Query psy9555
Match_columns 138
No_of_seqs 129 out of 816
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 22:39:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2elca1 a.46.2.1 (A:1-52) Anth 45.7 8.3 0.0006 21.6 2.8 32 41-88 3-34 (52)
2 d1khda1 a.46.2.1 (A:12-80) Ant 39.3 10 0.00074 22.0 2.6 22 67-88 15-36 (69)
3 d1o17a1 a.46.2.1 (A:1-70) Anth 33.6 16 0.0011 21.1 2.8 21 67-87 16-36 (70)
4 d2tpta1 a.46.2.1 (A:1-70) Thym 28.4 19 0.0014 20.8 2.6 21 67-87 17-37 (70)
5 d1nkta2 a.172.1.1 (A:616-835) 26.2 39 0.0028 23.3 4.4 32 9-40 181-212 (220)
6 d1tf5a2 a.172.1.1 (A:571-780) 25.2 41 0.003 23.0 4.3 33 9-41 171-203 (210)
7 d1brwa1 a.46.2.1 (A:1-70) Pyri 25.1 27 0.002 20.0 2.8 33 67-108 16-48 (70)
8 d1kqfc_ f.21.1.1 (C:) Formate 24.4 18 0.0013 24.8 2.2 33 74-111 177-209 (216)
9 d1uoua1 a.46.2.1 (A:33-100) Th 24.3 26 0.0019 20.2 2.6 21 67-87 17-37 (68)
10 d1zyma1 a.60.10.1 (A:22-144) E 23.5 50 0.0036 20.8 4.2 67 21-89 15-82 (123)
11 d2c0sa1 a.30.7.1 (A:1-57) Hypo 21.6 72 0.0052 18.3 5.1 31 6-36 19-49 (57)
12 d1y74a1 a.194.1.1 (A:17-73) Li 21.2 73 0.0053 18.2 4.6 30 21-50 3-39 (57)
No 1
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=45.68 E-value=8.3 Score=21.59 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHhhcCcccccccccccccchhhhhcchhHHHHHHhhHcCCCcchh
Q psy9555 41 DLKLAIDGTITGNKFSSLICPSIQSIVMSQGLKSSLDAMYDARIPEKW 88 (138)
Q Consensus 41 ~L~~ai~G~~~~~~~~~~~~~~~~~~~ms~~l~~~~~~l~~~~VP~~W 88 (138)
-|++.+.|.- .-.++.+.+++.+.+|.+++.=
T Consensus 3 ~l~kl~~g~~----------------Lt~~ea~~~~~~im~G~~~~~q 34 (52)
T d2elca1 3 AVKKAILGEV----------------LEEEEAYEVMRALMAGEVSPVR 34 (52)
T ss_dssp HHHHHHTTCC----------------CCHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHcCCC----------------CCHHHHHHHHHHHHcCCCCHHH
Confidence 4677788877 7778999999999999998843
No 2
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=39.32 E-value=10 Score=22.05 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=19.2
Q ss_pred hcchhHHHHHHhhHcCCCcchh
Q psy9555 67 VMSQGLKSSLDAMYDARIPEKW 88 (138)
Q Consensus 67 ~ms~~l~~~~~~l~~~~VP~~W 88 (138)
.-.++++.+++.+++|++|+.=
T Consensus 15 Ls~ee~~~~~~~i~~g~~~d~q 36 (69)
T d1khda1 15 MTQEESHQLFAAIVRGELEDSQ 36 (69)
T ss_dssp CCHHHHHHHHHHHTTTCSCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHH
Confidence 6778999999999999998843
No 3
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=33.64 E-value=16 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred hcchhHHHHHHhhHcCCCcch
Q psy9555 67 VMSQGLKSSLDAMYDARIPEK 87 (138)
Q Consensus 67 ~ms~~l~~~~~~l~~~~VP~~ 87 (138)
.-.++.+.+++.+.+|++|+.
T Consensus 16 Ls~~e~~~~~~~i~~g~~s~~ 36 (70)
T d1o17a1 16 LEINEAEELAKAIIRGEVPEI 36 (70)
T ss_dssp CCHHHHHHHHHHHHTTCSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCHH
Confidence 778899999999999999884
No 4
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=28.45 E-value=19 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.8
Q ss_pred hcchhHHHHHHhhHcCCCcch
Q psy9555 67 VMSQGLKSSLDAMYDARIPEK 87 (138)
Q Consensus 67 ~ms~~l~~~~~~l~~~~VP~~ 87 (138)
.-.++++.+.+++.+|++++.
T Consensus 17 Ls~~E~~~~~~~i~~g~~~d~ 37 (70)
T d2tpta1 17 LSDEEIRFFINGIRDNTISEG 37 (70)
T ss_dssp CCHHHHHHHHHHHHHTCSCHH
T ss_pred cCHHHHHHHHHHHHcCCchHH
Confidence 677899999999999999884
No 5
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.23 E-value=39 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=28.0
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHcHH
Q psy9555 9 QRMGALLPMNIFLRQEIDRIQRVILEVRKTLT 40 (138)
Q Consensus 9 ~~~~~~~pl~~fl~qEi~r~n~Ll~~Ir~sL~ 40 (138)
+.||.+||+..+=..-...|+.++..||.+..
T Consensus 181 R~ygQkDPl~EYK~Eaf~lF~~m~~~i~~~vi 212 (220)
T d1nkta2 181 RAMAQRDPLVEYQREGYDMFMAMLDGMKEESV 212 (220)
T ss_dssp GCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998889999999999998764
No 6
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=25.16 E-value=41 Score=23.02 Aligned_cols=33 Identities=6% Similarity=0.199 Sum_probs=27.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHcHHH
Q psy9555 9 QRMGALLPMNIFLRQEIDRIQRVILEVRKTLTD 41 (138)
Q Consensus 9 ~~~~~~~pl~~fl~qEi~r~n~Ll~~Ir~sL~~ 41 (138)
+.+|.+||+..+=..-...|+.++..|+.+...
