHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVD-MELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~-le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
+...++.+...+.+....+... +.+++++................ -+..+..+...-.-|..-+.+-++........
T Consensus 6 f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~ 85 (218)
T 3edu_A 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDG 85 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4456666777777766666543 46888888888887777766655 46667777766665555454444455566778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----h-cCCCCCCC-CHHHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYR----T-SGPMMPGL-SPREASDRLILFQNRF 384 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~----~-~~p~~~~~-~~~ea~~~l~~~~~~l 384 (1282)
+...|..+...+......|.... .+..|..++..+..-.. . ..|...+. .+..-......++..+
T Consensus 86 l~~~W~~L~~~~~~R~~~L~~a~---------~~~~F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL 156 (218)
T 3edu_A 86 LNEMWADLLELIDTRMQLLAASY---------DLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFEREL 156 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 88999999988877666665421 12223333333321111 1 12221111 1111123345556666
Q ss_pred HHHHHHHHHHHHhh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 385 DGMWRKLQTYQSGE-ELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVI 432 (1282)
Q Consensus 385 ~~l~~~~~~l~~~e-~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~ 432 (1282)
.....++..+.... .+....+ .+.-..+...+..+..-|.......
T Consensus 157 ~~~~~~v~~l~~~a~~L~~~~~--~~~a~~i~~~~~~l~~~W~~L~~~~ 203 (218)
T 3edu_A 157 HLLGVQVQQFQDVATRLQTAYA--GEKAEAIQNKEQEVSAAWQALLDAC 203 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665533 3332211 1245677777777777887665543
No 13
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=90.44 E-value=21 Score=38.12 Aligned_cols=124 Identities=10% Similarity=0.153 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHH
Q psy9553 231 RKKYHREMDYVYAVMNEMDRKLDRT---ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQ 307 (1282)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~L~~~---p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~ 307 (1282)
...+...+..+...+.+....+... ..+++++..++.....+...+...+..+..+...-.-|..-++.-.+.-...
T Consensus 16 ~~~F~~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r 95 (250)
T 1quu_A 16 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDR 95 (250)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 5667777888888888887777743 3588888888888888888888888888888777666655454333344456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 308 VDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYC 355 (1282)
Q Consensus 308 ~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~ 355 (1282)
...+...|..+...+......|......+ +.+..-...|..++..+.
T Consensus 96 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~-~~~d~l~~qF~~~a~~~~ 142 (250)
T 1quu_A 96 CQKICDQWDRLGTLTQKRREALERMEKLL-ETIDQLHLEFAKRAAPFN 142 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence 77899999999998888877776543222 222333335555555543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.21 E-value=0.64 Score=48.59 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=64.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc---CCCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL---KPGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~---~~~~~~WivfDG 994 (1282)
|.|+|||++.+.+++.+..-+.....+.+++... .-. +.+...++..... ....+..||+|.
T Consensus 46 ~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~vliiDe 110 (226)
T 2chg_A 46 PPGTGKTATAIALARDLFGENWRDNFIEMNASDE--------------RGI-DVVRHKIKEFARTAPIGGAPFKIIFLDE 110 (226)
T ss_dssp STTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT--------------TCH-HHHHHHHHHHHTSCCSTTCSCEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHhccccccceEEeccccc--------------cCh-HHHHHHHHHHhcccCCCccCceEEEEeC
Confidence 7999999999999988754332233333443211 001 1222333333322 124567899996
Q ss_pred CCCh---hhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 995 PVDS---IWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 995 ~vd~---~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+|. .-.+.+..++++. ++++.+++=+.......|+..+||..+.+.|-
T Consensus 111 -~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 111 -ADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp -GGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred -hhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 332 3334444555431 34567777666666678899999998888753
No 15
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=90.05 E-value=3 Score=39.47 Aligned_cols=103 Identities=12% Similarity=0.168 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccC--CCHHHHHHHHHHHHHHHHhHHHHHHhhHHH----HHHHHhhhhcCCC--
Q psy9553 228 FLLRKKYHREMDYVYAVMNEMDRKLDRTI--TDLDDVRMIMELLKRIRDQEVDMELKIEPI----EEAYNVITRYDLP-- 299 (1282)
Q Consensus 228 ~~L~~~~~~~~~~l~~~~~~~~~~L~~~p--~~leel~e~~~~i~~i~~~~~~le~~i~~i----~e~~~lL~~~~~~-- 299 (1282)
+.|.-.+.++...+.+.++.+.+.|..+. .+++++..++......+...+.-+.+++.| .+.-.+...|++.
T Consensus 11 d~L~leFAKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~ 90 (129)
T 1wlx_A 11 DQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLS 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 34455567778889999999999998653 589999999999999999988888888888 6667777778751
Q ss_pred -C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9553 300 -V-DKEDLEQVDSLRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 300 -l-~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
. |...+ ....+...|..+...+.+.+..|++
T Consensus 91 ~~npYT~i-t~~~l~~~W~~l~~li~~Rd~~Lq~ 123 (129)
T 1wlx_A 91 GSNPYTTV-TPQIINSKWEKVQQLVPKRDHALLE 123 (129)
T ss_dssp SSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 1456778899999888877766653
No 16
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.08 E-value=0.61 Score=51.96 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=66.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc--CCCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL--KPGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~--~~~~~~WivfDG~ 995 (1282)
|+|+|||++.+.+++.+. ...+.+|...++.....|. . ..+.+..++...... ......-|++|-
T Consensus 58 ~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~vl~iDE- 124 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGYVGK---E----VDSIIRDLTDSAGGAIDAVEQNGIVFIDE- 124 (310)
T ss_dssp CTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSCCSGGG---S----TTHHHHHHHHTTTTCHHHHHHHCEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccCCccCc---c----HHHHHHHHHHHhhHHHhhccCCCEEEEEC-
Confidence 799999999999998872 2344566555443222221 1 122333333221000 001245788985
Q ss_pred CChhh---------------hhhhhhhccCCccccccCCCeeecCCCCeEEEe----cCCCCCCCccchhcccc-cccCC
Q psy9553 996 VDSIW---------------IENLNSVLDDNRTLTLANGDRLSMALAVKIIFE----PHNIDNASPATVSRNGM-VYMSS 1055 (1282)
Q Consensus 996 vd~~W---------------iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FE----v~dL~~asPAtvSRcgm-vy~~~ 1055 (1282)
+|..- ...|..+|++... ...+| ..-++++.+|+= ..+.....|+..|||++ |.|.|
T Consensus 125 i~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~-~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~ 201 (310)
T 1ofh_A 125 IDKICKKGEYSGADVSREGVQRDLLPLVEGSTV-STKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 201 (310)
T ss_dssp GGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE-EETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCC
T ss_pred hhhcCccccccccchhHHHHHHHHHHHhcCCeE-ecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCC
Confidence 54433 3334455665433 23344 223456666654 44556778999999986 77775
Q ss_pred C
Q psy9553 1056 S 1056 (1282)
Q Consensus 1056 ~ 1056 (1282)
-
T Consensus 202 ~ 202 (310)
T 1ofh_A 202 L 202 (310)
T ss_dssp C
T ss_pred c
Confidence 3
No 17
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=88.74 E-value=62 Score=41.39 Aligned_cols=103 Identities=12% Similarity=0.155 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC--C-CHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHH
Q psy9553 230 LRKKYHREMDYVYAVMNEMDRKLDRTI--T-DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLE 306 (1282)
Q Consensus 230 L~~~~~~~~~~l~~~~~~~~~~L~~~p--~-~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~ 306 (1282)
+...+...+..+...+.+....|.... . +++++...+.....+...+...+..+..+...-.-|...+..-.++-..
T Consensus 371 l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~ 450 (863)
T 1sjj_A 371 LAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNA 450 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 446677888888888888888887642 2 7888888888877777777777777777777766666555443444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9553 307 QVDSLRYTWQKLLARAMTANVLLTTM 332 (1282)
Q Consensus 307 ~~~~l~~~w~~l~~~~~~~~~~l~~~ 332 (1282)
....+...|..+...+......|+..
T Consensus 451 ~~~~l~~~W~~L~~~~~~R~~~L~~~ 476 (863)
T 1sjj_A 451 RCQKICDQWDNLGALTQKRREALERT 476 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998888777777654
No 18
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.47 E-value=0.36 Score=54.05 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCC----cccccceecCCCCcccc-chHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAIT----AAQMFGRLDVATNDWTD-GIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~----~~~LyG~~d~~t~eW~d-G~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.+++.+..-+ ...+.+|...++ ..+++|.... ...+.. |.++..++.. ....+++
T Consensus 55 ~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~------~~~vl~l 125 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEAVRRR------PYSVILF 125 (311)
T ss_dssp CSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTTHHHHHHCCCTT-STTTTTCCHHHHHHHHC------SSEEEEE
T ss_pred CCCcCHHHHHHHHHHHHcCCC--cceEEeecccccccccHHHhcCCCCc-cccccccchHHHHHHhC------CCeEEEE
Confidence 799999999999999875422 233445554443 3456775432 223443 6666666542 1358999
Q ss_pred cCCCCh---hhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC--------------------------CCCCCcc
Q psy9553 993 DGPVDS---IWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN--------------------------IDNASPA 1043 (1282)
Q Consensus 993 DG~vd~---~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d--------------------------L~~asPA 1043 (1282)
|- +|. .-...|-.+|++.. ++-..|..+.+++ +.+|+=+.. ...-.|+
T Consensus 126 DE-i~~l~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~-~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 202 (311)
T 4fcw_A 126 DA-IEKAHPDVFNILLQMLDDGR-LTDSHGRTVDFRN-TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 202 (311)
T ss_dssp ET-GGGSCHHHHHHHHHHHHHSE-EECTTSCEEECTT-EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHH
T ss_pred eC-hhhcCHHHHHHHHHHHhcCE-EEcCCCCEEECCC-cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHH
Confidence 96 443 33334445555543 3445566666543 336665443 2245788
Q ss_pred chhccc-ccccCC
Q psy9553 1044 TVSRNG-MVYMSS 1055 (1282)
Q Consensus 1044 tvSRcg-mvy~~~ 1055 (1282)
-.+||+ ++.+.|
T Consensus 203 l~~R~~~~~~~~p 215 (311)
T 4fcw_A 203 FLNRLDEIVVFRP 215 (311)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHhcCCeEEEeCC
Confidence 889995 455554
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.44 E-value=0.68 Score=52.53 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|+|+|||++.+.+++.+ +.+ .+.+|.-+++ ..|-+...++. .....-+++|- .
T Consensus 63 ~~GtGKT~la~~ia~~~---~~~--~~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~vl~lDEi~~ 117 (338)
T 3pfi_A 63 PAGLGKTTLANIISYEM---SAN--IKTTAAPMIE---------------KSGDLAAILTN-----LSEGDILFIDEIHR 117 (338)
T ss_dssp STTSSHHHHHHHHHHHT---TCC--EEEEEGGGCC---------------SHHHHHHHHHT-----CCTTCEEEEETGGG
T ss_pred cCCCCHHHHHHHHHHHh---CCC--eEEecchhcc---------------chhHHHHHHHh-----ccCCCEEEEechhh
Confidence 79999999999887654 322 3334443332 22334444433 22346889995 3
Q ss_pred CChhhhhhhhhhccCCccccccCC------CeeecCCCCeEEEecCCCCCCCccchhcccc-cccCCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLTLANG------DRLSMALAVKIIFEPHNIDNASPATVSRNGM-VYMSSS 1056 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~L~ng------eri~l~~~~~~~FEv~dL~~asPAtvSRcgm-vy~~~~ 1056 (1282)
+.+.+.+.|..+|++.+...+..+ -++.+| .+.+|.=+.......|+..+||+. +.+.+-
T Consensus 118 l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 118 LSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 446788888888988775443222 234444 689999998888899999999964 556643
No 20
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=88.16 E-value=36 Score=37.71 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHH-HHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVD-MELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~-le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
+...+..+...+.+....+... +.+++++.........+...... -+..+..+...-.-|..-+.+-.+........
T Consensus 11 f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~ 90 (323)
T 3edv_A 11 LNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDG 90 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556666777777666556543 56888988888888877776665 35677777766665555443333344455678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHH---HHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQ--PRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPR---EASDRLILFQNRFD 385 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k--~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~---ea~~~l~~~~~~l~ 385 (1282)
+...|..+...+......|.... .+|.. ++..+..-+..-.... ..+. +.++. ......+.|+..+.
T Consensus 91 l~~~W~~L~~~~~~R~~~L~~a~~~~~f~~----~~~e~~~Wl~~k~~~l--~~~~--~~d~~~v~~l~~~h~~~~~~l~ 162 (323)
T 3edv_A 91 LNEAWADLLELIDTRTQILAASYELHKFYH----DAKEIFGRIQDKHKKL--PEEL--GRDQNTVETLQRMHTTFEHDIQ 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTC--CCCC--CSSHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc--cccc--ccChHHHHHHHHHHHHHHHHHH
Confidence 88999999988877666665422 12322 2233332222211111 1222 22332 22344455566666
Q ss_pred HHHHHHHHHHHhh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 386 GMWRKLQTYQSGE-ELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVID 433 (1282)
Q Consensus 386 ~l~~~~~~l~~~e-~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~ 433 (1282)
.....++.++... .+.... .-+.-..+...+..+..-|..+.....
T Consensus 163 ~~~~~v~~l~~~a~~L~~~~--~~~~~~~i~~~~~~l~~~W~~l~~~~~ 209 (323)
T 3edv_A 163 ALGTQVRQLQEDAARLQAAY--AGDKADDIQKRENEVLEAWKSLLDACE 209 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655433 332211 112345677777777788877665443
No 21
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=88.16 E-value=36 Score=37.73 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDM-ELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~l-e~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
+...+..+...+.+....+... +.+++++................. +..+..+.....-|..-+.+-++........
T Consensus 115 f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 194 (326)
T 3kbt_A 115 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDG 194 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666777777665555443 467888877777777776666553 5566677766665544443333444456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLLTTMQ--PRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGL-SPREASDRLILFQNRFDGM 387 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~k--~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~-~~~ea~~~l~~~~~~l~~l 387 (1282)
+...|..+...+......|.... ..|.. +++.+..-+..-.... ..+...+. .....+...+.++..+...
T Consensus 195 l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~----~~~e~~~Wl~ek~~~L--~~~~~~d~~~~~~ll~~~~~~e~~l~~~ 268 (326)
T 3kbt_A 195 LNEMWADLLELIDTRMQLLAASYDLHRYFY----TGAEILGLIDEKHREL--PEDVGLDASTAESFHRVHTAFERDVHLL 268 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-----------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhC--cccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988887777766432 12222 2222222222211111 11221111 2223344455555666666
Q ss_pred HHHHHHHHHhh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 388 WRKLQTYQSGE-ELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVI 432 (1282)
Q Consensus 388 ~~~~~~l~~~e-~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~ 432 (1282)
+.+++.+.... .+... ..-+.-..+...+..+..-|..+....
T Consensus 269 ~~~v~~l~~~a~~L~~~--~~~~~~~~i~~~~~~l~~~W~~L~~~~ 312 (326)
T 3kbt_A 269 GVQVQQFQDVATRLQTA--YAGEKAEAIQNKEQEVSAAWQALLDAC 312 (326)
T ss_dssp HHHHHHHHHHHHHHHHH--CCTHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH--CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655432 22221 111245677777877777777665443
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.03 E-value=0.65 Score=59.20 Aligned_cols=125 Identities=19% Similarity=0.175 Sum_probs=77.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC----CCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA----ITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~----i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||++.+.|++.+ + ...+.+|.-. .+..+|+|.-..-++.=..|.++..+|+. ....++||
T Consensus 496 ~~GtGKT~la~~la~~l---~--~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~------~~~vl~lD 564 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKAL---G--IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH------PHAVLLLD 564 (758)
T ss_dssp STTSSHHHHHHHHHHHH---T--CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC------SSEEEEEE
T ss_pred CCCCcHHHHHHHHHHHh---c--CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhC------CCcEEEEe
Confidence 89999999999999987 2 2344455433 34567887531100000135566666652 25789999
Q ss_pred C--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-------------------------CCCccchh
Q psy9553 994 G--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-------------------------NASPATVS 1046 (1282)
Q Consensus 994 G--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-------------------------~asPAtvS 1046 (1282)
- -.++.-.+.|..+||+.+ ++-..|..+.+ .++.+|+=...-. .-+|+..+
T Consensus 565 Ei~~~~~~~~~~Ll~~le~~~-~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 642 (758)
T 1r6b_X 565 EIEKAHPDVFNILLQVMDNGT-LTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN 642 (758)
T ss_dssp TGGGSCHHHHHHHHHHHHHSE-EEETTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT
T ss_pred CccccCHHHHHHHHHHhcCcE-EEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh
Confidence 6 344556667778888754 55567777777 5666776443211 45788888
Q ss_pred ccc-ccccCC
Q psy9553 1047 RNG-MVYMSS 1055 (1282)
Q Consensus 1047 Rcg-mvy~~~ 1055 (1282)
||+ +|.|.|
T Consensus 643 R~~~~i~~~~ 652 (758)
T 1r6b_X 643 RLDNIIWFDH 652 (758)
T ss_dssp TCSEEEECCC
T ss_pred hCCcceeeCC
Confidence 884 555654
No 23
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.54 E-value=1.4 Score=45.62 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=20.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
+-||||||..+.|++.|...|.++
T Consensus 8 ~DGsGKsTq~~~L~~~L~~~g~~v 31 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcE
Confidence 357999999999999999877654
No 24
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=87.48 E-value=51 Score=38.75 Aligned_cols=161 Identities=11% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHH----HHHHhhhhcCCC---CCHHHH
Q psy9553 235 HREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIE----EAYNVITRYDLP---VDKEDL 305 (1282)
Q Consensus 235 ~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~----e~~~lL~~~~~~---l~~e~~ 305 (1282)
...+..+...+++....|... +.+++++..++.....+...+...+..+..+. ....++..+.+. -++...
T Consensus 252 ~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~ 331 (476)
T 1hci_A 252 AKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYST 331 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchh
Confidence 344455566666666666553 46788888888888777777777776666653 334555555542 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q psy9553 306 EQVDSLRYTWQKLLARAMTANVLLTTMQPRF------EQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLIL 379 (1282)
Q Consensus 306 ~~~~~l~~~w~~l~~~~~~~~~~l~~~k~~f------~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~ 379 (1282)
..+..+...|..+...+......|+.....+ ...+....+.+..=+..-...... .++....+..+.++.++.
T Consensus 332 ~~~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~-~~~~~~~~le~~l~~~~~ 410 (476)
T 1hci_A 332 VTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIAR-SSIQITGALEDQMNQLKQ 410 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCTTTTSTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCCCCHHHHHHHHHH
Confidence 3467788999999988888777777644332 123333444443333332222222 122222345666777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9553 380 FQNRFDGMWRKLQTYQS 396 (1282)
Q Consensus 380 ~~~~l~~l~~~~~~l~~ 396 (1282)
+...+.........+..
T Consensus 411 ~~~el~~~~~~~~~l~~ 427 (476)
T 1hci_A 411 YEHNIINYKNNIDKLEG 427 (476)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 77766666666666543
No 25
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.04 E-value=0.92 Score=50.70 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc---CCCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL---KPGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~---~~~~~~WivfDG 994 (1282)
|.|+|||++.+.+++++..-+.......+|+.... | ... +...++..... ..+.++-||+|.
T Consensus 46 ~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~-----~~~-----~~~~~~~~~~~~~~~~~~~~vliiDe 110 (319)
T 2chq_A 46 PPGTGKTATAIALARDLFGENWRDNFIEMNASDER-----G-----IDV-----VRHKIKEFARTAPIGGAPFKIIFLDE 110 (319)
T ss_dssp SSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT-----C-----TTT-----SSHHHHHHHHSCCSSSCCCEEEEEET
T ss_pred cCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc-----C-----hHH-----HHHHHHHHHhcCCCCCCCceEEEEeC
Confidence 78999999999999987432111223345543311 1 011 11223333211 124578899996
Q ss_pred CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC
Q psy9553 995 PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 995 ~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~ 1057 (1282)
+|..=-+..|.+ +.+-.. .++++.+|+-+.+.....|+-.|||..|.+.|-.
T Consensus 111 -~~~l~~~~~~~L------~~~le~----~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 111 -ADALTADAQAAL------RRTMEM----YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp -GGGSCHHHHHTT------GGGTSS----SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred -CCcCCHHHHHHH------HHHHHh----cCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 443322222332 211111 3567888888888777888999999999988644
No 26
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=87.02 E-value=19 Score=36.46 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy9553 235 HREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLR 312 (1282)
Q Consensus 235 ~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~ 312 (1282)
...++.+...+++....+.. .|.++..+..++.....++..+...+..+..+...-.-|..-+.+-+++.-..+..+.
T Consensus 10 ~~~~~dl~~Wl~~~~~~l~~~e~~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~ 89 (185)
T 3lbx_B 10 FSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVM 89 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC--CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34445555555555554442 3566666666666666666666555666666654444443333333344456678899
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy9553 313 YTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 313 ~~w~~l~~~~~~~~~~l~~ 331 (1282)
..|..+..........|..
T Consensus 90 ~~w~~L~~~w~~r~~~L~~ 108 (185)
T 3lbx_B 90 SRRKEMNEKWEARWERLRM 108 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998887776666654
No 27
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=86.72 E-value=43 Score=37.08 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVD 309 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~ 309 (1282)
..+...+..+.+.+.+....|... +.++.++...+.....+...+......+..+...-.-|..-+.+-++.....+.
T Consensus 7 qqf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~ 86 (326)
T 3kbt_A 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQG 86 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Confidence 345666777777888877777654 467888888888888777777777777777776655554444332333345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHH-
Q psy9553 310 SLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGL-SPREASDRLILFQNRFDGM- 387 (1282)
Q Consensus 310 ~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~-~~~ea~~~l~~~~~~l~~l- 387 (1282)
.+...|..+..........|+... .+ ..+..++..+..=+..- +.+-...+...+. .+.......+.|...+..+
T Consensus 87 ~l~~~w~~L~~~~~~R~~~Le~~l-~l-~~f~~~~~~l~~Wl~~~-e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~~~ 163 (326)
T 3kbt_A 87 QVDKHYAGLKDVAEERKRKLENMY-HL-FQLKRETDDLEQWISEK-ELVASSPEMGQDFDHVTLLRDKFRDFARETGAIG 163 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH-HHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH-HHHHccccCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999999988877777666432 11 12233334443333331 2222233322221 1223344455555555553
Q ss_pred HHHHHHHHHhh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9553 388 WRKLQTYQSGE-ELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYY 439 (1282)
Q Consensus 388 ~~~~~~l~~~e-~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~w~ 439 (1282)
...+..++... .+..-..+. -..+...+..+..-|..+...........
T Consensus 164 ~~~v~~l~~~~~~L~~~~~~~---~~~i~~~~~~l~~~W~~l~~~~~~r~~~L 213 (326)
T 3kbt_A 164 QERVDNVNAFIERLIDAGHSE---AATIAEWKDGLNEMWADLLELIDTRMQLL 213 (326)
T ss_dssp HHHHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555432 333322222 34566667777777877766655544443
No 28
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.25 E-value=1.6 Score=48.98 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=62.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC---CCCceEEEEcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK---PGDHVWLVLDG 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~---~~~~~WivfDG 994 (1282)
|.|+|||++.+.+++++..-+.......+|+.... ..+ .+...++...... .+.++-||+|.
T Consensus 54 ~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe 118 (327)
T 1iqp_A 54 PPGVGKTTAALALARELFGENWRHNFLELNASDER--------------GIN-VIREKVKEFARTKPIGGASFKIIFLDE 118 (327)
T ss_dssp CTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH--------------HHH-TTHHHHHHHHHSCCGGGCSCEEEEEET
T ss_pred cCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC--------------chH-HHHHHHHHHHhhCCcCCCCCeEEEEeC
Confidence 68999999999999987532111223345543210 011 1122233332221 14467899996
Q ss_pred CCChh---hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 995 PVDSI---WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 995 ~vd~~---WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
+|.. -.+.|-..|++ .++++++|+=+.+.....|+..|||..+.+.|-
T Consensus 119 -~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l 169 (327)
T 1iqp_A 119 -ADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 169 (327)
T ss_dssp -GGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCC
T ss_pred -CCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCCccccCHHHHhhCcEEEecCC
Confidence 4332 22223233332 245678888777777777889999999988863
No 29
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.23 E-value=1.3 Score=50.11 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=73.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-------------------ceeeeeccCCCCcccccceecCCCCccccchHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-------------------HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRK 978 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-------------------~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~ 978 (1282)
|.|+|||++.+.+++++..-+.. ...+.++|.. . ..+-.-..+-.+...
