Query psy9560
Match_columns 503
No_of_seqs 191 out of 328
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:46:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1e_C Troponin I, TNI; THIN f 100.0 2E-64 6.8E-69 465.7 14.9 165 51-219 6-173 (180)
2 1ytz_I Troponin I; muscle, THI 100.0 4.7E-63 1.6E-67 457.2 11.3 163 52-219 5-172 (182)
3 1j1d_C Troponin I, TNI; THIN f 100.0 1.6E-48 5.4E-53 345.9 15.9 122 51-173 6-128 (133)
4 1ytz_T Troponin T; muscle, THI 100.0 2.4E-30 8.2E-35 222.4 11.0 90 68-160 8-97 (107)
5 1j1d_B Troponin T, TNT; THIN f 100.0 2.6E-30 8.7E-35 222.0 4.0 91 68-160 5-97 (106)
6 1a2x_B Troponin I; muscle cont 99.2 2.6E-12 9E-17 97.3 -0.4 43 52-94 5-47 (47)
7 2fxo_A Myosin heavy chain, car 90.5 7.8 0.00027 33.4 18.1 50 106-155 78-127 (129)
8 3lay_A Zinc resistance-associa 85.5 7.9 0.00027 35.6 11.2 78 54-137 66-143 (175)
9 1l8d_A DNA double-strand break 84.0 13 0.00043 30.4 10.8 60 92-153 47-106 (112)
10 4etp_A Kinesin-like protein KA 81.0 2.5 8.5E-05 42.6 6.5 56 107-162 13-73 (403)
11 2f7t_A MOS1 transposase; RNAse 78.9 1.7 5.8E-05 38.8 4.1 59 283-341 165-224 (227)
12 3f2k_A Histone-lysine N-methyl 77.9 2.8 9.5E-05 37.9 5.2 57 285-341 167-223 (226)
13 3qh9_A Liprin-beta-2; coiled-c 76.5 1.4 4.9E-05 36.9 2.6 34 114-147 29-62 (81)
14 3bas_A Myosin heavy chain, str 76.0 8.7 0.0003 31.4 7.2 40 108-147 18-57 (89)
15 3u06_A Protein claret segregat 75.0 4.8 0.00016 40.9 6.5 49 107-155 13-61 (412)
16 1hjb_A Ccaat/enhancer binding 74.8 5.1 0.00018 33.4 5.6 50 109-158 34-83 (87)
17 3hot_A Transposable element ma 74.3 4.2 0.00014 37.6 5.5 68 274-341 273-342 (345)
18 3nmd_A CGMP dependent protein 73.9 12 0.00041 30.7 7.4 54 100-153 14-68 (72)
19 3efg_A Protein SLYX homolog; x 73.3 6.2 0.00021 32.1 5.6 53 104-156 7-59 (78)
20 3oja_B Anopheles plasmodium-re 67.3 1.1E+02 0.0036 30.7 15.1 29 136-164 562-591 (597)
21 1f5n_A Interferon-induced guan 66.2 65 0.0022 34.2 12.9 13 141-153 569-581 (592)
22 1ci6_A Transcription factor AT 65.4 14 0.00047 28.7 5.8 42 109-150 21-62 (63)
23 3o0z_A RHO-associated protein 64.2 50 0.0017 30.7 10.2 49 106-154 43-105 (168)
24 2fxo_A Myosin heavy chain, car 64.0 16 0.00054 31.5 6.5 46 108-153 17-62 (129)
25 1nkp_A C-MYC, MYC proto-oncoge 63.9 58 0.002 26.5 10.4 61 90-153 27-87 (88)
26 1lwu_C Fibrinogen gamma chain; 63.7 9.8 0.00034 38.0 5.9 54 107-160 8-61 (323)
27 1m1j_C Fibrinogen gamma chain; 63.3 1.3E+02 0.0045 30.9 14.1 54 110-163 83-143 (409)
28 2dfs_A Myosin-5A; myosin-V, in 58.9 25 0.00086 39.8 8.7 25 129-153 1020-1044(1080)
29 1q08_A Zn(II)-responsive regul 58.5 32 0.0011 27.0 7.0 51 103-153 16-74 (99)
30 3hnw_A Uncharacterized protein 58.1 22 0.00074 31.5 6.5 44 110-153 74-124 (138)
31 2q6q_A Spindle POLE BODY compo 57.9 3 0.0001 34.3 0.9 39 128-174 6-44 (74)
32 1t2k_D Cyclic-AMP-dependent tr 57.5 22 0.00076 27.0 5.6 39 110-148 21-59 (61)
33 1jnm_A Proto-oncogene C-JUN; B 57.3 9.5 0.00033 29.2 3.6 38 110-147 21-58 (62)
34 3oja_A Leucine-rich immune mol 55.6 1E+02 0.0034 30.4 11.4 42 111-152 435-476 (487)
35 1lq7_A Alpha3W; three helix bu 54.7 20 0.00069 28.6 5.1 59 83-143 6-66 (67)
36 3s9g_A Protein hexim1; cyclin 53.8 26 0.0009 30.5 6.0 53 100-152 26-78 (104)
37 3na7_A HP0958; flagellar bioge 51.9 23 0.00078 33.1 5.9 50 106-155 34-83 (256)
38 4dnd_A Syntaxin-10, SYN10; str 51.2 50 0.0017 28.9 7.6 60 72-135 32-91 (130)
39 2wt7_A Proto-oncogene protein 51.2 80 0.0027 24.2 8.0 58 81-148 3-60 (63)
40 2l5g_B Putative uncharacterize 50.1 6.4 0.00022 29.6 1.5 23 131-153 8-30 (42)
41 3u1c_A Tropomyosin alpha-1 cha 50.1 44 0.0015 27.8 6.8 42 109-150 28-69 (101)
42 2l5g_B Putative uncharacterize 47.9 24 0.00082 26.5 4.2 31 115-152 6-36 (42)
43 1nlw_A MAD protein, MAX dimeri 45.8 1.2E+02 0.004 24.5 9.5 38 114-151 43-80 (80)
44 3oja_B Anopheles plasmodium-re 44.4 2.5E+02 0.0086 28.0 12.4 40 114-153 533-572 (597)
45 3hnw_A Uncharacterized protein 44.4 21 0.00073 31.5 4.2 23 130-152 108-130 (138)
46 3cvf_A Homer-3, homer protein 44.3 16 0.00054 30.3 3.1 46 108-153 3-48 (79)
47 4f61_I Stathmin-like domain R4 44.2 1.6E+02 0.0055 28.8 10.5 24 72-95 94-117 (240)
48 1nkp_B MAX protein, MYC proto- 43.3 1.2E+02 0.0041 23.9 9.8 49 102-153 34-82 (83)
49 3c9i_A Tail needle protein GP2 41.2 39 0.0013 32.8 5.7 58 109-174 89-146 (242)
50 3lay_A Zinc resistance-associa 40.8 22 0.00077 32.6 3.9 47 107-153 74-127 (175)
51 3gpv_A Transcriptional regulat 40.3 63 0.0022 27.9 6.5 12 103-114 73-84 (148)
52 1jnm_A Proto-oncogene C-JUN; B 40.3 33 0.0011 26.1 4.2 38 118-155 22-59 (62)
53 1ic2_A Tropomyosin alpha chain 39.8 87 0.003 24.9 6.8 43 109-151 25-67 (81)
54 2xdj_A Uncharacterized protein 39.8 46 0.0016 27.4 5.2 38 114-151 23-60 (83)
55 2oqq_A Transcription factor HY 39.6 26 0.00089 26.3 3.3 17 107-123 6-22 (42)
56 3gp4_A Transcriptional regulat 39.0 68 0.0023 27.7 6.5 51 103-153 59-116 (142)
57 3ghg_C Fibrinogen gamma chain; 38.8 1.7E+02 0.0059 30.3 10.4 50 115-164 95-144 (411)
58 1zxa_A CGMP-dependent protein 38.3 33 0.0011 27.7 4.0 43 114-156 14-56 (67)
59 2eqb_B RAB guanine nucleotide 38.2 92 0.0031 26.7 7.0 45 109-153 24-68 (97)
60 3k29_A Putative uncharacterize 36.8 2.7E+02 0.0091 26.0 11.3 87 39-152 14-112 (169)
