RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9553
         (1282 letters)



>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
           (Nicotiana tabacum), UROD-III [TaxId: 4097]}
          Length = 343

 Score = 32.6 bits (73), Expect = 0.26
 Identities = 29/272 (10%), Positives = 73/272 (26%), Gaps = 19/272 (6%)

Query: 473 PAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAP 532
            ++  L      F D    ++L+   +++P             F  D        +    
Sbjct: 30  KSYQLLCEKYPLFRDRSENVDLVVEISLQPWK----------VFRPDGVILFSDILTPLS 79

Query: 533 LLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIG 592
            +    DI       + +    A   +   E+   +           L    +  A  +G
Sbjct: 80  GMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLG 139

Query: 593 QLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWV------YLEA 646
            +     +   ++    +  F K  +    +    + +L+++      ++        +A
Sbjct: 140 FVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQA 199

Query: 647 VFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLE 706
           V +    A +L         +    Q +       P +           LL       ++
Sbjct: 200 VQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLPLTGVD 259

Query: 707 LCQKSLSGYLEKKRMMFPRFFFVS---DPALL 735
           +     +  +   R        +    DP +L
Sbjct: 260 VVSLDWTVDMADGRRRLGPNVAIQGNVDPGVL 291


>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
           CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 133

 Score = 30.7 bits (69), Expect = 0.46
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 256 ITDLDDVRMIMELLK-----RIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDS 310
           + D  D  + M +LK        D +   E+  + + EA   +  + + + +EDLE+  +
Sbjct: 6   LLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKA 65

Query: 311 LRY 313
           LR 
Sbjct: 66  LRI 68


>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 29.1 bits (64), Expect = 1.1
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 713 SGYLEKKRMMFPRFF------FVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQ 766
            GYL K + M  RFF          PA LE            +              +++
Sbjct: 5   VGYLRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKR 64

Query: 767 EYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQM 804
             +K  H+V+          A  +E   +SW   LLQ+
Sbjct: 65  ADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQL 102


>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 29.1 bits (65), Expect = 1.4
 Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 230 LRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEA 289
           L +K+ ++           ++ L +   +   +  +  LL++    E D+    + +E+ 
Sbjct: 15  LAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQI 74

Query: 290 YNVITRY--DLPVDKEDL-EQVDSLRYTWQKLLARA 322
             +          D  ++ ++   +   W +L    
Sbjct: 75  AAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLT 110


>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 28.9 bits (64), Expect = 2.6
 Identities = 7/73 (9%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 410 ELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGL 469
           +L +    +N +  L+K     ++   + +       +++    +  + Q + +   K  
Sbjct: 17  DLDKYDHTINQVDSLHKRLLTEVNEEQASHL----RHSLDNFVAQATDLQFKLKNEIKSA 72

Query: 470 KEWPAFHALKRTI 482
           +        K+  
Sbjct: 73  QRDGIHDTNKQAQ 85


>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and
           RPA-binding domain, C-terminal subdomain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 75

 Score = 26.2 bits (58), Expect = 5.2
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 133 LLSTCTLDIKPALVSFVEKWSPYKFLWENEMI-NRRDVTNVGLVESEHALRRHGELEA 189
           LL  C L+ +   + F+ K +P+   W +  +  +  +        + +L   G  EA
Sbjct: 16  LLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIV-------KRSLEVWGSQEA 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,838,794
Number of extensions: 234651
Number of successful extensions: 665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 11
Length of query: 1282
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1186
Effective length of database: 1,089,516
Effective search space: 1292165976
Effective search space used: 1292165976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)