T Consensus 32 ~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-----------~-~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 32 LPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK-----------G-KNTLGVDAVREVTEK 99 (334)
T ss_dssp CTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT-----------T-CSSBCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc-----------c-CCCCCHHHHHHHHHH
Confidence 68999999999999998542210 1122334320 0 111111112233333
Q ss_pred HhccC-CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC
Q psy9553 979 TLKLK-PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 979 ~~~~~-~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~ 1057 (1282)
+.... .+.++=+|+|. +|..=-+..|.+| |.|-= -|+++.+||=+.+....-|+-.|||-.+.|.+-.
T Consensus 100 ~~~~~~~~~~kvviIde-ad~l~~~a~naLL---k~lEe-------p~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~ 168 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTD-AALLTDAAANALL---KTLEE-------PPAETWFFLATREPERLLATLRSRCRLHYLAPPP 168 (334)
T ss_dssp TTSCCTTSSCEEEEESC-GGGBCHHHHHHHH---HHHTS-------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HhhccccCCcEEEEECc-hhhcCHHHHHHHH---HHhcC-------CCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC
Confidence 33222 24578889996 5554445555554 22211 2467888998888888889999999999997543
Q ss_pred CCcHHHHHHHhcc
Q psy9553 1058 LDWSPIVAAWLRG 1070 (1282)
Q Consensus 1058 ~~~~~~~~swl~~ 1070 (1282)
..-+..|+..
T Consensus 169 ---~~~~~~~L~~ 178 (334)
T 1a5t_A 169 ---EQYAVTWLSR 178 (334)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 3345567654
No 30
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.01 E-value=0.84 Score=51.62 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc-CCCCcccccceec--CCCCc--cccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP-KAITAAQMFGRLD--VATND--WTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp-k~i~~~~LyG~~d--~~t~e--W~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.+++++ +.+ .+.++- ...+..++.|... +.++. |..|.+ ....+++
T Consensus 54 ~pGtGKT~la~~la~~~---~~~--~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l-------------~~~vl~i 115 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTM---DLD--FHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV-------------FSNFILA 115 (331)
T ss_dssp CCCHHHHHHHHHHHHHT---TCC--EEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT-------------CSSEEEE
T ss_pred CCCCcHHHHHHHHHHHh---CCC--eEEEecCCCCChhhcCCceeecCCCCceEeccCcc-------------cccEEEE
Confidence 79999999999998865 333 233332 1233455666543 22222 333433 1358888
Q ss_pred cCCCChh---hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-----CCCccchhcccc-cccCCCC
Q psy9553 993 DGPVDSI---WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-----NASPATVSRNGM-VYMSSSG 1057 (1282)
Q Consensus 993 DG~vd~~---WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-----~asPAtvSRcgm-vy~~~~~ 1057 (1282)
|. +|.. -...|..+|++.. +++ .|..+..+..+.++.=..... ..+||..+||++ |.+++-+
T Consensus 116 DE-i~~~~~~~~~~Ll~~l~~~~-~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~ 186 (331)
T 2r44_A 116 DE-VNRSPAKVQSALLECMQEKQ-VTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLD 186 (331)
T ss_dssp ET-GGGSCHHHHHHHHHHHHHSE-EEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCC
T ss_pred Ec-cccCCHHHHHHHHHHHhcCc-eee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCC
Confidence 86 4433 2333445566544 444 578888888887775322111 257999999997 8887653
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.65 E-value=0.85 Score=50.89 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC--CceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE--PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~--~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~ 995 (1282)
|+|+|||++.+.+++.+...+. ....+.+++..+. ++++|... +-+..+++.+ ...-|++|-
T Consensus 75 ~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~~--------~~~~~~~~~~------~~~vl~iDE- 138 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHTA--------PKTKEVLKRA------MGGVLFIDE- 138 (309)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCHH--------HHHHHHHHHH------TTSEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhcccccH--------HHHHHHHHhc------CCCEEEEEC-
Confidence 8999999999999999877543 2234556655442 33333321 1223344433 134788885
Q ss_pred CC------------hhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecC-----CCCCCCccchhcc-cccccCCC
Q psy9553 996 VD------------SIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPH-----NIDNASPATVSRN-GMVYMSSS 1056 (1282)
Q Consensus 996 vd------------~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~-----dL~~asPAtvSRc-gmvy~~~~ 1056 (1282)
+| ..-...|..+|++.+ .++.+|+=.. .+....|+..||| -.|+|.+-
T Consensus 139 id~l~~~~~~~~~~~~~~~~Ll~~l~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~ 204 (309)
T 3syl_A 139 AYYLYRPDNERDYGQEAIEILLQVMENNR-------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDY 204 (309)
T ss_dssp GGGSCCCC---CCTHHHHHHHHHHHHHCT-------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCC
T ss_pred hhhhccCCCcccccHHHHHHHHHHHhcCC-------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCc
Confidence 44 334455566666542 4455555432 1111249999999 45666643
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.54 E-value=3.8 Score=45.81 Aligned_cols=114 Identities=15% Similarity=0.037 Sum_probs=68.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc-ccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA-AQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG-- 994 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~-~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG-- 994 (1282)
|+|+|||++.+.+++.+. . ..+.+|.-+++. ++++ ..++ ........+++|.
T Consensus 46 ~~GtGKT~la~~i~~~~~---~--~~~~~~~~~~~~~~~l~----------------~~l~----~~~~~~~~l~lDEi~ 100 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHELG---V--NLRVTSGPAIEKPGDLA----------------AILA----NSLEEGDILFIDEIH 100 (324)
T ss_dssp CTTCCCHHHHHHHHHHHT---C--CEEEECTTTCCSHHHHH----------------HHHT----TTCCTTCEEEETTTT
T ss_pred CCCCCHHHHHHHHHHHhC---C--CEEEEeccccCChHHHH----------------HHHH----HhccCCCEEEEECCc
Confidence 799999999999988763 2 233345443321 1111 1221 1123456899996
Q ss_pred CCChhhhhhhhhhccCCccccccCCC----eee-cCCCCeEEEecCCCCCCCccchhccc-ccccCCC
Q psy9553 995 PVDSIWIENLNSVLDDNRTLTLANGD----RLS-MALAVKIIFEPHNIDNASPATVSRNG-MVYMSSS 1056 (1282)
Q Consensus 995 ~vd~~WiE~mnsvlDdnk~L~L~nge----ri~-l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~ 1056 (1282)
.+++...+.+-.+|++.....+..+. .+. -+++++++.-+.......|+..+||+ .+.+.+-
T Consensus 101 ~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 101 RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 24444566677778776543332211 111 23478899988888888899999997 5667653
No 33
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=84.31 E-value=21 Score=32.88 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHH----H
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDR---TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKED----L 305 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~---~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~----~ 305 (1282)
.+...++.+...+.+....|.. .+.+++.+...+.....+...+...+..+..+...-.-|...+ ..++++ .
T Consensus 6 ~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~-~~~~~~~~~i~ 84 (118)
T 3uul_A 6 SYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQG-TLSDEEEFEIQ 84 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 4566677777888777666654 3568888888888888888888777888887877665554433 233332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9553 306 EQVDSLRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 306 ~~~~~l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
..+..+...|..+...+.+....|+.
T Consensus 85 ~~l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 85 EQMTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999988877776655543
No 34
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.04 E-value=0.8 Score=46.53 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----CceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|.|+|||++.+.+++.+..... ....+.++... +.... ....++. ..+..+++.+.. .+....|++
T Consensus 51 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~vl~i 121 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----LVAGA-KYRGEFE-ERLKGVLNDLAK--QEGNVILFI 121 (195)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----HHTTT-CSHHHHH-HHHHHHHHHHHH--STTTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----HhccC-CccccHH-HHHHHHHHHHhh--cCCCeEEEE
Confidence 7999999999999998865221 12223333321 11000 0000111 122333333332 233567999
Q ss_pred cCCCChh-----------hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-----CCCccchhcccccccCCC
Q psy9553 993 DGPVDSI-----------WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-----NASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 993 DG~vd~~-----------WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-----~asPAtvSRcgmvy~~~~ 1056 (1282)
|. +|.. ..+-++.+++. .++.+|+-+.+.. ...|+..+||..|++.+-
T Consensus 122 De-~~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p 185 (195)
T 1jbk_A 122 DE-LHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp ET-GGGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred eC-HHHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCC
Confidence 96 3322 12333344432 2455666555433 457999999998888754
No 35
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.92 E-value=4.4 Score=45.08 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=67.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhc---cC-CCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK---LK-PGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~---~~-~~~~~WivfD 993 (1282)
|.|+|||++.+.+++.+..-+.......+|+... .. -+.+..+++.+.. .. .+.++-||+|
T Consensus 50 ~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-------------~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-------------RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp STTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-------------CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc-------------cC--hHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 7899999999999998743221122333443220 00 1122233333331 11 2347889999
Q ss_pred CCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhc
Q psy9553 994 GPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069 (1282)
Q Consensus 994 G~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~ 1069 (1282)
. +|..=-+..|.++ .+-. ..++++.+++=+.+.....|+..|||..|.+.|-. ..-+..|+.
T Consensus 115 e-~~~l~~~~~~~L~------~~le----~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~---~~~~~~~l~ 176 (323)
T 1sxj_B 115 E-ADSMTAGAQQALR------RTME----LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS---DEDVLKRLL 176 (323)
T ss_dssp S-GGGSCHHHHHTTH------HHHH----HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC---HHHHHHHHH
T ss_pred C-cccCCHHHHHHHH------HHHh----ccCCCceEEEEeCChhhchhHHHhhceEEeecCCC---HHHHHHHHH
Confidence 6 3332122222221 1110 12467788887777777788889999999988643 233444553
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.79 E-value=1.7 Score=55.24 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|+|+|||++.+.+++++.. .....+.+|.- ++.+..... .|.++..+|+. ....++||- .
T Consensus 529 p~GtGKT~lA~ala~~l~~--~~~~~i~i~~s-----~~~~~~~~~-----~~~l~~~~~~~------~~~vl~lDEi~~ 590 (758)
T 3pxi_A 529 PTGVGKTELARALAESIFG--DEESMIRIDMS-----EYMEKHSTS-----GGQLTEKVRRK------PYSVVLLDAIEK 590 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHS--CTTCEEEEEGG-----GGCSSCCCC--------CHHHHHHC------SSSEEEEECGGG
T ss_pred CCCCCHHHHHHHHHHHhcC--CCcceEEEech-----hcccccccc-----cchhhHHHHhC------CCeEEEEeCccc
Confidence 8999999999999998743 22334445533 333322211 66777777653 235899995 4
Q ss_pred CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC------------CCCccchhcc-cccccCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID------------NASPATVSRN-GMVYMSS 1055 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~------------~asPAtvSRc-gmvy~~~ 1055 (1282)
.++.-...|..+||+++ ++-..|..+.. .++++|+=+..-. .-.|+-.+|| .+|+|.|
T Consensus 591 ~~~~~~~~Ll~~le~g~-~~~~~g~~~~~-~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~ 661 (758)
T 3pxi_A 591 AHPDVFNILLQVLEDGR-LTDSKGRTVDF-RNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHS 661 (758)
T ss_dssp SCHHHHHHHHHHHHHSB-CC-----CCBC-TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC-
T ss_pred cCHHHHHHHHHHhccCe-EEcCCCCEecc-CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCC
Confidence 55666777788898854 56666665444 5677887554211 1468999999 4666664
No 37
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.70 E-value=0.87 Score=48.72 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=52.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccc-cee--cCCCCccc---cchHHHHHH-----HHhccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMF-GRL--DVATNDWT---DGIFSALWR-----KTLKLKPGD 986 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~Ly-G~~--d~~t~eW~---dG~~~~~~r-----~~~~~~~~~ 986 (1282)
|.|+||||..+.|++.+...|.+....+=.|..-..++.+ +.+ ++...+|. ..++-..-| +.....-..
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~I~paL~~ 114 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALAR 114 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999988776633444467543333332 223 22223343 222111112 111111123
Q ss_pred ceEEEEc-------------CCCChhhhhhhhhh
Q psy9553 987 HVWLVLD-------------GPVDSIWIENLNSV 1007 (1282)
Q Consensus 987 ~~WivfD-------------G~vd~~WiE~mnsv 1007 (1282)
.+|+|+| ..+|..|++.+|..
T Consensus 115 g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~ 148 (236)
T 3lv8_A 115 GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT 148 (236)
T ss_dssp TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH
Confidence 5799999 25888999998864
No 38
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=81.73 E-value=56 Score=34.45 Aligned_cols=188 Identities=11% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHh-HHHHHHhhHHHHHHHHhhhh----cCCCCCH
Q psy9553 230 LRKKYHREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQ-EVDMELKIEPIEEAYNVITR----YDLPVDK 302 (1282)
Q Consensus 230 L~~~~~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~-~~~le~~i~~i~e~~~lL~~----~~~~l~~ 302 (1282)
+...+...+.++.+.+......+.. .|.++.++...+..+...+.. .+....+...+...|..|.. -.+..|+
T Consensus 12 ~~~eYe~~as~Ll~WI~~~~~~l~~r~f~~sl~~vq~~l~~f~~fr~~ekppk~~EK~~Le~ll~~lqtklr~~~~~ppe 91 (235)
T 2odv_A 12 RWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPP 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3356677777888888777776654 478999888777777666543 34444444555555555421 1233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCCCCHHH
Q psy9553 303 EDLEQVDSLRYTWQKLLARAMTANVLLTTM------QPRFEQDLADNLAQFRQDKVD----YCHEYRTSGPMMPGLSPRE 372 (1282)
Q Consensus 303 e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~------k~~f~~~L~~~~~~f~~~i~~----~~~~~~~~~p~~~~~~~~e 372 (1282)
. .. ...+...|..+.....+.+..|... .+...+.+...+..++.-+.. +..++.... ........+
T Consensus 92 g-~~-~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~-~~~a~k~~e 168 (235)
T 2odv_A 92 G-YH-PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLA-AGKVPQRAG 168 (235)
T ss_dssp T-CS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCSCHH
T ss_pred C-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHH
Confidence 3 22 4566788999887665554444322 122333333344444433332 222333222 112223344
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy9553 373 A-SDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYN 429 (1282)
Q Consensus 373 a-~~~l~~~~~~l~~l~~~~~~l~~~e~lf~l~~t~~~~L~~l~~el~~~~~lW~~~~ 429 (1282)
+ ...|..+..++..+...++.++. ..|++.+.+......+..-|..+.
T Consensus 169 ~ie~dL~~~e~~i~~l~~~a~~L~~---------~~y~~a~~i~~r~~~l~~~w~~L~ 217 (235)
T 2odv_A 169 EVERDLDKADSMIRLLFNDVQTLKD---------GRHPQGEQMYRRVYRLHKRLVAIR 217 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 34577777778777777777764 467778888777766666665544
No 39
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.17 E-value=0.82 Score=48.11 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=52.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee--cCC---CCcc---ccchHHHHHHHH-hc----cCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL--DVA---TNDW---TDGIFSALWRKT-LK----LKP 984 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~--d~~---t~eW---~dG~~~~~~r~~-~~----~~~ 984 (1282)
+.|+||||..+.|++.+...|.+...++=.|..-..++..-.+ ++. ..++ +..++-..-|.. .. ..-
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~paL 90 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPAL 90 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999988776333445567654333332211 111 1233 333332223321 11 111
Q ss_pred CCceEEEEc----------C---CCChhhhhhhhhh
Q psy9553 985 GDHVWLVLD----------G---PVDSIWIENLNSV 1007 (1282)
Q Consensus 985 ~~~~WivfD----------G---~vd~~WiE~mnsv 1007 (1282)
...+|+|+| | .+|..|++.+|..
T Consensus 91 ~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~ 126 (213)
T 4tmk_A 91 ANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA 126 (213)
T ss_dssp HTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH
Confidence 235799999 3 5788999999874
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.76 E-value=1.2 Score=47.08 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=64.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee---eeeccCCCC---cccccceecCCCCccccchHHHHHHHHhcc-CCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE---MRMNPKAIT---AAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~---~~inpk~i~---~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~Wi 990 (1282)
|.|+|||++.+.+++.+..-...... ...+...+. ..++++. +....... +.+..+++.+... ..+.+..|
T Consensus 53 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vl 130 (250)
T 1njg_A 53 TRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI-DAASRTKV-EDTRDLLDNVQYAPARGRFKVY 130 (250)
T ss_dssp STTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE-ETTCGGGH-HHHHHHHHSCCCSCSSSSSEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe-cCcccccH-HHHHHHHHHhhhchhcCCceEE
Confidence 79999999999998877532110000 000000000 1122221 22111111 1233444433222 12346799
Q ss_pred EEcCC--CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCC
Q psy9553 991 VLDGP--VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 991 vfDG~--vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~ 1055 (1282)
|+|.- +++...+.+-..|++ .++++.+|+=+.+.....|+..+||-.+.+.|
T Consensus 131 viDe~~~l~~~~~~~l~~~l~~-------------~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~ 184 (250)
T 1njg_A 131 LIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 184 (250)
T ss_dssp EEETGGGSCHHHHHHHHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred EEECcccccHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCCHHHHHHhhhccCCC
Confidence 99962 344444444444443 14567788877776677788999998888875
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.75 E-value=1.2 Score=49.44 Aligned_cols=123 Identities=11% Similarity=0.148 Sum_probs=64.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~v 996 (1282)
|+|+|||++.+.+++++ |. ..+.++. .+|.+.+- .-..+.+..+++.+... ......-|++|- +
T Consensus 44 ppGtGKT~la~aiA~~l---~~--~~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE-i 108 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKM---GI--NPIMMSA-----GELESGNA----GEPAKLIRQRYREAAEIIRKGNMCCLFIND-L 108 (293)
T ss_dssp CTTSCHHHHHHHHHHHH---TC--CCEEEEH-----HHHHCC-------HHHHHHHHHHHHHHHHHTTSSCCCEEEEC-C
T ss_pred CCCCCHHHHHHHHHHHh---CC--CEEEEeH-----HHhhhccC----chhHHHHHHHHHHHHHHHhcCCCeEEEEec-h
Confidence 89999999999999987 22 2333443 33332211 11233444455554211 122345677774 4
Q ss_pred Ch----------------hhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccch--hcccccccCC
Q psy9553 997 DS----------------IWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATV--SRNGMVYMSS 1055 (1282)
Q Consensus 997 d~----------------~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtv--SRcgmvy~~~ 1055 (1282)
|. .....|..+||+.....+.......-..++.+|.=+.+....-||.. +|+..++.-|
T Consensus 109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P 185 (293)
T 3t15_A 109 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 185 (293)
T ss_dssp C--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECC
T ss_pred hhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCc
Confidence 43 23466677788665555555445455667888888888888888877 4776644433
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.33 E-value=3.5 Score=49.04 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-----ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-----HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-----~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|+..+..-+.| ..++.+|.- |.+ .+++.+ -+..++..+... ...=+++
T Consensus 209 ~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------~~~---~g~~e~-~~~~~~~~~~~~---~~~iLfi 273 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------TKY---RGEFED-RLKKVMDEIRQA---GNIILFI 273 (468)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------CT-THHHHHHHHHTC---CCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------ccc---cchHHH-HHHHHHHHHHhc---CCeEEEE
Confidence 79999999999999988543222 122333322 111 233332 344555555432 2346778
Q ss_pred cCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-----CCCccchhcccccccCCCC
Q psy9553 993 DGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-----NASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 993 DG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-----~asPAtvSRcgmvy~~~~~ 1057 (1282)
||..|+. .-|..+|. .| .+++|.=+..-. ...||-.+||..|++++-.
T Consensus 274 D~~~~a~--~~L~~~L~--------~g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 274 DAAIDAS--NILKPSLA--------RG-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (468)
T ss_dssp CC----------CCCTT--------SS-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred eCchhHH--HHHHHhhc--------CC-------CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCC
Confidence 8766642 22333333 23 466776665444 3569999999999998653
No 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.69 E-value=1.3 Score=51.00 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=63.1
Q ss_pred CCCCChhHHHHHHHHHHHhcC-----C-CceeeeeccCCCC----------cccccceecCCCCccccchHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE-----E-PHREMRMNPKAIT----------AAQMFGRLDVATNDWTDGIFSALWRKTLK 981 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~-----~-~~~~~~inpk~i~----------~~~LyG~~d~~t~eW~dG~~~~~~r~~~~ 981 (1282)
|.|+|||++.+.+++.+.... . ....+.+|....+ ..+|.|.--+.+..=.+.++..+...+.
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~- 131 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR- 131 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-
Confidence 899999999999998875431 1 3344456644433 2333333111111112334444443322
Q ss_pred cCCCCceEEEEcCCCChh----hhhh-hhhhccCCccccccCCCeeecCCCCeEEEecCCC---CCCCccchhcc-cccc
Q psy9553 982 LKPGDHVWLVLDGPVDSI----WIEN-LNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI---DNASPATVSRN-GMVY 1052 (1282)
Q Consensus 982 ~~~~~~~WivfDG~vd~~----WiE~-mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL---~~asPAtvSRc-gmvy 1052 (1282)
..+.-||+|- +|.. +-+. +..+++-. .++.+|+=+.+. ....|+..||+ ..+.
T Consensus 132 ---~~~~vlilDE-i~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~ 193 (384)
T 2qby_B 132 ---NIRAIIYLDE-VDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVLSSLGPSVI 193 (384)
T ss_dssp ---SSCEEEEEET-THHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEE
T ss_pred ---cCCCEEEEEC-HHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHHhcCCCeEE
Confidence 1122888995 3332 1222 33332211 567777766655 56688888995 4566
Q ss_pred cCCC
Q psy9553 1053 MSSS 1056 (1282)
Q Consensus 1053 ~~~~ 1056 (1282)
+.|-
T Consensus 194 l~~l 197 (384)
T 2qby_B 194 FKPY 197 (384)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6653
No 44
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.62 E-value=0.81 Score=47.71 Aligned_cols=21 Identities=10% Similarity=-0.187 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|++.+...|
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 678999999999999886544
No 45
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.44 E-value=2 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.133 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.||||||..+.|++.+.. |.+
T Consensus 34 ~~GsGKsT~~~~l~~~l~~-~~~ 55 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK-DYD 55 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT-TSC
T ss_pred CCCCCHHHHHHHHHHHHhc-CCC
Confidence 7899999999999999876 543
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.33 E-value=3.3 Score=53.34 Aligned_cols=104 Identities=21% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC----CcccccceecCCCCcccc-chHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI----TAAQMFGRLDVATNDWTD-GIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i----~~~~LyG~~d~~t~eW~d-G~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|+..+..-+ ...+.+|.-.+ +..+|+|.- |..-.+.. |.|+..+|+.. ...++|
T Consensus 596 p~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~~~~~------~~vl~l 666 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAVRRRP------YSVILF 666 (854)
T ss_dssp CSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGGGC---------------CHHHHHHHCS------SEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHHHhCC------CeEEEE
Confidence 799999999999999875322 23344554443 345677653 11123333 77777776521 358999
Q ss_pred cC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEE
Q psy9553 993 DG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIF 1032 (1282)
Q Consensus 993 DG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~F 1032 (1282)
|- ..++.-...|..+||+.+ ++-..|..+.+ .++.+|+
T Consensus 667 DEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~ 706 (854)
T 1qvr_A 667 DEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIIL 706 (854)
T ss_dssp SSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEE
T ss_pred ecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEE
Confidence 96 455666667778888766 45556666655 2344555
No 47
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=79.01 E-value=1.8 Score=44.31 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
|.||||||+.+.|++.+...|.++
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHCCC-E
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeE
Confidence 578999999999999987766554
No 48
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=78.93 E-value=1.3 Score=46.62 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=48.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCccccccee--cCCCCcccc---chHHHHHHH-----HhccCCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRL--DVATNDWTD---GIFSALWRK-----TLKLKPGDH 987 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~--d~~t~eW~d---G~~~~~~r~-----~~~~~~~~~ 987 (1282)
|.|+||||..+.|++.+...|.++. .+=.|-.-..++....+ ++...+|.+ .++-..-|- .....-...
