RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9553
(1282 letters)
>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2.
Dyneins are described as motor proteins of eukaryotic
cells, as they can convert energy derived from the
hydrolysis of ATP to force and movement along
cytoskeletal polymers, such as microtubules. This region
is found C-terminal to the dynein heavy chain N-terminal
region 1 (pfam08385) in many members of this family. No
functions seem to have been attributed specifically to
this region.
Length = 408
Score = 463 bits (1193), Expect = e-152
Identities = 158/413 (38%), Positives = 251/413 (60%), Gaps = 5/413 (1%)
Query: 409 PELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKG 468
EL ++ KEL L+KL+ LY++ + + + + PW ++ EE+ +E+ +F + RKLPK
Sbjct: 1 EELQELEKELKPLKKLWDLYSEWSESIEEWKNTPWSTIDPEELESEIEKFLKQLRKLPKN 60
Query: 469 LKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNI 528
L+++ LK+ IDDF PL+E + N A+K RHW++I ++ + + E F L ++
Sbjct: 61 LRQYEVAEELKKKIDDFKKSLPLIEDLKNPALKERHWEQIFKLLGFK-DFPDEDFTLGDL 119
Query: 529 LEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTA 588
L+ LL +E+IE+I A KE IE L+++ + W E + + + G LL+G
Sbjct: 120 LDLGLLNYEEEIEEISEQAQKEYSIEKALKKIKDTWEELEFELVPYKDTGTYLLKG--WD 177
Query: 589 ETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVF 648
E I L+D+L+ L S+ ++ Y PF ++ +W L+ E+LE WL VQ WVYLE +F
Sbjct: 178 EIIELLDDNLVTLQSMKASPYVKPFEEEADEWEKKLNLIQEVLELWLKVQRKWVYLEPIF 237
Query: 649 VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELC 708
DI KQLP+E+KRFS +DK W+K+M++A++ P V+ C +L+ L L EQLE
Sbjct: 238 SSSDIKKQLPEESKRFSNVDKEWKKLMKKANKDPNVLEVCNIPGLLE-KLEKLNEQLEKI 296
Query: 709 QKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEY 768
QKSL+ YLE KR FPRF+F+S+ LLEIL Q+ D +Q HL +F+ ++ F E+
Sbjct: 297 QKSLNEYLESKRSAFPRFYFLSNDDLLEILSQSKDPTAVQPHLKKLFEGISSLEFDEEN- 355
Query: 769 NKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLN 821
N +T ++SSEGE + L + V EG+VE WL L + +++L +++ A +
Sbjct: 356 NNITGMISSEGEEVPLSKPVSVEGNVEDWLNELEKEMKETLKKLLKEALQDYD 408
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 47.7 bits (113), Expect = 5e-05
Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 946 MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG-PVDSIWIENL 1004
+NP+ + ++FG D T D+ D + R+ + G + + PV+S ++E+
Sbjct: 1859 LNPRNMR--EIFGHRDELTGDFRDSLKVQDLRRNIH--GGRECLFIFESIPVESSFLEDF 1914
Query: 1005 NSVLDDNRTLTLANG-DRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSG 1057
N +LD+NR L L +G +R+ + ++ +FE +++ + AT++R +VYM +
Sbjct: 1915 NPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEENL 1968
Score = 43.4 bits (102), Expect = 0.001
Identities = 74/630 (11%), Positives = 168/630 (26%), Gaps = 102/630 (16%)
Query: 209 EQLKFGLMTEINSCNRRIAFLLRKKYHRE--MDYVYAVMNEMDRKLDRTITDL-DDVRMI 265
+ K+ + ++S L KY + YA M+ ++ ++ D V
Sbjct: 213 KSGKYVTVATLDS------LLSSSKYSELGRRLHFYANMDFSGIYFPKSFSEFKDSVISA 266
Query: 266 MELLKRIRDQEVDMELK-IEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMT 324
+ + R ++ M + I ++ + D + +E + + +
Sbjct: 267 TQAVSRDIGRQSRMARRLILVQMDSLARLIV-DRICEYVSIEWLGCCEELLTCSMESMSS 325
Query: 325 ANVLLTTMQPRF---------EQDLADNLAQFRQDKVD------YCHEYRTSG---PMMP 366
+ E ++LA F D + ++ G P +P
Sbjct: 326 LVNSFDGEESEAMSLESSLFYEFRGGEHLAGFYSAFGDIKRILLFTWSFKKLGTLLPSLP 385
Query: 367 GLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYK 426
G S ++ + ++ + +
Sbjct: 386 GYSSGGMDYGEEYRSLLWELGSEVGDPDSGPVRKWMRKDLFDAKVRSGVSFGKQEEFVSD 445
Query: 427 LYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFN 486
++N +R+ + EE L + + +K + R FN
Sbjct: 446 IFNITFERIHGMDPTTLEDD--EEDTPALAILL-GQEEAGRFVK----LCKIMRMFSFFN 498
Query: 487 DMCPLLE-LMANKAMKPRHWQRIMEVTKYNFE---LDSESFCLKNIL-------EAPLLK 535
+ +AN+ ++ ++ + S L L
