RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9553
(1282 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 614 bits (1584), Expect = 0.0
Identities = 123/549 (22%), Positives = 247/549 (44%), Gaps = 25/549 (4%)
Query: 390 KLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIE 449
+ + G + + +E+ L+ ++ ++ + S + W +
Sbjct: 3 RHHHHHHGGGDYKDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPR 62
Query: 450 EINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIM 509
++ L + + + LP ++++ AF + I + ++ + ++A+K RHW+ +
Sbjct: 63 KVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILK 122
Query: 510 EVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHEL 569
+ N+ L +I ++ L + + ++ +A E +E L+ V W+ EL
Sbjct: 123 KRLNTNW--IITELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLEL 180
Query: 570 TFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNE 629
+ + + +L+ D + +L + L + ++ + Y F ++ W L+
Sbjct: 181 DLVNYQRKCKLVRGWD---DLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRS 237
Query: 630 ILERWLLVQNMWVYLEAVFVG-GDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCC 688
+L+ W+ VQ WVYLE +F G GDI + LP E+ RF I+ + I+++ P ++
Sbjct: 238 LLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVL 297
Query: 689 VGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQ 748
+ + + + L + L QK+L YLE++R F RF+FV D LLEI+G + D IQ
Sbjct: 298 AIERIQQ-TMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQ 356
Query: 749 NHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEG--SVESWLTCLLQMAQ 806
H +F + + E + + S+EGET+ ++ + + WLT + +
Sbjct: 357 KHFRKMFAGLANLTLDD-EKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMK 415
Query: 807 QSLHSIIRTAYTSLNDPNFL----LLQFLDKMPAQIGILGIQMIWTRDAESALSQARHD- 861
+L +++ + N + +++D P Q+ +L Q++W+ + AL
Sbjct: 416 STLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQ 475
Query: 862 ---KKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFD-------I 911
++ + +LN L D +DL+ +R KFE LIT VHQRD+ +
Sbjct: 476 SKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNL 535
Query: 912 LGPEEVQWL 920
G ++ WL
Sbjct: 536 TGNKDFDWL 544
Score = 271 bits (693), Expect = 7e-74
Identities = 94/403 (23%), Positives = 167/403 (41%), Gaps = 52/403 (12%)
Query: 923 KTTCIHTLMAALSEVEEPHREMR-MNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK 981
KTT + A+ +V+ E M+PKAIT Q+FG LD+ T +WTDG+F+A R+ +
Sbjct: 919 KTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIID 978
Query: 982 LKPG---DHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNID 1038
G W++ DG VD W+ENLNS+LDDN+ LTL NG+RL++ V+++FE ++
Sbjct: 979 NVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLK 1038
Query: 1039 NASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEA----------SVFHHLFEESF- 1087
A+ AT+SR GMV+ S L I +L S + + L ++
Sbjct: 1039 YATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQT 1098
Query: 1088 ----PVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEA------------ 1131
P+L + + S + + L + + +
Sbjct: 1099 TITSPILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQ 1158
Query: 1132 -------------ESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGM 1178
S S + E + S+ + + ++ +++L+WG+
Sbjct: 1159 RPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGL 1218
Query: 1179 GAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVN-DEGGWEPWSSMVNTYS 1237
G + L R F F++ T + + D+ V+ D+ W W + V +
Sbjct: 1219 GGSMGLVERENFSKFIQTIAITPVP------ANTIPLLDYSVSIDDANWSLWKNKVPSVE 1272
Query: 1238 YPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESG 1280
+ +++P D R +++ + ++L G G
Sbjct: 1273 VETHKVA-SPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPG 1314
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 471 bits (1213), Expect = e-139
Identities = 102/574 (17%), Positives = 201/574 (35%), Gaps = 69/574 (12%)
Query: 391 LQTYQSGEELFGLPTTDYPELA-QIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIE 449
+++ + GL +P L I ++ L Q + +I ++ +++ G
Sbjct: 37 GDKWRNKKFELGLE---FPNLPYYIDGDVKLTQSM-----AIIRYIADKHNMLGGCPKER 88
Query: 450 EINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIM 509
E+ + + G+ + DF P + M + + +
Sbjct: 89 ---AEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGD 145
Query: 510 EVTKYNFELD---------------------------------SESFCLKNILEAPLLKC 536
VT +F L + + PL