61 1fzc_C Fibrin; blood coagulati 36.6 12 0.00041 37.3 1.5 49 115-163 8-56 (319)
62 3trt_A Vimentin; cytoskeleton, 36.6 86 0.0029 24.3 6.1 16 137-152 54-69 (77)
63 2w6b_A RHO guanine nucleotide 36.4 54 0.0018 25.9 4.8 31 107-137 17-50 (56)
64 1lwu_C Fibrinogen gamma chain; 35.1 43 0.0015 33.4 5.2 37 108-151 2-38 (323)
65 1i84_S Smooth muscle myosin he 34.7 1.7E+02 0.0059 33.0 10.4 46 108-153 959-1004(1184)
66 3lf9_A 4E10_D0_1IS1A_001_C (T1 34.7 1.8E+02 0.006 25.9 8.4 56 52-112 29-84 (121)
67 3qh9_A Liprin-beta-2; coiled-c 34.5 90 0.0031 26.2 6.2 35 119-153 3-40 (81)
68 1t2k_D Cyclic-AMP-dependent tr 34.1 52 0.0018 24.9 4.4 36 118-153 22-57 (61)
69 1gd2_E Transcription factor PA 33.9 80 0.0027 25.3 5.6 13 138-150 56-68 (70)
70 1deq_A Fibrinogen (alpha chain 33.3 2E+02 0.0067 29.9 9.7 155 27-188 53-227 (390)
71 1c1g_A Tropomyosin; contractIl 33.2 1.1E+02 0.0039 25.8 6.8 40 109-148 81-120 (284)
72 1x4t_A Hypothetical protein LO 33.1 45 0.0015 28.5 4.2 16 117-132 58-73 (92)
73 2zqm_A Prefoldin beta subunit 33.1 1.1E+02 0.0039 24.6 6.6 46 108-153 67-112 (117)
74 3mq7_A Bone marrow stromal ant 32.9 58 0.002 29.0 5.0 38 113-150 73-110 (121)
75 2yko_A LINE-1 ORF1P; RNA-bindi 32.3 35 0.0012 33.1 3.9 58 110-167 5-62 (233)
76 1ge9_A Ribosome recycling fact 32.0 2.1E+02 0.007 26.5 8.8 50 54-111 105-154 (184)
77 2lf0_A Uncharacterized protein 31.7 36 0.0012 30.4 3.5 44 109-153 8-57 (123)
78 3ctw_B RCDA; protein binding; 31.2 11 0.00037 35.1 0.2 70 82-156 96-168 (169)
79 1rv3_A Serine hydroxymethyltra 30.6 1.1E+02 0.0039 30.0 7.3 58 103-160 411-480 (483)
80 1vcs_A Vesicle transport throu 30.5 68 0.0023 26.6 4.9 20 105-124 10-29 (102)
81 3oa7_A Head morphogenesis prot 30.3 1.3E+02 0.0044 28.9 7.2 77 85-166 9-86 (206)
82 3ghg_A Fibrinogen alpha chain; 30.0 88 0.003 33.8 6.7 40 83-126 114-153 (562)
83 2dfs_A Myosin-5A; myosin-V, in 29.2 46 0.0016 37.7 4.7 17 180-196 1019-1035(1080)
84 1uii_A Geminin; human, DNA rep 29.1 75 0.0026 26.7 4.9 34 114-151 49-82 (83)
85 2wt7_A Proto-oncogene protein 28.9 71 0.0024 24.5 4.4 36 118-153 23-58 (63)
86 2ke4_A CDC42-interacting prote 28.6 2.5E+02 0.0086 23.6 8.1 27 109-135 60-86 (98)
87 1wqg_A Ribosome recycling fact 28.2 1.4E+02 0.0048 27.6 7.1 52 54-110 103-154 (185)
88 2ynz_A General control protein 28.2 91 0.0031 28.8 5.7 44 109-152 4-54 (154)
89 1is1_A Ribosome recycling fact 28.0 1.4E+02 0.0049 27.6 7.1 52 54-110 103-154 (185)
90 1x79_B RAB GTPase binding effe 27.8 1.7E+02 0.0057 25.6 7.0 42 106-147 8-53 (112)
91 3u1c_A Tropomyosin alpha-1 cha 27.7 1.6E+02 0.0054 24.5 6.7 14 138-151 85-98 (101)
92 1xdx_A Tctex1 light chain prot 27.5 85 0.0029 26.1 5.0 48 103-152 12-59 (114)
93 1ic2_A Tropomyosin alpha chain 27.5 1.2E+02 0.0042 24.0 5.7 14 114-127 44-57 (81)
94 3viq_B Mating-type switching p 27.2 1.1E+02 0.0039 25.6 5.6 31 104-134 1-31 (85)
95 3ol1_A Vimentin; structural ge 27.1 1.1E+02 0.0037 26.1 5.7 75 109-192 18-98 (119)
96 3ryc_E Stathmin-4; alpha-tubul 26.9 2.2E+02 0.0075 25.9 7.8 23 72-94 95-117 (143)
97 1kd8_A GABH AIV, GCN4 acid bas 26.9 84 0.0029 23.0 4.1 28 114-141 4-31 (36)
98 2v71_A Nuclear distribution pr 26.8 1.4E+02 0.0048 28.0 6.8 46 107-152 98-143 (189)
99 2aze_A Transcription factor DP 26.6 78 0.0027 29.1 4.9 36 118-153 5-40 (155)
100 3vp9_A General transcriptional 26.6 76 0.0026 26.9 4.5 29 125-153 35-64 (92)
101 2efr_A General control protein 26.5 2.9E+02 0.01 25.0 8.7 68 79-153 70-137 (155)
102 4gfq_A Ribosome-recycling fact 26.4 2E+02 0.0067 27.4 7.8 54 54-112 127-180 (209)
103 4b4t_K 26S protease regulatory 25.8 82 0.0028 32.0 5.5 47 107-153 45-91 (428)
104 3mq9_A Bone marrow stromal ant 25.7 4.8E+02 0.016 25.5 12.5 31 123-153 434-464 (471)
105 3htk_A Structural maintenance 25.6 1.5E+02 0.0052 21.8 5.6 8 116-123 10-17 (60)
106 1f5n_A Interferon-induced guan 25.4 1.8E+02 0.0062 30.9 8.2 19 130-148 565-583 (592)
107 1v64_A Nucleolar transcription 25.0 63 0.0022 26.8 3.7 40 103-142 38-77 (108)
108 1v63_A Nucleolar transcription 25.0 47 0.0016 27.1 3.0 41 100-140 28-68 (101)
109 2jee_A YIIU; FTSZ, septum, coi 24.9 1.2E+02 0.0043 25.1 5.4 48 108-155 31-78 (81)
110 3u59_A Tropomyosin beta chain; 24.9 1.9E+02 0.0066 23.7 6.7 15 137-151 84-98 (101)
111 2d4y_A HAP1, flagellar HOOK-as 24.2 1.4E+02 0.0048 29.9 6.8 46 110-155 74-119 (463)
112 2c5k_T Syntaxin TLG1, T-snare 23.9 36 0.0012 28.4 2.0 20 105-124 37-56 (95)
113 1dd5_A Ribosome recycling fact 23.8 1.5E+02 0.0051 27.5 6.3 52 54-110 103-154 (185)
114 1ise_A Ribosome recycling fact 23.6 1.5E+02 0.0051 27.5 6.3 52 54-110 103-154 (185)
115 2lw4_A Transcription elongatio 23.6 62 0.0021 27.6 3.5 70 107-187 10-83 (113)
116 3cve_A Homer protein homolog 1 23.5 1.2E+02 0.004 24.8 4.9 39 115-153 4-42 (72)
117 1gu4_A CAAT/enhancer binding p 23.3 70 0.0024 26.1 3.6 38 109-146 34-71 (78)
118 2akf_A Coronin-1A; coiled coil 23.2 65 0.0022 22.9 2.9 19 107-125 9-27 (32)
119 2wg5_A General control protein 23.1 47 0.0016 28.0 2.6 31 116-153 5-35 (109)
120 3a7p_A Autophagy protein 16; c 23.0 83 0.0028 28.9 4.4 47 108-154 72-118 (152)
121 3htk_A Structural maintenance 22.8 2.3E+02 0.0078 20.8 6.3 19 131-149 39-57 (60)
