RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9555
(138 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 114 bits (286), Expect = 1e-30
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 11 MGALLPMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIVMSQ 70
P+ +EI +++ ++ L +L I G I +
Sbjct: 3004 QNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGN----------------IKSTN 3047
Query: 71 GLKSSLDAMYDARIPEKWQKISWES-ATLGFWYTELLERDIQFRRWYQHGR--PNVFWMT 127
L+S ++ +P++W+ S +L W ++ +R Q + W+
Sbjct: 3048 YLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLG 3107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.024
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 19/38 (50%)
Query: 22 RQEIDRIQRVILEVRKTLTDLK---------LAIDGTI 50
+Q + ++Q LK LAI T+
Sbjct: 19 KQALKKLQ----------ASLKLYADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.080
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 52/139 (37%)
Query: 5 REALQRMGALLPMNIF---LRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICP 61
RE L ++I +R + + D K +++I
Sbjct: 320 REVLT--TNPRRLSIIAESIRDGLATWDNW----KHVNCD------------KLTTIIES 361
Query: 62 SIQSIVMSQGLKSS-LDAMY--------DARIPEKWQKISWESATLGFWYTE-------- 104
S+ L+ + M+ A IP + W ++
Sbjct: 362 SLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKL 411
Query: 105 ----LLERDIQFRRWYQHG 119
L+E+ +
Sbjct: 412 HKYSLVEKQPKESTISIPS 430
Score = 29.8 bits (66), Expect = 0.34
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 61/179 (34%)
Query: 3 SVREALQRMGALL-PMNIFLRQEIDRIQRVILEVR--------------KT-LT------ 40
R+ L + N+ Q ++++ +LE+R KT +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 41 -DLKLAIDGTI----TGNKFSSLICPSIQSIV-MSQGLKSSLDAMYDARIPEKWQKISWE 94
++ +D I N C S ++++ M Q L +D + +R + I
Sbjct: 174 YKVQCKMDFKIFWLNLKN------CNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLR 226
Query: 95 SATLGFWYTELLERDIQFRRWYQHG----RPNVFW---------------MTTRVTQNT 134
+ EL R + + Y++ NV +TTR Q T
Sbjct: 227 ---IHSIQAEL--RRLLKSKPYENCLLVLL-NV-QNAKAWNAFNLSCKILLTTRFKQVT 278
Score = 26.7 bits (58), Expect = 3.1
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 19/114 (16%)
Query: 15 LPMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIVMSQGLKS 74
+P +I ++EID I+ + ++ + + +V + ++
Sbjct: 41 MPKSILSKEEIDH----IIMSKDAVSGTLRLFW----------TLLSKQEEMV-QKFVEE 85
Query: 75 SLDAMYDARIPEKWQKISWESATLGFWYTELLER---DIQFRRWYQHGRPNVFW 125
L Y + + + + + Y E +R D Q Y R +
Sbjct: 86 VLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.083
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 10 RMGALLPMNIFLRQEIDRIQRVILEVRKTLTDLKLAI--DGTITGNKFSSLICPSIQSIV 67
M A+ P + + +Q V+ V K T + I N + Q V
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKR-TGWLVEIVNY-----N------VENQQ-YV 1854
Query: 68 MSQGLKSSLDAMYDARIPE--KWQKI 91
+ G +LD + + K QKI
Sbjct: 1855 AA-GDLRALDTV--TNVLNFIKLQKI 1877
Score = 27.7 bits (61), Expect = 1.7
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 14/122 (11%)
Query: 21 LRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLI--CPSIQSIVMS----QGLKS 74
L QE D E+ K ++ S+L + +++ QG
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 75 S----LDAMYDARIPEKWQKISWESATLGFWYTELLERDIQFRRWYQHGRPNVFWMTTRV 130
L +Y I + + TL +EL+ + + + G + W+
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 131 TQ 132
Sbjct: 224 NT 225
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.2 bits (65), Expect = 0.37
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 85 PEKWQKISWESATLGFWYTELLERDIQFRRWYQHGRPNVFWM 126
P+ W ++ S L +++ F + Y + +
Sbjct: 72 PQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVV 113
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr
B556(FDN) subunit; oxidoreductase, selenium,
selenocysteine, seCys, molybdenum; HET: MGD HEM CDL;
1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Length = 217
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 66 IVMSQGLKSSLDAMYDARIPEKWQKISWESATLGFWYTELLERDIQ 111
+ M+ +K S+ M + ++ +W K WY E+ + + +
Sbjct: 170 MYMAFWVKGSIKGMIEGKVSRRWAKKHH-----PRWYREIEKAEAK 210
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose
isomerization, hydride shift; 1.60A {Escherichia coli}
SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Length = 426
Score = 27.2 bits (60), Expect = 2.2
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 72 LKSSLDAMYDARIPEKWQKISWES 95
L ++LD + ++ + ES
Sbjct: 211 LLAALDEVISEKLNPAHHIDAVES 234
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 26.4 bits (58), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 79 MYDARIPEKWQKISWESATLGFWYTELLE-RDIQFRRWYQHGRPNVFWMTT 128
Y A +KWQ+ISWE A + RD F + G W++T
Sbjct: 112 EYRAPGSDKWQRISWEEA-FSRIAKLMKADRDANFIEKNEQGVTVNRWLST 161
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 26.0 bits (58), Expect = 4.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 17 MNIFLRQEIDRIQRVILEVRKTLTDL 42
+ +F++ + I +L++ KTL +
Sbjct: 123 LKLFMKNSLSIISTHLLQLIKTLVER 148
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding,
transcriptional regulatory protein, archaeal; HET: DNA;
2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
PDB: 1ri7_A* 2zny_A* 2znz_A*
Length = 171
Score = 25.7 bits (57), Expect = 4.7
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 1 MCSVREALQRMGALLPMNIFLRQEIDRIQRVILEV-----RKTLTDL 42
M S L+P +R +D I + I+++ + L ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRVPLDEIDKKIIKILQNDGKAPLREI 47
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion,
viral entry, envelope protein, signal, transmembrane,
virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
PDB: 1zv7_A
Length = 48
Score = 24.2 bits (52), Expect = 5.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 21 LRQEIDRIQRVILEVRKTLTDLK 43
+++EIDR+ V + ++L DL+
Sbjct: 15 IQKEIDRLNEVAKNLNESLIDLQ 37
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 25.6 bits (57), Expect = 6.4
Identities = 1/26 (3%), Positives = 11/26 (42%)
Query: 17 MNIFLRQEIDRIQRVILEVRKTLTDL 42
+ ++ + + + +++ L +
Sbjct: 117 LKLWCKDTVSELLTANRQLQSALVET 142
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 25.6 bits (57), Expect = 7.3
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 17 MNIFLRQEIDRIQRVILEVRKTLTDL 42
+ ++LR ID + ++L +R+ L
Sbjct: 118 LRLYLRGAIDELLALLLALRRVLVRE 143
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 25.3 bits (55), Expect = 9.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 79 MYDARIPEKWQKISWESA 96
+Y A ++W++ SW+
Sbjct: 74 LYRAPGSDQWEEKSWDWM 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.413
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,134,983
Number of extensions: 114223
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 23
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)