Sbjct: 146 HVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGW 205
Query: 537 KEDIEDIC-ISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLE 595
+ E IE L ++ W + + ++ +L+ D +
Sbjct: 206 QATFGGGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWD---VLEQACK 262
Query: 596 DSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGG-DIA 654
+ L L S+ ++ Y F + L+ +EI W+ VQ W+ L + DI
Sbjct: 263 EDLEELVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQ 322
Query: 655 KQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSG 714
LP E +F + ++ I RA + + + L + L++ + SLS
Sbjct: 323 NFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTL-KLTIDSLKMIKSSLST 381
Query: 715 YLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHI 774
+LE++R FPRF+F+ + LL+I+G + + +F + +++ F E + +T +
Sbjct: 382 FLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE---DFITGV 438
Query: 775 VSSEGETIQLERAVRAEGS--VESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLD 832
S EGE + L + + S + WL L + S+ + R + D + +
Sbjct: 439 RSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTD-IEVVVS 497
Query: 833 KMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIER 892
K Q +L Q++WT E L + K E + + LL+ L + +
Sbjct: 498 KYIFQAILLSAQVMWTELVEKCLQTNQ-FSKYWKEVDMKIKGLLDKL-----NKSSDNVK 551
Query: 893 IKFETLITIHVHQRDIFDILGPEEV------QWL 920
K E L+ ++H ++ L W
Sbjct: 552 KKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWA 585
Score = 339 bits (871), Expect = 6e-96
Identities = 68/375 (18%), Positives = 149/375 (39%), Gaps = 50/375 (13%)
Query: 923 KTTCIHTLMAALSEVEE-PHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLK 981
KT T++ A++ + + ++ K +T ++G + AT +W DG+F+++ R+
Sbjct: 936 KTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVND 995
Query: 982 ----LKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNI 1037
+W+V D +D ++E +NSVLDDN+ LTL NG+RL + +I+FE N+
Sbjct: 996 DITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNL 1055
Query: 1038 DNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEAS------------VFHHLFEE 1085
D+ +PAT++R G+++ S+ S + L + + F+
Sbjct: 1056 DHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDM 1115
Query: 1086 SFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPL 1145
+ + +L +++ V N ++ + L L+
Sbjct: 1116 ASLTNIFTCSNDLVHILGVRTFNKLETAVQLAVHLI------------------------ 1151
Query: 1146 EEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLP 1205
+ Q+L K + + L +L++ + + F +
Sbjct: 1152 --SSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTY------FG 1203
Query: 1206 SNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNC 1265
++ + ND+ + + S + + S + I++P D ++ + +
Sbjct: 1204 HDSQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVM-RPDIVIPTIDTIKHEKIFYD 1262
Query: 1266 IAKQEHAVLLIGESG 1280
+ + ++L G G
Sbjct: 1263 LLNSKRGIILCGPPG 1277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 111 bits (277), Expect = 1e-24
Identities = 104/681 (15%), Positives = 201/681 (29%), Gaps = 190/681 (27%)
Query: 234 YHREMDYVYAVMNEMDRK--------LDRTITDLDDVRMIMELLKRI-RDQEVDMELKIE 284
+H MD+ E + D + + D + + ++ K I +E+D + +
Sbjct: 3 HHHHMDFE---TGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEID-HIIMS 57
Query: 285 P--IEEAYNVITRYDLPVDKED------LEQVDSLRYTW----------QKLLARAM--- 323
+ + + K++ +E+V + Y + Q + M
Sbjct: 58 KDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 324 TANVLLTTMQ-------PRFEQ--DLADNLAQFRQDKVDYCHEYRTSGPMMPG-----LS 369
+ L Q R + L L + R K G + G ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----G--VLGSGKTWVA 167
Query: 370 PREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLY-KLY 428
+ + F W L+ S E + L +LQKL ++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----------------LEMLQKLLYQID 210
Query: 429 NDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHAL--------KR 480
+ R +I + I I EL R+L LK P + L +
Sbjct: 211 PNWTSRSDHSSNIK---LRIHSIQAEL-------RRL---LKSKPYENCLLVLLNVQNAK 257
Query: 481 TIDDFNDMCPLLELMANK----AMKPRHWQRI-MEVTKYNFELD-SESFCLKNILEAPLL 534
+ FN C +L K + I ++ D +S LK L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------L 311
Query: 535 KCK-EDI-EDIC-ISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETI 591
C+ +D+ ++ + + I +R W + N D I
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNC--------DKLTTII 359