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~~~~v~-~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g 92 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRERGIEVQ-LTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARG 92 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEE-EEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999987776553 33356432223322221 222223433 222111121 111111234
Q ss_pred eEEEEcC-------------CCChhhhhhhhhh
Q psy9553 988 VWLVLDG-------------PVDSIWIENLNSV 1007 (1282)
Q Consensus 988 ~WivfDG-------------~vd~~WiE~mnsv 1007 (1282)
+|+|+|- .+|..|++.+|..
T Consensus 93 ~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~ 125 (213)
T 4edh_A 93 AVVLCDRFTDATYAYQGGGRGLPEARIAALESF 125 (213)
T ss_dssp CEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred CEEEECccHhHHHHHhhhccCCCHHHHHHHHHH
Confidence 7999992 4688899988863
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.73 E-value=4.3 Score=46.00 Aligned_cols=60 Identities=7% Similarity=0.121 Sum_probs=39.1
Q ss_pred CceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 986 ~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.++-+|+|-+ |..=.+.-|.++. +|- ..++++++||=+++....-|+-.|||-.+.|.|-
T Consensus 134 ~~~vlilDE~-~~L~~~~~~~L~~---~le-------~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 134 RYKCVIINEA-NSLTKDAQAALRR---TME-------KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAP 193 (354)
T ss_dssp CCEEEEEECT-TSSCHHHHHHHHH---HHH-------HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCC
T ss_pred CCeEEEEeCc-cccCHHHHHHHHH---HHH-------hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCc
Confidence 5679999974 2222233333321 110 1245788999899998888999999988888753
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.69 E-value=2.6 Score=47.22 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC--CCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK--PGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~--~~~~~WivfDG~ 995 (1282)
|+|+|||++.+.+++++. ..++.+|+.... -+.+...+.+..... .+..+-|++|-
T Consensus 56 ~~G~GKT~la~~la~~l~-----~~~~~i~~~~~~----------------~~~i~~~~~~~~~~~~~~~~~~vliiDE- 113 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDVN-----ADMMFVNGSDCK----------------IDFVRGPLTNFASAASFDGRQKVIVIDE- 113 (324)
T ss_dssp STTSSHHHHHHHHHHHTT-----EEEEEEETTTCC----------------HHHHHTHHHHHHHBCCCSSCEEEEEEES-
T ss_pred cCCCCHHHHHHHHHHHhC-----CCEEEEcccccC----------------HHHHHHHHHHHHhhcccCCCCeEEEEEC-
Confidence 799999999999988762 344556643311 112233333333322 23567889996
Q ss_pred CChhh----hhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCC
Q psy9553 996 VDSIW----IENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 996 vd~~W----iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~ 1057 (1282)
+|..- .+.+..+|++ .++++++|+=+.+.....|+..|||-.+.+.+-.
T Consensus 114 i~~l~~~~~~~~L~~~le~-------------~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 114 FDRSGLAESQRHLRSFMEA-------------YSSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp CCCGGGHHHHHHHHHHHHH-------------HGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred CcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 56443 2333334432 1356788887777777889999999998887543
No 51
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.21 E-value=2.3 Score=48.10 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch--HHHHHHHHhccC---CCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI--FSALWRKTLKLK---PGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~--~~~~~r~~~~~~---~~~~~Wivf 992 (1282)
|.|+||||+.+.+++++..-+....+.-+|+.. ..|+ +-..+..+.... .+.++-+|+
T Consensus 54 p~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-----------------~~~~~~ir~~i~~~~~~~~~~~~~~~viii 116 (340)
T 1sxj_C 54 PPGTGKTSTIVALAREIYGKNYSNMVLELNASD-----------------DRGIDVVRNQIKDFASTRQIFSKGFKLIIL 116 (340)
T ss_dssp SSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-----------------CCSHHHHHTHHHHHHHBCCSSSCSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-----------------cccHHHHHHHHHHHHhhcccCCCCceEEEE
Confidence 699999999999999875321111122233321 0121 111222233211 234678888
Q ss_pred cCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 993 DGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 993 DG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
|. +|..=-+..|.++ +++-- .++++++++=.......-|+-.|||..+.+.+-
T Consensus 117 De-~~~l~~~~~~~L~---~~le~-------~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l 169 (340)
T 1sxj_C 117 DE-ADAMTNAAQNALR---RVIER-------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 169 (340)
T ss_dssp TT-GGGSCHHHHHHHH---HHHHH-------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred eC-CCCCCHHHHHHHH---HHHhc-------CCCCeEEEEEecCccccchhHHhhceeEeccCC
Confidence 86 4433223333332 11111 245667777766666778999999998888753
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.13 E-value=3.9 Score=51.94 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-----ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-----HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-----~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|++.+..-+.+ ...+.+|. |.- ..+++. +-+..++..+.. ..+.-+++
T Consensus 209 ~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------g~~--~~G~~e-~~l~~~~~~~~~---~~~~iLfi 273 (758)
T 3pxi_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------GTK--YRGEFE-DRLKKVMDEIRQ---AGNIILFI 273 (758)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------C-TTHHHHHHHHHT---CCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------ccc--ccchHH-HHHHHHHHHHHh---cCCEEEEE
Confidence 89999999999999988553322 23333444 111 112222 234556665543 23456788
Q ss_pred cCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-----CCCccchhcccccccCCCC
Q psy9553 993 DGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-----NASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 993 DG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-----~asPAtvSRcgmvy~~~~~ 1057 (1282)
||..|+. ..|..+|+ +| .+++|.-+..-. ...||..+||-.|++++-+
T Consensus 274 D~~~~~~--~~L~~~l~--------~~-------~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 274 DAAIDAS--NILKPSLA--------RG-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (758)
T ss_dssp CC----------CCCTT--------SS-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred cCchhHH--HHHHHHHh--------cC-------CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCC
Confidence 9766532 22333333 23 466777666555 4689999999999998654
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.96 E-value=4.7 Score=48.89 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC-CcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI-TAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i-~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|+|+||||+.+.++..+.. ....++--.+ ...+++|... .|. |....-+++.........--+++|- +
T Consensus 116 p~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~~~~~~~g~~~----~~i-g~~~~~~~~~~~~a~~~~~vl~lDE-i 184 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGR-----KFVRISLGGVRDESEIRGHRR----TYV-GAMPGRIIQGMKKAGKLNPVFLLDE-I 184 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTC-----EEEEECCCC-------------------------CHHHHHHTTCSSSEEEEEEE-S
T ss_pred CCCCCHHHHHHHHHHhcCC-----CeEEEEecccchhhhhhhHHH----HHh-ccCchHHHHHHHHhhccCCEEEEhh-h
Confidence 7999999999999998732 2233443332 2345555432 111 2222222222222222223566664 5
Q ss_pred Chhhh-------hhhhhhccCCccccc-cCCCeeecC-CCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 997 DSIWI-------ENLNSVLDDNRTLTL-ANGDRLSMA-LAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 997 d~~Wi-------E~mnsvlDdnk~L~L-~ngeri~l~-~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
|..-- ..|-.+||+...-++ ..|....++ +++.+|.=+..+....||..+||-+|++++-
T Consensus 185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~ 253 (543)
T 3m6a_A 185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGY 253 (543)
T ss_dssp SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCC
T ss_pred hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCC
Confidence 54332 334455664322111 112222222 5678888788888889999999999888754
No 54
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=77.89 E-value=66 Score=33.00 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSL 311 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l 311 (1282)
+...++.+...+.+....+... +.+++++..++.....+...+...+..+..+...-.-|...+..-++.-...+..+
T Consensus 114 f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l 193 (216)
T 1u5p_A 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQF 193 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4555666677777665555543 35788888888888888888888888888888777766666644445555667889
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy9553 312 RYTWQKLLARAMTANVLLT 330 (1282)
Q Consensus 312 ~~~w~~l~~~~~~~~~~l~ 330 (1282)
...|..+...+......|+
T Consensus 194 ~~~W~~L~~~~~~R~~~L~ 212 (216)
T 1u5p_A 194 VDHWKELKQLAAARGQRLE 212 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888877666554
No 55
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=77.58 E-value=93 Score=39.75 Aligned_cols=153 Identities=8% Similarity=0.083 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhh----cC---CCCCHHHHHHHHHH
Q psy9553 241 VYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITR----YD---LPVDKEDLEQVDSL 311 (1282)
Q Consensus 241 l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~----~~---~~l~~e~~~~~~~l 311 (1282)
+...+++....|... ..+++++..++.......+.+...+.++..+.....-+.. +. +.-.+.....+..+
T Consensus 497 ~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 576 (863)
T 1sjj_A 497 FNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576 (863)
T ss_dssp THHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHH
T ss_pred HHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHH
Confidence 444455555555443 4567777777777777777776666666666555444433 21 11111111235678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9553 312 RYTWQKLLARAMTANVLLTTMQPR------FEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFD 385 (1282)
Q Consensus 312 ~~~w~~l~~~~~~~~~~l~~~k~~------f~~~L~~~~~~f~~~i~~~~~~~~~~~p~~~~~~~~ea~~~l~~~~~~l~ 385 (1282)
...|..+...+......|+....+ ....+..+.+.+..=+..-........+. ...+..+.+..++.+...+.
T Consensus 577 ~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~-~~~~le~~l~~~~~~~~el~ 655 (863)
T 1sjj_A 577 NGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIE-MHGTLEDQLNHLRQYEKSIV 655 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTC-TTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHHH
Confidence 899999999998888888765432 22222333333333333332222222211 12245556666666666554
Q ss_pred HHHHHHHHH
Q psy9553 386 GMWRKLQTY 394 (1282)
Q Consensus 386 ~l~~~~~~l 394 (1282)
........+
T Consensus 656 ~~~~~i~~l 664 (863)
T 1sjj_A 656 NYKPKIDQL 664 (863)
T ss_dssp TTGGGHHHH
T ss_pred HhHHHHHHH
Confidence 444333333
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.42 E-value=6.7 Score=44.79 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=65.5
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCceeeeeccCCCCc-cc----ccceecCC--CCcc-ccchHHHHHHHHhccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEV----EEPHREMRMNPKAITA-AQ----MFGRLDVA--TNDW-TDGIFSALWRKTLKLKPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~----~~~~~~~~inpk~i~~-~~----LyG~~d~~--t~eW-~dG~~~~~~r~~~~~~~~ 985 (1282)
|.|+|||++.+.+++.+... +.....+.+|.-..+. .+ ++..+... ...+ .+.++..+...+. ..+
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~ 129 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS--RLR 129 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT--TSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--ccC
Confidence 89999999999999887543 2234455577544332 22 22222110 1111 2223444433322 233
Q ss_pred CceEEEEcCCCChhh-----hhhhhhhccCCccccccCCCeeecCCCCeEEEecCCC---CCCCccchhcccc--cccCC
Q psy9553 986 DHVWLVLDGPVDSIW-----IENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI---DNASPATVSRNGM--VYMSS 1055 (1282)
Q Consensus 986 ~~~WivfDG~vd~~W-----iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL---~~asPAtvSRcgm--vy~~~ 1055 (1282)
.+.-|++|- +|..- -+.+..+++.. ..- +.+.++.+|+=+.+. ....|+..|||+. +.+.|
T Consensus 130 ~~~vlilDE-i~~l~~~~~~~~~l~~l~~~~------~~~--~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 130 GIYIIVLDE-IDFLPKRPGGQDLLYRITRIN------QEL--GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp SEEEEEEET-TTHHHHSTTHHHHHHHHHHGG------GCC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCC
T ss_pred CeEEEEEcc-HhhhcccCCCChHHHhHhhch------hhc--CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCC
Confidence 466899995 54432 13333333311 100 114566677766554 5668899999965 66665
Q ss_pred C
Q psy9553 1056 S 1056 (1282)
Q Consensus 1056 ~ 1056 (1282)
-
T Consensus 201 l 201 (387)
T 2v1u_A 201 Y 201 (387)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.35 E-value=4.8 Score=45.84 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecC--CCCccccchHHHHHHHHhccCCCCceEEEEcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDV--ATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~--~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~ 995 (1282)
|+||||||++++|...+..-........=+|-......--+.+.. ...+ .. -+...++.+.. .+...|++|=|
T Consensus 131 ptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~-~~-~~~~~La~aL~---~~PdvillDEp 205 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRD-TL-GFSEALRSALR---EDPDIILVGEM 205 (356)
T ss_dssp STTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTT-BS-CHHHHHHHHTT---SCCSEEEESCC
T ss_pred CCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccc-cC-CHHHHHHHHhh---hCcCEEecCCC
Confidence 799999999999999886542222222223332222111111110 0001 11 13344555443 34679999999
Q ss_pred CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc
Q psy9553 996 VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG 1049 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg 1049 (1282)
-|++-++.+-... . ....+++=+++.+.+ .++.|.-
T Consensus 206 ~d~e~~~~~~~~~---------------~-~G~~vl~t~H~~~~~--~~~dRli 241 (356)
T 3jvv_A 206 RDLETIRLALTAA---------------E-TGHLVFGTLHTTSAA--KTIDRVV 241 (356)
T ss_dssp CSHHHHHHHHHHH---------------H-TTCEEEEEESCSSHH--HHHHHHH
T ss_pred CCHHHHHHHHHHH---------------h-cCCEEEEEEccChHH--HHHHHHh
Confidence 9977655533321 1 133466667776644 5677743
No 58
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.34 E-value=2.6 Score=50.40 Aligned_cols=128 Identities=10% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcC--C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG--P 995 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG--~ 995 (1282)
|+|+|||++.+.++.++ +.......++....+..+|+|.++.... =..|.+.. +.........++++|- .
T Consensus 49 pPGtGKT~LAraLa~~l---~~~~~f~~~~~~~~t~~dL~G~~~~~~~-~~~g~~~~----~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAF---QNARAFEYLMTRFSTPEEVFGPLSIQAL-KDEGRYER----LTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CSSSSHHHHHHHGGGGB---SSCCEEEEECCTTCCHHHHHCCBC-----------CB----CCTTSGGGCSEEEEESGGG
T ss_pred CchHHHHHHHHHHHHHH---hhhhHHHHHHHhcCCHHHhcCcccHHHH-hhchhHHh----hhccCCCcceeeeHHhHhh
Confidence 79999999888877755 2222223344444466899997643210 01221110 0000000245788885 2
Q ss_pred CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCC---CCccchhcccc-cccCCC
Q psy9553 996 VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDN---ASPATVSRNGM-VYMSSS 1056 (1282)
Q Consensus 996 vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~---asPAtvSRcgm-vy~~~~ 1056 (1282)
.++.--..|-.+|++.. ++. .|....++..+ +++=+..+.. ..||-.+|.++ |++++.
T Consensus 121 ~~~~~q~~LL~~lee~~-v~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p 182 (500)
T 3nbx_X 121 AGPAILNTLLTAINERQ-FRN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKV 182 (500)
T ss_dssp CCHHHHHHHHHHHHSSE-EEC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSC
T ss_pred hcHHHHHHHHHHHHHHh-ccC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHHHHHh
Confidence 23444445556666554 344 57777777664 4555544432 33589999976 666643
No 59
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=77.14 E-value=3.5 Score=43.68 Aligned_cols=24 Identities=21% Similarity=-0.025 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV----EEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~----~~~~ 941 (1282)
|.|+||||..+.|++.+... |.++
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~~~~g~~v 60 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQERLGPAGRHV 60 (227)
T ss_dssp CC---CHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCCCHHHHHHHHHHHHHhhccccceee
Confidence 78899999999999999876 6554
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.14 E-value=1.6 Score=44.12 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=16.9
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.|+|||++.+.+++.+..
T Consensus 51 ~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CGGGCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 7899999999999998755
No 61
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=76.91 E-value=1.2 Score=48.53 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=41.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCC-C
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGP-V 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~-v 996 (1282)
+.||||||+.+.|++.+...|.++. +++.-.+ ...++| +++....+-.++....++.+. .. .++|+||. .
T Consensus 12 ~pGSGKSTla~~La~~L~~~g~~~i--~~~~D~~-~~~l~~-~~~~~e~~~~~~~~~~i~~~l----~~-~~vIiD~~~~ 82 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVI--VLGSDLI-RESFPV-WKEKYEEFIKKSTYRLIDSAL----KN-YWVIVDDTNY 82 (260)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEE--EECTHHH-HTTSSS-CCGGGHHHHHHHHHHHHHHHH----TT-SEEEECSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEE--EECchHH-HHHHhh-hhHHHHHHHHHHHHHHHHHHh----hC-CEEEEeCCcc
Confidence 5789999999999999877664432 2232111 123444 332211121122222223322 22 68899983 3
Q ss_pred Chhhhhhhhhh
Q psy9553 997 DSIWIENLNSV 1007 (1282)
Q Consensus 997 d~~WiE~mnsv 1007 (1282)
...+.+.+...
T Consensus 83 ~~~~~~~l~~~ 93 (260)
T 3a4m_A 83 YNSMRRDLINI 93 (260)
T ss_dssp SHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45555555543
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.17 E-value=3.2 Score=47.01 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhc-------------cC
Q psy9553 918 QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK-------------LK 983 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~-------------~~ 983 (1282)
|.|+|||++.+.+++.+..- +....+..+||...... ..+.+ .++.... ..
T Consensus 66 ~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (353)
T 1sxj_D 66 PPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI----------SIVRE-----KVKNFARLTVSKPSKHDLENYP 130 (353)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH----------HHHTT-----HHHHHHHSCCCCCCTTHHHHSC
T ss_pred CCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch----------HHHHH-----HHHHHhhhcccccchhhcccCC
Confidence 79999999999999987531 11223344666543110 01111 1111111 11
Q ss_pred CCCceEEEEcCCCChh---hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCC
Q psy9553 984 PGDHVWLVLDGPVDSI---WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056 (1282)
Q Consensus 984 ~~~~~WivfDG~vd~~---WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~ 1056 (1282)
.+..+-|++|- +|.. -.+.+..+|++. +.+.++++=+.+.....|+..|||..+.+.|-
T Consensus 131 ~~~~~vliiDE-~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~ 192 (353)
T 1sxj_D 131 CPPYKIIILDE-ADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVTRIIDPLASQCSKFRFKAL 192 (353)
T ss_dssp CCSCEEEEETT-GGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHHSEEEECCCC
T ss_pred CCCceEEEEEC-CCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchhhCcchhhccCceEEeCCC
Confidence 23457889996 5433 233333444431 34667787777777788999999998888753
No 63
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=75.32 E-value=1.3e+02 Score=35.11 Aligned_cols=123 Identities=11% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHH
Q psy9553 231 RKKYHREMDYVYAVMNEMDRKLDRT---ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQ 307 (1282)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~L~~~---p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~ 307 (1282)
...+...+..+...+.+....+... +.+++++...+.....+...+...+..+..+...-.-|..-++.-.+.-...
T Consensus 133 ~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~ 212 (476)
T 1hci_A 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDR 212 (476)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHH
Confidence 5666677777888888877777543 4688888888888888888888888888888877776655443322333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9553 308 VDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDY 354 (1282)
Q Consensus 308 ~~~l~~~w~~l~~~~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~ 354 (1282)
...+...|..+...+......|......+ ..+..-...|..++..+
T Consensus 213 ~~~l~~~W~~L~~~~~~R~~~L~~~~~~~-~~~e~l~~~f~~~a~~~ 258 (476)
T 1hci_A 213 CQKICDQWDRLGTLTQKRREALERMEKLL-ETIDQLHLEFAKRAAPF 258 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 77889999999998888777776643322 22333223455554444
No 64
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.23 E-value=2 Score=52.74 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=73.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceec--CCCCcc--ccchHHHHHHHHhccCCCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLD--VATNDW--TDGIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d--~~t~eW--~dG~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|+|+|||++.+.+++.+.. ..+. .-+..+...|.|... ..+++| ..|.+... +...+++|
T Consensus 335 ppGtGKT~LAr~la~~~~r-----~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A----------~~gil~ID 398 (595)
T 3f9v_A 335 DPGTAKSQMLQFISRVAPR-----AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA----------DGGIAVID 398 (595)
T ss_dssp SSCCTHHHHHHSSSTTCSC-----EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH----------SSSEECCT
T ss_pred CCchHHHHHHHHHHHhCCC-----ceec-CCCccccccccceeeeccccccccccCCeeEec----------CCCcEEee
Confidence 8999999977777665421 1111 112233344444332 224443 45655321 12356666
Q ss_pred C--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC-------------CCCccchhcccccccCC
Q psy9553 994 G--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID-------------NASPATVSRNGMVYMSS 1055 (1282)
Q Consensus 994 G--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~-------------~asPAtvSRcgmvy~~~ 1055 (1282)
- -.++.=-..|..+|++...---..|....++.++++|.=+.-.. .-+||..||++++++-.
T Consensus 399 Eid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~ 475 (595)
T 3f9v_A 399 EIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILK 475 (595)
T ss_dssp TTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEEC
T ss_pred hhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeC
Confidence 4 23344456677788876654456788889999999888665443 67889999999877653
No 65
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=72.01 E-value=4.2 Score=42.30 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
+-||||||..+.|++.|.+
T Consensus 10 ~dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 10 PEGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHHHC
Confidence 3579999999999999853
No 66
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.52 E-value=5.4 Score=43.11 Aligned_cols=32 Identities=9% Similarity=-0.097 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
-|.||||+.-.|+.++...|..+-+...+|-.
T Consensus 28 GGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 46999999999999999888766555566655
No 67
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.49 E-value=60 Score=29.53 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHH----HH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDR---TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKE----DL 305 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~---~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e----~~ 305 (1282)
.+...++.+...+.+....|.. .+.+++.+...+.....+...+...+..+..+...-.-|-.-+ ..+++ ..
T Consensus 6 ~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~-~~~~~~~~~i~ 84 (119)
T 3uun_A 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTG-KLSEDEETEVQ 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 4556677777777776665543 3568888888888888888888777777877777665553322 12222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9553 306 EQVDSLRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 306 ~~~~~l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
..+..+...|..+...+.+....|+.
T Consensus 85 ~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 85 EQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899888877766655543
No 68
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=71.10 E-value=2.9 Score=43.51 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
+.||||||+.+.|++.+...+.++
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcE
Confidence 678999999999999987655444
No 69
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.53 E-value=2.1 Score=43.88 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68899999999999876
No 70
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=70.24 E-value=1.1 Score=44.94 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=24.5
Q ss_pred hHHHHHHHHhccCCCCceEEEEcCCCChhhhhhhhhhcc
Q psy9553 971 IFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLD 1009 (1282)
Q Consensus 971 ~~~~~~r~~~~~~~~~~~WivfDG~vd~~WiE~mnsvlD 1009 (1282)
++..+....... .....+|+||...+..++.++...+
T Consensus 64 ~~~~~~~~~l~~--~~~~~vi~dg~~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 64 VVARLCVEELGT--SNHDLVVFDGVRSLAEVEEFKRLLG 100 (179)
T ss_dssp HHHHHHHHHHCS--CCCSCEEEECCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--cCCCeEEEeCCCCHHHHHHHHHHhC
Confidence 344444444432 3346789999988888888887764
No 71
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=68.82 E-value=54 Score=34.81 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH----HHHhhhhcCCC---CCHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEE----AYNVITRYDLP---VDKE 303 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e----~~~lL~~~~~~---l~~e 303 (1282)
.+...++.+...+.+....|... +.+++.+..++..+..+......++..+..|.. ...++..|... -++.
T Consensus 133 qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~ 212 (250)
T 1quu_A 133 EFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY 212 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTT
T ss_pred HHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCc
Confidence 45667777788888777777653 567788888888877777666677666666633 33445555532 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9553 304 DLEQVDSLRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 304 ~~~~~~~l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
....+..+...|..+...+......|+.
