RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9555
(138 letters)
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic
flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Length = 399
Score = 25.9 bits (56), Expect = 2.3
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 29 QRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSI 63
RV L R++ + + DG +T S P++
Sbjct: 6 SRVELFKRQS-SKVPFEKDGKVTERVVHSFRLPAL 39
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 25.5 bits (54), Expect = 2.3
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 1/118 (0%)
Query: 5 REALQRMGALLPMNIFLRQEIDRIQRVILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQ 64
R+ + G L+ N+ +I R + ++ + L + S PS +
Sbjct: 16 RKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVK-PLGLTVMRDVTISKSEYAPSEK 74
Query: 65 SIVMSQGLKSSLDAMYDARIPEKWQKISWESATLGFWYTELLERDIQFRRWYQHGRPN 122
I Q + + +PE + + + +L P
Sbjct: 75 MITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPL 132
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840
{Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 24.0 bits (52), Expect = 2.8
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 32 ILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIV---MSQGLKSSLDA 78
+LE K DL L G + N ++ + + + S L +++
Sbjct: 22 VLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNSLINAVKT 71
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 75
Score = 23.9 bits (52), Expect = 3.9
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 32 ILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIV---MSQGLKSSLD 77
+LE +L L I G I N + + S + ++ +Q L SSL+
Sbjct: 22 VLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQALMSSLE 70
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 23.9 bits (52), Expect = 4.0
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 32 ILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIV---MSQGLKSSLD 77
+LE K TDL L + G + N ++ I P+ + + ++ L+SS++
Sbjct: 22 VLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSIN 70
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176
{Shewanella oneidensis [TaxId: 70863]}
Length = 65
Score = 23.5 bits (51), Expect = 4.2
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 32 ILEVRKTLTDLKLAIDGTITGNKFSSLICPSIQSIV---MSQGLKSSLDA 78
+LE K TDL L G + + + V ++ L S+ +
Sbjct: 15 VLEKHKAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKALAQSVKS 64
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha
subunit {Escherichia coli [TaxId: 562]}
Length = 817
Score = 24.8 bits (53), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 79 MYDARIPEKWQKISWESA 96
Y A +KWQ+ISWE A
Sbjct: 79 EYRAPGSDKWQRISWEEA 96
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma)
subunit {Escherichia coli [TaxId: 562]}
Length = 216
Score = 24.3 bits (52), Expect = 5.3
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 66 IVMSQGLKSSLDAMYDARIPEKWQKISWESATLGFWYTELLERDIQ 111
+ M+ +K S+ M + ++ +W K WY E+ + + +
Sbjct: 169 MYMAFWVKGSIKGMIEGKVSRRWAKKHHP-----RWYREIEKAEAK 209
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
dehydrogenase, large subunit {Desulfovibrio gigas
[TaxId: 879]}
Length = 812
Score = 24.8 bits (53), Expect = 5.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 79 MYDARIPEKWQKISWESA 96
+Y A ++W++ SW+
Sbjct: 74 LYRAPGSDQWEEKSWDWM 91
>d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Length = 170
Score = 24.0 bits (52), Expect = 6.3
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 71 GLKSSLDAMYDARIPEKWQKISWESATLGFWYTEL--LERDIQFRRWYQHGRP 121
G+K D D + + + A G E WY+HG+P
Sbjct: 1 GIKIYDDTWLDLKYRDPFPAARNPIAAGGRKVKSDDGTEMFQYVALWYEHGQP 53
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 24.4 bits (51), Expect = 6.7
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 83 RIPEKWQKISWESA 96
++W +W+ A
Sbjct: 123 YAADEWVDTTWDHA 136
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 24.5 bits (52), Expect = 6.8
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 15 LPMNIFLRQEIDRIQRVILEVRKTLTDLK 43
+ ++ +D I ++ +++ LK
Sbjct: 416 IARRVYTNDHMDYIADALIGLKEKFATLK 444
>d1pmhx_ b.18.1.18 (X:) Beta-1,4-mannanase ManA
{Caldicellulosiruptor saccharolyticus [TaxId: 44001]}
Length = 183
Score = 24.1 bits (52), Expect = 6.8
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 62 SIQSIVMSQGLKSS-------LDAMYDARIPEKWQKISWESATLGFWYTELLERDIQF 112
I+ + +SQ L+ LD ++ W+ LG W ++E F
Sbjct: 27 CIKKVSVSQDLQRPGNKYALRLDVEFNP-------NNGWDQGDLGTWIGGVVEGQFDF 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.413
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,398
Number of extensions: 22031
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)