122 2wq1_A General control protein 22.8 65 0.0022 23.2 2.9 23 115-137 4-26 (33)
123 2xv9_A ABA-1A1 repeat UNIT; li 22.7 1.2E+02 0.0043 26.9 5.4 45 107-153 63-107 (134)
124 1l4a_D S-SNAP25 fusion protein 22.6 1.8E+02 0.0063 23.6 6.0 45 107-151 40-84 (87)
125 3qao_A LMO0526 protein, MERR-l 22.5 95 0.0033 29.1 4.9 50 104-153 61-111 (249)
126 2qyw_A Vesicle transport throu 22.2 76 0.0026 26.4 3.7 17 108-124 46-62 (102)
127 3ghg_A Fibrinogen alpha chain; 22.1 1.7E+02 0.0057 31.7 7.0 17 147-163 157-173 (562)
128 2wq1_A General control protein 21.6 94 0.0032 22.4 3.5 24 130-153 5-28 (33)
129 4etp_A Kinesin-like protein KA 21.3 1.2E+02 0.0042 30.5 5.7 38 114-151 6-43 (403)
130 1i27_A Transcription factor II 21.1 1.1E+02 0.0037 25.2 4.3 55 282-341 11-65 (73)
131 3efg_A Protein SLYX homolog; x 20.8 89 0.003 25.3 3.7 32 122-153 11-42 (78)
132 3mtu_A Tropomyosin alpha-1 cha 20.8 1.8E+02 0.0062 23.2 5.5 21 131-151 43-63 (75)
133 4h9n_C Death domain-associated 20.8 94 0.0032 29.7 4.5 44 110-153 15-67 (212)
134 1rh1_A Colicin B; FEPA, cytoto 20.6 4.7E+02 0.016 28.0 9.9 31 144-181 351-381 (511)
135 2oqq_A Transcription factor HY 20.5 2.5E+02 0.0086 21.1 5.7 25 129-153 7-31 (42)
136 1ez3_A Syntaxin-1A; three heli 20.3 1.7E+02 0.0058 23.8 5.4 19 108-126 58-76 (127)
No 1
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=2e-64 Score=465.70 Aligned_cols=165 Identities=28% Similarity=0.482 Sum_probs=108.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy9560 51 RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYEL 130 (503)
Q Consensus 51 AKKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDL 130 (503)
.+|||||++||++||+|||++|+++|++|+++++++|++||+||| ++|||||||+++|+++|++||+||++||++||||
T Consensus 6 ~kk~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~-kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 378999999999999999999999999999999999999999999 5789999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHH-HH-HH-hhhhccchhhhcccccccccchhhhhhccCccc
Q psy9560 131 DREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKF-AK-LQ-KKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEW 207 (503)
Q Consensus 131 E~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~-a~-L~-KhkvsmDfRANLKqVKKEe~~leEeekeeVgDW 207 (503)
|++|++|+|||++||+|||||+|||+||+|||||||+|.| .+ |+ ||+++||||+|||||||++. ++++++||||
T Consensus 85 E~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke~~---e~~~~~~~dW 161 (180)
T 1j1e_C 85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDT---EKENREVGDW 161 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHSCC--------------------------------
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccccc---cccccccchH
Confidence 9999999999999999999999999999999999999654 44 53 89999999999999999863 4456699999
Q ss_pred cccchhhccCCC
Q psy9560 208 VKEPESKKKRIP 219 (503)
Q Consensus 208 RKNiE~K~~~e~ 219 (503)
|||||++++|+-
T Consensus 162 rkn~e~~~gm~g 173 (180)
T 1j1e_C 162 RKNIDALSGMEG 173 (180)
T ss_dssp ------------
T ss_pred HHHHHHhcCcch
Confidence 999999999863
No 2
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=100.00 E-value=4.7e-63 Score=457.18 Aligned_cols=163 Identities=25% Similarity=0.436 Sum_probs=130.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy9560 52 KKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131 (503)
Q Consensus 52 KKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE 131 (503)
+++|||++||++||+|||++|+++|++|+++++++|++||+||| +|||||| |+++|+++|++||+||++||++|||||
T Consensus 5 ~k~kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eeKkkiLaER~-kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 5 KKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHS-PPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67899999999999999999999999999999999999999999 6889999 999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHH-HHHH-HH-hhhhccchhhhcccccccccchhhhhhc--cCcc
Q psy9560 132 REIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYEN-KFAK-LQ-KKAAEFNFRSQLKAVKKREFSMEDAEKE--KKPE 206 (503)
Q Consensus 132 ~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAn-m~a~-L~-KhkvsmDfRANLKqVKKEe~~leEeeke--eVgD 206 (503)
++|++|+|||++||+|||||+|||+||+|||||||+| ||.. |+ ||+++||||+|||||||+++ +++++ +|||
T Consensus 83 ~kvkkq~yEI~dL~~rVnDLrGKfkKP~LkkV~~sad~m~kallg~k~k~~~d~RanLK~Vkke~~---e~~~~~~~~~d 159 (182)
T 1ytz_I 83 VKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDT---EKEKDLRDVGD 159 (182)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTCSCSSCSSCCCCCCHHHHHHHHHTTCCCCCCSSCCCCCCC-------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhhccccHhHHHHHHhCCCchhhhhHHHhccccccchh---hhhhhhccccc
Confidence 9999999999999999999999999999999999995 4555 44 88999999999999999873 34455 8999
Q ss_pred ccccchhhccCCC
Q psy9560 207 WVKEPESKKKRIP 219 (503)
Q Consensus 207 WRKNiE~K~~~e~ 219 (503)
||||||++++|+-
T Consensus 160 Wrkn~e~~~gm~g 172 (182)
T 1ytz_I 160 WRKNIEEKSGMEG 172 (182)
T ss_dssp -------------
T ss_pred HHHHHHhhcCcch
Confidence 9999999999864
No 3
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=1.6e-48 Score=345.86 Aligned_cols=122 Identities=30% Similarity=0.511 Sum_probs=109.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy9560 51 RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYEL 130 (503)