Query: 592 GQLEDSLMVLGS-LLSNRYN--APFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVF 648
E SL VL ++ + F +L +W +
Sbjct: 360 ---ESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSL------IWFDVIKSD 403
Query: 649 VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKL---LLPHLQEQL 705
V + +L ++S ++K ++ + ++ L ++ H
Sbjct: 404 V-MVVVNKL----HKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPK 457
Query: 706 ELCQKSLS------------GY-LEKKRM-----MFPRFFFVSDPALLEILGQA-SDSHT 746
L G+ L+ +F F D L Q T
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--D---FRFLEQKIRHDST 512
Query: 747 IQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVR------AEGSVESWLTC 800
N SI + + ++F++ +I ++ + +L A+ E + S T
Sbjct: 513 AWNASGSILNTLQQLKFYKP------YICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 801 LLQMAQQSLHS-IIRTAYTSL 820
LL++A + I A+ +
Sbjct: 567 LLRIALMAEDEAIFEEAHKQV 587
Score = 96.8 bits (240), Expect = 2e-20
Identities = 96/638 (15%), Positives = 195/638 (30%), Gaps = 195/638 (30%)
Query: 118 YSHVMENKEVVKTLSLLSTCTLDIKPALVS-FVEKW--SPYKFLWE-------------N 161
H++ +K+ V L L + +V FVE+ YKFL
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 162 EMINRRDVT----------NVGLVESEHALRRHGELEAELNIEPDLHTFG------SCIV 205
I +RD NV ++ LR+ L EL ++ G + +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LL-ELRPAKNVLIDGVLGSGKTWVA 167
Query: 206 ISV-------EQLKFGL--MTEINSCNR---------RIAFLLRKKYHREMDYVYAV--- 244
+ V ++ F + + + +CN ++ + + + D+ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 245 MNEMDRKLDRTITD---------LDDVRMIMELLKRIRDQEV----DMELKIEPIEEAYN 291
++ + +L R + L +V ++ + ++ KI
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV----------QNAKAWNAFNLSCKIL------- 269
Query: 292 VITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNL-AQF-RQ 349
+ TR K+ + + + T ++ L D +L ++
Sbjct: 270 LTTR-----FKQVTDFLSAATTT-----------HISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 350 DKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYP 409
D E T+ P + D L + N W+ + + L T
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-----WKHVNCDK-------LTTI--- 358
Query: 410 ELAQIRKELNLLQ--KLYKLYND-VIDRVSSYYDIP-------WGEVNIEEINNELMEFQ 459
I LN+L+ + K+++ + S+ IP W +V ++ + +
Sbjct: 359 ----IESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 460 NRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELD 519
L +++ P +I LEL + + I V YN
Sbjct: 413 KYS--L---VEKQP--KESTISIPSI-----YLELKVKLENEYALHRSI--VDHYNIP-- 456
Query: 520 SESFCLKNILEAPL-----------LKCKEDIEDICISAMKEKD---IEAKLRQVTNEWS 565
++F +++ L LK E E + + M D +E K+R + W+
Sbjct: 457 -KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 566 VHEL---TFMTFNNRGELLLRGDTTAET-IGQLEDSLMVLGSLLSNRYNAPFRKQIQQWV 621
T + D E + + D L + N + + ++
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE---ENLICSKYTDLLR--- 569
Query: 622 FDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPK 659
L +E ++ EA KQ+ +
Sbjct: 570 IALMAEDE-----------AIFEEA-------HKQVQR 589
Score = 64.9 bits (157), Expect = 2e-10
Identities = 66/486 (13%), Positives = 140/486 (28%), Gaps = 150/486 (30%)
Query: 515 NFELDSESFCLKNILEAPL------LKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHE 568
+FE + K+IL CK D++D+ S + +++I+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEID----HIIMSKDAVS 62
Query: 569 LTFMTFNNRGELLLRGDTTAETIGQLEDSLMV----LGSLLSNRYNAP--FRKQIQQWVF 622
T F LL + + + +E+ L + L S + P + +
Sbjct: 63 GTLRLF---WTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 623 DLSNTNEI--------------LERWL--LVQNMWVYLEAVFVGGDIAKQ-LPKEAKRFS 665
L N N++ L + L L V ++ V G K + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLG-SGKTWVALDVCLSY 174
Query: 666 KIDKS------WQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKK 719
K+ W + C + +L++L L Q++ S S +
Sbjct: 175 KVQCKMDFKIFWLNLKN----------CNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNI 223
Query: 720 RMMF------PRFFFVSDP---ALLEILGQASDSHTIQNHLLSIFDN-------TKAVRF 763
++ R S P LL +L ++ F+ T+ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWN-----AFNLSCKILLTTRFKQV 277
Query: 764 HEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTC----------------------- 800
+ T +S + ++ L + + +L C
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 801 ----------LLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLD--------KMPAQIGILG 842
