Query psy9555
Match_columns 138
No_of_seqs 129 out of 816
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:39:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1.4E-29 4.7E-34 253.4 5.3 111 12-138 3005-3118(3245)
2 3t98_A Nuclear pore complex pr 58.5 18 0.00061 22.1 4.3 29 15-43 21-49 (51)
3 3vmx_A Voltage-gated hydrogen 56.3 9.6 0.00033 23.1 2.8 18 16-33 25-42 (48)
4 3a2a_A Voltage-gated hydrogen 47.9 17 0.00057 22.7 2.9 17 18-34 34-50 (58)
5 1zrx_A Stomoxyn; helical pepti 46.1 15 0.00053 21.1 2.4 25 26-50 5-29 (42)
6 2q6q_A Spindle POLE BODY compo 30.6 47 0.0016 21.6 3.1 21 22-42 16-36 (74)
7 4g2k_A General control protein 22.3 47 0.0016 23.8 2.1 33 16-48 28-60 (125)
8 1use_A VAsp, vasodilator-stimu 20.5 1.4E+02 0.0049 17.6 3.7 22 23-44 7-29 (45)
9 1h3o_B Transcription initiatio 19.6 1E+02 0.0034 20.0 3.2 31 36-82 8-38 (76)
10 3t98_B Nucleoporin NUP58/NUP45 19.5 2.1E+02 0.0071 19.1 4.9 37 14-50 3-39 (93)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.95 E-value=1.4e-29 Score=253.38 Aligned_cols=111 Identities=17% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcHHHHHHhhcCcccccccccccccchhhhhcchhHHHHHHhhHcCCCcchhhhc
Q psy9555 12 GALLPMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIVMSQGLKSSLDAMYDARIPEKWQKI 91 (138)
Q Consensus 12 ~~~~pl~~fl~qEi~r~n~Ll~~Ir~sL~~L~~ai~G~~~~~~~~~~~~~~~~~~~ms~~l~~~~~~l~~~~VP~~W~~~ 91 (138)
+..+|+++||.||++|||+|++.||+||.+|++||+|++ +||+++++++++|++|+||..|.+.
T Consensus 3005 ~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i----------------~mS~~le~l~~sl~~~~VP~~W~~~ 3068 (3245)
T 3vkg_A 3005 NIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNI----------------KSTNYLRSLTTSISKGIVPKEWKWY 3068 (3245)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------CCS
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCC----------------cCCHHHHHHHHHHHcCCCchhhhcc
Confidence 357999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccCC-cCHHHHHHHHHHHHHHHHHHHhC--CCCCeEecCCcccccccccC
Q psy9555 92 SWES-ATLGFWYTELLERDIQFRRWYQH--GRPNVFWMTTRVTQNTYSSN 138 (138)
Q Consensus 92 s~~s-~~L~~Wi~dL~~R~~~l~~W~~~--g~p~~~WLsgff~P~~FLta 138 (138)
+||| +||++|+.||++|++|++.|++. |+|.+||||||||||+||||
T Consensus 3069 syps~k~L~~W~~dL~~R~~~l~~W~~~~~~~p~~~WLsgff~Pq~FLTA 3118 (3245)
T 3vkg_A 3069 SVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLGGLLNPEAYITA 3118 (3245)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHC-------CCGGGSSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEecCCCcchHHHHHH
Confidence 9998 79999999999999999999998 58999999999999999997
No 2
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=58.47 E-value=18 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcHHHHH
Q psy9555 15 LPMNIFLRQEIDRIQRVILEVRKTLTDLK 43 (138)
Q Consensus 15 ~pl~~fl~qEi~r~n~Ll~~Ir~sL~~L~ 43 (138)
+-+..+|.+.-+-+..|+..|++++++|+
T Consensus 21 ~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 21 REIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 44667999888999999999999999986
No 3
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=56.26 E-value=9.6 Score=23.10 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy9555 16 PMNIFLRQEIDRIQRVIL 33 (138)
Q Consensus 16 pl~~fl~qEi~r~n~Ll~ 33 (138)
-...-..||++|.|+||+
T Consensus 25 ~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 25 FSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHH
Confidence 344567899999999986
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.86 E-value=17 Score=22.73 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9555 18 NIFLRQEIDRIQRVILE 34 (138)
Q Consensus 18 ~~fl~qEi~r~n~Ll~~ 34 (138)
+..-.||++|.++||+.