Q Consensus 51 AKKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDL 130 (503)
++|||||++||++||+|||++|+++|++|+++++++|++||+||| +++||||||+++|+++|++||+||++||+|||||
T Consensus 6 ~~k~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~-~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 378999999999999999999999999999999999999999999 6889999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccH-HHHHHH
Q psy9560 131 DREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE-NKFAKL 173 (503)
Q Consensus 131 E~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSA-nm~a~L 173 (503)
|++|++|+|||++||+|||||+|||+||+|||||||+ .||..|
T Consensus 85 E~kvkkq~yEI~dL~~rV~Dl~gKfkKP~LkkVr~sad~ml~al 128 (133)
T 1j1d_C 85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQAL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCCCCCHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHcccCCCccCccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999 456555
No 4
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=99.96 E-value=2.4e-30 Score=222.38 Aligned_cols=90 Identities=26% Similarity=0.480 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHH
Q psy9560 68 LRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ 147 (503)
Q Consensus 68 LLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniK 147 (503)
+|+++..... ..++.+++|++||+||| +||||||||+++|+++|++||+||++||+||||||++|++|+|||++||+|
T Consensus 8 ~~~k~e~~~~-k~q~e~EeKkkiLaER~-~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r 85 (107)
T 1ytz_T 8 YLAKADQKRG-KKQTARETKKKVLAERR-KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR 85 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHTC-CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-HHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 4566555543 33445568999999999 688999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCcc
Q psy9560 148 VNDLRGKFVRPIL 160 (503)
Q Consensus 148 VnDLRGKFKKPaL 160 (503)
|||| |||+||+.
T Consensus 86 V~dl-gKfkKp~~ 97 (107)
T 1ytz_T 86 IDQA-QKHSKKAG 97 (107)
T ss_dssp HHHT-CCCC----
T ss_pred HHHh-cCccCCCC
Confidence 9999 99999987
No 5
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=99.96 E-value=2.6e-30 Score=222.03 Aligned_cols=91 Identities=30% Similarity=0.480 Sum_probs=66.7
Q ss_pred HHHH-HHHHHHHHHHHH-HHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHH
Q psy9560 68 LRKK-AAEELKREQERR-ALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELG 145 (503)
Q Consensus 68 LLqK-AaEELEKEKEqK-eEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELn 145 (503)
+|++ |..+..+.+++. +++|++||+||| +||||||||+++|+++|++||+||++||+||||||++|++|+|||++||
T Consensus 5 ~l~~~~~~e~~~~k~q~ereeKkkiLaER~-kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~ 83 (106)
T 1j1d_B 5 YIQKQAQTERKSGKRQTEREKKKKILAERR-KVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLR 83 (106)
T ss_dssp ---------------CCHHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhcccHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH
Confidence 4555 334444445554 599999999999 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCcc
Q psy9560 146 KQVNDLRGKFVRPIL 160 (503)
Q Consensus 146 iKVnDLRGKFKKPaL 160 (503)
+||||| |||+||+-
T Consensus 84 ~rV~dl-gKf~Kp~~ 97 (106)
T 1j1d_B 84 NRINDN-QKVSKTRG 97 (106)
T ss_dssp HHHHTC---------
T ss_pred HHHHHh-cCccCCCC
Confidence 999999 99999974
No 6
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=99.16 E-value=2.6e-12 Score=97.28 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=27.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9560 52 KKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDER 94 (503)
Q Consensus 52 KKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAER 94 (503)
+++|||++||++||+|||++|.++|++|+++++++|++||+||
T Consensus 5 ~k~kms~sRK~~LKslmL~~A~~~Le~E~~~k~~eK~~~L~Er 47 (47)
T 1a2x_B 5 KRNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEH 47 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999999999986
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.52 E-value=7.8 Score=33.36 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 106 EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 106 edELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
..+|..++++|..++...++...+|...-++...+|.+|+..|.|+-...
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999997643
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=85.54 E-value=7.9 Score=35.60 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDRE 133 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~K 133 (503)
-.||++-+.+|+.++ ++...+...-+++....|..+-+... -+..|.+.++++.+++.+.=.+|..+|.++..+
T Consensus 66 LnLT~EQq~ql~~I~-~e~r~~~~~Lr~ql~akr~EL~aL~~-----a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 66 SPLTTEQQATAQKIY-DDYYTQTSALRQQLISKRYEYNALLT-----ASSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp --CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999988864 44443333222333333333322222 255678999999999999999999999888887
Q ss_pred Hhhh
Q psy9560 134 IMLK 137 (503)
Q Consensus 134 VkKQ 137 (503)
+.+.