+ L +II ++ L +P F +P +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL---- 391
Query: 843 IQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIH 902
+ +IW + ++++ + L +E+ E+ I+I
Sbjct: 392 LSLIWFDVIK------SDVMVVVNKLHKYSL----------------VEKQPKESTISIP 429
Query: 903 VHQRDI 908
++
Sbjct: 430 SIYLEL 435
Score = 62.9 bits (152), Expect = 6e-10
Identities = 73/494 (14%), Positives = 141/494 (28%), Gaps = 116/494 (23%)
Query: 29 RISSGPPPIFLLDAKLRIPSVVISPPLEEVQEAL--------IT------AGKHITGVAK 74
R+ + AK +V P ++++AL + +GK T VA
Sbjct: 118 RLYNDNQVF----AKY---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVAL 168
Query: 75 GVAQWTGGEAQHITGVAKGVAQW-TGGEAQRKKKPSFPLQPRNFYSHVMEN-KEVVKTLS 132
V + + + W + LQ + N S
Sbjct: 169 DVCLSYKVQCKMDFKIF-----WLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSS 221
Query: 133 LLSTCTLDIKPALVSFVEKWSPYKF-------LWENEMINR-----------RDVTNVGL 174
+ I+ L + K PY+ + + N R
Sbjct: 222 NIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 175 VESEHALRRHGELE-AELNIEPD--LHTFGSCIVISVEQLKFGLMTEINSCNRR----IA 227
+ + H L+ + + PD + + L E+ + N R IA
Sbjct: 281 LSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----REVLTTNPRRLSIIA 334
Query: 228 FLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDME-LKIEPI 286
+R ++ + +++ ++ ++ L+ E K V I P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYRKMFDRLSVFPPSAHI-PT 389
Query: 287 EEAYNVITRYDLPVDKEDLEQVD------SLRYTWQKLLARAMTANVLLTTMQPRFEQDL 340
+++ V K D+ V SL K ++ + L ++ E L
Sbjct: 390 I----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 341 ADNLAQFRQDKVDYCHEYRTSGPMMPG---------LSPREASDRLILFQNRF-DGMW-- 388
++ + + P + L E +R+ LF+ F D +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 389 RKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNI 448
+K+ + LN LQ+L K Y I Y
Sbjct: 505 QKI-------RHDSTAWNASGSI------LNTLQQL-KFYKPYICDNDPKY--------- 541
Query: 449 EEINNELMEFQNRC 462
E + N +++F +
Sbjct: 542 ERLVNAILDFLPKI 555
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 1e-08
Identities = 96/664 (14%), Positives = 174/664 (26%), Gaps = 232/664 (34%)
Query: 179 HALR----RHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKY 234
++ R HG LE L + S QL+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIAS-------QLQ---------------------- 34
Query: 235 HREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVIT 294
+ ++ E D+ EL+ + L Y ++
Sbjct: 35 ----EQFNKILPEPTEGF----AADDEPTTPAELVGKF--------L-------GY--VS 69
Query: 295 RYDLPVDKEDLEQVDSLRYTWQKLLARAMTAN---VLLTTMQPRFEQDLADNLAQFRQDK 351
P +QV L + + N L + + L +
Sbjct: 70 SLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-- 125
Query: 352 VDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFG--LPTTDY- 408
Y + S LF+ +G Q +FG T DY
Sbjct: 126 --Y---ITARIMAKRPFDKKSNS---ALFRAVGEG---NAQLVA----IFGGQGNTDDYF 170
Query: 409 PELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEF---QNRCRKL 465
E L+ LY+ Y+ ++ + I+ L E K+
Sbjct: 171 EE----------LRDLYQTYHVLVGDL------------IKFSAETLSELIRTTLDAEKV 208
Query: 466 -PKGL--KEWPAFHALKRTID--DFNDM------CPLLEL--MANKAMKPRHWQRIMEVT 512
+GL EW L+ + D + + CPL+ + +A H+ ++
Sbjct: 209 FTQGLNILEW-----LENPSNTPDKDYLLSIPISCPLIGVIQLA-------HYVVTAKLL 256
Query: 513 KYNFE-----LDSESFCLKNILEAPLL---KCKEDIEDICISAMK--------------E 550
+ L + + ++ A + E A+
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 551 KDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYN 610
+ + + + E + + M L + T Q++D + N +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPM-------LSISN----LTQEQVQDYVNKT-----NSH- 359
Query: 611 APFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGD------IAKQLPKEAKRF 664
P KQ++ +S N V V G + L ++AK
Sbjct: 360 LPAGKQVE-----ISLVNG--------AKNLV------VSGPPQSLYGLNLTL-RKAKAP 399
Query: 665 SKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLP-----H---LQEQLELCQKSLSGY- 715
S +D+S +R + LP H L +L K L
Sbjct: 400 SGLDQSRIPFSERK---LKFSNR---------FLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 716 --LEKKRMMFPRFFFV--SDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKM 771
K + P + SD + + + I V++ K
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDL-------RVLSGSISERIVDCII--RLPVKWETTTQFKA 498
Query: 772 THIV 775
THI+
Sbjct: 499 THIL 502
Score = 58.5 bits (141), Expect = 2e-08
Identities = 93/558 (16%), Positives = 164/558 (29%), Gaps = 204/558 (36%)