T Consensus 213 ~~~~~~~l~~~W~~L~~~~~~R~~~L~~ 240 (250)
T 1quu_A 213 STVTMDELRTKWDKVKQLVPIRDQSLQE 240 (250)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234567888999998888777666654
No 72
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.82 E-value=1 Score=55.59 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=41.6
Q ss_pred ceEEEEcC--CCChhhhhhhhhhccCCccccccCCC--------eeecCCCCeEEEecCC--CCCCCccchhccc
Q psy9553 987 HVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGD--------RLSMALAVKIIFEPHN--IDNASPATVSRNG 1049 (1282)
Q Consensus 987 ~~WivfDG--~vd~~WiE~mnsvlDdnk~L~L~nge--------ri~l~~~~~~~FEv~d--L~~asPAtvSRcg 1049 (1282)
..++++|- -.++.=-+.|..+|++.+.--...++ .-++|.++++|+=+.- +..-.|+..+||-
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~ 276 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIR 276 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHH
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhh
Confidence 35899994 44555556777788776654443322 3356778889886652 2467899999995
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=66.25 E-value=5.4 Score=42.02 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=20.9
Q ss_pred CCcccccchhHHHHHHHHHHHHh-cCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAK-QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~-~~~~~ll~G~~Gt~ 1282 (1282)
|.+++.+.........+....-. .+.+++|+||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~G 64 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSG 64 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSS
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCC
Confidence 44444423222333444333333 58899999999999
No 74
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=65.34 E-value=4 Score=43.89 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=33.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|.||||+.-.|+.++...|.++-.+..+|-.-+...++|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~ 52 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGC 52 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCC
Confidence 36899999999999999988877777788866666666664
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.12 E-value=12 Score=42.40 Aligned_cols=136 Identities=14% Similarity=0.077 Sum_probs=70.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCce--e-eeeccCCC---CcccccceecCCCCccccchHHHHHHHHhccC-CCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHR--E-MRMNPKAI---TAAQMFGRLDVATNDWTDGIFSALWRKTLKLK-PGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~--~-~~inpk~i---~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~-~~~~~Wi 990 (1282)
|.|+|||++.+.+++++..-..... . .+-+...+ ...++++ +++......+ -+..++..+.... .+.++-|
T Consensus 46 ~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vl 123 (373)
T 1jr3_A 46 TRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE-IDAASRTKVE-DTRDLLDNVQYAPARGRFKVY 123 (373)
T ss_dssp CTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE-EETTCSCCSS-CHHHHHHHTTSCCSSSSSEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE-ecccccCCHH-HHHHHHHHHhhccccCCeEEE
Confidence 6899999999999998753211000 0 00000000 0011111 2222211112 2344454443322 3446789
Q ss_pred EEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhc
Q psy9553 991 VLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069 (1282)
Q Consensus 991 vfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~ 1069 (1282)
|+|. +|..=-+..|.++. +-. ..++++.+|+-+.+.....|+-.|||-.+.+.+-. ..-+..|+.
T Consensus 124 iiDe-~~~l~~~~~~~Ll~------~le----~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~---~~~~~~~l~ 188 (373)
T 1jr3_A 124 LIDE-VHMLSRHSFNALLK------TLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD---VEQIRHQLE 188 (373)
T ss_dssp EEEC-GGGSCHHHHHHHHH------HHH----SCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC---HHHHHHHHH
T ss_pred EEEC-cchhcHHHHHHHHH------HHh----cCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC---HHHHHHHHH
Confidence 9996 33322233333321 110 13567888888888877888999999888887643 233455554
No 76
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=64.64 E-value=1.3e+02 Score=30.70 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
.+...++.+...+.+....|.. .+.+++++..++.....+.......+..+..+...-.-|..-+.+-++.-...+..
T Consensus 111 ~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~~~ 190 (214)
T 1s35_A 111 EFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQL 190 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666666666665555543 35688888888888888888777777777777776666654444444444456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy9553 311 LRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
+...|..+...+.+....|+.
T Consensus 191 l~~rw~~l~~~~~~R~~~L~~ 211 (214)
T 1s35_A 191 IEDRHRKNNEKAQEASVLLRD 211 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888877766653
No 77
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=64.17 E-value=5.8 Score=45.79 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.++..+. ...+.+|+-. |.|.+-.. ..+.+..+++.+... ...-|++|- +|
T Consensus 156 ppGtGKT~la~aia~~~~-----~~~~~v~~~~-----l~~~~~g~----~~~~~~~~~~~a~~~---~~~il~iDE-id 217 (389)
T 3vfd_A 156 PPGNGKTMLAKAVAAESN-----ATFFNISAAS-----LTSKYVGE----GEKLVRALFAVAREL---QPSIIFIDQ-VD 217 (389)
T ss_dssp STTSCHHHHHHHHHHHTT-----CEEEEECSCC-----C-----------CHHHHHHHHHHHHHS---SSEEEEEET-GG
T ss_pred CCCCCHHHHHHHHHHhhc-----CcEEEeeHHH-----hhccccch----HHHHHHHHHHHHHhc---CCeEEEEEC-ch
Confidence 899999999998876542 3445566633 33332111 123344555544322 235678884 65
Q ss_pred hhhhhh-------hhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc-ccccCCCC
Q psy9553 998 SIWIEN-------LNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG-MVYMSSSG 1057 (1282)
Q Consensus 998 ~~WiE~-------mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~~ 1057 (1282)
..--.. ...++ +.+|..-.|-.-.-+..+.+|.=+.......||..+||. .|++.+-+
T Consensus 218 ~l~~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 218 SLLCERREGEHDASRRLK--TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp GGC--------CTHHHHH--HHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCC
T ss_pred hhcccCCCccchHHHHHH--HHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcC
Confidence 442111 00010 112222222222224556777777766677899999998 57777543
No 78
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=63.83 E-value=5.5 Score=42.98 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=30.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|.||||+.-.|+.++...|..+-.+..+|-.=+...++|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~ 52 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGM 52 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCC
Confidence 46899999999999999888777667777754445555553
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.19 E-value=71 Score=37.00 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=0.0
Q ss_pred hhhhhcHHHHHHHH
Q psy9553 652 DIAKQLPKEAKRFS 665 (1282)
Q Consensus 652 dI~~qLp~e~~~F~ 665 (1282)
|+.+..|.+++.|.
T Consensus 489 ~~~~rhpd~~~ff~ 502 (562)
T 3ghg_A 489 GFRHRHPDEAAFFD 502 (562)
T ss_dssp --------------
T ss_pred hhhhhCcchHhhcc
Confidence 45556666666554
No 80
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.07 E-value=12 Score=42.49 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~v 996 (1282)
|+|+|||++.+.++..+ + ...+.+|.- ++++.+ . |-....+|.+... ......-|++|- +
T Consensus 125 ppGtGKT~la~aia~~~---~--~~~~~i~~~-----~l~~~~-------~-g~~~~~~~~~~~~a~~~~~~vl~iDE-i 185 (357)
T 3d8b_A 125 PPGTGKTLIGKCIASQS---G--ATFFSISAS-----SLTSKW-------V-GEGEKMVRALFAVARCQQPAVIFIDE-I 185 (357)
T ss_dssp STTSSHHHHHHHHHHHT---T--CEEEEEEGG-----GGCCSS-------T-THHHHHHHHHHHHHHHTCSEEEEEET-H
T ss_pred CCCCCHHHHHHHHHHHc---C--CeEEEEehH-----Hhhccc-------c-chHHHHHHHHHHHHHhcCCeEEEEeC-c
Confidence 89999999999998764 2 234455553 333322 1 2223333332221 112346788884 3
Q ss_pred Chhhhhh-------hhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc-ccccCCC
Q psy9553 997 DSIWIEN-------LNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG-MVYMSSS 1056 (1282)
Q Consensus 997 d~~WiE~-------mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~ 1056 (1282)
|..--.. ...+ -+.+|..-.|-.-.-+.++.+|.=+.......||..+||. .+++..-
T Consensus 186 d~l~~~~~~~~~~~~~~~--~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p 251 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRI--KTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLP 251 (357)
T ss_dssp HHHTBC------CHHHHH--HHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCC
T ss_pred hhhhccCCCCcchHHHHH--HHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCc
Confidence 3221000 0000 0122222222222223456677666666667799999998 5566643
No 81
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=62.69 E-value=1.4e+02 Score=30.37 Aligned_cols=99 Identities=8% Similarity=0.017 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVD 309 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~ 309 (1282)
..+...++.+...+.+....+... +.+++.+..++.....+.......+..+..+.....-|..-+..-++.-...+.
T Consensus 109 ~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~ 188 (213)
T 1cun_A 109 QQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMK 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 345566777777777766666544 357788888888888888877777777777777666554433332333345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9553 310 SLRYTWQKLLARAMTANVLLT 330 (1282)
Q Consensus 310 ~l~~~w~~l~~~~~~~~~~l~ 330 (1282)
.+...|..+...+......|+
T Consensus 189 ~l~~~w~~l~~~~~~R~~~L~ 209 (213)
T 1cun_A 189 GLKGKVSDLEKAAAQRKAKLD 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 788899998888777666554
No 82
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=62.22 E-value=3.8 Score=43.60 Aligned_cols=44 Identities=7% Similarity=-0.155 Sum_probs=36.2
Q ss_pred CCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCCcccccceecC
Q psy9553 919 WLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAITAAQMFGRLDV 962 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~~~~LyG~~d~ 962 (1282)
-|.||||+.-.|+.++... |.++-....+|-.=+...++|..++
T Consensus 14 GGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~ 58 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTH 58 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCC
T ss_pred CCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCC
Confidence 3699999999999999988 8888778889987777788865443
No 83
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.96 E-value=2 Score=43.20 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||+.+.|++
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 688999999999987
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=61.93 E-value=6.5 Score=40.38 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=11.6
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
.+++|+||+|||
T Consensus 55 ~~~~l~G~~GtG 66 (202)
T 2w58_A 55 KGLYLHGSFGVG 66 (202)
T ss_dssp CEEEEECSTTSS
T ss_pred CeEEEECCCCCC
Confidence 899999999999
No 85
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=61.58 E-value=1.5e+02 Score=30.57 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHH
Q psy9553 238 MDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTW 315 (1282)
Q Consensus 238 ~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w 315 (1282)
+..+.+.+++....|... +.++..+...+...+.+...+...+..+..+... -..|...........+..+...|
T Consensus 29 ~~~l~~Wl~e~e~~l~s~d~g~Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~---~~~~~~~~~~~i~~~~~~l~~~~ 105 (224)
T 2iak_A 29 VQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKIS---EIQMTAPLKLSYTDKLHRLESQY 105 (224)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH---GGGCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHH
Confidence 444555555555555443 4577777777777776666666555555444321 12222122233334566788889
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9553 316 QKLLARAMTANVLLTTMQPRFEQDL 340 (1282)
Q Consensus 316 ~~l~~~~~~~~~~l~~~k~~f~~~L 340 (1282)
..+..........|+ .-..|....
T Consensus 106 ~~L~~~~~~R~~~Le-~l~~F~~~~ 129 (224)
T 2iak_A 106 AKLLNTSRNQERHLD-TLHNFVTRA 129 (224)
T ss_dssp HHTTTHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888777777766 333344433
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=61.17 E-value=14 Score=41.01 Aligned_cols=121 Identities=10% Similarity=0.080 Sum_probs=72.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-CceeeeeccCCCCcccccceecCCCCccccch--HHHHHHHHhccC-CCCceEEEEc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-PHREMRMNPKAITAAQMFGRLDVATNDWTDGI--FSALWRKTLKLK-PGDHVWLVLD 993 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~--~~~~~r~~~~~~-~~~~~WivfD 993 (1282)
|.|+|||++.+.|+++...... ...++.+||.. . .-|+ +-.++..+...+ .+.++-+|+|
T Consensus 26 p~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------~--~~~id~ir~li~~~~~~p~~~~~kvviId 89 (305)
T 2gno_A 26 EDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------E--NIGIDDIRTIKDFLNYSPELYTRKYVIVH 89 (305)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------S--CBCHHHHHHHHHHHTSCCSSSSSEEEEET
T ss_pred CCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------C--CCCHHHHHHHHHHHhhccccCCceEEEec
Confidence 6889999999999987433322 11234456531 0 1122 233444443332 2457889999
Q ss_pred CCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhcc
Q psy9553 994 GPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRG 1070 (1282)
Q Consensus 994 G~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~~ 1070 (1282)
. +|..=-+..|++| |.|-= -|+++.+||=+.+....-|+-.|| ++.|.|-.- .-+..|+..
T Consensus 90 e-ad~lt~~a~naLL---k~LEe-------p~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~---~~i~~~L~~ 150 (305)
T 2gno_A 90 D-CERMTQQAANAFL---KALEE-------PPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVP---KEFRDLVKE 150 (305)
T ss_dssp T-GGGBCHHHHHHTH---HHHHS-------CCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCC---HHHHHHHHH
T ss_pred c-HHHhCHHHHHHHH---HHHhC-------CCCCeEEEEEECChHhChHHHHce--eEeCCCCCH---HHHHHHHHH
Confidence 7 4554444555554 22221 257889999998888899999999 888875332 334556643
No 87
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=60.74 E-value=7.5 Score=41.03 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=31.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|.||||+.-.|+.++.+.|.++-.+..+|-.=+...++|.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~ 52 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGV 52 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCC
Confidence 46899999999999999888777777778765455555554
No 88
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.36 E-value=11 Score=44.37 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.+++++. ...+.+|.-..+..+ -.+++....... ..+.+.-+++|- ||
T Consensus 58 ppGtGKTtlAr~ia~~~~-----~~f~~l~a~~~~~~~------------ir~~~~~a~~~~---~~~~~~iLfIDE-I~ 116 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYAN-----ADVERISAVTSGVKE------------IREAIERARQNR---NAGRRTILFVDE-VH 116 (447)
T ss_dssp STTSSHHHHHHHHHHHTT-----CEEEEEETTTCCHHH------------HHHHHHHHHHHH---HTTCCEEEEEET-TT
T ss_pred CCCCcHHHHHHHHHHHhC-----CCeEEEEeccCCHHH------------HHHHHHHHHHhh---hcCCCcEEEEeC-hh
Confidence 799999999999998763 123334421111111 011222221111 134467888886 43
Q ss_pred hhh---hhhhhhhccCCccccccCCCeeecCCCCeEEEecC-CCC-CCCccchhcccccccCCCCC-CcHHHHHHHhcc
Q psy9553 998 SIW---IENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPH-NID-NASPATVSRNGMVYMSSSGL-DWSPIVAAWLRG 1070 (1282)
Q Consensus 998 ~~W---iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~-dL~-~asPAtvSRcgmvy~~~~~~-~~~~~~~swl~~ 1070 (1282)
..= .+.+..+|++ | .+.+|+-+. +.. ...||..|||.++.+.+-.- ....++...+..
T Consensus 117 ~l~~~~q~~LL~~le~--------~-------~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 117 RFNKSQQDAFLPHIED--------G-------TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CC------CCHHHHHT--------T-------SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHHHHhc--------C-------ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 321 1122223332 2 255666542 322 45689999999988876431 233444554443
No 89
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=59.22 E-value=2.6e+02 Score=32.46 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHH
Q psy9553 262 VRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQ--PRFEQD 339 (1282)
Q Consensus 262 l~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~k--~~f~~~ 339 (1282)
+..+......+...+..-+..+..+.+.-.-|-.-+.+-+++--.....+...|..+...+...+..|.... ..|..
T Consensus 128 v~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~- 206 (450)
T 3r6n_A 128 IAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFE- 206 (450)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-
Confidence 344455666666666666777777777666665556555555556778899999999998877777776532 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9553 340 LADNLAQFRQDKVDYCHEYRTS-GPMMPGLSPRE---ASDRLILFQNRFDGMWRKLQTYQSGEEL 400 (1282)
Q Consensus 340 L~~~~~~f~~~i~~~~~~~~~~-~p~~~~~~~~e---a~~~l~~~~~~l~~l~~~~~~l~~~e~l 400 (1282)
++++...=+.+........ ++ ..+.+... -+.....++..+......+..+.....-
T Consensus 207 ---Da~EaesWL~eke~~l~s~y~~-D~g~d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~ 267 (450)
T 3r6n_A 207 ---EAQSTEAYLKGLQDSIRKKYPC-DKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKK 267 (450)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHSCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHhcccccC-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333232222222221 11 11223322 2344555666777777777777654433
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=58.93 E-value=17 Score=41.52 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeee-ccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRM-NPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~i-npk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~v 996 (1282)
|+||||||+++.|+..+..-+. ..+.++ +|-......-.|.+....-.=....|+..++.+... +...|++|=|-
T Consensus 144 ~~GsGKTTll~~l~~~~~~~~~-g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~---~pd~illdE~~ 219 (372)
T 2ewv_A 144 PTGSGKSTTIASMIDYINQTKS-YHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE---DPDVIFVGEMR 219 (372)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSC-CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS---CCSEEEESCCC
T ss_pred CCCCCHHHHHHHHHhhcCcCCC-cEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh---CcCEEEECCCC
Confidence 7999999999999998765311 122222 221111111112221100000012345566665542 35689999999
Q ss_pred Chhhhh
Q psy9553 997 DSIWIE 1002 (1282)
Q Consensus 997 d~~WiE 1002 (1282)
|+.-++
T Consensus 220 d~e~~~ 225 (372)
T 2ewv_A 220 DLETVE 225 (372)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 886554
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.78 E-value=19 Score=38.87 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=17.0
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.||||||++++|+..+..
T Consensus 33 p~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp STTCSHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCCC
Confidence 7999999999999998754
No 92
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=57.48 E-value=16 Score=41.65 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC-CCccccc-------ceecCCCCccccchHHHHHHHHhccCCCCceE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA-ITAAQMF-------GRLDVATNDWTDGIFSALWRKTLKLKPGDHVW 989 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~-i~~~~Ly-------G~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~W 989 (1282)
|.|+|||++.+.+++.+..-+ ...+..+|.-. .+..+++ |.--+.+..=.+.++..+.+.+. . .+.+.-
T Consensus 52 ~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~v 128 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR-E-RDLYMF 128 (389)
T ss_dssp CTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH-H-TTCCEE
T ss_pred CCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh-h-cCCeEE
Confidence 799999999999988765321 23344566322 2222222 22111111111223333322222 1 234678
Q ss_pred EEEcCC--CChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCC---CCCCccchhcccc--cccCC
Q psy9553 990 LVLDGP--VDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI---DNASPATVSRNGM--VYMSS 1055 (1282)
Q Consensus 990 ivfDG~--vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL---~~asPAtvSRcgm--vy~~~ 1055 (1282)
||+|-. +|+.-.+.|-.++++- +. + -..++.+|+=..+. ....|+..|||+. +.+.|
T Consensus 129 lilDE~~~l~~~~~~~L~~~~~~~-----~~-~---~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 129 LVLDDAFNLAPDILSTFIRLGQEA-----DK-L---GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp EEEETGGGSCHHHHHHHHHHTTCH-----HH-H---SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred EEEECccccchHHHHHHHHHHHhC-----CC-C---CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 999962 2333334443333221 00 0 01255666655554 4567888999994 77765
No 93
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=56.60 E-value=16 Score=39.34 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=25.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
.-|.||||+.-.|+.++. .|..+-....+|-.
T Consensus 36 kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 36 KGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp SSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 346999999999999998 77776666677764
No 94
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=56.50 E-value=3.7e+02 Score=34.70 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHhH-H-------HHHHhhHHHHHHHHhhhhcCCCCCHH
Q psy9553 234 YHREMDYVYAVMNEMDRKLDR--TITDLDDVRMIMELLKRIRDQE-V-------DMELKIEPIEEAYNVITRYDLPVDKE 303 (1282)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~L~~--~p~~leel~e~~~~i~~i~~~~-~-------~le~~i~~i~e~~~lL~~~~~~l~~e 303 (1282)
+......+...+......+.. .+.++..+...+......+... + .++..+..+.....+...-.+ .|++
T Consensus 771 Y~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~kp~r~~ek~~Le~l~~~iqtklrl~~r~~~-~p~~ 849 (1010)
T 1g8x_A 771 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPF-VAPA 849 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC-CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHhcCCCCC-CCcc
Confidence 444555566666655555543 3567777777666655444322 2 222222333333222222111 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9553 304 DLEQVDSLRYTWQKLLARAMTANVLLTT 331 (1282)
Q Consensus 304 ~~~~~~~l~~~w~~l~~~~~~~~~~l~~ 331 (1282)
.. ....+...|..+.....+.+..|.+
T Consensus 850 gl-~~~dL~~~W~~Le~ae~eRe~~L~~ 876 (1010)
T 1g8x_A 850 GL-TPNEIDSTWSALEKAEQEHAEALRI 876 (1010)
T ss_dssp TC-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2445778899998887777666654
No 95
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.42 E-value=9.8 Score=41.01 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc----ccccceecCC-C--CccccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA----AQMFGRLDVA-T--NDWTDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~----~~LyG~~d~~-t--~eW~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|+|+|||++.+.++..+..- ....+.+|..+++. .+|||..... + .....|.+.. + ....+
T Consensus 37 ~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~----a------~~~~l 104 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLSSRW--QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER----A------DGGTL 104 (265)
T ss_dssp CTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH----T------TTSEE
T ss_pred CCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh----c------CCcEE
Confidence 79999999888887654322 23345677776653 4677753210 0 1123444432 1 13478
Q ss_pred EEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC-C------CCCCccchhcccccccC
Q psy9553 991 VLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN-I------DNASPATVSRNGMVYMS 1054 (1282)
Q Consensus 991 vfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d-L------~~asPAtvSRcgmvy~~ 1054 (1282)
++|. .+++.-.+.+..+|++...- .-|.....+.++++|+=+.. + ..-.|+..+|+..+.+.
T Consensus 105 ~lDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 105 FLDELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQ 175 (265)
T ss_dssp EEESGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEE
T ss_pred EEechHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEe
Confidence 9996 23333344556677766532 33444456678888886553 1 12457888898754443
No 96
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.19 E-value=29 Score=40.62 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=61.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.++..+. ....+.+++- ++.+.+-.. ....+..+++.+.. ....-|++|- +|
T Consensus 175 ppGtGKT~lA~aia~~~~----~~~~~~v~~~-----~l~~~~~g~----~~~~~~~~f~~a~~---~~~~vl~iDE-id 237 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEAN----NSTFFSISSS-----DLVSKWLGE----SEKLVKNLFQLARE---NKPSIIFIDE-ID 237 (444)
T ss_dssp STTSSHHHHHHHHHHHCC----SSEEEEECCC------------------CCCTHHHHHHHHHH---SCSEEEEESC-TT
T ss_pred CCCCCHHHHHHHHHHHcC----CCCEEEEeHH-----HHHhhhcch----HHHHHHHHHHHHHH---cCCeEEEEec-hH
Confidence 799999999998887651 1233445543 333322111 12344555554432 2245778884 55
Q ss_pred hhhh-------hhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc-ccccCCCC
Q psy9553 998 SIWI-------ENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG-MVYMSSSG 1057 (1282)
Q Consensus 998 ~~Wi-------E~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~~ 1057 (1282)
..-- +.++.++ |.+|+.-.|-. .-+.++.+|.=+.......||..+||. .+++...+
T Consensus 238 ~l~~~~~~~~~~~~~~~~--~~lL~~l~~~~-~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 238 SLCGSRSENESEAARRIK--TEFLVQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp TTCCCSSCCCCGGGHHHH--HHHHTTTTCSS-CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCC
T ss_pred hhccCCCCccccHHHHHH--HHHHHHHhCcc-cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcC
Confidence 4411 0011111 22333332211 123567777777766777899999997 66676443
No 97
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=55.60 E-value=3.1 Score=44.46 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=31.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|.||||+.-.|+.++.+.|.++-....+|- =+...++|.
T Consensus 9 GGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~ 48 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGL 48 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCC
Confidence 3689999999999999988877777778884 556666664
No 98
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.22 E-value=7.2 Score=40.05 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
-|+||||+.-.|+.++...|.++-....+|..
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 36999999999999999888777666677653
No 99
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=53.60 E-value=8 Score=44.28 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~v 996 (1282)
|+|+|||++.+.+++++ +. ..+.+|.-.++...++|. + ..+.+..+++..... ......-+++|- +
T Consensus 80 p~GtGKT~la~~la~~l---~~--~~~~~~~~~~~~~~~~g~------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDE-i 146 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHL---DI--PIAISDATSLTEAGYVGE------D-VENILTRLLQASDWNVQKAQKGIVFIDE-I 146 (376)
T ss_dssp CTTSSHHHHHHHHHHHT---TC--CEEEEEGGGCC---------------CTHHHHHHHHHTTTCHHHHTTSEEEEET-G
T ss_pred CCCCCHHHHHHHHHHHh---CC--CEEEecchhhhhcCcCCc------c-HHHHHHHHHhhccchhhhcCCeEEEEcC-H
Confidence 79999999999999876 32 344566655555455553 1 124455555432100 001235677775 5
Q ss_pred Chh-----------------hhhhhhhhccCCccccc-cCCCe--------eecCCCCeEEEecCCCCCCCccchhcccc
Q psy9553 997 DSI-----------------WIENLNSVLDDNRTLTL-ANGDR--------LSMALAVKIIFEPHNIDNASPATVSRNGM 1050 (1282)
Q Consensus 997 d~~-----------------WiE~mnsvlDdnk~L~L-~nger--------i~l~~~~~~~FEv~dL~~asPAtvSRcgm 1050 (1282)
|.. -.+.|..+||+. .+++ ..|.+ +-.+.|+.+|+-. +.....|+..+|+..