T Consensus 140 m~Ke 143 (175)
T 3lay_A 140 MAQA 143 (175)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7654
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=84.03 E-value=13 Score=30.42 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=46.7
Q ss_pred hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 92 DERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 92 AERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
...|| . --+.++......+..++...|..+..+..+|...+...+.+|..|+.++.||.+
T Consensus 47 g~~CP-v-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 106 (112)
T 1l8d_A 47 KGKCP-V-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTP 106 (112)
T ss_dssp SEECT-T-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCC-C-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45794 3 234456666677888899999999999999999999999999999999885543
No 10
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.05 E-value=2.5 Score=42.63 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC-----CCCcccc
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF-----VRPILKK 162 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF-----KKPaLKK 162 (503)
..|++.+.+|-+.|..++.+.-+|..++.+.+.....|.++|+||+|.+ +||.+.+
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~ 73 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN 73 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence 5688889999999999999999999999999999999999999999985 5887765
No 11
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=78.94 E-value=1.7 Score=38.80 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred hh-hhhHHhhccccCCCCccHHHHHHHHHHhhhcCchhhHHHHHHHHHhhhhccccccCC
Q psy9560 283 PE-ELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341 (503)
Q Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
.| -||-+||..+.....-|+++|.+.+..+....++-.+..+|...-+|-..--+..||
T Consensus 165 ie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~r~~~vi~~~G~ 224 (227)
T 2f7t_A 165 SDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGK 224 (227)
T ss_dssp HHHTHHHHHHHHHHTCCBCSHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHHHHHHTTTS
T ss_pred ccchhhHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 46 699999999998888999999999999999999989988888777775544444454
No 12
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=77.89 E-value=2.8 Score=37.90 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=47.8
Q ss_pred hhhHHhhccccCCCCccHHHHHHHHHHhhhcCchhhHHHHHHHHHhhhhccccccCC
Q psy9560 285 ELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341 (503)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
-||.+||..+.....-|+++|.+.+..++..-++-.+..+|....+|-..--+..||
T Consensus 167 ~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~R~~~vi~~~G~ 223 (226)
T 3f2k_A 167 HVFKHLNNFLQGKRFHNQQDAENAFQEFVESQSTDFYATGINQLISRWQKCVDCNGS 223 (226)
T ss_dssp THHHHHHHHHTTCBCSSHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHhHHhhcCcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 599999999988888899999999999999999999999988877775544444444
No 13
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=76.53 E-value=1.4 Score=36.88 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHH
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ 147 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniK 147 (503)
++|--++..+|+||--.|.|++-.+-||..|..+
T Consensus 29 ~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 29 RHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444455555555555555555555555554444
No 14
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.98 E-value=8.7 Score=31.45 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHH
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ 147 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniK 147 (503)
.+.+-|+.|-..+.+.+..|++|+.++.+...+.++|..+
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888899999999999999999999998888
No 15
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.01 E-value=4.8 Score=40.92 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
.+|++.+++|-+.|..+..+.-++..++.+.+.+-..|.+.|+||+|.+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 5678888888888888888888888888888888899999999999974
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.82 E-value=5.1 Score=33.45 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCC
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRP 158 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKP 158 (503)
=+..-.+++.++..|+.+.-.|..+|.....|+..|+.-+.++.|.|.++
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~ 83 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLAS 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcc
Confidence 34455678888999999999999999999999999999999999977765
No 17
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=74.27 E-value=4.2 Score=37.62 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCCCCCChhh--hhHHhhccccCCCCccHHHHHHHHHHhhhcCchhhHHHHHHHHHhhhhccccccCC
Q psy9560 274 TPPSPVTPNPEE--LWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341 (503)
Q Consensus 274 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
.||-..--|+-| ||-+||..+.....-|+++|...+...+...++-.+..+|....+|-..--+..||
T Consensus 273 ~p~~spdlnpie~~~~~~lk~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~r~~~~i~~~G~ 342 (345)
T 3hot_A 273 HAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGK 342 (345)
T ss_dssp CCTTCGGGCHHHHTHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCcccccchhhHHHHHHhccccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 344333445544 89999999988888899999999999999999999999998887775544444444
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.90 E-value=12 Score=30.69 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 100 DTDDMA-EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 100 nIDGLS-edELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+|.|++ ..+||...++--+.|...|+--=+++..+..++.+|.+|+..+..+|-
T Consensus 14 ~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 14 SIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445544 578888888777888888888888999999999999999999887765
No 19
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.29 E-value=6.2 Score=32.11 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCC
Q psy9560 104 MAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFV 156 (503)
Q Consensus 104 LSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFK 156 (503)
++.++|.+-+.+|=-+|.-.|.--=+|+.-|.+|..+|..|..++..|.++++
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777888888888888888888888888765
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.28 E-value=1.1e+02 Score=30.72 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHhhCCC-CCCcccccc
Q psy9560 136 LKDFEITELGKQVNDLRGKF-VRPILKKVS 164 (503)
Q Consensus 136 KQDyEInELniKVnDLRGKF-KKPaLKKVR 164 (503)
....|++.++.++.+|..|+ +-|--|||+
T Consensus 562 ~l~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 591 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAKKNRNPDTRRVS 591 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 33344455555555555554 345555554
No 21
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=66.16 E-value=65 Score=34.23 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhC
Q psy9560 141 ITELGKQVNDLRG 153 (503)
Q Consensus 141 InELniKVnDLRG 153 (503)
++.|+..|++|+.
T Consensus 569 ~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 569 SRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.39 E-value=14 Score=28.67 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnD 150 (503)
=++.+.+|++.+..|+.+.-+|..+|.....||..|+.=|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355678889999999999999999999999999998877765
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=64.24 E-value=50 Score=30.67 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHH--------------hhhhhhHHHHHHHHHHhhCC
Q psy9560 106 EDEIGDLCQEYWQRIYNLEAIKYELDREI--------------MLKDFEITELGKQVNDLRGK 154 (503)
Q Consensus 106 edELQEkCKELHdRIdkLEEEKYDLE~KV--------------kKQDyEInELniKVnDLRGK 154 (503)
...|..+|+||.++++.|+..|-.|+.-+ .+..--|.||.-||.-|...