Query: 787 AVR----AEGSVE-SWL--TCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIG 839
+ R + GS+E L T +A Q L + QF +P
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQ------------LQE------QFNKILPEPTE 46
Query: 840 ILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQT----TRDLTKIERIKF 895
D E + A E +FL +++L++ + + + +F
Sbjct: 47 GF------AADDEPT-TPA--------ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 896 ETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNP-KA-ITA 953
E L + IH L A L + + K ITA
Sbjct: 92 EN------------CYLEGND----------IHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 954 AQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWI----ENLNSVLD 1009
M R ++ SAL+R V +G + I N + +
Sbjct: 130 RIMAKRPFDKKSN------SALFRA------------VGEGNAQLVAIFGGQGNTDDYFE 171
Query: 1010 DNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069
+ R L + L +I + T V+ + GL+ + WL
Sbjct: 172 ELRDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLN----ILEWLE 220
Query: 1070 GRSAK-------EASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNY------------- 1109
S + S P++ A+ K+L
Sbjct: 221 NPSNTPDKDYLLSIPI-------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 1110 ----------------------VQQMLILL-------QGLVPTST--PTVTEAESTEEG- 1137
V++ + +L P ++ P++ E +S E
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNE 332
Query: 1138 GAPSP------APLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAF------LELP 1185
G PSP E+ ++ ++ + L P + + +LV G L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNK--TNSHL-PAGKQ-VEI-SLVNGAKNLVVSGPPQSLY 387
Query: 1186 GRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSY---PENS 1242
G +L LR+ A +G Q+ + P+S +S P +
Sbjct: 388 G---LNLTLRKAKAP-------SGLDQSRI------------PFSERKLKFSNRFLPV-A 424
Query: 1243 TPDYSSILVPIADNVRID 1260
+P +S +LVP +D + D
Sbjct: 425 SPFHSHLLVPASDLINKD 442
Score = 48.9 bits (116), Expect = 1e-05
Identities = 70/452 (15%), Positives = 128/452 (28%), Gaps = 154/452 (34%)
Query: 727 FFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLER 786
F P E + T L+ F + + + +++ + E
Sbjct: 37 FNKILPEPTEGFAADDEPTTPA-ELVGKFLGYVSSLVEPSKVGQFDQVLNLC--LTEFEN 93
Query: 787 AVRAEGSVESWLTCLLQMAQQSL---HSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGI 843
+ + LLQ +L +I+ T+ + K P
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI---------MAKRPF------- 137
Query: 844 QMIWTRDAESALSQA--RHDKKMMS------ETNNRFLEL----------LNTLIDQTTR 885
+ + SAL +A + ++++ T++ F EL + LI +
Sbjct: 138 ----DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 886 DLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRK---------------------T 924
L+++ R + +IL +WL
Sbjct: 194 TLSELIRTTLDA----EKVFTQGLNIL-----EWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 925 TCIHTLMAALSEVEEPHREMRMNPKAIT-------AAQMFGRLDVATNDWTDGIFSALWR 977
H + + E+R K T A T+ W F R
Sbjct: 245 QLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA----ETDSWES--FFVSVR 297
Query: 978 KTLKLKPGDHVWLVLDG-------PVDSIWIENLNSVLDDNRTLTLANGDRL--SMALAV 1028
K + L G P S+ S+L+D +L N + + M L++
Sbjct: 298 KAIT-------VLFFIGVRCYEAYPNTSLPP----SILED----SLENNEGVPSPM-LSI 341
Query: 1029 KII----FEPHNID--NAS-PAT----VS-RNG---MVYMSSSGLDWSPI----VAAWLR 1069
+ + + ++ N+ PA +S NG +V SG P + LR
Sbjct: 342 SNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVV---SG---PPQSLYGLNLTLR 394
Query: 1070 GRSA------------KEASVFHHLFEESFPV 1089
A + F + F PV
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRF---LPV 423
Score = 45.4 bits (107), Expect = 1e-04
Identities = 96/645 (14%), Positives = 186/645 (28%), Gaps = 220/645 (34%)
Query: 389 RKLQ-TYQSGEELFGLPTTDYPELAQIRKEL--NLLQKLYKLYNDVIDRVSSYYDIPWGE 445
R L ++ S E + +PT + +Q++++ L + D D ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTT-------- 56
Query: 446 VNIEEINNELMEF-QNRCRKLPKGLKEWPAFHALKRTIDDF-------NDM----CPLLE 493
E+ + + + + G + L + +F ND+ LL+
Sbjct: 57 --PAELVGKFLGYVSSLVEPSKVGQFD----QVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 494 LMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKE--K 551
+K + + Y + + + P K SA+
Sbjct: 111 ENDTTLVKTKELIKN-----Y--------ITARIMAKRPFDKKSN-------SALFRAVG 150
Query: 552 DIEAKLRQVTNEWSVHELTFMTFNNRG-------ELLLRGDTTAETIGQL-EDSLMVLGS 603
+ A+L F +G EL T +G L + S L