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~-~~~~l~~~l~~R~~~ 224 (376)
T 1um8_A 147 DKISRLSENRSITRDVSGEGVQQALLKIVEGS-LVNIPPKGGRKHPEGNFIQIDTSDILFICAG-AFDGLAEIIKKRTTQ 224 (376)
T ss_dssp GGC--------------CHHHHHHHHHHHHCC-EEC---------------CEECTTCEEEEEE-CCTTHHHHTTTSCSS
T ss_pred HHHhhhcCCCceecccchHHHHHHHHHHhhcc-ceecccccccccCCcceEEEecCCeEEEecC-CHHHHHHHHHHHhcc
Confidence 443 344556666643 2222 22332 2344556666554 355566788888875
Q ss_pred cccC
Q psy9553 1051 VYMS 1054 (1282)
Q Consensus 1051 vy~~ 1054 (1282)
.+++
T Consensus 225 ~~~g 228 (376)
T 1um8_A 225 NVLG 228 (376)
T ss_dssp CCCS
T ss_pred cccC
Confidence 4443
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.25 E-value=22 Score=40.27 Aligned_cols=18 Identities=33% Similarity=0.104 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+|+|||++.+.+++.+.
T Consensus 78 ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 78 QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 899999999999998874
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.98 E-value=9.8 Score=39.39 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i 951 (1282)
|.||||||+.+.|+..+...|...-...+++.-+
T Consensus 30 ~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 7999999999999998874332233333444433
No 102
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=52.38 E-value=11 Score=41.19 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=71.5
Q ss_pred hHHhHHHHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCc
Q psy9553 894 KFETLITIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATND 966 (1282)
Q Consensus 894 k~~~Li~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~e 966 (1282)
.+...+.......+..+.+|- .++ |+|+|||++.+.++..+. ...+.+++ .++++.+-.
T Consensus 28 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~-----~~~~~~~~~---- 93 (285)
T 3h4m_A 28 EIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVG-----SELVKKFIG---- 93 (285)
T ss_dssp HHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEG-----GGGCCCSTT----
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh-----HHHHHhccc----
Confidence 344444444556677777642 333 899999999999887652 23333443 334333211
Q ss_pred cccchHHHHHHHHhccCCCCceEEEEcCCCChh--------------hhhhhhhhccCCccccccCCCeeecCCCCeEEE
Q psy9553 967 WTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSI--------------WIENLNSVLDDNRTLTLANGDRLSMALAVKIIF 1032 (1282)
Q Consensus 967 W~dG~~~~~~r~~~~~~~~~~~WivfDG~vd~~--------------WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~F 1032 (1282)
-..+.+..+++.+.. ....-|++|- +|.. ..+.++.+|+.- +.+.-++++.+|.
T Consensus 94 ~~~~~~~~~~~~~~~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 94 EGASLVKDIFKLAKE---KAPSIIFIDE-IDAIAAKRTDALTGGDREVQRTLMQLLAEM--------DGFDARGDVKIIG 161 (285)
T ss_dssp HHHHHHHHHHHHHHH---TCSEEEEEET-THHHHBCCSSSCCGGGGHHHHHHHHHHHHH--------HTTCSSSSEEEEE
T ss_pred hHHHHHHHHHHHHHH---cCCeEEEEEC-HHHhcccCccccCCccHHHHHHHHHHHHHh--------hCCCCCCCEEEEE
Confidence 112233334443322 2246788894 5443 334444444320 0011234566777
Q ss_pred ecCCCCCCCccchh--cccc-cccC
Q psy9553 1033 EPHNIDNASPATVS--RNGM-VYMS 1054 (1282)
Q Consensus 1033 Ev~dL~~asPAtvS--Rcgm-vy~~ 1054 (1282)
=+.......||..+ |++. +++.
T Consensus 162 ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 162 ATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp ECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred eCCCchhcCHHHcCCCcCCeEEEEC
Confidence 66666667788888 8874 4454
No 103
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=51.56 E-value=9.8 Score=41.87 Aligned_cols=33 Identities=6% Similarity=-0.111 Sum_probs=27.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
.-|.||||+.-.|+.++...|.++-....+|-.
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 457999999999999999888777666777764
No 104
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.36 E-value=11 Score=44.91 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.6
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCceeeeeccCCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE--EPHREMRMNPKAITA 953 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~--~~~~~~~inpk~i~~ 953 (1282)
++|||||+++++|..++-... ...+.+.++||....
T Consensus 175 ~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el 212 (512)
T 2ius_A 175 TTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLEL 212 (512)
T ss_dssp CTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGG
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhh
Confidence 799999999999988654332 245778899998544
No 105
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.61 E-value=6.1 Score=43.61 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||+.+.|++.
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 6789999999998874
No 106
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=49.84 E-value=12 Score=37.54 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=23.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
+.||||||+...|..++...|..+.+....|
T Consensus 12 ~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 5689999999999999987666555554455
No 107
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=49.81 E-value=62 Score=37.58 Aligned_cols=30 Identities=13% Similarity=-0.128 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeec
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMN 947 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~in 947 (1282)
|.|+||||+...|+..+...|..+.+...+
T Consensus 105 ~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 789999999999999998877655444333
No 108
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=49.10 E-value=13 Score=37.41 Aligned_cols=32 Identities=22% Similarity=0.077 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
|.|+||||+++.|...+...|..+-....+|.
T Consensus 14 ~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57899999999999988776655444444444
No 109
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=48.63 E-value=13 Score=41.37 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=12.4
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
+.+++|+||||||
T Consensus 152 ~~~lll~G~~GtG 164 (308)
T 2qgz_A 152 QKGLYLYGDMGIG 164 (308)
T ss_dssp CCEEEEECSTTSS
T ss_pred CceEEEECCCCCC
Confidence 7899999999999
No 110
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=47.68 E-value=12 Score=39.18 Aligned_cols=17 Identities=18% Similarity=-0.023 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||+|..+.|++.+
T Consensus 37 pPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999999876
No 111
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.43 E-value=23 Score=37.97 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|++.+.
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 789999999999988763
No 112
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.31 E-value=25 Score=41.11 Aligned_cols=84 Identities=14% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhhC---CCCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch
Q psy9553 899 ITIHVHQRDIFDILG---PEEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI 971 (1282)
Q Consensus 899 i~i~vh~rDiv~~lG---Peni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~ 971 (1282)
|..-..+.+....+| |-.+ |+|||||.+.++++..+.. ..+.++ ..+|.+.+ -|-
T Consensus 225 V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs-----~s~L~sk~--------vGe 286 (467)
T 4b4t_H 225 VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVI-----GSELVQKY--------VGE 286 (467)
T ss_dssp THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEE-----GGGGCCCS--------SSH
T ss_pred HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEE-----hHHhhccc--------CCH
Confidence 344456677888775 2333 8999999998888876532 233333 33343322 133
Q ss_pred HHHHHHHHhccCCCCceEEEEcCCCChhh
Q psy9553 972 FSALWRKTLKLKPGDHVWLVLDGPVDSIW 1000 (1282)
Q Consensus 972 ~~~~~r~~~~~~~~~~~WivfDG~vd~~W 1000 (1282)
-.+.+|.+........--|||.-.+|+.-
T Consensus 287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 287 GARMVRELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCTTTS
T ss_pred HHHHHHHHHHHHHhcCCceEeeccccccc
Confidence 34555555432222223588877788764
No 113
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=46.98 E-value=5.1 Score=43.99 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
-|.||||+.-.|+.++...|..+-.+..+|..-+...++|
T Consensus 14 GGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhC
Confidence 4689999999999999998887777778883333334443
No 114
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=46.35 E-value=7.4 Score=38.73 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|+..+.
T Consensus 12 ~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999988753
No 115
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.19 E-value=16 Score=40.79 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCcccccchhHHHHHHHHHHHHhcC---CcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAKQE---HAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~~~---~~~ll~G~~Gt~ 1282 (1282)
|.+++-...-..+...++......+ .++||+||||||
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtG 67 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLG 67 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSS
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCC
Confidence 4444443333333444444443223 699999999999
No 116
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=46.09 E-value=6.5 Score=41.43 Aligned_cols=38 Identities=24% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCCChhHHHHHHHHHHHh-cCCCceeeeeccCCCCccc
Q psy9553 918 QWLTRKTTCIHTLMAALSE-VEEPHREMRMNPKAITAAQ 955 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~-~~~~~~~~~inpk~i~~~~ 955 (1282)
+.|+||||..+.|++.+.. .|.++...+=.|-.-+.++
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE 67 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH
Confidence 6789999999999999987 7755544345776434344
No 117
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.84 E-value=62 Score=34.45 Aligned_cols=17 Identities=18% Similarity=-0.083 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+|+|||++.+.++..+
T Consensus 52 ~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 89999999999998865
No 118
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.69 E-value=9 Score=38.72 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||++++|+..+.
T Consensus 8 ~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CTTSSHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999999874
No 119
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=45.57 E-value=17 Score=41.01 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
+.|+||||+++.|+.++...|..+.+...+|-+
T Consensus 64 ~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 64 TPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 788999999999999988777665555566643
No 120
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=45.39 E-value=19 Score=40.72 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=58.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.++..+. ...+.+++. +|++.+-. + ....+..++..+.. ....-|++|- +|
T Consensus 92 ppGtGKT~la~ala~~~~-----~~~~~v~~~-----~l~~~~~g---~-~~~~~~~~f~~a~~---~~~~vl~iDE-id 153 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEAN-----STFFSVSSS-----DLVSKWMG---E-SEKLVKQLFAMARE---NKPSIIFIDQ-VD 153 (355)
T ss_dssp STTSCHHHHHHHHHHHHT-----CEEEEEEHH-----HHHSCC-------CHHHHHHHHHHHHH---TSSEEEEEEC-GG
T ss_pred CCCCcHHHHHHHHHHHhC-----CCEEEeeHH-----HHhhhhcc---h-HHHHHHHHHHHHHH---cCCeEEEEec-hH
Confidence 899999999999988763 233444433 34333211 1 11223333433321 2346788884 66
Q ss_pred hhhhhh-------hhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc-ccccCCC
Q psy9553 998 SIWIEN-------LNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG-MVYMSSS 1056 (1282)
Q Consensus 998 ~~WiE~-------mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~ 1056 (1282)
..--.. ...+ -|.+|++-+|-. .-+.++.+|.=+.......||..+||. .+|+.+.
T Consensus 154 ~l~~~r~~~~~~~~~~~--~~~ll~~l~~~~-~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P 217 (355)
T 2qp9_X 154 ALTGTRGEGESEASRRI--KTELLVQMNGVG-NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 217 (355)
T ss_dssp GGTC------CTHHHHH--HHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCC
T ss_pred hhcccCCCCcchHHHHH--HHHHHHHhhccc-ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCc
Confidence 543110 0000 022222222210 113456666666666667899999995 4566643
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=45.05 E-value=9.6 Score=37.70 Aligned_cols=18 Identities=22% Similarity=0.029 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 688999999999988763
No 122
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.71 E-value=36 Score=37.51 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc----ccccceecC-CCCcc--ccchHHHHHHHHhccCCCCceEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA----AQMFGRLDV-ATNDW--TDGIFSALWRKTLKLKPGDHVWL 990 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~----~~LyG~~d~-~t~eW--~dG~~~~~~r~~~~~~~~~~~Wi 990 (1282)
|+|+|||++.+.+.......+ ...+.+|.-+++. .+|||+-.. .|+.+ ..|.|. .+. ..-+
T Consensus 33 e~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~----~a~------~g~L 100 (304)
T 1ojl_A 33 DSGTGKELVARALHACSARSD--RPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV----EAD------GGTL 100 (304)
T ss_dssp CTTSCHHHHHHHHHHHSSCSS--SCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHH----HHT------TSEE
T ss_pred CCCchHHHHHHHHHHhCcccC--CCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHH----hcC------CCEE
Confidence 799999998888877543322 2345678777764 578886421 12221 233332 221 2468
Q ss_pred EEcC--CCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCC-CC------CCCccchhcccccccC
Q psy9553 991 VLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHN-ID------NASPATVSRNGMVYMS 1054 (1282)
Q Consensus 991 vfDG--~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~d-L~------~asPAtvSRcgmvy~~ 1054 (1282)
++|- .+.+.--..|-.+|++...- +-|..-..+.++++|+=+.. |. .-.|+..+|+..+.+.
T Consensus 101 ~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 101 FLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp EEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEE
T ss_pred EEeccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEe
Confidence 9995 33334445566777776553 33444566788999986553 11 1246677787665543
No 123
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.71 E-value=27 Score=44.08 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=58.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC-----ceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccC-CCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP-----HREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLK-PGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~-----~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~-~~~~~Wiv 991 (1282)
|+|+|||++.+.|+..+..-+.+ ...+.++..++..+. . ..|-+...++.+.... ......++
T Consensus 215 ~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~----------~-~~g~~e~~l~~~~~~~~~~~~~iL~ 283 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT----------K-YRGDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC----------C-CSSCHHHHHHHHHHHHSSSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccc----------c-ccchHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999988653322 233334433332111 0 1233444444433221 12346778
Q ss_pred EcCCCChhh------------hhhhhhhccCCccccccCCCeeecCCCCeEEEecC-----CCCCCCccchhcccccccC
Q psy9553 992 LDGPVDSIW------------IENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPH-----NIDNASPATVSRNGMVYMS 1054 (1282)
Q Consensus 992 fDG~vd~~W------------iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~-----dL~~asPAtvSRcgmvy~~ 1054 (1282)
+|. +|..- ..-|+.+|+.+ .+++|.-+. ..-...||..+||..|.++
T Consensus 284 IDE-i~~l~~~~~~~~~~~~~~~~L~~~l~~~---------------~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~ 347 (758)
T 1r6b_X 284 IDE-IHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347 (758)
T ss_dssp ETT-TTTTTTSCCSSSCHHHHHHHHSSCSSSC---------------CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECC
T ss_pred Eec-hHHHhhcCCCCcchHHHHHHHHHHHhCC---------------CeEEEEEeCchHHhhhhhcCHHHHhCceEEEcC
Confidence 885 44331 12233444333 334444433 1233458999999999988
Q ss_pred CCC
Q psy9553 1055 SSG 1057 (1282)
Q Consensus 1055 ~~~ 1057 (1282)
+-.
T Consensus 348 ~p~ 350 (758)
T 1r6b_X 348 EPS 350 (758)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 124
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=44.57 E-value=13 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcC---CcEEEecCCCCC
Q psy9553 1259 IDYLVNCIAKQE---HAVLLIGESGKL 1282 (1282)
Q Consensus 1259 ~~~l~~~~~~~~---~~~ll~G~~Gt~ 1282 (1282)
...+.+.+.... +++||+||||||
T Consensus 56 l~~l~~~~~~~~~~~~~vLl~GppGtG 82 (368)
T 3uk6_A 56 AGVVLEMIREGKIAGRAVLIAGQPGTG 82 (368)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESTTSS
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCC
Confidence 445555555433 479999999999
No 125
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=44.50 E-value=9.9 Score=40.85 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccc
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFG 958 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG 958 (1282)
-|.||||+.-.|+.++...|.++-++..+|.+ +....+|
T Consensus 16 GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~ 54 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLG 54 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTT
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhC
Confidence 35899999999999999888777666677853 3444444
No 126
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=44.21 E-value=13 Score=37.40 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=18.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|.||||||+.+.|++.+...|.
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~g~ 30 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCc
Confidence 6789999999999999875443
No 127
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=44.04 E-value=14 Score=44.35 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCC--CceeeeeccCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE--PHREMRMNPKAIT 952 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~--~~~~~~inpk~i~ 952 (1282)
.+|||||+++++|...+-.... ..+.+.|+||...
T Consensus 222 ~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~e 258 (574)
T 2iut_A 222 TTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLE 258 (574)
T ss_dssp CTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhh
Confidence 7899999999999888765443 3678899999743
No 128
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=43.79 E-value=18 Score=43.93 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=46.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeee------------eccCCCCcccccceecCCCCccccchHHHHHHHHhccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMR------------MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPG 985 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~------------inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~ 985 (1282)
|+|+||||+++.+..++...|..+.... +.-.+.|...|.|... + .|.. ......
T Consensus 212 ~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~--~-~~~~----------~~~~~~ 278 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP--Q-GFRH----------NHLEPA 278 (574)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET--T-EESC----------SSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc--c-hhhh----------hhcccc
Confidence 6999999999999998877664432211 2223455566666432 1 1111 011222
Q ss_pred CceEEEEc--CCCChhhhhhhhhhc
Q psy9553 986 DHVWLVLD--GPVDSIWIENLNSVL 1008 (1282)
Q Consensus 986 ~~~WivfD--G~vd~~WiE~mnsvl 1008 (1282)
....||.| +.+|..+.+.|-..+
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~ 303 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAV 303 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTS
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhC
Confidence 35689999 578888777664443
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=43.78 E-value=9 Score=38.63 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|++.+
T Consensus 13 psGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 88999999999998865
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.39 E-value=10 Score=38.95 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.||||||+.+.|++.+..
T Consensus 33 ~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999863
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=42.52 E-value=9.6 Score=38.29 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.||||||+.+.|...+..-|...-.+.+++..
T Consensus 10 ~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 578999999999999987654333344455544
No 132
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=42.43 E-value=9.5 Score=39.09 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|+..+
T Consensus 15 p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 78999999999998764
No 133
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=42.20 E-value=11 Score=38.98 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|+..+.
T Consensus 14 ~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 14 GTASGKTTLAQALARTLG 31 (211)
T ss_dssp STTSSHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 688999999999998774
No 134
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.02 E-value=10 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+.+.|+..+.
T Consensus 9 psGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSSSHHHHHHHHHHHCG
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 789999999999998764
No 135
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=41.88 E-value=9 Score=38.26 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 678999999999998763
No 136
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.81 E-value=3.6e+02 Score=28.94 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 322 AMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHE 357 (1282)
Q Consensus 322 ~~~~~~~l~~~k~~f~~~L~~~~~~f~~~i~~~~~~ 357 (1282)
+......+...-+.|+..+.-.++.|+..+....++
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~ 242 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQ 242 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444433333
No 137
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.58 E-value=16 Score=37.48 Aligned_cols=23 Identities=26% Similarity=0.094 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.||||||+.+.|+..+...+.+
T Consensus 30 ~~GsGKstl~~~l~~~~~~~~~~ 52 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTLREQGIS 52 (201)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHhhcCCe
Confidence 78999999999999988655544
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=41.36 E-value=9.9 Score=41.20 Aligned_cols=14 Identities=29% Similarity=0.135 Sum_probs=12.3
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+++||+||||||
T Consensus 63 ~~~~vLl~G~~GtG 76 (272)
T 1d2n_A 63 PLVSVLLEGPPHSG 76 (272)
T ss_dssp SEEEEEEECSTTSS
T ss_pred CCeEEEEECCCCCc
Confidence 44689999999999
No 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.19 E-value=11 Score=45.22 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCcccccchhHHHHHHHHHHHHh---------------cCCcEEEecCCCCC
Q psy9553 1246 YSSILVPIADNVRIDYLVNCIAK---------------QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1246 ~~~~~vpt~dt~r~~~l~~~~~~---------------~~~~~ll~G~~Gt~ 1282 (1282)
|.+++-......+...++..+.. ..+++||+||||||
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtG 89 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 89 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCC
Confidence 55666555444444444444332 23799999999999
No 140
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=40.82 E-value=12 Score=38.49 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999999876
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=40.42 E-value=97 Score=36.00 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|.|+||||+...|+.++..-|..+-+...+|
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7889999999999999987776554444444
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=40.39 E-value=9.2 Score=42.23 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=12.2
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
.+.|+||+||||||
T Consensus 66 ~~~~vll~G~~GtG 79 (309)
T 3syl_A 66 PTLHMSFTGNPGTG 79 (309)
T ss_dssp CCCEEEEEECTTSS
T ss_pred CCceEEEECCCCCC
Confidence 45589999999999
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=40.23 E-value=13 Score=37.54 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|++.+...|
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 678999999999999887544
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=39.96 E-value=12 Score=38.34 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+++.|..-+.
T Consensus 12 psGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhhCc
Confidence 789999999999988653
No 145
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=39.92 E-value=71 Score=28.68 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 256 ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVL 328 (1282)
Q Consensus 256 p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~ 328 (1282)
+.++..+..++.....+.......+..+..+...-.-|..-+..-++.-......+...|..+...+.+....
T Consensus 32 g~~l~~v~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~ 104 (107)
T 2spc_A 32 ANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSR 104 (107)
T ss_dssp HCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666655556666666554444432221112222344556667777777766655443
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=39.48 E-value=13 Score=37.41 Aligned_cols=17 Identities=18% Similarity=-0.085 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999876
No 147
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=39.31 E-value=13 Score=38.16 Aligned_cols=17 Identities=24% Similarity=0.006 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999999876
No 148
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=39.15 E-value=4.5e+02 Score=29.34 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcC-CC
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYD-LP 299 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~-~~ 299 (1282)
.....+.+.+.+.+..-++.+.+.++++...+...+.+ +.+..+..++.+...+...+.+.++...-|.+.. ..
T Consensus 180 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~-----~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 254 (363)
T 2iub_A 180 YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEK-----ETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL 254 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34556777888888888888999999988888776542 2344555666777777777888888877776543 23
Q ss_pred CCHHH
Q psy9553 300 VDKED 304 (1282)
Q Consensus 300 l~~e~ 304 (1282)
++++.
T Consensus 255 ~~~~~ 259 (363)
T 2iub_A 255 IEKET 259 (363)
T ss_dssp CHHHH
T ss_pred CCHHH
Confidence 44443
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=39.13 E-value=10 Score=41.85 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.3
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+..++++||+||||||
T Consensus 46 ~~~~~~vLL~Gp~GtG 61 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCG 61 (301)
T ss_dssp CCCCSEEEEECSSSSS
T ss_pred CCCCceEEEECCCCcC
Confidence 5677899999999999
No 150
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=38.76 E-value=13 Score=38.06 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999887
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=38.73 E-value=10 Score=38.38 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||+.+.|+..
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 7899999999998774
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.60 E-value=13 Score=36.97 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 689999999999998763
No 153
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=38.40 E-value=34 Score=38.41 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|.|+||||+++.|...+..-+....+.-.+|.+
T Consensus 63 ~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 63 VPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 789999999999999876555444444455543
No 154
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=38.38 E-value=19 Score=36.16 Aligned_cols=23 Identities=22% Similarity=-0.052 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
+.||||||+.+.|++.+...|..
T Consensus 21 ~~GsGKsT~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQKEGYR 43 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCe
Confidence 67899999999999998765544
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=38.33 E-value=29 Score=38.61 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=25.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----CceeeeeccCCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----PHREMRMNPKAITA 953 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~~~~~~inpk~i~~ 953 (1282)
|+|+|||++.+.+++.+..... ......||--.++.
T Consensus 53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 8999999999999998865322 23455688666543
No 156
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=38.21 E-value=4e+02 Score=28.45 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCC-C
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDL-P 299 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~-~ 299 (1282)
.....+.+.+.+.+..-++.+...++++...+...|.+ +.+..+..++.....+...+.+..+....|.+... .
T Consensus 156 ~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~-----~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~ 230 (280)
T 4egw_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDR-----EVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc
Confidence 34456777778888888888888888888888776542 23344455667777777778888888877766543 4
Q ss_pred CCHHHHHHHHHH
Q psy9553 300 VDKEDLEQVDSL 311 (1282)
Q Consensus 300 l~~e~~~~~~~l 311 (1282)
++++....+..+
T Consensus 231 ~~~~~~~~l~Dv 242 (280)
T 4egw_A 231 TTKEDRENFEDL 242 (280)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566654444333
No 157
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.18 E-value=12 Score=36.96 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhCCCCCCCCCChhHHHHHHHHHH
Q psy9553 902 HVHQRDIFDILGPEEVQWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 902 ~vh~rDiv~~lGPeni~~~~GKt~~~~~L~~a~ 934 (1282)
.++.-+++--+| |.|+||||+.++|+..+
T Consensus 29 ~i~~Ge~v~L~G----~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNG----DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEEC----STTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEEC----CCCCCHHHHHHHHHHhC
Confidence 334444444446 68999999999999987
No 158
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=38.10 E-value=12 Score=38.54 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998865
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=38.08 E-value=14 Score=36.98 Aligned_cols=18 Identities=17% Similarity=-0.073 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+.+.++..+.