Sbjct: 499 SLEMFSRRTLANRMAIVKYLSSVVRTGPLFLQRDFFGRMSELLMARDMFMEVDGVLRLFF 558
Query: 536 CKEDIEDICISAMKEKD--IEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQ 593
E + +S ++ +E ++ EW L+ R + RG A +
Sbjct: 559 GGEWSGIVQLSGIRRAKRCVERQIDDEIREWCSSVLSDDFLEERAVRVERGADGARRLRA 618
Query: 594 LEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDI 653
S ++ R L M + LE D+
Sbjct: 619 SSGSPVL--------------------------------RRLDEYLMMMSLE------DL 640
Query: 654 AKQLPKEAKRFSKIDKSWQKIMQRA---HETPGVVSCCVGDDMLKLLLPHLQEQLELCQK 710
+P R + + I +R E + VGDD L L ++++
Sbjct: 641 MPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDVGDD-LDLFY----KEMDQVFM 695
Query: 711 SLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNK 770
S+ L + R V + L++ + + + + + ++
Sbjct: 696 SIEKVLGLRWREVERASEVEE--LMDRVRELENRVYSYRFFVKKIAKEEMKTVFS---SR 750
Query: 771 MTHIVSSEGETIQLERAVRAEGS--VESWL 798
+ ++ R V +
Sbjct: 751 IQKKEPFSLDSEAYVGFFRLYEKSIVIRGI 780
Score = 36.1 bits (83), Expect = 0.15
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 963 ATNDWTDGIFSALWRKTLKLKPGD-HVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDR 1021
A + F R+ ++ + D + ++ ++E + + + + G+
Sbjct: 1221 ADMELR-QFFLMFNREDMEARLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGEG 1274
Query: 1022 LSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSS 1056
+++ N+ + V R + Y S S
Sbjct: 1275 -------QVVVS--NLG-SIGDKVGRCLVEYDSIS 1299
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 40.7 bits (96), Expect = 7e-04
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 20/134 (14%)
Query: 923 KTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATND--WTDGIFSALWRKTL 980
K+ L AALS + T + GR ++ W DG
Sbjct: 12 KSELAERLAAALSNRP---VFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL------VR 62
Query: 981 KLKPGDHVWLVLDG--PVDSIWIENLNSVLDDNRTLTLANGDRLSMALA-VKIIFEPHNI 1037
+ G+ VLD + + +L S+LD+ R L G+ + A ++I + +
Sbjct: 63 AAREGEIA--VLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLIATMNPL 120
Query: 1038 D----NASPATVSR 1047
D SPA SR
Sbjct: 121 DRGLNELSPALRSR 134
>gnl|CDD|215890 pfam00386, C1q, C1q domain. C1q is a subunit of the C1 enzyme
complex that activates the serum complement system.
Length = 125
Score = 34.5 bits (80), Expect = 0.072
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 947 NPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDG 994
Q DVA+ S + L+L+ GD VWL L G
Sbjct: 69 QEVVSFYDQAQNGSDVASG-------SVV----LQLQKGDEVWLELHG 105
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of
regulatory proteins has ADP-dependent kinase and
inorganic phosphate-dependent pyrophosphorylase
activity.
Length = 255
Score = 33.6 bits (78), Expect = 0.52
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 401 FGLPTTDYPELAQIRKELNLLQKLYKLYN-DVIDRVSSYYDIPWGEVNIEEINNELM 456
GL + Y L Q R+EL ++L++ VID V++ +IEE ++
Sbjct: 208 LGLDESRYASLEQCREELAYAERLFRRLGIPVID-VTNK--------SIEETAATIL 255
>gnl|CDD|234643 PRK00114, hslO, Hsp33-like chaperonin; Reviewed.
Length = 293
Score = 32.4 bits (75), Expect = 1.2
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 287 EEAYN-VITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDL 340
E R+D P T L R +TA LLT +F+ D+
Sbjct: 23 TETVQEAQERHDYP-------------PTATAALGRTLTATSLLTATL-KFDGDI 63
>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell
motility and secretion].
Length = 204
Score = 31.7 bits (72), Expect = 1.6
Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 236 REMDYVYAVMNEMDRKLDR---TITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNV 292
M + VM ++ + + + +L+ +R IM+L + ++L++E ++E +V
Sbjct: 65 DTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV 124
Query: 293 ITRYDLPVDKEDLEQ 307
+ + D E+L++
Sbjct: 125 VVGDPVLEDLEELDE 139
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologs to these genes in any other organism.