Sbjct: 151 EGNAQL-------------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 604 LLSNRYNAP--FRK--QIQQWVFDLSNTNEILER-WL-----------LVQNMWVYLEAV 647
L+ +A F + I +W L N + ++ +L ++Q + A
Sbjct: 198 LIRTTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 648 FVG---GDIAKQLPKEAKRFSKI--------DKSWQ-------KIMQ-------RAHET- 681
+G G++ L + SW+ K + R +E
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 682 ------PGVVSCCVGDD------MLK---LLLPHLQEQLELCQKSLSGYLEKKRMMF--- 723
P ++ + ++ ML L +Q+ + L K++
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP---AGKQVEISLV 371
Query: 724 --PRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGET 781
+ VS G + + L KA +Q + I S
Sbjct: 372 NGAKNLVVS--------GPPQSLYGLNLTLRKA----KAPSGLDQ-----SRIPFS---- 410
Query: 782 IQLERAVRAEGSVESWLTCLLQMAQQSL--HSIIRTAYTSLNDPNFLLLQFLDKMPAQIG 839
ER ++ L + + HS L + L+ + D + +
Sbjct: 411 ---ERKLKFS-------NRFLPV---ASPFHS----HL--LVPASDLINK--DLVKNNVS 449
Query: 840 I----LGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKF 895
+ I + T D D +++S + ++D R +K+
Sbjct: 450 FNAKDIQIPVYDTFDGS--------DLRVLSG------SISERIVDCIIR-----LPVKW 490
Query: 896 ETLITIHV-HQRDIFDILGPEEVQWLTRKT------TCIHTLMAA 933
ET H I D GP L T T + ++A
Sbjct: 491 ETTTQFKATH---ILD-FGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 42.7 bits (100), Expect = 9e-04
Identities = 48/357 (13%), Positives = 95/357 (26%), Gaps = 119/357 (33%)
Query: 51 ISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGEAQRKKKP-- 108
L V + + + + ++ + + E G+ + +W + K
Sbjct: 179 TYHVL--VGDLIKFSAETLSELIRTTLDA---EKVFTQGLN--ILEWLENPSNTPDKDYL 231
Query: 109 -----SFPL----QPRNFY----SHVMENKEVVKTLSLLSTCTLDIKPALV--------S 147
S PL Q ++ E+ L + + + A+ S
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 148 FVE------KWS-----------PYKFLW--------ENE------MINRRDVTNVGLVE 176
F P L EN M++ ++T + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 177 SEHALRRHGELEAELNIEPDLHTFGSCIVIS--VEQLKFGLMTEI------NSCNR-RIA 227
+ H ++ I L +V+S + L +GL + + ++ RI
Sbjct: 352 YVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIP 408
Query: 228 FLLRKK------------YHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQ 275
F RK +H + D DL
Sbjct: 409 FSERKLKFSNRFLPVASPFHS--HL-------LVPASDLINKDL-------------VKN 446
Query: 276 EVDM---ELKIEPIEEAYNVITRYDLPVDKEDL-----EQVDSLRYTWQKLLARAMT 324
V +++I P+ Y+ DL V + + + L W+ T
Sbjct: 447 NVSFNAKDIQI-PV---YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Score = 36.6 bits (84), Expect = 0.073
Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 51/176 (28%)
Query: 1114 LILLQG------LVPTSTPTVTEAESTEEGGAPSPAPLEE---DEEAKSEQDLCTK-LSP 1163
L L G LVPT++ + + E+ P P E D+E + +L K L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG- 66
Query: 1164 EHLHRLYVFALV--WGMGAFLELPGRVKFDLFLREKLATLLD------LPSNAGDPQATV 1215
YV +LV +G F ++ L L L N D A
Sbjct: 67 ------YVSSLVEPSKVGQFDQV-------------LNLCLTEFENCYLEGN--DIHALA 105
Query: 1216 FDFYVNDEGGWEPWSSMVNTYSY------PENSTPDYSSILVPIAD--NVRIDYLV 1263
++ ++ Y +S L N ++ +
Sbjct: 106 AKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAI 159
Score = 36.2 bits (83), Expect = 0.10
Identities = 57/317 (17%), Positives = 87/317 (27%), Gaps = 133/317 (41%)
Query: 1012 RTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSS-------SGLDWSPIV 1064
R LTL++G L L V P A+ + + D P
Sbjct: 7 RPLTLSHGS-LEHVLLV-----PTAS--FFIASQLQEQ--FNKILPEPTEGFAADDEPTT 56
Query: 1065 AAWLRGR---------SAKEASVFHHL-------FEESFPVLYAWG------AANL---- 1098
A L G+ + F + FE + L G AA L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--L--EGNDIHALAAKLLQEN 112
Query: 1099 -SYVMKVLQV--NYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQ 1155
+ ++K ++ NY+ ++ + S + A EG A
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNA---------------- 154
Query: 1156 DLCTKLSPEHLHRLY-VFALVWGMGA----FLEL-------PGRVKFDLFLR--EKLATL 1201
+L +F G G F EL V DL E L+ L
Sbjct: 155 ------------QLVAIFG---GQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSEL 198
Query: 1202 LDLPSNAGDPQATVFDFYVNDEGGW--EPWSSMVNTYSYPENSTPD--Y-SSILV--PIA 1254
+ +A + W P ++TPD Y SI + P+
Sbjct: 199 IRTTLDAEKVFTQGLNIL-----EWLENP------------SNTPDKDYLLSIPISCPL- 240
Query: 1255 DNVRI------DYLVNC 1265
I Y+V
Sbjct: 241 ----IGVIQLAHYVVTA 253
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 36.8 bits (84), Expect = 0.053
