Query psy9556
Match_columns 62
No_of_seqs 101 out of 714
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:39:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.6 4.9E-17 1.7E-21 131.2 3.6 62 1-62 3179-3243(3245)
2 2h7a_A Hypothetical protein YC 45.0 18 0.00063 20.9 2.6 13 20-32 14-26 (110)
3 2bn8_A CEDA, cell division act 28.3 21 0.00072 19.6 0.9 14 46-59 40-55 (87)
4 1yua_A Topoisomerase I; gene-r 18.0 80 0.0027 18.5 2.1 21 36-56 13-34 (122)
5 3t30_B Nucleoplasmin-2; beta-b 16.8 70 0.0024 18.3 1.7 18 33-50 3-20 (110)
6 3fci_A UDG, uracil-DNA glycosy 15.6 29 0.00099 22.3 -0.2 18 41-58 105-122 (223)
7 2j8x_A Uracil-DNA glycosylase; 15.1 31 0.001 22.2 -0.2 19 41-59 107-125 (231)
8 2aw2_A B and T lymphocyte atte 15.1 55 0.0019 19.2 0.9 18 3-23 74-91 (120)
9 3mb2_A 4-oxalocrotonate tautom 14.8 71 0.0024 15.8 1.2 13 44-56 45-57 (72)
10 3tr7_A UDG, uracil-DNA glycosy 14.2 31 0.001 22.3 -0.4 20 40-59 109-128 (232)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.64 E-value=4.9e-17 Score=131.18 Aligned_cols=62 Identities=11% Similarity=0.277 Sum_probs=48.5
Q ss_pred CceEEEEeeecCCCC---CCCeEEeeceeeccCCCcceEEEEEecCCCCCchheeeheeeccccC
Q psy9556 1 MPVIYIYAINTTAGK---DPKLYECPIYRKPQRTDLKYVGSIDFETDNNPRHWTLRGVALLCDIK 62 (62)
Q Consensus 1 ~Pvi~~~p~~~~~~~---~~~~Y~cPvY~t~~R~~~~~v~~~~L~t~~~p~~Wi~rGvAll~~~~ 62 (62)
||+||++|+...... ..+.|+||||+|+.|+|.-|.+.+.++++++|+|||+|||||||+++
T Consensus 3179 lPvi~l~~~~~~~~~~~~~~~~y~cPvYkt~~R~~~l~~~~l~~~t~~~~~~Wi~rGVALl~~~~ 3243 (3245)
T 3vkg_A 3179 ISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRSVSISSWKS 3243 (3245)
T ss_dssp CCCEEECCCC---CCTTSGGGEEEEEEESSTTCCCEEEEEEEEBCTTSCHHHHHTTTCEEESCCC
T ss_pred CCceeEEEeecccccccCCCCeEEcceEecCCCCCEEEEEEEECCCCCCHhHHHHHHHHHHcCCc
Confidence 799999997664332 35689999999999997545555555568999999999999999875
No 2
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=44.99 E-value=18 Score=20.94 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.0
Q ss_pred EEeeceeeccCCC
Q psy9556 20 YECPIYRKPQRTD 32 (62)
Q Consensus 20 Y~cPvY~t~~R~~ 32 (62)
--|=||+++.|.|
T Consensus 14 mlC~IYkS~KK~~ 26 (110)
T 2h7a_A 14 MFCVIYRSSKRDQ 26 (110)
T ss_dssp CCEEEEEETTSSS
T ss_pred EEEEEEecCCCCc
Confidence 4688999888764
No 3
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=28.27 E-value=21 Score=19.56 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=9.2
Q ss_pred CCchheeeh--eeecc
Q psy9556 46 NPRHWTLRG--VALLC 59 (62)
Q Consensus 46 ~p~~Wi~rG--vAll~ 59 (62)
--+-|++|| ||.++
T Consensus 40 frdvw~lrgkyvafvl 55 (87)
T 2bn8_A 40 FRDVWMLRGKYVAFVL 55 (87)
T ss_dssp CTTEEEETTEEEEBCC
T ss_pred chhheeeccceEEEEE
Confidence 346699998 45443
No 4
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=18.02 E-value=80 Score=18.49 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.5
Q ss_pred EEEEEecCCCCCchheee-hee
Q psy9556 36 VGSIDFETDNNPRHWTLR-GVA 56 (62)
Q Consensus 36 v~~~~L~t~~~p~~Wi~r-GvA 56 (62)