T Consensus 46 ~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999999885
No 160
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.02 E-value=22 Score=35.96 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=24.1
Q ss_pred CceEEEEc--CCCChhhhhhhhhhccCCccccc
Q psy9553 986 DHVWLVLD--GPVDSIWIENLNSVLDDNRTLTL 1016 (1282)
Q Consensus 986 ~~~WivfD--G~vd~~WiE~mnsvlDdnk~L~L 1016 (1282)
....|++| ..+++.|++-++.+.|++..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~ 108 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFC 108 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEE
Confidence 45789999 46677899999999988765544
No 161
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=37.99 E-value=20 Score=38.72 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcC----CcEEEecCCCCC
Q psy9553 1258 RIDYLVNCIAKQE----HAVLLIGESGKL 1282 (1282)
Q Consensus 1258 r~~~l~~~~~~~~----~~~ll~G~~Gt~ 1282 (1282)
.....+..+++.. ..++|+||||||
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtG 116 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTG 116 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCC
Confidence 4444566777754 359999999999
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.98 E-value=14 Score=38.65 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998865
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=37.67 E-value=12 Score=40.19 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.|
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 79999999999999765
No 164
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=37.47 E-value=14 Score=36.66 Aligned_cols=17 Identities=12% Similarity=-0.005 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 68899999999998875
No 165
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=37.25 E-value=1.2e+02 Score=31.21 Aligned_cols=100 Identities=10% Similarity=0.167 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCC-CCCHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDRTI-TDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDL-PVDKEDLEQVDS 310 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~~p-~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~-~l~~e~~~~~~~ 310 (1282)
.+...+..+...+.+....|..++ .++..+..++.....+...+...+..+..+.+.-.-|..-+. .-.......+..
T Consensus 112 ~F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~~~~~~~a~~i~~~~~~ 191 (218)
T 3edu_A 112 RYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQE 191 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHH
Confidence 355667777777777776664322 244445555555556666666667777777665544433221 011122234667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy9553 311 LRYTWQKLLARAMTANVLLTTM 332 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l~~~ 332 (1282)
+...|..+...+......|+..
T Consensus 192 l~~~W~~L~~~~~~R~~~L~~a 213 (218)
T 3edu_A 192 VSAAWQALLDACAGRRTQLVDT 213 (218)
T ss_dssp HHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888998888777666655543
No 166
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=37.09 E-value=18 Score=36.51 Aligned_cols=24 Identities=21% Similarity=-0.121 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
+.||||||+.+.|++.+...|.++
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeE
Confidence 578999999999999886655543
No 167
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.05 E-value=11 Score=44.07 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=12.2
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+-+||+||||||
T Consensus 214 ~prGvLLyGPPGTG 227 (434)
T 4b4t_M 214 APKGALMYGPPGTG 227 (434)
T ss_dssp CCCEEEEESCTTSS
T ss_pred CCCeeEEECcCCCC
Confidence 45679999999999
No 168
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=37.03 E-value=12 Score=41.08 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.1
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
....|+||+||||||
T Consensus 48 ~~~~~vll~G~~GtG 62 (310)
T 1ofh_A 48 VTPKNILMIGPTGVG 62 (310)
T ss_dssp CCCCCEEEECCTTSS
T ss_pred CCCceEEEECCCCCC
Confidence 356799999999999
No 169
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=36.63 E-value=3.5e+02 Score=27.42 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Q psy9553 209 EQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPI 286 (1282)
Q Consensus 209 ~~lK~~L~~~~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i 286 (1282)
......|...+..-...|. .| -.+...+..+...+.+-...+... |.++.++..+......+.......+..+..+
T Consensus 87 ~~~~~~L~~~a~~R~~~L~-~L-~~f~~~~~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l 164 (210)
T 3pdy_A 87 DLQYAKLLNSSKARLRSLE-SL-HSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKEL 164 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9553 287 EEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTM 332 (1282)
Q Consensus 287 ~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~ 332 (1282)
...-.-|-.-+.+-++.-......+...|..+...+...+..|.+.
T Consensus 165 ~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~hLk~~ 210 (210)
T 3pdy_A 165 QNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 210 (210)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 170
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=36.54 E-value=24 Score=38.92 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
.-|.||||+.-.|+.++...|..+-....+|..
T Consensus 49 KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 49 KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 356999999999999999988888777888854
No 171
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=36.50 E-value=12 Score=42.42 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=11.7
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
..++||+||||||
T Consensus 51 ~~~vll~GppGtG 63 (363)
T 3hws_A 51 KSNILLIGPTGSG 63 (363)
T ss_dssp CCCEEEECCTTSS
T ss_pred CCeEEEECCCCCC
Confidence 5689999999999
No 172
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.31 E-value=15 Score=37.00 Aligned_cols=17 Identities=35% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 67899999999999876
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=36.24 E-value=11 Score=41.06 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHH-HhcCCcEEEecCCCCC
Q psy9553 1258 RIDYLVNCI-AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1258 r~~~l~~~~-~~~~~~~ll~G~~Gt~ 1282 (1282)
++..+...+ +...+++||+||||||
T Consensus 38 ~~~~~~~~~~~~~~~~~ll~G~~GtG 63 (285)
T 3h4m_A 38 KHPELFEKVGIEPPKGILLYGPPGTG 63 (285)
T ss_dssp HCHHHHHHHCCCCCSEEEEESSSSSS
T ss_pred hCHHHHHhcCCCCCCeEEEECCCCCc
Confidence 333444444 4678899999999999
No 174
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=36.19 E-value=15 Score=39.07 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.++|+..+
T Consensus 33 ~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELL 49 (245)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999999877
No 175
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=36.18 E-value=14 Score=38.64 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 79999999999998854
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=36.05 E-value=14 Score=37.32 Aligned_cols=15 Identities=27% Similarity=0.058 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.|+||||+.+.|+.
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 689999999999976
No 177
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=36.02 E-value=3.7e+02 Score=27.79 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhH-----HHHHHhhHHHHHHHHhhhhcCCCCCHHHH
Q psy9553 231 RKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQE-----VDMELKIEPIEEAYNVITRYDLPVDKEDL 305 (1282)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~-----~~le~~i~~i~e~~~lL~~~~~~l~~e~~ 305 (1282)
.+.+..+..++...+++....+...|.+.+.+..+...+..++... ..+..-...++..++.+.+-...++.+.+
T Consensus 9 l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~ 88 (225)
T 2lp4_A 9 YQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDII 88 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 3445556666777777777888999999988888888888887743 34455555666667777777777887765
Q ss_pred HHHH
Q psy9553 306 EQVD 309 (1282)
Q Consensus 306 ~~~~ 309 (1282)
..+.
T Consensus 89 ~ll~ 92 (225)
T 2lp4_A 89 NLFL 92 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 178
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.95 E-value=16 Score=36.78 Aligned_cols=17 Identities=24% Similarity=-0.035 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999876
No 179
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=35.45 E-value=4.5e+02 Score=28.25 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9553 262 VRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTM 332 (1282)
Q Consensus 262 l~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~~~ 332 (1282)
+.........+...+..-+..++.+.+.-.-|..-+.+-.++-......+...|..+..........|+..
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a 113 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 113 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666677777777776666665554444555667889999999998888877777653
No 180
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=35.36 E-value=22 Score=37.38 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC---ceeeeeccCCCCcccccceecCCCCcc-------------------------cc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP---HREMRMNPKAITAAQMFGRLDVATNDW-------------------------TD 969 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~---~~~~~inpk~i~~~~LyG~~d~~t~eW-------------------------~d 969 (1282)
|+|||||+++....-........ ....++.|--....+.+..+-....+= |.
T Consensus 84 ~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 84 ATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTV 163 (235)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEH
T ss_pred CCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECH
Q ss_pred chHHHHHHHHhccCCCCceEEEEc
Q psy9553 970 GIFSALWRKTLKLKPGDHVWLVLD 993 (1282)
Q Consensus 970 G~~~~~~r~~~~~~~~~~~WivfD 993 (1282)
|.+-..++. .-..-++||+|
T Consensus 164 g~l~~~l~~----~l~~~~~lVlD 183 (235)
T 3llm_A 164 GVLLRKLEA----GIRGISHVIVD 183 (235)
T ss_dssp HHHHHHHHH----CCTTCCEEEEC
T ss_pred HHHHHHHHh----hhcCCcEEEEE
No 181
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=35.34 E-value=3.2e+02 Score=26.51 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy9553 233 KYHREMDYVYAVMNEMDRKLDR-TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSL 311 (1282)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~L~~-~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l 311 (1282)
.+...++.+...+.+....+.. .+.++..+...+.....+...+...+..+..+...-.-|..-+..-++.....+..+
T Consensus 60 ~F~~d~~el~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL 139 (161)
T 3lbx_A 60 VFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEEL 139 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3444555555555554443332 223444555555556666666666666677776665555444433344445668889
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy9553 312 RYTWQKLLARAMTANVLLT 330 (1282)
Q Consensus 312 ~~~w~~l~~~~~~~~~~l~ 330 (1282)
...|..+..........|.
T Consensus 140 ~~~W~~L~~~~~~R~~~L~ 158 (161)
T 3lbx_A 140 RHLWDLLLELTLEKGDQLL 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888777665554
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=35.32 E-value=16 Score=38.90 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 35 ~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 799999999999998763
No 183
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=35.28 E-value=2.2e+02 Score=30.81 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Q psy9553 226 IAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRI 272 (1282)
Q Consensus 226 l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i 272 (1282)
.++.+.+.+....+...+.++++.+.|...|.++..+.++...+++.
T Consensus 11 ~ld~v~~~~~~~a~~~~~~v~~ai~~l~~~~~np~~l~~~Q~~~~~~ 57 (305)
T 3zqe_A 11 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEY 57 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34556777778888888889999999999999999998888777653
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=34.87 E-value=13 Score=40.65 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.3
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
...+++||+||||||
T Consensus 52 ~~~~~vll~Gp~GtG 66 (297)
T 3b9p_A 52 APAKGLLLFGPPGNG 66 (297)
T ss_dssp CCCSEEEEESSSSSC
T ss_pred CCCCeEEEECcCCCC
Confidence 457899999999999
No 185
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.59 E-value=12 Score=42.95 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.3
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+...+-+||.||||||
T Consensus 179 i~~prGvLL~GPPGTG 194 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTG 194 (405)
T ss_dssp CCCCCCEEEESCSSSS
T ss_pred CCCCCceEEeCCCCCC
Confidence 3445789999999999
No 186
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.52 E-value=19 Score=41.99 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhC---CCCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchH
Q psy9553 900 TIHVHQRDIFDILG---PEEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF 972 (1282)
Q Consensus 900 ~i~vh~rDiv~~lG---Peni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~ 972 (1282)
..-+.+.+....+| |-.+ |+|||||.+.++++..+. ...+.+++ .+|.+.+ -|--
T Consensus 198 ~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~-----s~l~~~~--------vGes 259 (434)
T 4b4t_M 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAA-----PQLVQMY--------IGEG 259 (434)
T ss_dssp HHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG-----GGGCSSC--------SSHH
T ss_pred HHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEeh-----hhhhhcc--------cchH
Confidence 34455567777774 2333 899999999888887653 23344443 3333322 1334
Q ss_pred HHHHHHHhccCCCCceEEEEcCCCChhh
Q psy9553 973 SALWRKTLKLKPGDHVWLVLDGPVDSIW 1000 (1282)
Q Consensus 973 ~~~~r~~~~~~~~~~~WivfDG~vd~~W 1000 (1282)
.+.+|.+........--|||--.+|+.-
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~ 287 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIG 287 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhh
Confidence 5555655432211123578877788875
No 187
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=34.48 E-value=15 Score=38.45 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||++++|+..+.
T Consensus 24 psGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 789999999999988653
No 188
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=34.42 E-value=17 Score=37.04 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+.+.|++.+.
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 578999999999998774
No 189
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=34.40 E-value=21 Score=42.47 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=72.8
Q ss_pred HHhHHhHHHHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCC
Q psy9553 892 RIKFETLITIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVAT 964 (1282)
Q Consensus 892 r~k~~~Li~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t 964 (1282)
...+..+|..-.++.+....+|- -++ |+|+|||++.+.++..+ + ...+.+|.-++. .+++|..
T Consensus 213 ~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~--~~fv~vn~~~l~-~~~~g~~---- 282 (489)
T 3hu3_A 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---G--AFFFLINGPEIM-SKLAGES---- 282 (489)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---S--SEEEEEEHHHHH-TSCTTHH----
T ss_pred HHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---C--CCEEEEEchHhh-hhhcchh----
Confidence 33444455555666777777742 222 89999999988887654 2 334556654443 2334432
Q ss_pred CccccchHHHHHHHHhccCCCCceEEEEcCCCChhhhhh------h-hhhccCCccccccCCCeeecCCCCeEEEecCCC
Q psy9553 965 NDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIEN------L-NSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI 1037 (1282)
Q Consensus 965 ~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd~~WiE~------m-nsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL 1037 (1282)
.|-+..+|..+... ...=|++|- +|..--.. + ..+ -+++|.+-+|- .-+.++.+|.=+...
T Consensus 283 ----~~~~~~~f~~A~~~---~p~iLfLDE-Id~l~~~~~~~~~~~~~~~--~~~LL~~ld~~--~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 283 ----ESNLRKAFEEAEKN---APAIIFIDE-LDAIAPKREKTHGEVERRI--VSQLLTLMDGL--KQRAHVIVMAATNRP 350 (489)
T ss_dssp ----HHHHHHHHHHHHHT---CSEEEEEES-HHHHCBCTTSCCCHHHHHH--HHHHHHHHHHS--CTTSCEEEEEEESCG
T ss_pred ----HHHHHHHHHHHHhc---CCcEEEecc-hhhhccccccccchHHHHH--HHHHHHHhhcc--ccCCceEEEEecCCc
Confidence 23344455544322 234577774 43221100 0 000 02233322221 224566777776665
Q ss_pred CCCCccchh--cccc-cccCC
Q psy9553 1038 DNASPATVS--RNGM-VYMSS 1055 (1282)
Q Consensus 1038 ~~asPAtvS--Rcgm-vy~~~ 1055 (1282)
....||..+ |++. |++.+
T Consensus 351 ~~Ld~al~r~gRf~~~i~i~~ 371 (489)
T 3hu3_A 351 NSIDPALRRFGRFDREVDIGI 371 (489)
T ss_dssp GGBCGGGGSTTSSCEEEECCC
T ss_pred cccCHHHhCCCcCceEEEeCC
Confidence 556688888 6665 55554
No 190
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=34.28 E-value=17 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.029 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+.+.|++.+.
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 578999999999998763
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.21 E-value=32 Score=36.59 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.+++.+. . ..+.++.-.+. ..|+.. ....+..+++.+... ...-|++|. +|
T Consensus 47 ~~GtGKT~la~~la~~~~---~--~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~a~~~---~~~vl~iDe-id 108 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQ---V--PFLAMAGAEFV--EVIGGL-------GAARVRSLFKEARAR---APCIVYIDE-ID 108 (262)
T ss_dssp CTTSSHHHHHHHHHHHHT---C--CEEEEETTTTS--SSSTTH-------HHHHHHHHHHHHHHT---CSEEEEEEC-C-
T ss_pred CCCCCHHHHHHHHHHHhC---C--CEEEechHHHH--hhccCh-------hHHHHHHHHHHHHhc---CCeEEEEeC-cc
Confidence 899999999999988652 2 33445544331 122211 112233444443321 235677885 55
Q ss_pred hh---------------hhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchh--ccc-ccccCC
Q psy9553 998 SI---------------WIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVS--RNG-MVYMSS 1055 (1282)
Q Consensus 998 ~~---------------WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvS--Rcg-mvy~~~ 1055 (1282)
.. .-..++.+|.. .+| +.-++++.+|.=+.......||..+ |+. .+++.+
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~------~~~--~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 109 AVGKKRSTTMSGFSNTEEEQTLNQLLVE------MDG--MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp ------------------CHHHHHHHHH------HHT--CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred hhhccccccccCccchhHHHHHHHHHHH------hhC--cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 43 22334444421 111 0113456666666555555678887 886 445543
No 192
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=34.05 E-value=16 Score=37.44 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|+..+
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999988765
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=33.99 E-value=25 Score=35.01 Aligned_cols=23 Identities=26% Similarity=-0.028 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
+.||||||+.+.|++.+...|.+
T Consensus 13 ~~GsGKST~~~~L~~~l~~~g~~ 35 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHhhCCCc
Confidence 57899999999999988654433
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.83 E-value=13 Score=43.25 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.3
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
.+-+||+||||||
T Consensus 206 prGiLL~GPPGtG 218 (428)
T 4b4t_K 206 PRGVLLYGPPGTG 218 (428)
T ss_dssp CCEEEEESCTTTT
T ss_pred CceEEEECCCCCC
Confidence 3459999999999
No 195
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.75 E-value=25 Score=40.86 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchH
Q psy9553 900 TIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF 972 (1282)
Q Consensus 900 ~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~ 972 (1282)
..-..+.+....+|- -.+ |+|||||++.++++..+. ...+.+++ .++.+.+ -|--
T Consensus 189 ~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~-----~~l~~~~--------~Ge~ 250 (428)
T 4b4t_K 189 ELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNG-----SEFVHKY--------LGEG 250 (428)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEG-----GGTCCSS--------CSHH
T ss_pred HHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec-----chhhccc--------cchh
Confidence 344555677777742 222 899999999999988763 23344443 3333322 1233
Q ss_pred HHHHHHHhccCCCCceEEEEcCCCChhh
Q psy9553 973 SALWRKTLKLKPGDHVWLVLDGPVDSIW 1000 (1282)
Q Consensus 973 ~~~~r~~~~~~~~~~~WivfDG~vd~~W 1000 (1282)
.+.+|++........--|+|--.+|+.-
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVDSIA 278 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeechhhhhhh
Confidence 4444444322111123577766677654
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=33.61 E-value=16 Score=37.77 Aligned_cols=17 Identities=12% Similarity=-0.101 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|++.+
T Consensus 16 psGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CTTSCHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 78999999999998765
No 197
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=33.60 E-value=18 Score=36.12 Aligned_cols=17 Identities=24% Similarity=-0.111 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78899999999999876
No 198
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=33.38 E-value=18 Score=35.59 Aligned_cols=18 Identities=22% Similarity=0.063 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+-+.|++.+.
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 578999999999998763
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.12 E-value=35 Score=43.66 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCC-----CceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE-----PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVL 992 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~-----~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wivf 992 (1282)
|+|+|||++.+.|+..+..-.. ...++.++.-++..+.-| .++|.. -+..+++.+... +...-+++
T Consensus 199 ~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~------~g~~~~-~l~~~~~~~~~~--~~~~iL~I 269 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY------RGEFEE-RLKAVIQEVVQS--QGEVILFI 269 (854)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------CHHH-HHHHHHHHHHTT--CSSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc------chHHHH-HHHHHHHHHHhc--CCCeEEEE
Confidence 8999999999999998755221 234555665444321111 112222 234444444321 22345566
Q ss_pred cCCCChhh-----------hhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCC----CCCccchhcccccccCCCC
Q psy9553 993 DGPVDSIW-----------IENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID----NASPATVSRNGMVYMSSSG 1057 (1282)
Q Consensus 993 DG~vd~~W-----------iE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~----~asPAtvSRcgmvy~~~~~ 1057 (1282)
|. +|..- ..-++.+|+.+ .+.+|.-+..-. ...||..+||..|++++-+
T Consensus 270 DE-i~~l~~~~~~~g~~~~~~~L~~~l~~~---------------~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~ 333 (854)
T 1qvr_A 270 DE-LHTVVGAGKAEGAVDAGNMLKPALARG---------------ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPT 333 (854)
T ss_dssp CC-C-------------------HHHHHTT---------------CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCC
T ss_pred ec-HHHHhccCCccchHHHHHHHHHHHhCC---------------CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCC
Confidence 73 33221 11233444332 344555443221 2468999999999998754
No 200
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.03 E-value=16 Score=37.73 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=10.6
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
..+|+.||||||
T Consensus 59 n~ili~GPPGtG 70 (212)
T 1tue_A 59 NCLVFCGPANTG 70 (212)
T ss_dssp SEEEEESCGGGC
T ss_pred cEEEEECCCCCC
Confidence 349999999999
No 201
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=32.93 E-value=3.3e+02 Score=26.00 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhH-----HHHHHhhHHHHHHHHhhhhcCCCCCHHH
Q psy9553 230 LRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQE-----VDMELKIEPIEEAYNVITRYDLPVDKED 304 (1282)
Q Consensus 230 L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~-----~~le~~i~~i~e~~~lL~~~~~~l~~e~ 304 (1282)
+...+..+..+..+.++.....+...|.+.+.+.++...+..++... ..+......++..+..+..-...++++.
T Consensus 12 ll~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l 91 (144)
T 3kyj_A 12 IWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEI 91 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 33444555556666666666677777877777777777777776643 2344444555556666666666666654
Q ss_pred HHH
Q psy9553 305 LEQ 307 (1282)
Q Consensus 305 ~~~ 307 (1282)
+..
T Consensus 92 ~dl 94 (144)
T 3kyj_A 92 VEI 94 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 202
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=32.68 E-value=5.4e+02 Score=28.33 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCC-C
Q psy9553 221 SCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDL-P 299 (1282)
Q Consensus 221 ~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~-~ 299 (1282)
.....+.+.+.+.+..-++.+.+.++++.+.+...+.. +.+..+..++.....+...+.+.++....|.+... .
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~-----~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~ 230 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDR-----EVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc
Confidence 34456667777777778888888888888887765532 23344455666666677777777777777765543 3
Q ss_pred CCHHHHHHHHHH
Q psy9553 300 VDKEDLEQVDSL 311 (1282)
Q Consensus 300 l~~e~~~~~~~l 311 (1282)
+++++...+..+
T Consensus 231 ~~~~~~~~l~dv 242 (339)
T 4ev6_A 231 TTKEDRENFEDL 242 (339)
T ss_dssp BCHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 455544444433
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=32.65 E-value=15 Score=40.86 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.8
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
...+++||+||||||
T Consensus 49 ~~~~~vLl~GppGtG 63 (322)
T 3eie_A 49 KPTSGILLYGPPGTG 63 (322)
T ss_dssp CCCCEEEEECSSSSC
T ss_pred CCCCeEEEECCCCCc
Confidence 345689999999999
No 204
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.57 E-value=18 Score=40.52 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHhcC--CcEEEecCCCCC
Q psy9553 1265 CIAKQE--HAVLLIGESGKL 1282 (1282)
Q Consensus 1265 ~~~~~~--~~~ll~G~~Gt~ 1282 (1282)
..+..+ .++||+||+|||
T Consensus 51 ~~l~~~~~~~~ll~G~~G~G 70 (353)
T 1sxj_D 51 KTLKSANLPHMLFYGPPGTG 70 (353)
T ss_dssp HHTTCTTCCCEEEECSTTSS
T ss_pred HHHhcCCCCEEEEECCCCCC
Confidence 445555 569999999999
No 205
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=32.50 E-value=19 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+.+.|++.+.
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 578999999999998763
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.44 E-value=14 Score=43.10 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=12.7
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
...+-+||+||||||
T Consensus 213 ~~prGvLL~GPPGtG 227 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTG 227 (437)
T ss_dssp CCCCEEEEESCTTSS
T ss_pred CCCCeEEEECCCCCc
Confidence 345789999999999
No 207
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.42 E-value=69 Score=38.20 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITA 953 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~ 953 (1282)
|+|+|||++.+.+++.+ | ..++.+|+-....
T Consensus 85 ppGtGKTtla~~la~~l---~--~~~i~in~s~~~~ 115 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQEL---G--YDILEQNASDVRS 115 (516)
T ss_dssp STTSSHHHHHHHHHHHT---T--CEEEEECTTSCCC
T ss_pred CCCCCHHHHHHHHHHHc---C--CCEEEEeCCCcch
Confidence 89999999999998876 2 3444566655443
No 208
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.34 E-value=19 Score=39.95 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHHHhc
Q psy9553 918 QWLTRKTTCIHTLMAALSEV 937 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~ 937 (1282)
|.||||||+.++|+..+...
T Consensus 98 ~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 98 SVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CTTSCHHHHHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHHhhcccc
Confidence 79999999999999988754
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=31.93 E-value=27 Score=33.89 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=17.0
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.|+|||++.++++..+..