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777776666 33334466777777777663
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.02 E-value=16 Score=31.48 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
.+.+-|+.|...+.+.+..|.+|+.++.+...++++|..+++.-++
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~ 62 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888999999999999998999998888776555
No 25
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.90 E-value=58 Score=26.53 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.2
Q ss_pred HhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 90 iLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
.|...+|...+-..+|-..+- +.=.+.|..|..+.-.+...+.....+...|+.+|..|+|
T Consensus 27 ~Lr~~vP~~~~~~K~sK~~iL---~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 27 ALRDQIPELENNEKAPKVVIL---KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHTTCGGGTTCTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555321112345544432 3334567777777777777777888889999999999987
No 26
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=63.69 E-value=9.8 Score=37.99 Aligned_cols=54 Identities=22% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCcc
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPIL 160 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaL 160 (503)
..|++-..+|-..|...+.....|+..+..++..|.+|.++|++|+.++..+.+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~~ 61 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445555555677777778888888888889999999999999999988877653
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.31 E-value=1.3e+02 Score=30.87 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHH-------hhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccc
Q psy9560 110 GDLCQEYWQRIYNL-------EAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKV 163 (503)
Q Consensus 110 QEkCKELHdRIdkL-------EEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKV 163 (503)
-...++|.+.|.+| +..-..|+..+..++..|..|+++|.+|..++..+.+.-|
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~~~~~~~ 143 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPCKDTA 143 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESC
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33445555555544 4478889999999999999999999999998888775544
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.86 E-value=25 Score=39.78 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=20.3
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 129 ELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 129 DLE~KVkKQDyEInELniKVnDLRG 153 (503)
||+.+|.....++..|++++.||.+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888874
No 29
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=58.54 E-value=32 Score=27.01 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 103 DMAEDEIGDLCQEY--------WQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 103 GLSedELQEkCKEL--------HdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
|||.++++++..-. .+++..|+..+-.|+.++.....-+..|...+....+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68888888887533 2455666666666666666655555555555555544
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.14 E-value=22 Score=31.47 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhh-------hhhhHHHHHHHHHHhhC
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELDREIML-------KDFEITELGKQVNDLRG 153 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE~KVkK-------QDyEInELniKVnDLRG 153 (503)
++.+..|-..|..++.+-|||-..+.. ...+|.+|+.++++|++
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555444443 34444555555555544
No 31
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=57.91 E-value=3 Score=34.35 Aligned_cols=39 Identities=38% Similarity=0.404 Sum_probs=29.1
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHHHHHH
Q psy9560 128 YELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQ 174 (503)
Q Consensus 128 YDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~a~L~ 174 (503)
-||..+|..++.||..||.=|-.||||.. +|-.+-.+|+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLi--------KYtelnKKLe 44 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLE--------KYVDITKKLE 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 46777788889999999999999999643 4554445553
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.52 E-value=22 Score=26.95 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHH
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQV 148 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKV 148 (503)
++.+.+|..++..|+.+.-+|...|.....||..|++.|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777766666666666665543
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.29 E-value=9.5 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHH
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ 147 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniK 147 (503)
++.+.+|.+++..|+.+.-.|...|.....+|..|++.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666665555444444444443
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.59 E-value=1e+02 Score=30.45 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 111 EkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
..++.+...|.++.+++=-++..+...+..|.+-+.+++|+-
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 345666777888887777777777777777888777777763
No 35
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=54.75 E-value=20 Score=28.57 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHhhhhhhHHH
Q psy9560 83 RALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEA--IKYELDREIMLKDFEITE 143 (503)
Q Consensus 83 KeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEE--EKYDLE~KVkKQDyEInE 143 (503)
.-++|.+.|.+.+ +.+--.| ..++|+.+..+|..+|..|-. +--.++..|++.+.||..
T Consensus 6 aleekvkaleekv-kalgggg-rieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 6 ALEEKVKALEEKV-KALGGGG-RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHH-HHSCCSS-SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCc-cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 3467777888888 4444333 678999999999998887743 344455556666655543
No 36
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.78 E-value=26 Score=30.51 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 100 DTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 100 nIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
.|.+||-++|-.-|-+|-.++.+++++---|....+.....|.+|-.+|..|+
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 35678999999899999999999987765554444444444555555544443
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.89 E-value=23 Score=33.15 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 106 EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 106 edELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
.++|++....|..+|..+..+.-|++..+++.+.+|.+++.||...+.+.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999988754
No 38
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=51.23 E-value=50 Score=28.88 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q psy9560 72 AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIM 135 (503)
Q Consensus 72 AaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVk 135 (503)
++++..+.-...+.--.+++..+.. .++.+-++|..+++||..-|..|+.+-=||+.-|.
T Consensus 32 Vk~EVq~sl~~l~~l~~~w~~l~~~----~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLYQRWCELLQE----SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444455443331 22234467888888888888877766666655444
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.20 E-value=80 Score=24.16 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHH
Q psy9560 81 ERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQV 148 (503)
Q Consensus 81 EqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKV 148 (503)
.++.-+|-++=+-||- +.=++.+.+|.+.+..|+.+.-+|...|.....++..|+.-+
T Consensus 3 r~rrrerNR~AA~rcR----------~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 3 RRIRRERNKMAAAKCR----------NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666662 223456777888888888777777776665555555555444
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.12 E-value=6.4 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 131 DREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 131 E~KVkKQDyEInELniKVnDLRG 153 (503)
-.++.|-|.||.--..+|++|++
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=50.05 E-value=44 Score=27.84 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnD 150 (503)
++..++.+-++..+++++--.|..|+.....++..+..++.+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 42
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.90 E-value=24 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 115 EYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 115 ELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
+|.++|++||-| +.+....|++|..|..+|.
T Consensus 6 ~l~qkI~kVdrE-------I~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDRE-------ITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 455677777644 4455566888888877764
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.84 E-value=1.2e+02 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
+.=.+.|..|.++.-.+.........++..|+.+++.|
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33346677777777777777777777888888887654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.42 E-value=2.5e+02 Score=28.02 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
.++-..++.++.++-.|+.++..+...+.+|++.+++++-
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3334445666677777777777777778888877777644
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.35 E-value=21 Score=31.50 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 130 LDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 130 LE~KVkKQDyEInELniKVnDLR 152 (503)
+...+.+...+|++|..++..|.
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666655554
No 46
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.28 E-value=16 Score=30.28 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+|+.-|.++.++|..++....+|+.+|.....+|++-+.+-+.+++
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667799999999999999999999999888888887777666665
No 47
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=44.16 E-value=1.6e+02 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q psy9560 72 AAEELKREQERRALERKRVIDERC 95 (503)
Q Consensus 72 AaEELEKEKEqKeEEKKKiLAERc 95 (503)
+.+.|....+.-.+.|..||+...
T Consensus 94 aeEkL~~KME~~kEnReA~laal~ 117 (240)
T 4f61_I 94 AKEKLAQKMESNKENREAHFAAML 117 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456677777777888888888754
No 48
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.33 E-value=1.2e+02 Score=23.89 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 102 DDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 102 DGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
..+|-..+-..+- +.|..|..+.-.|+..+.....++..|+.++..|.|
T Consensus 34 ~k~sK~~iL~~Ai---~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 34 EKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp SCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456555433332 445555555556666777777888899999988876
No 49
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=41.23 E-value=39 Score=32.83 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHHHHHH
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQ 174 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~a~L~ 174 (503)
++...-.--.||..-+..--+||.++...+.+|..|..+|++|.| ||.--+.....|+
T Consensus 89 ~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~--------~vt~~et~Isal~ 146 (242)
T 3c9i_A 89 LRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDG--------RVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred hhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcc--------cccccccchhhhh
Confidence 333334445689999999999999999999999999999999999 4544444455554
No 50
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.76 E-value=22 Score=32.62 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hhhHHHHHhhhh---hhHHHHHHHHHHhhC
Q psy9560 107 DEIGDLCQEYWQRIYNLEAI----KYELDREIMLKD---FEITELGKQVNDLRG 153 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEE----KYDLE~KVkKQD---yEInELniKVnDLRG 153 (503)
++|++|.++++..+..|..+ |++|..-+...+ ..|+.|..+|++||+
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 45777777777777665433 333332222111 245555555555555
No 51
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.33 E-value=63 Score=27.90 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHH
Q psy9560 103 DMAEDEIGDLCQ 114 (503)
Q Consensus 103 GLSedELQEkCK 114 (503)
|++.+++++++.