|-.=+|++.+..+|.|+| |.|
T Consensus 13 v~~PeL~C~k~d~~fVLRDGAs 34 (122)
T 1yua_A 13 VPLPELPCEKSDAYFVLRDGAA 34 (122)
T ss_dssp EEEEEEECSSSSCEEEEECCSS
T ss_pred CCCCcccccccCCEEEeeCCch
Confidence 444567788888899999 665
No 5
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0
Probab=16.78 E-value=70 Score=18.26 Aligned_cols=18 Identities=0% Similarity=0.091 Sum_probs=11.3
Q ss_pred cceEEEEEecCCCCCchh
Q psy9556 33 LKYVGSIDFETDNNPRHW 50 (62)
Q Consensus 33 ~~~v~~~~L~t~~~p~~W 50 (62)
.+|+|.+.|..++...+|
T Consensus 3 ~~yl~GceL~~~k~~~~f 20 (110)
T 3t30_B 3 TTVLWGCELSQERRTWTF 20 (110)
T ss_dssp CEEEEEEEECSTTCEEEE
T ss_pred ceEEEEEEEcCCCcceEE
Confidence 367888888765443334
No 6
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=15.61 E-value=29 Score=22.27 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=13.1
Q ss_pred ecCCCCCchheeeheeec
Q psy9556 41 FETDNNPRHWTLRGVALL 58 (62)
Q Consensus 41 L~t~~~p~~Wi~rGvAll 58 (62)
.|...+-+.|..+||-||
T Consensus 105 ~p~~G~L~~WA~QGVLLL 122 (223)
T 3fci_A 105 HPGHGDLSGWAKQGVLLL 122 (223)
T ss_dssp CCSSCCTHHHHTTTEEEE
T ss_pred CCCCccchhHHhCCEEEE
Confidence 344556678999999766
No 7
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=15.07 E-value=31 Score=22.22 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=13.9
Q ss_pred ecCCCCCchheeeheeecc
Q psy9556 41 FETDNNPRHWTLRGVALLC 59 (62)
Q Consensus 41 L~t~~~p~~Wi~rGvAll~ 59 (62)
.|....-+.|..+||-||-
T Consensus 107 ~p~~G~L~~WA~QGVLLLN 125 (231)
T 2j8x_A 107 PPDHGCLDAWASQGVLLLN 125 (231)
T ss_dssp CCSSCCCHHHHTTTEEEEE
T ss_pred CCCCCCchhHHhcCcEeee
Confidence 3455566789999998763
No 8
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=15.05 E-value=55 Score=19.19 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=9.7
Q ss_pred eEEEEeeecCCCCCCCeEEee
Q psy9556 3 VIYIYAINTTAGKDPKLYECP 23 (62)
Q Consensus 3 vi~~~p~~~~~~~~~~~Y~cP 23 (62)
|+||.|+.. .+.+.|.|-
T Consensus 74 vLhf~~V~~---sDsGsYRCs 91 (120)
T 2aw2_A 74 ILHFEPVLP---NDNGSYRCS 91 (120)
T ss_dssp EEEESSCCG---GGCEEEEEE
T ss_pred EEEEeeeeE---cCCcceEEE
Confidence 455555443 344677774
No 9
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=14.75 E-value=71 Score=15.84 Aligned_cols=13 Identities=38% Similarity=1.058 Sum_probs=8.9
Q ss_pred CCCCchheeehee
Q psy9556 44 DNNPRHWTLRGVA 56 (62)
Q Consensus 44 ~~~p~~Wi~rGvA 56 (62)
+.++++|...|..
T Consensus 45 e~~~~~w~~gG~~ 57 (72)
T 3mb2_A 45 EVPPTHWTVGGIS 57 (72)
T ss_dssp EECGGGEEETTEE
T ss_pred EcCHHHeeECCEE
Confidence 4456778888764
No 10
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=14.24 E-value=31 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=14.7
Q ss_pred EecCCCCCchheeeheeecc
Q psy9556 40 DFETDNNPRHWTLRGVALLC 59 (62)
Q Consensus 40 ~L~t~~~p~~Wi~rGvAll~ 59 (62)
..|...+-..|..+||-||-
T Consensus 109 ~~p~~G~L~~WA~QGVLLLN 128 (232)
T 3tr7_A 109 SIPSHGFLEKWAKQGVLLLN 128 (232)
T ss_dssp CCCSSCCCHHHHHHTEEEEE
T ss_pred CCCCCCCcHhHHhCCEEeee
Confidence 34555667789999998763
Done!