T Consensus 44 ~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 7899999999999998765
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.29 E-value=20 Score=36.95 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68899999999998876
No 211
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=31.23 E-value=1.7e+02 Score=30.29 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9553 257 TDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLL 329 (1282)
Q Consensus 257 ~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l 329 (1282)
.++.++..++.....+...+...+..+..|...-.-|..-+.+-+...-..+..+...|..+...+...+..|
T Consensus 150 ~~l~~v~~L~~kh~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~~L~~l~~~R~~~L 222 (224)
T 2iak_A 150 ERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHI 222 (224)
T ss_dssp ------------CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555655666666666677777777666655544433333334556778889998887766554443
No 212
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=31.18 E-value=27 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=16.8
Q ss_pred CCCCChhHHHHHHHHHHHh
Q psy9553 918 QWLTRKTTCIHTLMAALSE 936 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~ 936 (1282)
|.||||||+.+.|+..+..
T Consensus 100 psGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 7999999999999888764
No 213
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=31.13 E-value=18 Score=37.47 Aligned_cols=16 Identities=13% Similarity=-0.201 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 30 ~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 30 PAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CTTSSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999887
No 214
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=31.04 E-value=2.7e+02 Score=28.12 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy9553 322 AMTANVLLTTMQPRFEQDLADNLAQFRQ 349 (1282)
Q Consensus 322 ~~~~~~~l~~~k~~f~~~L~~~~~~f~~ 349 (1282)
+++.+..+......++..+..+++.+..
T Consensus 108 lEelr~kL~P~~eEL~~~l~~~~Eelr~ 135 (191)
T 1nfn_A 108 MEDVCGRLVQYRGEVQAMLGQSTEELRV 135 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333333
No 215
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=30.92 E-value=22 Score=36.47 Aligned_cols=24 Identities=17% Similarity=-0.046 Sum_probs=19.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
+.||||||+.+.|++.+...+..+
T Consensus 18 ~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcE
Confidence 678999999999999887654443
No 216
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=30.88 E-value=21 Score=35.90 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57899999999998876
No 217
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=30.85 E-value=21 Score=35.80 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+.+.|++.+.
T Consensus 14 ~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 678999999999988763
No 218
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=30.81 E-value=4.9e+02 Score=27.29 Aligned_cols=105 Identities=9% Similarity=0.038 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcC
Q psy9553 219 INSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRT-ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYD 297 (1282)
Q Consensus 219 ~~~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~L~~~-p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~ 297 (1282)
+..+...+...+.+.+..-++.+.+.++++...+... ...+.++ ..++.....+...+.+..+...-|....
T Consensus 145 ~~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l-------~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 145 CGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFL-------ALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 3456677777888888888888888888877666543 2233333 4455566666667777777777776543
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9553 298 -LPVDKEDLEQVDSLRYTWQKLLARAMTANVLLT 330 (1282)
Q Consensus 298 -~~l~~e~~~~~~~l~~~w~~l~~~~~~~~~~l~ 330 (1282)
..+++++...+..+...-..+...++...+.+.
T Consensus 218 ~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~ 251 (264)
T 3nvo_A 218 LPWMSDDHRRRMQDIADRLGRGLDEIDACIARTG 251 (264)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666655555544444444444444333333
No 219
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=30.61 E-value=18 Score=41.01 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=11.7
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
.+++||+||||||
T Consensus 84 ~~~iLL~GppGtG 96 (355)
T 2qp9_X 84 TSGILLYGPPGTG 96 (355)
T ss_dssp CCCEEEECSTTSC
T ss_pred CceEEEECCCCCc
Confidence 4679999999999
No 220
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.54 E-value=16 Score=38.76 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=12.8
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||++++|+.
T Consensus 39 ~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 39 PSGSGKSTMLNIIGC 53 (235)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHhc
Confidence 789999998888765
No 221
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.52 E-value=33 Score=39.91 Aligned_cols=134 Identities=20% Similarity=0.221 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch
Q psy9553 899 ITIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI 971 (1282)
Q Consensus 899 i~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~ 971 (1282)
|..-..+.+....+|- -.+ |+|||||.+.++++..+. ...+.+++ .+|.+.+ . |-
T Consensus 197 v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~-----s~l~sk~-------~-Ge 258 (437)
T 4b4t_L 197 IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPA-----SGIVDKY-------I-GE 258 (437)
T ss_dssp HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG-----GGTCCSS-------S-SH
T ss_pred HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh-----hhhcccc-------c-hH
Confidence 3444566777777742 222 899999999999888763 23344443 3333322 1 22
Q ss_pred HHHHHHHHhccCCCCceEEEEcCCCChhhhhh----------hhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCC
Q psy9553 972 FSALWRKTLKLKPGDHVWLVLDGPVDSIWIEN----------LNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNAS 1041 (1282)
Q Consensus 972 ~~~~~r~~~~~~~~~~~WivfDG~vd~~WiE~----------mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~as 1041 (1282)
-.+.+|.+........--|||--.+|+.--.- .+.++ |-+|+.-.|- .=.+++-+|.=+......=
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l--~~lL~~lDg~--~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTL--MELLTQMDGF--DNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHH--HHHHHHHHSS--SCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHH--HHHHHHhhcc--cCCCCeEEEEecCCchhhC
Confidence 34445544332222223577766687753210 11111 1122222221 1123455676666666666
Q ss_pred ccchhccc----ccccCC
Q psy9553 1042 PATVSRNG----MVYMSS 1055 (1282)
Q Consensus 1042 PAtvSRcg----mvy~~~ 1055 (1282)
||-. |-| .|||+.
T Consensus 335 pAll-RpGRfD~~I~i~l 351 (437)
T 4b4t_L 335 PALL-RPGRLDRKVEIPL 351 (437)
T ss_dssp TTTT-STTSEEEEECCCC
T ss_pred HHHh-CCCccceeeecCC
Confidence 7766 333 466664
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=30.48 E-value=17 Score=37.33 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|++.+
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 78999999999998876
No 223
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.44 E-value=22 Score=35.60 Aligned_cols=18 Identities=28% Similarity=0.025 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+-+.|++.+.
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 678999999999988763
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=30.38 E-value=22 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||++++|.....
T Consensus 10 ~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCCCC
Confidence 689999999999998763
No 225
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.18 E-value=22 Score=35.99 Aligned_cols=18 Identities=17% Similarity=-0.047 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 688999999999998763
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=29.92 E-value=21 Score=39.94 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=22.2
Q ss_pred CCeEEEecCCCCCCCccchhccccc-ccCCCC
Q psy9553 1027 AVKIIFEPHNIDNASPATVSRNGMV-YMSSSG 1057 (1282)
Q Consensus 1027 ~~~~~FEv~dL~~asPAtvSRcgmv-y~~~~~ 1057 (1282)
.+.++.-......-||+-.||||++ .+++..
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 4566665666677899999999975 466543
No 227
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=29.84 E-value=19 Score=38.27 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 32 ~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 32 PTGAGKSVFLELIAGI 47 (240)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999998888764
No 228
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=29.60 E-value=23 Score=36.87 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998874
No 229
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=29.51 E-value=19 Score=41.07 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=12.7
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
...++||+||||||
T Consensus 71 ~~~~ill~Gp~GtG 84 (376)
T 1um8_A 71 SKSNILLIGPTGSG 84 (376)
T ss_dssp CCCCEEEECCTTSS
T ss_pred CCCCEEEECCCCCC
Confidence 56799999999999
No 230
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=29.39 E-value=25 Score=38.60 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|.||||||+.+.|++.+...+.
T Consensus 13 ~sGSGKSTva~~L~~~lg~~~~ 34 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFRREGV 34 (290)
T ss_dssp CC---CCTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhhcCC
Confidence 6789999999999998875443
No 231
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.31 E-value=23 Score=41.54 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHhcCC--cEEEecCCCCC
Q psy9553 1265 CIAKQEH--AVLLIGESGKL 1282 (1282)
Q Consensus 1265 ~~~~~~~--~~ll~G~~Gt~ 1282 (1282)
..+..++ ++||+||||||
T Consensus 43 ~~i~~~~~~~vLL~GppGtG 62 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTG 62 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSS
T ss_pred HHHHcCCCcEEEEECCCCCc
Confidence 3344444 69999999999
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=29.28 E-value=18 Score=37.09 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||+.+.|++
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 678999999999976
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=29.23 E-value=23 Score=37.39 Aligned_cols=17 Identities=29% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++.+
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998876
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=29.08 E-value=31 Score=40.59 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=15.3
Q ss_pred HHHHHHHhc---CCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQ---EHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~---~~~~ll~G~~Gt~ 1282 (1282)
.+++.+... ++++||+||||||
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtG 75 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTG 75 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSS
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCC
Confidence 444444433 3579999999999
No 235
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.07 E-value=32 Score=39.47 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=22.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
|+|+|||++.+.|...+...| .++++++||
T Consensus 43 ~~G~GKs~~~~~~~~~~~~~~--~~~~~~D~~ 72 (392)
T 4ag6_A 43 KPGAGKSFTAKMLLLREYMQG--SRVIIIDPE 72 (392)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 799999999999987765443 345556765
No 236
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=29.02 E-value=36 Score=39.72 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.9
Q ss_pred CCcEEEecCCCCC
Q psy9553 1270 EHAVLLIGESGKL 1282 (1282)
Q Consensus 1270 ~~~~ll~G~~Gt~ 1282 (1282)
..|++|+||+|||
T Consensus 130 ~~~lll~Gp~G~G 142 (440)
T 2z4s_A 130 YNPLFIYGGVGLG 142 (440)
T ss_dssp SCCEEEECSSSSS
T ss_pred CCeEEEECCCCCC
Confidence 4699999999999
No 237
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.70 E-value=30 Score=38.57 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
-|.||||+.-.|+.++...|..+-....+| +=+...+||.
T Consensus 23 GGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~ 62 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLER 62 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTS
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCC
Confidence 469999999999999999888887788899 6677777775
No 238
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=28.65 E-value=24 Score=35.94 Aligned_cols=17 Identities=24% Similarity=-0.068 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78899999999999876
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.43 E-value=18 Score=38.00 Aligned_cols=16 Identities=19% Similarity=-0.072 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 38 ~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 38 ASGSGKSTLLYILGLL 53 (224)
T ss_dssp CTTSCHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999988887653
No 240
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=28.37 E-value=21 Score=35.62 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+++++..++.
T Consensus 34 ~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 34 ANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 788999999999888764
No 241
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.35 E-value=22 Score=41.12 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.2
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+-+||+||||||
T Consensus 215 ~prGvLLyGPPGTG 228 (437)
T 4b4t_I 215 PPKGVILYGAPGTG 228 (437)
T ss_dssp CCSEEEEESSTTTT
T ss_pred CCCCCceECCCCch
Confidence 44679999999999
No 242
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.29 E-value=17 Score=38.18 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=9.3
Q ss_pred CCCCChhHHHHHHH-HHH
Q psy9553 918 QWLTRKTTCIHTLM-AAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~-~a~ 934 (1282)
|.|+||||+.+.|+ ..+
T Consensus 35 p~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp SCC----CHHHHHHC---
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 89999999999998 654
No 243
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=28.21 E-value=17 Score=38.26 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||++++++.++.
T Consensus 35 pnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 35 GNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp CCSHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcccc
Confidence 699999999999999874
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.14 E-value=27 Score=35.57 Aligned_cols=18 Identities=33% Similarity=0.147 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+||||+++.|+.-+.
T Consensus 9 ~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCSSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhcc
Confidence 678999999999999876
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=28.08 E-value=23 Score=36.20 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|.||||||+.+.|++
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 678999999999987
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=28.06 E-value=23 Score=36.35 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|.+.+
T Consensus 27 PSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 89999999999998764
No 247
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=27.88 E-value=51 Score=27.83 Aligned_cols=63 Identities=10% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHHhHHHHhhhccCCeeEecChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEE
Q psy9553 707 LCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHI 774 (1282)
Q Consensus 707 ~iqk~L~~yLe~KR~~FPRFyFLSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m 774 (1282)
.+.+.+-+||++|...=|+||| .|+..++-. ..|..|.+.+..+-.- ..|.|-..++.+..|+
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf---~D~~k~~P~-~k~r~vKK~~~~LV~E-g~leywSSGSTTmygl 65 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYF---NDFTDLFPD-MKQREVKKILTALVND-EVLEYWSSGSTTMYGL 65 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEH---HHHHHHCTT-SCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcccccccchH---HHHHHHccc-cCHHHHHHHHHHHHhc-CceEEEecCCeEEEec
Confidence 4667888999999888999999 899999853 3699999888886321 2355533333344444
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.83 E-value=39 Score=37.13 Aligned_cols=31 Identities=16% Similarity=-0.031 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHHHHHh-cCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSE-VEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~-~~~~~~~~~inp 948 (1282)
|.|+||||+...|+..+.. -|..+.+...+|
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 7899999999999999874 565554444444
No 249
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.76 E-value=19 Score=42.14 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.1
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
..-+-+||+||||||
T Consensus 241 ~pprGILLyGPPGTG 255 (467)
T 4b4t_H 241 DPPKGILLYGPPGTG 255 (467)
T ss_dssp CCCSEEEECSCTTSS
T ss_pred CCCCceEeeCCCCCc
Confidence 456789999999999
No 250
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=27.66 E-value=99 Score=34.16 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=60.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.++..+. ....+.+++-.+.. ..+|. ....+..++..+.. ....-|++|- +|
T Consensus 53 ppGtGKT~la~ala~~~~----~~~~~~i~~~~l~~-~~~g~--------~~~~~~~lf~~a~~---~~~~vl~iDE-id 115 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEAN----NSTFFSISSSDLVS-KWLGE--------SEKLVKNLFQLARE---NKPSIIFIDE-ID 115 (322)
T ss_dssp SSSSCHHHHHHHHHHHTT----SCEEEEEECCSSCC-SSCCS--------CHHHHHHHHHHHHH---TSSEEEEEET-TT
T ss_pred CCCccHHHHHHHHHHHcC----CCcEEEEEhHHHHh-hhhhH--------HHHHHHHHHHHHHh---cCCcEEEeec-HH
Confidence 899999999998887651 12334455543321 11221 12234444444332 2346888884 66
Q ss_pred hhhhh-------hhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc-ccccCCCC
Q psy9553 998 SIWIE-------NLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG-MVYMSSSG 1057 (1282)
Q Consensus 998 ~~WiE-------~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg-mvy~~~~~ 1057 (1282)
..--. ..+.++ |.+|+...|-. .-+.++.+|.=+.......||..+||. .+|+.+.+
T Consensus 116 ~l~~~~~~~~~~~~~~~~--~~ll~~ld~~~-~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 180 (322)
T 1xwi_A 116 SLCGSRSENESEAARRIK--TEFLVQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 180 (322)
T ss_dssp GGGCCSSSCCTTHHHHHH--HHHHHHHHCSS-SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCC
T ss_pred HhccccccccchHHHHHH--HHHHHHHhccc-ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcC
Confidence 54210 000010 11222211110 012445566666666667899999995 56676443
No 251
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=27.63 E-value=22 Score=40.30 Aligned_cols=17 Identities=24% Similarity=-0.019 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++++.-+
T Consensus 38 psGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 38 ASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 89999999988887643
No 252
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=27.61 E-value=26 Score=36.20 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999876
No 253
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.59 E-value=26 Score=36.38 Aligned_cols=18 Identities=17% Similarity=-0.090 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 12 ~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 678999999999998763
No 254
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=27.53 E-value=4.9e+02 Score=26.28 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy9553 235 HREMDYVYAVMNEMDRKLDRT--ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLR 312 (1282)
Q Consensus 235 ~~~~~~l~~~~~~~~~~L~~~--p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~l~ 312 (1282)
...++.+...+.+....|... +.+++++..++.............+..+..+...-.-|..-+..-++.-...+..+.
T Consensus 125 ~~d~~~~~~WL~~~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~h~~~~~I~~~~~~l~ 204 (218)
T 3fb2_A 125 HRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVL 204 (218)
T ss_dssp HHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344555555555544444332 345566666666666666666666666666666555444333222333334566777
Q ss_pred HHHHHHHHHHH
Q psy9553 313 YTWQKLLARAM 323 (1282)
Q Consensus 313 ~~w~~l~~~~~ 323 (1282)
..|..+...+.
T Consensus 205 ~rW~~l~~~l~ 215 (218)
T 3fb2_A 205 DRWRRLKAQMI 215 (218)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 88887766543
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=27.52 E-value=46 Score=37.22 Aligned_cols=18 Identities=11% Similarity=-0.019 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||+.+.|++.+.
T Consensus 15 ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHcC
Confidence 789999999999998764
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=27.41 E-value=25 Score=35.31 Aligned_cols=16 Identities=25% Similarity=0.042 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
+.||||||+.+.|++.
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 6889999999999987
No 257
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=27.30 E-value=21 Score=41.86 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=12.4
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+++||+||||||
T Consensus 166 ~~~~vLL~GppGtG 179 (444)
T 2zan_A 166 PWRGILLFGPPGTG 179 (444)
T ss_dssp CCSEEEEECSTTSS
T ss_pred CCceEEEECCCCCC
Confidence 45789999999999
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=27.15 E-value=42 Score=37.06 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=19.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPH 941 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~ 941 (1282)
|.|+||||+...|+..+..-|..+
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV 135 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSV 135 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCChHHHHHHHHHHHHHhcCCEE
Confidence 789999999999999987655443
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.96 E-value=34 Score=37.77 Aligned_cols=21 Identities=24% Similarity=0.007 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.|+||||+++.|+..+..-+
T Consensus 110 ~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp STTSSHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHHhcC
Confidence 789999999999999886543
No 260
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.95 E-value=38 Score=34.42 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.|+|||++.+.++..+..-+.+
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~ 84 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCe
Confidence 89999999999999887654433
No 261
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=26.95 E-value=22 Score=37.18 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68899999999998865
No 262
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.91 E-value=22 Score=40.80 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.6
Q ss_pred cCCcEEEecCCCCC
Q psy9553 1269 QEHAVLLIGESGKL 1282 (1282)
Q Consensus 1269 ~~~~~ll~G~~Gt~ 1282 (1282)
..+++||+||||||
T Consensus 147 ~~~~vLL~GppGtG 160 (389)
T 3vfd_A 147 PARGLLLFGPPGNG 160 (389)
T ss_dssp CCSEEEEESSTTSC
T ss_pred CCceEEEECCCCCC
Confidence 45899999999999
No 263
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=26.86 E-value=15 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|++.+...|
T Consensus 8 ~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 8 VDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEHHHHHHHHHHHHHEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 568999999999999987544
No 264
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=26.72 E-value=19 Score=44.02 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=10.8
Q ss_pred cEEEecCCCCC
Q psy9553 1272 AVLLIGESGKL 1282 (1282)
Q Consensus 1272 ~~ll~G~~Gt~ 1282 (1282)
|+||+||||||
T Consensus 329 ~vLL~GppGtG 339 (595)
T 3f9v_A 329 HILIIGDPGTA 339 (595)
T ss_dssp CEEEEESSCCT
T ss_pred ceEEECCCchH
Confidence 99999999999
No 265
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=26.64 E-value=29 Score=38.80 Aligned_cols=18 Identities=22% Similarity=-0.003 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+|+|||++-..|++.+.
T Consensus 48 PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp STTSSHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 799999999999988663
No 266
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=26.63 E-value=27 Score=37.31 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 799999999999999874
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.59 E-value=26 Score=41.63 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.7
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+...+++||+||||||
T Consensus 235 ~~~~~~vLL~GppGtG 250 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTG 250 (489)
T ss_dssp CCCCCEEEEECSTTSS
T ss_pred CCCCCcEEEECcCCCC
Confidence 4566789999999999
No 268
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=26.56 E-value=4.2e+02 Score=25.15 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy9553 232 KKYHREMDYVYAVMNEMDRKLDRT-ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310 (1282)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~L~~~-p~~leel~e~~~~i~~i~~~~~~le~~i~~i~e~~~lL~~~~~~l~~e~~~~~~~ 310 (1282)
..+...++.+...+.+....+... +.++..+...+.....+...+...+..++.+...-.-|..-+..-++.....+..
T Consensus 49 ~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~ 128 (149)
T 3f31_A 49 QFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLME 128 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344556666666666665555432 2344444445555555555555555566666655544444443334444566888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9553 311 LRYTWQKLLARAMTANVLL 329 (1282)
Q Consensus 311 l~~~w~~l~~~~~~~~~~l 329 (1282)
+...|..+.....+....|
T Consensus 129 l~~~W~~L~~~~~~r~~~L 147 (149)
T 3f31_A 129 LHRQWELLLEKMREKGIKL 147 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999988776655444
No 269
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.56 E-value=19 Score=35.99 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=10.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 13 ~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CC----CHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57899999999998765
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=26.55 E-value=21 Score=37.92 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAEM 55 (237)
T ss_dssp STTSSHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999887644
No 271
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=26.47 E-value=28 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 678999999999988763
No 272
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.46 E-value=33 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=15.5
Q ss_pred HHHHHH-hcCCcEEEecCCCCC
Q psy9553 1262 LVNCIA-KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1262 l~~~~~-~~~~~~ll~G~~Gt~ 1282 (1282)
+++.+. ....++||+||||||
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~G 213 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVG 213 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTT
T ss_pred HHHHHhccCCCCeEEECCCCCC
Confidence 444443 356789999999999
No 273
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.45 E-value=27 Score=38.62 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.++|+..+.
T Consensus 88 ~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 799999999999998775
No 274
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=26.44 E-value=41 Score=37.92 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
++|+||||+++.|..++..-+....+...+|-+
T Consensus 82 ~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 82 PPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 688999999999999886655544444445543
No 275
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.40 E-value=23 Score=36.60 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceee------eeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEE
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREM------RMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLV 991 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~------~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~Wiv 991 (1282)
|.||||||+.+.|++.+ |.++... .+.+.+-.-.++-..+.. ...-.|+++..+++........ ..-+|
T Consensus 8 ~~GsGKsT~a~~L~~~~---~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~-~~~~i 82 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY---GIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDC-ERGFL 82 (216)
T ss_dssp STTSSHHHHHHHHHHHS---SCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGG-TTCEE
T ss_pred CCCCCHHHHHHHHHHHh---CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccc-cCCEE
Confidence 68899999999998764 3222100 022211100111111110 0111245555555554433222 23467
Q ss_pred EcC-CCChhhhhhhhhhcc
Q psy9553 992 LDG-PVDSIWIENLNSVLD 1009 (1282)
Q Consensus 992 fDG-~vd~~WiE~mnsvlD 1009 (1282)
+|| |....+++.+...+.
T Consensus 83 ldg~p~~~~~~~~~~~~~~ 101 (216)
T 3dl0_A 83 LDGFPRTVAQAEALEEILE 101 (216)
T ss_dssp EESCCCSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 888 477777777776553
No 276
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=26.30 E-value=38 Score=39.45 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
|+|+|||+.++.+...+-..| ..+++++||.
T Consensus 61 ~tGsGKs~~~~~li~~~~~~g--~~viv~Dpkg 91 (437)
T 1e9r_A 61 ATGTGKSVLLRELAYTGLLRG--DRMVIVDPNG 91 (437)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT--CEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 899999999877776554433 4567788883
No 277
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.15 E-value=40 Score=35.01 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.|+|||++.+.+++.+..-+
T Consensus 60 ~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 60 PVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp STTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 799999999999999876543
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=26.12 E-value=21 Score=38.53 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 40 ~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999988887653
No 279
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=26.09 E-value=24 Score=39.90 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++++.-+
T Consensus 49 pnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 49 PSGSGKTTILRLIAGLE 65 (355)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 79999999999887643
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=26.08 E-value=24 Score=38.29 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHHHhhhC---CCCC----CCCCChhHHHHHHHHHH
Q psy9553 895 FETLITIHVHQRDIFDILG---PEEV----QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 895 ~~~Li~i~vh~rDiv~~lG---Peni----~~~~GKt~~~~~L~~a~ 934 (1282)
+...|+.-..++++++.+| |..+ |.|+||||+.++++..+
T Consensus 22 l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 22 LTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3333444556667777663 1222 89999999999988754
No 281
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=25.98 E-value=29 Score=42.44 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCcEEEecCCCCC
Q psy9553 1261 YLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1261 ~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
.-+...+..+.+++|+||+|||
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtG 72 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTG 72 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSS
T ss_pred hhccccccCCCEEEEEeCCCCC
Confidence 4566778899999999999999
No 282
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=25.92 E-value=24 Score=40.27 Aligned_cols=17 Identities=12% Similarity=-0.043 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++|+++.-+
T Consensus 37 psGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 79999999999887754
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=25.88 E-value=37 Score=37.41 Aligned_cols=21 Identities=24% Similarity=0.041 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.|+||||+++.|+.-+..-+
T Consensus 108 ~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp CTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 899999999999999876533
No 284
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.83 E-value=22 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.057 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+..
