RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9556
         (62 letters)



>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
          (RpiA), lid domain {Haemophilus influenzae [TaxId:
          727]}
          Length = 72

 Score = 22.7 bits (49), Expect = 2.7
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 1  MPV-IYIYAINTTAGKDPKLYECPIYRKPQRTDLK-YVGSIDFETDNNPR 48
          +PV +   A +    K   L   P YR+   TD    +  +   +  NP 
Sbjct: 6  LPVEVIPMARSQVGRKLAALGGSPEYREGVVTDNGNVILDVHNFSILNPV 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 245,993
Number of extensions: 8372
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)