Length = 255
Score = 31.8 bits (72), Expect = 1.7
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 210 QLKFGLMTEINSCN---RRIAFLLRK-----KYHREMDYVYAVMNEMDRKLDRTITDLDD 261
Q L + N CN + IA L K H+E + + +N +D+K + I +
Sbjct: 62 QSTLSLANQFNDCNDDDKEIAHLRNIIDSHIKKHKERNTLPD-LNNVDKKTKKLI---NK 117
Query: 262 VRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPV-DKEDLEQVDSLR 312
++ +E LK+ D E++ EL I+PI + + + V + ED +Q+++ +
Sbjct: 118 LQKELEELKKELDNEMNDELTIQPIHDKIIIKKDENNSVSEHEDFKQLENEK 169
>gnl|CDD|226050 COG3519, COG3519, Type VI protein secretion system component VasA
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 621
Score = 32.3 bits (74), Expect = 2.0
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 157 FLWENEMINRRDVTNVGLVESEHALRRHGE---------LEAELNIEPDLHT-FGSCIVI 206
+ ++ +RR + + VES RR LE L ++P+ G +
Sbjct: 520 YDQRDDASSRRQIEGLVGVESRPVDRRLRGPGPIVPVRGLEITLTLDPEGFVGEGLFLFG 579
Query: 207 SVEQLKFGLMTEINSCNRRIAFLLRKK 233
+V F L INS +R ++
Sbjct: 580 AVLSHFFALYASINSFHRLTLVSTQRG 606
>gnl|CDD|227514 COG5187, RPN7, 26S proteasome regulatory complex component,
contains PCI domain [Posttranslational modification,
protein turnover, chaperones].
Length = 412
Score = 31.8 bits (72), Expect = 2.6
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 220 NSCNRRIAFLLRKKYHREMDYVYAVMNEM-DRKLDRTITDLDDVRM----------IMEL 268
N ++ + L R + M +Y + E + K ++ D RM I EL
Sbjct: 39 NPESKALEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEEL 98
Query: 269 LKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVL 328
+RIR++E D + E E N+ Y +D ++ + +R + ++ + +V
Sbjct: 99 DERIREKEED-NGETEGSEADRNIAEYYCQIMDIQNGFEW--MRRLMRDAMSTGLKIDVF 155
Query: 329 LT 330
L
Sbjct: 156 LC 157
>gnl|CDD|223776 COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport
and metabolism].
Length = 240
Score = 31.2 bits (71), Expect = 2.7
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 34/177 (19%)
Query: 187 LEAELNIEP-DLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVM 245
L L G+ + + +E L+ + L K +
Sbjct: 13 YIVSLPKLWVRLLGMGAGVEVQLEDALEALLISPKELAEEVIELDEK------------I 60
Query: 246 NEMDRKLDRTITDL--------DDVRMIMELLKRIRDQE-VDMELKIEPIEEAYNVITRY 296
++++ +++ L D+R+I+ ++K D E + E +E A N I
Sbjct: 61 DDLEAEIEEEAIRLIALQQPVASDLRLIISIIKISADLERIGDEA----VEIAKNAIVLQ 116
Query: 297 DLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVD 353
D + LE++ + +L A+ A L P +LA ++ + R D+VD
Sbjct: 117 SDEPDLKILEELRRMGEIALSMLKDALDA---LANRDP----ELARDIIE-RDDEVD 165
>gnl|CDD|224913 COG2002, AbrB, Regulators of stationary/sporulation gene expression
[Transcription].
Length = 89
Score = 29.3 bits (66), Expect = 2.8
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 976 WRKTLKLKPGDHVWLVLDGPVDSIWIENLNSV 1007
R+ L +K GD + +++DG I ++
Sbjct: 22 IREALGIKEGDVLEIIVDGDGGRIVLKKYKPA 53
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a
glycogen binding domain, associated with the catalytic
domain of AMP-activated protein kinase beta subunit. E
or "early" set domains are associated with the catalytic
domain of AMP-activated protein kinase beta subunit
glycogen binding domain at the N-terminal end. AMPK is a
metabolic stress sensing protein that senses AMP/ATP and
has recently been found to act as a glycogen sensor as
well. The protein functions as an alpha-beta-gamma
heterotrimer. This N-terminal domain is the glycogen
binding domain of the beta subunit. This domain is also a
member of the CBM48 (Carbohydrate Binding Module 48)
family whose members include pullulanase, maltooligosyl
trehalose synthase, starch branching enzyme, glycogen
branching enzyme, glycogen debranching enzyme, and
isoamylase.
