BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9560
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE 167
E+ DL ++ R+ ++ +Y+++ ++ EI +L +++ DLRGKF RP L++V
Sbjct: 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISA 121
Query: 168 NKF--AKLQKKAAE-FNFRSQLKAVKKREFSMED 198
+ A L +A E + R+ LK VKK + E+
Sbjct: 122 DAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN 155
>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|E Chain E, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|B Chain B, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|E Chain E, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 106
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 102 DDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150
D + ED++ + +E WQ IYNLEA K++L + + +EI L ++ND
Sbjct: 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88
>pdb|1J1D|C Chain C, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|F Chain F, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 133
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 96 GEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155
+P + + E+ DL ++ R+ ++ +Y+++ ++ EI +L +++ DLRGKF
Sbjct: 50 AQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109
Query: 156 VRPILKKV 163
RP L++V
Sbjct: 110 KRPTLRRV 117
>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
Length = 107
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVN 149
V+ ER +P + D + ED++ D +E W +Y L+ KY+ +I K +EI L +++
Sbjct: 29 VLAERR-KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87
>pdb|1YTZ|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
Length = 182
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE 167
E+ +L ++ +I +++ +Y+ + ++ + E+ +L +++ DLRGKF RP L++V
Sbjct: 59 ELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSA 118
Query: 168 NKFAKL---QKKAAEFNFRSQLKAVKK 191
+ + K + R+ LK VKK
Sbjct: 119 DAMLRALLGSKHKVNMDLRANLKQVKK 145
>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 90
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVN 149
V+ ER +P + D + ED++ D +E W +Y L+ KY+ +I K +EI L +++
Sbjct: 26 VLAER-RKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 84
>pdb|1YV0|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
Length = 137
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 37/56 (66%)
Query: 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKV 163
E+ +L ++ +I +++ +Y+ + ++ + E+ +L +++ DLRGKF RP L++V
Sbjct: 59 ELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRV 114
>pdb|2W49|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 141
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKV 163
E+ +L ++ +I +++ +Y+ + ++ E+ +L +++ DLRGKF RP L++V
Sbjct: 57 ELQELSKKLHAKIDSVDEERYDTEVKLQKTIKELEDLSQKLFDLRGKFKRPPLRRV 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,159,597
Number of Sequences: 62578
Number of extensions: 150923
Number of successful extensions: 343
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 13
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)