T Consensus 171 R~ygQkDPl~EYk~Eaf~lF~~m~~~i~~~iv~ 203 (210)
T d1tf5a2 171 RAYAQTNPLREYQMEGFAMFEHMIESIEDEVAK 203 (210)
T ss_dssp TSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999888889999999999987643
No 7
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=25.14 E-value=27 Score=20.03 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=24.4
Q ss_pred hcchhHHHHHHhhHcCCCcchhhhcccCCcCHHHHHHHHHHH
Q psy9555 67 VMSQGLKSSLDAMYDARIPEKWQKISWESATLGFWYTELLER 108 (138)
Q Consensus 67 ~ms~~l~~~~~~l~~~~VP~~W~~~s~~s~~L~~Wi~dL~~R 108 (138)
.-.++++.+.+.+.+|++++.= +++|+.-+..|
T Consensus 16 Ls~~E~~~~~~~i~~g~~s~~q---------i~afL~al~~k 48 (70)
T d1brwa1 16 LTKEEIEWIVRGYTNGDIPDYQ---------MSALAMAIYFR 48 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHH---------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHH---------HHHHHHHHHHc
Confidence 6778999999999999988742 35555555443
No 8
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=24.40 E-value=18 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.619 Sum_probs=25.6
Q ss_pred HHHHhhHcCCCcchhhhcccCCcCHHHHHHHHHHHHHH
Q psy9555 74 SSLDAMYDARIPEKWQKISWESATLGFWYTELLERDIQ 111 (138)
Q Consensus 74 ~~~~~l~~~~VP~~W~~~s~~s~~L~~Wi~dL~~R~~~ 111 (138)
...++|..|+||..|.+.-. ..|++++.+|-.+
T Consensus 177 ~~l~~M~tG~v~~~~~~~~h-----~~w~~~~~~~~~~ 209 (216)
T d1kqfc_ 177 GSIKGMIEGKVSRRWAKKHH-----PRWYREIEKAEAK 209 (216)
T ss_dssp THHHHHHTCEEEHHHHHHHC-----HHHHHHHHHHHHH
T ss_pred cccchhheeeccHHHHHHHH-----HHHHHHHHhccCC
Confidence 45678999999999987432 5799999887653
No 9
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.32 E-value=26 Score=20.15 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=18.8
Q ss_pred hcchhHHHHHHhhHcCCCcch
Q psy9555 67 VMSQGLKSSLDAMYDARIPEK 87 (138)
Q Consensus 67 ~ms~~l~~~~~~l~~~~VP~~ 87 (138)
.-.++++.+.+++..|++++.
T Consensus 17 Ls~~E~~~~~~~i~~g~~s~~ 37 (68)
T d1uoua1 17 LSEADIRGFVAAVVNGSAQGA 37 (68)
T ss_dssp CCHHHHHHHHHHHHHTCSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCHH
Confidence 778899999999999999884
No 10
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=23.52 E-value=50 Score=20.84 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHcHHHHHHhhcCcccccccccccccchhhhhcchhHHHH-HHhhHcCCCcchhh
Q psy9555 21 LRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIVMSQGLKSS-LDAMYDARIPEKWQ 89 (138)
Q Consensus 21 l~qEi~r~n~Ll~~Ir~sL~~L~~ai~G~~~~~~~~~~~~~~~~~~~ms~~l~~~-~~~l~~~~VP~~W~ 89 (138)
+..|+.||.+-+...+..|+.+.+-..+... .....|.++-.--.-.+.+.+- ...+..+.+...|.
T Consensus 15 v~~E~~rl~~A~~~~~~~L~~l~~~~~~~~~--~e~a~If~ah~~iL~D~~l~~~v~~~I~~~~~~Ae~A 82 (123)
T d1zyma1 15 VDQEVERFLSGRAKASAQLETIKTKAGETFG--EEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAA 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHcCchHHHHHHHHHHccCcchHHH
Confidence 4579999999999999999999987665441 1112233333333333444333 33444666666663
No 11
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=21.58 E-value=72 Score=18.31 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy9555 6 EALQRMGALLPMNIFLRQEIDRIQRVILEVR 36 (138)
Q Consensus 6 ~~~~~~~~~~pl~~fl~qEi~r~n~Ll~~Ir 36 (138)
..+.++|...+-..-+.||+++.-..+-.++
T Consensus 19 ~Lv~~YGf~h~kvl~~SQELD~LIN~~m~~k 49 (57)
T d2c0sa1 19 YLVEKYGFTHHKVISFSQELDRLLNLLIELK 49 (57)
T ss_dssp HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999998899999998765554444
No 12
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.16 E-value=73 Score=18.23 Aligned_cols=30 Identities=13% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHc-------HHHHHHhhcCcc
Q psy9555 21 LRQEIDRIQRVILEVRKT-------LTDLKLAIDGTI 50 (138)
Q Consensus 21 l~qEi~r~n~Ll~~Ir~s-------L~~L~~ai~G~~ 50 (138)
|.+.+.|.-.||..+.++ |+.|++++....
T Consensus 3 L~rDv~RaieLle~LQ~~gevp~~KL~aLqkVLqSdF 39 (57)
T d1y74a1 3 LERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRF 39 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSHH
T ss_pred chHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 445666777777766654 555666655433
Done!