Length = 80
Score = 29.1 bits (66), Expect = 2.8
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 965 NDWTDGI-----FSALWRKTLKLKPGDHVWLVLDGPVDSIWI--ENLNSVLDDNRTL 1014
++W I + T++L PG + + + VD W+ +L +V D+ L
Sbjct: 21 DNWQQPIPLEKSGDGEFSATVELPPGRYEYKFI---VDGEWVHDPDLPTVTDEFGNL 74
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.1 bits (73), Expect = 2.8
Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 408 YPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVN--IEEINNELM--------- 456
++ +++ Q L YN +I ++ ++ + E+ +++ E
Sbjct: 797 SNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEK 856
Query: 457 EFQNRCRKLPKGLKEWPAFH-------ALKRTIDDFNDMCPLLE-LMANKA-MKPRHWQR 507
EF + + +K+ + L I+ N L+E L+ NK +K + Q
Sbjct: 857 EFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQH 916
Query: 508 IMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKL 557
+ + N +E L N L K ++ + D I+ +K IE L
Sbjct: 917 MKIINTDNIIQKNEKLNLLNNLNKEKEKIEKQLSDTKINNLK-MQIEKTL 965
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction
only].
Length = 814
Score = 31.8 bits (73), Expect = 2.9
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 256 ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRY--DLPVDKEDLEQVDSLRY 313
+ D D+ E LKRI++ ++ + EP A+N++ D+ + ++ E + L+
Sbjct: 736 LEDKMDIERAEEFLKRIKEGKITVRELPEPSPFAFNLLVAGSSDVVLMEDRRELIKELK- 794
Query: 314 TWQKLLARAMTANVL 328
++++ L
Sbjct: 795 --KRIMNIIKGLGCL 807
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin. Syntaxins are the prototype family
of SNARE proteins. They usually consist of three main
regions - a C-terminal transmembrane region, a central
SNARE domain which is characteristic of and conserved in
all syntaxins (pfam05739), and an N-terminal domain that
is featured in this entry. This domain varies between
syntaxin isoforms; in syntaxin 1A it is found as three
alpha-helices with a left-handed twist. It may fold back
on the SNARE domain to allow the molecule to adopt a
'closed' configuration that prevents formation of the
core fusion complex - it thus has an auto-inhibitory
role. The function of syntaxins is determined by their
localisation. They are involved in neuronal exocytosis,
ER-Golgi transport and Golgi-endosome transport, for
example. They also interact with other proteins as well
as those involved in SNARE complexes. These include
vesicle coat proteins, Rab GTPases, and tethering
factors.
Length = 103
Score = 29.2 bits (66), Expect = 3.7
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 410 ELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGL 469
E+ +IR+ L LQKL+K D +EE+ E+ + +K K L
Sbjct: 15 EIQKIRQNLEELQKLHKRILTAPDSDKEL------REELEELTQEIKQLARAIKKKLKSL 68
Query: 470 KEW 472
++
Sbjct: 69 QQL 71
>gnl|CDD|191388 pfam05849, L-fibroin, Fibroin light chain (L-fibroin). This family
consists of several moth fibroin light chain (L-fibroin)
proteins. Fibroin of the silkworm, Bombyx mori, is
secreted into the lumen of posterior silk gland (PSG)
from the surrounding PSG cells as a molecular complex
consisting of a heavy (H)-chain of approximately 350 kDa,
a light (L)-chain of 25 kDa and a P25 of about 27 kDa.
The H- and L-chains are disulfide-linked but P25 is
associated with the H-L complex by non-covalent force.
Length = 245
Score = 30.6 bits (69), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 986 DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLAN-GDRLSMALAV 1028
+ +DG +I+I N+ +L+D +A+ GD S A AV
Sbjct: 29 SRAFDYVDGGDKNIYILNVQQILND-----MASQGDYASQASAV 67
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
helicase) [Intracellular trafficking and secretion].
Length = 822
Score = 31.0 bits (71), Expect = 5.4
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 244 VMNEMDRKL-----DRTITDLDDVRMIMELLKRIRDQEVD---------MELKIEPIEEA 289
V+N+ RK+ +R + LD I ++++ + V +E + +
Sbjct: 605 VLNDQ-RKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDE 663
Query: 290 YNVITRYDLPVDKEDLEQVD 309
DLP++K DLE
Sbjct: 664 LKGTVHPDLPINKSDLEDEA 683
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 66,597,923
Number of extensions: 6749256
Number of successful extensions: 6347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6337
Number of HSP's successfully gapped: 41
Length of query: 1282
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1174
Effective length of database: 6,147,370
Effective search space: 7217012380
Effective search space used: 7217012380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.9 bits)