T Consensus 73 G~sL~eIk~~l~ 84 (148)
T 3gpv_A 73 GMPIQKIKQFID 84 (148)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 566666666554
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.29 E-value=33 Score=26.13 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 118 QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 118 dRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
++|..|+..--+|+........+|..|+..|..|++.|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777644
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.84 E-value=87 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
++..+++...+..+++++-=.|..|+.....++..+..++.+.
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555554455555544444444444444443
No 54
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.81 E-value=46 Score=27.42 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
-+|..+|+.|..|-=+|--.|..+.|+|+.|..+-.|+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777765443
No 55
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.56 E-value=26 Score=26.34 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9560 107 DEIGDLCQEYWQRIYNL 123 (503)
Q Consensus 107 dELQEkCKELHdRIdkL 123 (503)
.+|...+|+|+.++..|
T Consensus 6 ~eLE~r~k~le~~naeL 22 (42)
T 2oqq_A 6 SELENRVKDLENKNSEL 22 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555554433
No 56
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.01 E-value=68 Score=27.66 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 103 DMAEDEIGDLCQEY-------WQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 103 GLSedELQEkCKEL-------HdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
|++.+++++++.-+ -+++..|++.+-.|+.++.....-+..|..+|...++
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555422 2333334444444444444444444444444444433
No 57
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.75 E-value=1.7e+02 Score=30.25 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCcccccc
Q psy9560 115 EYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164 (503)
Q Consensus 115 ELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVR 164 (503)
.|-..|...+..-..|+..+..++..|++|+++|+.|..+...|-...|.
T Consensus 95 ~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~~~~~~~ 144 (411)
T 3ghg_C 95 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQ 144 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence 33444444556667778888999999999999999999999888654443
No 58
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.31 E-value=33 Score=27.67 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCC
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFV 156 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFK 156 (503)
.+|+..|..=|+.-=+||..+..++.+|..|+..+.-++-=|.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555666667888899999999999999998887553
No 59
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.18 E-value=92 Score=26.70 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+..-|+.|.+.+..-..-|.+.|....+.+.||.+|+..+|+=-.
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666667888889999999999999999988544
No 60
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=36.76 E-value=2.7e+02 Score=26.03 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCCCCCCCCCCHHHHHH----
Q psy9560 39 VRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQER---RALERKRVIDERCGEPKDTDDMAEDEIGD---- 111 (503)
Q Consensus 39 vRKRlEEA~KkKAKKgKMT~eRKkkLKSLLLqKAaEELEKEKEq---KeEEKKKiLAERcpPPLnIDGLSedELQE---- 111 (503)
..+|.+++.+ .++-+...|++|++. .+.++.+..+.+.. -.++|++
T Consensus 14 k~~r~e~aek-------------------~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~--------k~~qlre~~d~ 66 (169)
T 3k29_A 14 KKDRVDRAEK-------------------VVKEKRRLLELEQEKLRERESERDKVKNHYMQ--------KIRQLREQLDD 66 (169)
T ss_dssp HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhc
Q ss_pred -----HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 112 -----LCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 112 -----kCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
.+..+-..|..|++.-.+++.+|..+..-+..-+..+.+-+
T Consensus 67 gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar 112 (169)
T 3k29_A 67 GTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAE 112 (169)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.64 E-value=12 Score=37.30 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccc
Q psy9560 115 EYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKV 163 (503)
Q Consensus 115 ELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKV 163 (503)
.|..+|..+++....|...+..++..|.+|..+|++|+.++..+.+.-|
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~~~~ 56 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTV 56 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEESC
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3445566666666666677777778899999999999888777654433
No 62
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.64 E-value=86 Score=24.26 Aligned_cols=16 Identities=38% Similarity=0.381 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHhh
Q psy9560 137 KDFEITELGKQVNDLR 152 (503)
Q Consensus 137 QDyEInELniKVnDLR 152 (503)
...||.+||..|+.|+
T Consensus 54 ~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 54 AKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666666654
No 63
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.39 E-value=54 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hhhHHHHHhhh
Q psy9560 107 DEIGDLCQEYWQRIYNLEAI---KYELDREIMLK 137 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEE---KYDLE~KVkKQ 137 (503)
|++++|++++..--..||+| |-|||.-|++.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999888877888887 67888888776
No 64
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.10 E-value=43 Score=33.42 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
.+..+|+.|.+.|.+|+. .|..++..|..|...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~e~-------~i~~~~~~i~~L~~~l~~~ 38 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQ-------IGVSHDAQIQELSEMWRVN 38 (323)
T ss_dssp ---CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-------HHhcHHHHHHHHHHHHHHH
Confidence 355677888887777654 4555555555555554443
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.70 E-value=1.7e+02 Score=32.99 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+|+.-..++-..|..++.++..++.++.....+|..++.++..+..
T Consensus 959 ~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~ 1004 (1184)
T 1i84_S 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004 (1184)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555544
No 66
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=34.70 E-value=1.8e+02 Score=25.94 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=33.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHH
Q psy9560 52 KKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDL 112 (503)
Q Consensus 52 KKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEk 112 (503)
-.+.||.+||+.|= +.+....+.-+..-+--|+..+..-- ++..-..+|+|+++..
T Consensus 29 ~~~plTEERRKeLV----K~akk~aEeaKVAIRNIRRDAnd~lK-Kl~KdkeISEDe~kr~ 84 (121)
T 3lf9_A 29 TGGGGTEERRKDLV----KIVRGEAEGGRVAVRNIARDAANDLA-ALGKDKEVNWFDISQA 84 (121)
T ss_dssp CSSBCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGCTTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH-HhhhcCCCCHHHHHhH
Confidence 47899999988654 44555555555556666666665433 2322234788776443
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.48 E-value=90 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhHHHHHhh---hhhhHHHHHHHHHHhhC
Q psy9560 119 RIYNLEAIKYELDREIML---KDFEITELGKQVNDLRG 153 (503)
Q Consensus 119 RIdkLEEEKYDLE~KVkK---QDyEInELniKVnDLRG 153 (503)
++..+|.+++|++.++++ --.||++|+.||.+|-+
T Consensus 3 KL~~~Ekd~~~~ee~~~~~E~L~qEi~~Lr~kv~elEn 40 (81)
T 3qh9_A 3 KLVGMEKEQREQEEKQRKAEELLQELRHLKIKVEELEN 40 (81)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888887774 55799999999999965
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.10 E-value=52 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 118 QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 118 dRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
++|..|+..--+|+........+|+.|+..|..|++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766666777666666777777777766665
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.93 E-value=80 Score=25.32 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHH
Q psy9560 138 DFEITELGKQVND 150 (503)
Q Consensus 138 DyEInELniKVnD 150 (503)
..+|..|...++.