T Consensus 34 c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 34 CSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567999999999863
No 5
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=46.09 E-value=15 Score=21.11 Aligned_cols=25 Identities=12% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcHHHHHHhhcCcc
Q psy9555 26 DRIQRVILEVRKTLTDLKLAIDGTI 50 (138)
Q Consensus 26 ~r~n~Ll~~Ir~sL~~L~~ai~G~~ 50 (138)
.+||++++.|+.++.+...+-+...
T Consensus 5 k~fn~~ikkikhtisetahvakd~a 29 (42)
T 1zrx_A 5 KHFNKLVKKVKHTISETAHVAKDTA 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 5899999999999998876655443
No 6
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.55 E-value=47 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHcHHHH
Q psy9555 22 RQEIDRIQRVILEVRKTLTDL 42 (138)
Q Consensus 22 ~qEi~r~n~Ll~~Ir~sL~~L 42 (138)
..||+|.|.+++..|.-|...
T Consensus 16 q~EI~rLnvlvgslR~KLiKY 36 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLEKY 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999887543
No 7
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.27 E-value=47 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcHHHHHHhhcC
Q psy9555 16 PMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDG 48 (138)
Q Consensus 16 pl~~fl~qEi~r~n~Ll~~Ir~sL~~L~~ai~G 48 (138)
+-..-+..|+.|+.+|++.+-..|+.+......
T Consensus 28 ~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~ 60 (125)
T 4g2k_A 28 SKIYHIENEIARIKKLIGNLVSRLRRLANQTAK 60 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999888888776644333
No 8
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.48 E-value=1.4e+02 Score=17.60 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=14.9
Q ss_pred HHHHHHH-HHHHHHHHcHHHHHH
Q psy9555 23 QEIDRIQ-RVILEVRKTLTDLKL 44 (138)
Q Consensus 23 qEi~r~n-~Ll~~Ir~sL~~L~~ 44 (138)
.|++++. .+|..||+-|+.++.
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 578888888876664
No 9
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=19.61 E-value=1e+02 Score=19.98 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHcHHHHHHhhcCcccccccccccccchhhhhcchhHHHHHHhhHcC
Q psy9555 36 RKTLTDLKLAIDGTITGNKFSSLICPSIQSIVMSQGLKSSLDAMYDA 82 (138)
Q Consensus 36 r~sL~~L~~ai~G~~~~~~~~~~~~~~~~~~~ms~~l~~~~~~l~~~ 82 (138)
+..|++|.+-+.|.. .|.++.++++..+.+.
T Consensus 8 k~~L~~Lv~~idp~~----------------~ld~~vee~ll~lADd 38 (76)
T 1h3o_B 8 KKKLQDLVREVDPNE----------------QLDEDVEEMLLQIADD 38 (76)
T ss_dssp HHHHHHHHHHHCSSC----------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC----------------CCCHHHHHHHHHHHHH
Confidence 456788888888877 8888888887766553
No 10
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=19.55 E-value=2.1e+02 Score=19.06 Aligned_cols=37 Identities=8% Similarity=0.203 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHcHHHHHHhhcCcc
Q psy9555 14 LLPMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDGTI 50 (138)
Q Consensus 14 ~~pl~~fl~qEi~r~n~Ll~~Ir~sL~~L~~ai~G~~ 50 (138)
.++-..|+.+=+.+|..-|..-|..++++.+.+.+..
T Consensus 3 ~~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 3 HMAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445567778889999999999999999999998855
Done!