RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9556
         (62 letters)



>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score = 81.1 bits (200), Expect = 3e-20
 Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 1    MPVIYIYAINTTAG---KDPKLYECPIYRKPQRTDLKYVGSIDFETDNNPRHWTLRGVAL 57
            + +  +   +               P+Y    R++L +   + ++   + ++W  R V++
Sbjct: 3179 ISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRSVSI 3238

Query: 58   LC 59
              
Sbjct: 3239 SS 3240


>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint
           center for structural genomics, J protein structure
           initiative, PSI; HET: NAD EPE; 2.12A {Shewanella
           denitrificans}
          Length = 375

 Score = 25.8 bits (57), Expect = 0.89
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 2   PVIYIYAINTTAG 14
           P ++   I T +G
Sbjct: 150 PAVHHIGIPTVSG 162


>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine
           biosynthesi binding, nucleotide-binding, transferase;
           HET: ADP NLG; 2.06A {Streptococcus mutans}
          Length = 279

 Score = 25.2 bits (56), Expect = 1.4
 Identities = 3/27 (11%), Positives = 6/27 (22%), Gaps = 3/27 (11%)

Query: 14  GKDPKLYECPIYRKPQRTDLKYVGSID 40
                +          +    YVG + 
Sbjct: 135 SDIKHVVAA---DYLDKDTYGYVGDVT 158


>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
           regulation, transfera cyanobacteria, transcription; HET:
           NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
          Length = 321

 Score = 24.9 bits (55), Expect = 2.0
 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 14  GKDPKLYECPIYRKPQRTDLKYVGSID 40
           G D +L      R   +  + +VG ++
Sbjct: 150 GTDGRLVLA---RPHDQEGIGFVGEVN 173


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 971,996
Number of extensions: 40188
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)