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 217 TEINSCNRRIAFLLRKKY--HREMDYVYAVMNEMDRKLDRTITDL-----DDVRMIMELL 269
+ +S I +LR + D Y N + L I L + V+ I L
Sbjct: 81 KDSHSLTTNIMEILRGDFSSANNRDNTY---NRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137
Query: 270 KRIRDQ-------EVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARA 322
K +R Q EVD+++KI + + + VD +D E QK L +
Sbjct: 138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALARE--VDLKDYEDQ-------QKQLEQV 188
Query: 323 MTANVL 328
+ ++L
Sbjct: 189 IAKDLL 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.089
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 459 QNRCRKLPKGLKEW-----PAFHALKRTID 483
+ +KL LK + PA A+K T++
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIKATME 47
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 34.2 bits (78), Expect = 0.26
Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%)
Query: 232 KKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYN 291
K R++ A ++ + + + +D+ +++ K+ +D ++ + +E YN
Sbjct: 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDN--KLVKTQKQRKDNDIILSEYNTEMELHYN 156
Query: 292 VITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDK 351
I +D + LR L + + T +
Sbjct: 157 YIKD---NLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRSPCVASCNIPVVSG 213
Query: 352 VDYCHEYRTSGPMMPG---LSPREASDRL-------------ILFQNRFDGM---WRKLQ 392
+ C + G + P + L QNR DG R
Sbjct: 214 RE-CEDIYRKGGETSEMYIIQPDPFTTPYRVYCDMETDNGGWTLIQNRQDGSVNFGRAWD 272
Query: 393 TYQSGEELFG-LPTTDYPELAQIRKELNL-LQKLYKL 427
Y+ G FG + + + E L K+ +L
Sbjct: 273 EYKRG---FGNIAKSGGKKYCDTPGEYWLGNDKISQL 306
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 34.1 bits (78), Expect = 0.31
Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 32/195 (16%)
Query: 232 KKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIME-----LLKRIRDQEVDMELKIEPI 286
Y ++D + ++ +++ +++ + ++ + LK +
Sbjct: 30 STYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKM 89
Query: 287 EEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQ 346
E I +Y+ + D + L+ + + + + ++ + ++ D +
Sbjct: 90 LEE---IMKYEASILTHD-SSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQI 145
Query: 347 FRQDKVDYCHEYRTSGPMMPGL---SPREASDRL-------------ILFQNRFDGM--- 387
D C + G GL P +A+ + +FQ R DG
Sbjct: 146 HDITGKD-CQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDF 204
Query: 388 WRKLQTYQSGEELFG 402
+ Y+ G FG
Sbjct: 205 KKNWIQYKEG---FG 216
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 33.0 bits (75), Expect = 0.77
Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 26/191 (13%)
Query: 233 KYHREMDYVYAVMNEMDRKLDRTITDLDD--VRMIMELLKRIRDQEVDMELKIEPIEEAY 290
KY D + + ++ + ++ + + +E + ++
Sbjct: 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKII 90
Query: 291 NVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQD 350
I RY+ + + + L + + ++ ++ D
Sbjct: 91 EEIIRYENTILAHE-NTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPCKDTAEIQETT 149
Query: 351 KVDYCHEYRTSGPMMPGL---SPREASDRL-------------ILFQNRFDGM---WRKL 391
D C + G GL P++A + Q R DG R
Sbjct: 150 GRD-CQDIANKGARKSGLYFIKPQKAKQSFLVYCEIDTYGNGWTVLQRRLDGSEDFRRNW 208
Query: 392 QTYQSGEELFG 402
Y+ G FG
Sbjct: 209 VQYKEG---FG 216
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 31.8 bits (73), Expect = 1.5
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 256 ITDLDDVRMIMELLK-----RIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310
+ D D + M +LK D + E+ + + EA + + + + +EDLE+ +
Sbjct: 26 LLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKA 85
Query: 311 LRYTWQKLLARA 322
L +++ R
Sbjct: 86 L-----RIIVRI 92
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 31.6 bits (71), Expect = 2.1
Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 182 RRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYV 241
+L + L ++ ++ L EI+ N + + +D
Sbjct: 37 NDRDDLLKLIENNARL----CGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVS 92
Query: 242 YAVMNEMDRKLDRTITDLDDV-RMIMELLKRIRDQ 275
+ + + +D+ I + +
Sbjct: 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEYINT 127
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 30.3 bits (69), Expect = 3.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 410 ELAQIRKELN----------LLQKLYKL--YNDVIDRVSSYYDIPWGEVNIEEINNELME 457
++ Q R L+ + QKL I ++ Y I EV + E ++