T Consensus 43 ~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTY 58 (214)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999998887653
No 285
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=25.76 E-value=29 Score=36.20 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999876
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.74 E-value=22 Score=38.28 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 41 ~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 41 PNGSGKSTLINVITGF 56 (257)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999998887654
No 287
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=25.72 E-value=25 Score=39.89 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++++.-+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 37 PSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHCCC
Confidence 78999999999887643
No 288
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=25.71 E-value=17 Score=41.26 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=46.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-CCCCceEEEEcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-KPGDHVWLVLDGPV 996 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-~~~~~~WivfDG~v 996 (1282)
|+|+|||++.+.+++.+ + ...+.+|.-.+....++|.- ..|.++.+++.+... ......-+++|. +
T Consensus 59 ppGtGKT~la~~ia~~~---~--~~~~~~~~~~l~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~vl~lDE-i 125 (363)
T 3hws_A 59 PTGSGKTLLAETLARLL---D--VPFTMADATTLTEAGYVGED-------VENIIQKLLQKCDYDVQKAQRGIVYIDQ-I 125 (363)
T ss_dssp CTTSSHHHHHHHHHHHT---T--CCEEEEEHHHHTTCHHHHHH-------HTHHHHHHHHHTTTCHHHHHHCEEEEEC-H
T ss_pred CCCCCHHHHHHHHHHHc---C--CCEEEechHHhccccccccc-------HHHHHHHHHHHhhhhHHhcCCcEEEEeC-h
Confidence 89999999999998876 2 23445666555444455532 134556665543110 001134688886 3
Q ss_pred Chh-----------------hhhhhhhhccCCccccc
Q psy9553 997 DSI-----------------WIENLNSVLDDNRTLTL 1016 (1282)
Q Consensus 997 d~~-----------------WiE~mnsvlDdnk~L~L 1016 (1282)
|.. -...|-.+|| +....+
T Consensus 126 d~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~ 161 (363)
T 3hws_A 126 DKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAV 161 (363)
T ss_dssp HHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC----
T ss_pred hhhcccccccccccccchHHHHHHHHHHhc-Cceeec
Confidence 322 4555566677 555554
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=25.71 E-value=31 Score=35.53 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHHH-hcC
Q psy9553 918 QWLTRKTTCIHTLMAALS-EVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~-~~~ 938 (1282)
+.||||||+.+.|++.+. ..|
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp STTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhccccC
Confidence 688999999999999887 444
No 290
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=25.64 E-value=22 Score=38.74 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 42 pnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNGI 57 (275)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 7899999988887664
No 291
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.55 E-value=25 Score=37.52 Aligned_cols=16 Identities=19% Similarity=-0.078 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 37 ~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 37 PNGAGKSTLGKILAGD 52 (250)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999988764
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=25.44 E-value=25 Score=39.90 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++++.-+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 37 PSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 78999999999887643
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.40 E-value=22 Score=37.73 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 40 ~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGL 55 (240)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999998887764
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=25.27 E-value=30 Score=38.16 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 134 psGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc
Confidence 79999999999999987
No 295
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=25.27 E-value=24 Score=39.89 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=13.2
Q ss_pred hcCCcEEEecCCCCC
Q psy9553 1268 KQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1268 ~~~~~~ll~G~~Gt~ 1282 (1282)
...+++||+||||||
T Consensus 115 ~~~~~vLl~GppGtG 129 (357)
T 3d8b_A 115 GPPKGILLFGPPGTG 129 (357)
T ss_dssp SCCSEEEEESSTTSS
T ss_pred CCCceEEEECCCCCC
Confidence 456899999999999
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=25.15 E-value=31 Score=37.78 Aligned_cols=21 Identities=14% Similarity=-0.084 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.||||||+.+.|+..+...|
T Consensus 39 ~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhcC
Confidence 799999999999999987543
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=25.12 E-value=48 Score=37.01 Aligned_cols=23 Identities=26% Similarity=-0.012 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEP 940 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~ 940 (1282)
|.|+||||+++.|+..+..-+..
T Consensus 137 ~nGaGKTTll~~Lag~l~~~~g~ 159 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKNHGFS 159 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCE
Confidence 79999999999999988765443
No 298
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=25.11 E-value=39 Score=37.46 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchHHHHHHHHhccCCCCceEEEEcCCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVD 997 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~~~~~~~WivfDG~vd 997 (1282)
|+|+|||++.+.++..+. ...+.+|+ .+|.+.+-. =..+.+..+++.+... ...=|++|- +|
T Consensus 59 ppGtGKT~la~aia~~~~-----~~~~~v~~-----~~l~~~~~g----~~~~~~~~~f~~a~~~---~~~vl~iDE-id 120 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEAN-----STFFSVSS-----SDLVSKWMG----ESEKLVKQLFAMAREN---KPSIIFIDQ-VD 120 (322)
T ss_dssp SSSSCHHHHHHHHHHHHT-----CEEEEEEH-----HHHHTTTGG----GHHHHHHHHHHHHHHT---SSEEEEEEC-GG
T ss_pred CCCCcHHHHHHHHHHHHC-----CCEEEEch-----HHHhhcccc----hHHHHHHHHHHHHHhc---CCeEEEech-hh
Confidence 899999999999988652 23344444 233332110 0122334444443321 235677775 55
Q ss_pred hhhhhh---hhhhcc--CCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccc-cccCC
Q psy9553 998 SIWIEN---LNSVLD--DNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGM-VYMSS 1055 (1282)
Q Consensus 998 ~~WiE~---mnsvlD--dnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgm-vy~~~ 1055 (1282)
..--.. .+.+++ -+.+|..-+|-. .-+.++.+|.=+.......||..+||.. +|+..
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~ 183 (322)
T 3eie_A 121 ALTGTRGEGESEASRRIKTELLVQMNGVG-NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183 (322)
T ss_dssp GGSCC------CCTHHHHHHHHHHHGGGG-TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCC
T ss_pred hhhccCCCCcchHHHHHHHHHHHHhcccc-ccCCceEEEEecCChhhCCHHHHcccCeEEEeCC
Confidence 442100 000000 011222221110 1234566666666666678999999964 55664
No 299
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=25.09 E-value=22 Score=38.41 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 45 ~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CTTSCHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhcC
Confidence 7899999988887763
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.94 E-value=23 Score=37.72 Aligned_cols=17 Identities=18% Similarity=-0.101 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999988887643
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.86 E-value=26 Score=37.83 Aligned_cols=16 Identities=25% Similarity=0.025 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+..
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999988764
No 302
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=24.81 E-value=26 Score=39.91 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++++.-+
T Consensus 45 pnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 45 PSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHHcCC
Confidence 79999999999887643
No 303
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=24.81 E-value=23 Score=37.29 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 42 ~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 42 STGAGKTSLLMMIMGE 57 (229)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999998888764
No 304
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.80 E-value=31 Score=35.71 Aligned_cols=17 Identities=12% Similarity=-0.169 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67899999999999877
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=24.75 E-value=23 Score=37.78 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 43 ~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRF 58 (247)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999998887664
No 306
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=24.70 E-value=22 Score=36.20 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67899999999999866
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=24.65 E-value=26 Score=34.81 Aligned_cols=13 Identities=15% Similarity=-0.064 Sum_probs=11.2
Q ss_pred CCCCChhHHHHHH
Q psy9553 918 QWLTRKTTCIHTL 930 (1282)
Q Consensus 918 ~~~~GKt~~~~~L 930 (1282)
|.||||||..+++
T Consensus 17 ~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 17 SSGSGKSTFAKKH 29 (171)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 7899999998873
No 308
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=24.53 E-value=27 Score=39.85 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++|+++.-+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCcHHHHHHHHHHcCC
Confidence 78999999999887643
No 309
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=24.36 E-value=34 Score=33.21 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.|+|||+++.++.-|+.
T Consensus 31 ~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 31 QNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 788999999998888774
No 310
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=24.32 E-value=27 Score=38.18 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|+||||||+.+.|++.+
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999998765
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=24.31 E-value=48 Score=36.80 Aligned_cols=26 Identities=19% Similarity=-0.029 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCcee
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHRE 943 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~ 943 (1282)
|.|+||||+...|+..+...|..+.+
T Consensus 113 ~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 78899999999999999876655433
No 312
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.29 E-value=24 Score=37.94 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 49 ~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999998887654
No 313
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.21 E-value=28 Score=37.07 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.++++..+
T Consensus 57 ~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999988765
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.17 E-value=27 Score=35.60 Aligned_cols=17 Identities=18% Similarity=-0.081 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68899999999998764
No 315
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.15 E-value=24 Score=38.09 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 58 ~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHHcC
Confidence 7999999988887653
No 316
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=24.12 E-value=34 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
+.||||||+.+.|++.+
T Consensus 20 ~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKY 36 (192)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57899999999998864
No 317
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.94 E-value=32 Score=36.59 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAI 951 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i 951 (1282)
|+|+|||++.+.++..+. . ..+.+++..+
T Consensus 53 ~~GtGKT~la~~la~~~~---~--~~~~i~~~~~ 81 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAK---V--PFFTISGSDF 81 (257)
T ss_dssp CTTSCHHHHHHHHHHHHT---C--CEEEECSCSS
T ss_pred cCCCCHHHHHHHHHHHcC---C--CEEEEeHHHH
Confidence 799999999999988652 2 2355666554
No 318
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.89 E-value=40 Score=38.93 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccchH
Q psy9553 900 TIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF 972 (1282)
Q Consensus 900 ~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~ 972 (1282)
..-+.+.+..+.+|- -.+ |+|||||.+.++++..+.. ..+.++. .+|.+.+- |--
T Consensus 199 ~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v~~-----s~l~sk~v--------Ges 260 (437)
T 4b4t_I 199 ELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRIVG-----SELIQKYL--------GDG 260 (437)
T ss_dssp HHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEEES-----GGGCCSSS--------SHH
T ss_pred HHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEEEH-----HHhhhccC--------chH
Confidence 334556777777742 222 8999999998888876532 3333433 33433221 334
Q ss_pred HHHHHHHhccCCCCceEEEEcCCCChhhhh--------------hhhhhccCCccccccCCCeeecCCCCeEEEecCCCC
Q psy9553 973 SALWRKTLKLKPGDHVWLVLDGPVDSIWIE--------------NLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038 (1282)
Q Consensus 973 ~~~~r~~~~~~~~~~~WivfDG~vd~~WiE--------------~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~ 1038 (1282)
.+.+|.+........--|||=-.+|+.--. .++..| +-..| ..-.+++-+|.=+....
T Consensus 261 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL------~~lDg--~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 261 PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL------NQLDG--FDDRGDVKVIMATNKIE 332 (437)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHH------HHHHH--CCCSSSEEEEEEESCST
T ss_pred HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHH------HHhhC--cCCCCCEEEEEeCCChh
Confidence 555565543222222356665567765422 122222 11111 11123455666666666
Q ss_pred CCCccchh--ccc-ccccCC
Q psy9553 1039 NASPATVS--RNG-MVYMSS 1055 (1282)
Q Consensus 1039 ~asPAtvS--Rcg-mvy~~~ 1055 (1282)
..=||-.- |.. .|||+.
T Consensus 333 ~LDpALlRpGRfD~~I~v~l 352 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFEN 352 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCC
T ss_pred hcCHHHhcCCceeEEEEcCC
Confidence 67777763 444 356663
No 319
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=23.81 E-value=48 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=24.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPK 949 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk 949 (1282)
+.|+||||+...|+.++...|..+-+...+|-
T Consensus 87 ~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 68899999999999999877766655556653
No 320
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.80 E-value=49 Score=37.92 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhhCC---CCC----CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccceecCCCCccccch
Q psy9553 899 ITIHVHQRDIFDILGP---EEV----QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGI 971 (1282)
Q Consensus 899 i~i~vh~rDiv~~lGP---eni----~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~ 971 (1282)
|..-+.+.+....+|- -.+ |+|||||.+.++++..... ..+.+++ .+|.+.+ -|-
T Consensus 164 v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~-----s~l~sk~--------vGe 225 (405)
T 4b4t_J 164 IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSG-----AELVQKY--------IGE 225 (405)
T ss_dssp THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEG-----GGGSCSS--------TTH
T ss_pred HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEh-----HHhhccc--------cch
Confidence 3444566788888752 333 8999999998888876532 2333333 3333322 133
Q ss_pred HHHHHHHHhccCCCCceEEEEcCCCChhhhh----------hhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCC
Q psy9553 972 FSALWRKTLKLKPGDHVWLVLDGPVDSIWIE----------NLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNAS 1041 (1282)
Q Consensus 972 ~~~~~r~~~~~~~~~~~WivfDG~vd~~WiE----------~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~as 1041 (1282)
-.+.+|++........-.|||=-.+|+.--- ..+.++ |.+|+.-.|- .=..++-+|.=+......-
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l--~~lL~~lDg~--~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTM--LELLNQLDGF--ETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHH--HHHHHHHHTT--TCCCCEEEEEEESCSSSSC
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHH--HHHHHhhhcc--CCCCCeEEEeccCChhhCC
Confidence 4555555543222222356663357765321 011111 1222222221 1123455666666666666
Q ss_pred ccchh--ccc-ccccCC
Q psy9553 1042 PATVS--RNG-MVYMSS 1055 (1282)
Q Consensus 1042 PAtvS--Rcg-mvy~~~ 1055 (1282)
||-.- |.. .||++.
T Consensus 302 pAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 302 PALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HHHHSTTSSCCEEECCC
T ss_pred HhHcCCCcCceEEEcCC
Confidence 77762 433 456653
No 321
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=23.67 E-value=31 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.213 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|.+..
T Consensus 9 PSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 89999999998887754
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=23.66 E-value=30 Score=35.81 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.+.|+..+
T Consensus 33 ~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999998754
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=23.50 E-value=32 Score=39.81 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+||||||++++|...+.
T Consensus 175 pnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 175 PTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp STTSCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 799999999999988764
No 324
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=23.34 E-value=47 Score=34.32 Aligned_cols=22 Identities=18% Similarity=-0.096 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
|.|+||||+.+.++..+..-+.
T Consensus 31 ~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp STTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC
Confidence 7899999999999977654343
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=23.32 E-value=26 Score=37.77 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++++|+.-
T Consensus 54 ~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRF 69 (260)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcc
Confidence 8899999999988764
No 326
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.12 E-value=26 Score=38.21 Aligned_cols=16 Identities=31% Similarity=0.046 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 55 ~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAY 70 (279)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999998887654
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=22.93 E-value=26 Score=37.42 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 34 ~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 78999999988887643
No 328
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=22.91 E-value=36 Score=38.33 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=33.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCCCCcccccce
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGR 959 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~i~~~~LyG~ 959 (1282)
.-|.||||+.-.|+.++...|..+-+...+| +=+...+||.
T Consensus 34 KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~ 74 (349)
T 3ug7_A 34 KGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDIFEQ 74 (349)
T ss_dssp SSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHhCC
Confidence 4679999999999999999888877778888 4466777664
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.88 E-value=26 Score=37.94 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 53 ~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNLY 69 (271)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999988887643
No 330
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=22.70 E-value=32 Score=35.49 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
+.||||||+.+.|++
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 578999999999976
No 331
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=22.65 E-value=30 Score=39.62 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||++++|+.-+
T Consensus 55 psGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp STTSSHHHHHHHHHTCS
T ss_pred CCCChHHHHHHHHhCCC
Confidence 89999999999998744
No 332
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.61 E-value=36 Score=35.66 Aligned_cols=18 Identities=17% Similarity=-0.088 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
+.||||||+.+.|++.+.
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 678999999999998874
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.51 E-value=33 Score=34.74 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
+.||||||+.+.|++.
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 6789999999998874
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=22.48 E-value=28 Score=39.48 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMA 932 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~ 932 (1282)
|+||||||++++|..
T Consensus 183 ~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 183 ETGSGKTTLMKALMQ 197 (361)
T ss_dssp SSSSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHh
No 335
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.48 E-value=27 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||++++|+.-+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CSSSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999988887643
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=22.44 E-value=29 Score=35.54 Aligned_cols=17 Identities=29% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 29 ~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 78899999999888754
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.42 E-value=31 Score=36.26 Aligned_cols=16 Identities=25% Similarity=0.009 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||+.++++..
T Consensus 38 pnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7899999999999843
No 338
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.37 E-value=7.3e+02 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhc-HHHHHhcCCCCchhhHHHHHHHhcC
Q psy9553 476 HALKRTIDDFNDMC-PLLELMANKAMKPRHWQRIMEVTKY 514 (1282)
Q Consensus 476 ~~l~~~i~~f~~~l-Pli~~L~~~~lk~RHW~~i~~~~g~ 514 (1282)
..+...++.|+..+ |.+.++ .|||.+..+.+..
T Consensus 212 ~~~~qq~e~f~~~~~p~~e~~------~~~l~~~~e~l~~ 245 (273)
T 3s84_A 212 GHLDQQVEEFRRRVEPYGENF------NKALVQQMEQLRQ 245 (273)
T ss_dssp HHHHHHHHHHHHHHTTHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHH------HHHHHHHHHHHHH
Confidence 46777888887744 888877 6999977765543
No 339
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=22.28 E-value=74 Score=35.38 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=11.4
Q ss_pred CcEEEecCCCCC
Q psy9553 1271 HAVLLIGESGKL 1282 (1282)
Q Consensus 1271 ~~~ll~G~~Gt~ 1282 (1282)
.+++|+||+|||
T Consensus 52 ~~~ll~Gp~G~G 63 (334)
T 1in4_A 52 DHVLLAGPPGLG 63 (334)
T ss_dssp CCEEEESSTTSS
T ss_pred CeEEEECCCCCc
Confidence 689999999999
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.23 E-value=28 Score=37.63 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 41 ~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 41 NTGSGKSTLLQIVAGL 56 (266)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999998887654
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=22.18 E-value=37 Score=35.94 Aligned_cols=17 Identities=18% Similarity=-0.167 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998866
No 342
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=21.97 E-value=3.6e+02 Score=23.32 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=45.6
Q ss_pred HHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccchhhhhhcHHHHHHHHHH
Q psy9553 588 AETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKI 667 (1282)
Q Consensus 588 ~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~yLe~IF~~~dI~~qLp~e~~~F~~v 667 (1282)
++++..|...+..|++.=.-+-...|.....+|...+..+.+.|+ +|...|-.-+..|...
T Consensus 28 ~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~-------------------~i~~~L~~~a~~~~~~ 88 (98)
T 3gwk_C 28 TEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLE-------------------DINQQLLKVADIIEQT 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 345555555555554432334446788899999999999988885 6777888888888888
Q ss_pred HHH
Q psy9553 668 DKS 670 (1282)
Q Consensus 668 d~~ 670 (1282)
|..
T Consensus 89 D~~ 91 (98)
T 3gwk_C 89 DAD 91 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 343
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=21.72 E-value=52 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|+|+|||++...|++.+.
T Consensus 11 ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CTTSCHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHhCc
Confidence 899999999999988763
No 344
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.54 E-value=29 Score=37.42 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.6
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.|+||||++++|+.-
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6789999999888764
No 345
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=21.42 E-value=53 Score=34.82 Aligned_cols=32 Identities=13% Similarity=-0.076 Sum_probs=24.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
+.|+||||+...|+.++. .|..+-+...+|-.
T Consensus 22 kgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV 53 (262)
T ss_dssp STTSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred CCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence 457999999999999998 66665555566753
No 346
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=21.41 E-value=23 Score=39.89 Aligned_cols=16 Identities=13% Similarity=-0.053 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++|+++.-
T Consensus 34 pnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 34 PTGAGKTLFLELIAGF 49 (348)
T ss_dssp CCTHHHHHHHHHHHTS
T ss_pred CCCccHHHHHHHHHcC
Confidence 7899999999988764
No 347
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.17 E-value=61 Score=35.56 Aligned_cols=30 Identities=17% Similarity=-0.131 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeec
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMN 947 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~in 947 (1282)
|.|+||||+...|+.++...|..+-+...+
T Consensus 106 ~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 788999999999999998766554443334
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=21.13 E-value=35 Score=36.32 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAALS 935 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~ 935 (1282)
|.||||||+.+.|++.+.
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 688999999999988764
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=21.08 E-value=62 Score=35.43 Aligned_cols=31 Identities=13% Similarity=-0.097 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
|.|+||||+...|+..+...|..+...-.+|
T Consensus 106 ~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 7889999999999999887665544333333
No 350
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.04 E-value=67 Score=33.62 Aligned_cols=31 Identities=10% Similarity=-0.222 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeeeecc
Q psy9553 918 QWLTRKTTCIHTLMAALSEVEEPHREMRMNP 948 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~~~~~~~~inp 948 (1282)
+.|+||||+.-.++.++...|..+.+..++|
T Consensus 14 kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 6789999998888888877776665555555
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=21.01 E-value=35 Score=38.72 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAA 933 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a 933 (1282)
|.||||||++|+|+.-
T Consensus 62 pnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 62 ASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHhcC
Confidence 8999999988887653
No 352
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=20.92 E-value=30 Score=36.94 Aligned_cols=17 Identities=24% Similarity=-0.037 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.||||||+.+.|++.+
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 79999999999998865
No 353
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=20.72 E-value=56 Score=36.90 Aligned_cols=21 Identities=24% Similarity=0.041 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHHHhcC
Q psy9553 918 QWLTRKTTCIHTLMAALSEVE 938 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~~~~~ 938 (1282)
|.|+||||+++.|+.-+..-+
T Consensus 165 ~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHhhccccC
Confidence 899999999999999876533
No 354
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=20.59 E-value=58 Score=38.18 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=32.6
Q ss_pred ccCCCHHHHHhHHhHHHHHHHHHH-HHhhhCCCCCCCCCChhHHHHHHHHHHHhcCC
Q psy9553 884 TRDLTKIERIKFETLITIHVHQRD-IFDILGPEEVQWLTRKTTCIHTLMAALSEVEE 939 (1282)
Q Consensus 884 ~~~l~~~~r~k~~~Li~i~vh~rD-iv~~lGPeni~~~~GKt~~~~~L~~a~~~~~~ 939 (1282)
-.+|++.|+.-+..++.- +...+ .+--.| |+|+|||+++..+.+++...+.
T Consensus 23 ~~~Ln~~Q~~av~~~~~~-i~~~~~~~li~G----~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKA-IKEKKHHVTING----PAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp SSCCCHHHHHHHHHHHHH-HHSSSCEEEEEC----CTTSCHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHH-HhcCCCEEEEEe----CCCCCHHHHHHHHHHHHHhcCC
Confidence 456778787766555432 22211 111114 6999999999999999987665
No 355
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.48 E-value=36 Score=36.78 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHH
Q psy9553 918 QWLTRKTTCIHTLMAAL 934 (1282)
Q Consensus 918 ~~~~GKt~~~~~L~~a~ 934 (1282)
|.|+||||+.++++..+
T Consensus 81 p~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCcChHHHHHHHHHHHc
Confidence 79999999999988765
No 356
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=20.39 E-value=63 Score=33.17 Aligned_cols=31 Identities=23% Similarity=0.012 Sum_probs=25.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeeeeccCC
Q psy9553 919 WLTRKTTCIHTLMAALSEVEEPHREMRMNPKA 950 (1282)
Q Consensus 919 ~~~GKt~~~~~L~~a~~~~~~~~~~~~inpk~ 950 (1282)
-|.||||+.-.|+.++.+.| ++-....+|..
T Consensus 10 GGvGKTT~a~~LA~~la~~g-~VlliD~D~q~ 40 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR 40 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC
T ss_pred CCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence 36899999999999999888 76666677753
No 357
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=20.17 E-value=34 Score=40.41 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.1
Q ss_pred HhcCCcEEEecCCCCC
Q psy9553 1267 AKQEHAVLLIGESGKL 1282 (1282)
Q Consensus 1267 ~~~~~~~ll~G~~Gt~ 1282 (1282)
+...+++||+||||||
T Consensus 46 ~~~p~gvLL~GppGtG 61 (476)
T 2ce7_A 46 ARMPKGILLVGPPGTG 61 (476)
T ss_dssp CCCCSEEEEECCTTSS
T ss_pred CCCCCeEEEECCCCCC
Confidence 3445789999999999
Done!