Sbjct: 34 QILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK-NEVTFVDFFFEFLK 92
Query: 458 FQNRCRKLPK 467
PK
Sbjct: 93 INQIRAVYPK 102
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 29.9 bits (67), Expect = 5.0
Identities = 10/97 (10%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 229 LLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEE 288
L +++ ++ A+++ + L D + +++ D ME + +
Sbjct: 107 LGFQEFQKDAKQAEAILSNQEYTLAHLEPP-DSLEAAEAGIRKFEDFLGSMENNRDKVLS 165
Query: 289 AYNVITRY--DLPVDKEDLEQ-VDSLRYTWQKLLARA 322
+ + + + + +++ V + +K +A
Sbjct: 166 PVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 202
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.8 bits (67), Expect = 6.5
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 5/117 (4%)
Query: 237 EMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRI----RDQEVDMELKIEPIEEAYNV 292
E + + E D + + T D VR + + ++ ++EV++ K+E EA
Sbjct: 57 EGEGLDLEEEEEDLPIPKISTS-DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKK 115
Query: 293 ITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQ 349
++ E V + ++ L +Q L + ++
Sbjct: 116 LSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKR 172
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural
genomics, PSI-2, protein structure initiative; NMR
{Shigella flexneri}
Length = 108
Score = 28.1 bits (62), Expect = 8.0
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 345 AQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLP 404
+ RQ V E + + + ++ W + +G + GL
Sbjct: 9 PEVRQRAVRMVLESQGEYDSQ-WATICSIAPKIGCTPETLRV-WVRQHERDTGGDDGGLT 66
Query: 405 TTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSY 438
T + L + +E L + ND++ S+Y
Sbjct: 67 TAERQRLKEPERENREL----RRSNDILRLASAY 96
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.1 bits (65), Expect = 8.8
Identities = 34/217 (15%), Positives = 77/217 (35%), Gaps = 36/217 (16%)
Query: 159 WENEMINRRDVTNVG--LVESEHALRRHGELEAELNIEPD----LHTFGSCIVISVEQLK 212
W +E+ + G L + L++H LEA+++ D L++ ++ S
Sbjct: 18 WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT 77
Query: 213 FGLMTEINSCNRRIAFLLRK---------------KYHREMDYVYAVMNEMDRKLDRTIT 257
+ + + N R + ++ R+MD + + E +
Sbjct: 78 SQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDY 137
Query: 258 --DLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTW 315
DL V+ + + KR+ + E I+ + + ++ + +E +++ W
Sbjct: 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHW 197
Query: 316 QKLLARAMTANVLLTTMQPRFEQDLADNLA--QFRQD 350
++L A Q L ++L QF +
Sbjct: 198 KELKQLA-----------AARGQRLEESLEYQQFVAN 223
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 29.2 bits (65), Expect = 9.2
Identities = 33/237 (13%), Positives = 66/237 (27%), Gaps = 36/237 (15%)
Query: 213 FGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRI 272
L + R I + E++ +++ + + L D + + K++
Sbjct: 80 CQLQEALLQQERPI-----RNSVDELNNNVEAVSQTSSSSFQYMYLLKD--LWQKRQKQV 132
Query: 273 RDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTM 332
+D E + +E+ D V+ + LR + L ++ ++
Sbjct: 133 KDNENVVNEYSSELEKH---QLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQ 189
Query: 333 QPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPG---LSPREASDRL------------ 377
+ + C E G + P +
Sbjct: 190 MEYCRTPCTVSCNIPVVSGKE-CEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGG 248
Query: 378 -ILFQNRFDGM---WRKLQTYQSGEELFGLPTTDYPELAQIRKELNL---LQKLYKL 427
+ QNR DG RK Y+ G FG T+ K+ +L
Sbjct: 249 WTVIQNRQDGSVDFGRKWDPYKQG---FGNVATNTDGKNYCGLPGEYWLGNDKISQL 302
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 29.3 bits (66), Expect = 9.9
Identities = 7/67 (10%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 242 YAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYD-LPV 300
+ ++++ + + R I LK + +++ + R++ +
Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242
Query: 301 DKEDLEQ 307
+ E L+
Sbjct: 243 ETEQLKA 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,897,291
Number of extensions: 1238891
Number of successful extensions: 3069
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3011
Number of HSP's successfully gapped: 47
Length of query: 1282
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1177
Effective length of database: 3,770,088
Effective search space: 4437393576
Effective search space used: 4437393576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)