T Consensus 56 r~~i~~L~~El~~ 68 (70)
T 1gd2_E 56 RQKVRQLEEELRI 68 (70)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 70
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.26 E-value=2e+02 Score=29.94 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhh---ccCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhcCCC
Q psy9560 27 LKLEELERKRAEVRRRMEEASGAR---RKKGFMTPERKKKLRLLLRKKAAEELK-----REQERRALERKRVIDERCGEP 98 (503)
Q Consensus 27 RKqeErERKkAEvRKRlEEA~KkK---AKKgKMT~eRKkkLKSLLLqKAaEELE-----KEKEqKeEEKKKiLAERcpPP 98 (503)
|-|.-.....-.++.|+++-...- .+..+-+..==..|+.+|.++-++... .+-...-+.|..||.+++ -
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V--~ 130 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV--I 130 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCcccccccc
Q psy9560 99 KDTDDMAEDEIGDLCQEYWQRIYNLEAI------------KYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKY 166 (503)
Q Consensus 99 LnIDGLSedELQEkCKELHdRIdkLEEE------------KYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkS 166 (503)
-+|- +..-||..++.++-+|.+||.+ .--|+++|...+|+-.+=. +..+..+---|.+++=.+.
T Consensus 131 ~q~~--~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQ--L~qv~a~~llP~~~~q~lp 206 (390)
T 1deq_A 131 EQVQ--RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQ--LEQVIAINLLPSRDIQYLP 206 (390)
T ss_pred HHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHH--HHhhhhhcccccccccccc
Q ss_pred HHHHHHHHhhhhccchhhhccc
Q psy9560 167 ENKFAKLQKKAAEFNFRSQLKA 188 (503)
Q Consensus 167 Anm~a~L~KhkvsmDfRANLKq 188 (503)
.=++.-|.-. +--+||++|..
T Consensus 207 ~LK~~p~kd~-vP~~fKsq~q~ 227 (390)
T 1deq_A 207 ILKMSTITGP-VPREFKSQLQE 227 (390)
T ss_pred cccccccccc-CChhhcccccc
No 71
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=33.16 E-value=1.1e+02 Score=25.79 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHH
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQV 148 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKV 148 (503)
|..-+..+..+|..++.+.-++...+......|..+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (284)
T 1c1g_A 81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333333333333
No 72
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=33.13 E-value=45 Score=28.49 Aligned_cols=16 Identities=19% Similarity=-0.026 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhhHHH
Q psy9560 117 WQRIYNLEAIKYELDR 132 (503)
Q Consensus 117 HdRIdkLEEEKYDLE~ 132 (503)
-+.|.+|=-|||-+|.
T Consensus 58 NDEINkL~rEK~~WE~ 73 (92)
T 1x4t_A 58 NDEINKLLREKGHWEV 73 (92)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.09 E-value=1.1e+02 Score=24.59 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
++.+....|-.++..|+.+-=+|+.++.....++++|..++..+.+
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666777888999999999999999999999999999888877655
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.93 E-value=58 Score=29.04 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q psy9560 113 CQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150 (503)
Q Consensus 113 CKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnD 150 (503)
.++|-..|..|...--|.+..|.+...++.+|+.||.|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44444444444444445555555555555555555544
No 75
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=32.28 E-value=35 Score=33.11 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccH
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE 167 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSA 167 (503)
..-+.++-+||..||+---.|......+.+.|..|..++.||-...++-.|+=+.+.+
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPE 62 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPE 62 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCC
Confidence 3445556678888887777888888888889999999999998888999998877766
No 76
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=32.05 E-value=2.1e+02 Score=26.54 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGD 111 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQE 111 (503)
..||.+||+.|- +.++...++-+..-+--|+.++..-- +.. ++|+|+++.
T Consensus 105 P~lTeErRkelv----K~~k~~~E~aKvaiRniRrda~~~lK-k~~---kiseD~~k~ 154 (184)
T 1ge9_A 105 PPLTEERRRELV----RLLHKITEEARVRVRNVRREAKEMIE-ELE---GISEDEKKR 154 (184)
T ss_dssp CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HST---TCCHHHHHH
T ss_pred CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---CCChhHHHH
Confidence 468999988754 44555555555666777777776544 332 378877644
No 77
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.69 E-value=36 Score=30.44 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhh------hhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 109 IGDLCQEYWQRIYNLEAI------KYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEE------KYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
|+.=.+.||++||.+--. |=|- ..+.+...||+.|+.+|+.|+|
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~-~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAA-DKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCT-THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455557788888876422 2222 3466778899999999999998
No 78
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=31.21 E-value=11 Score=35.08 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=25.2
Q ss_pred HHHHHHHHH-hhhhcCCCCCCCCCCH--HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCC
Q psy9560 82 RRALERKRV-IDERCGEPKDTDDMAE--DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFV 156 (503)
Q Consensus 82 qKeEEKKKi-LAERcpPPLnIDGLSe--dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFK 156 (503)
+...+|.|+ +...|. ..++.+|-. .+|-+-...||.||..||..-|.-...+... |-...+++-|+.-|.
T Consensus 96 qa~~ek~rl~l~~~~~-~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~~~~~~----nPV~~ql~~L~~AF~ 168 (169)
T 3ctw_B 96 AACAEAYRLAEEAPAD-GPAVEELPFGLMNLLQRSERLYERVRHLDRRMYVESPNEEAP----RPVQNQLDRLTAAFG 168 (169)
T ss_dssp TTSSSCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------------------------
T ss_pred HHhhhhhhcCCCCCCC-chhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC----CcHHHHHHHHHHHhc
Confidence 333445333 344452 234565543 3455556789999999999988422221111 566667777776664
No 79
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=30.56 E-value=1.1e+02 Score=30.01 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH-Hh-----h---hhhhHHHHHhhhh---hhHHHHHHHHHHhhCCCCCCcc
Q psy9560 103 DMAEDEIGDLCQEYWQRIYN-LE-----A---IKYELDREIMLKD---FEITELGKQVNDLRGKFVRPIL 160 (503)
Q Consensus 103 GLSedELQEkCKELHdRIdk-LE-----E---EKYDLE~KVkKQD---yEInELniKVnDLRGKFKKPaL 160 (503)
||+.+++..++.-|.+.+.. ++ . .--|+-..+.... ..|..|+.+|.+|-.+|--|.|
T Consensus 411 g~~~edi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
T 1rv3_A 411 GLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480 (483)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhccccccchhhHHHHhhccccchhHHHHHHHHHHHHHHHhCCCCCc
Confidence 45588999998888877765 31 1 1123333333222 2688999999999999965543
No 80
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.46 E-value=68 Score=26.61 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q psy9560 105 AEDEIGDLCQEYWQRIYNLE 124 (503)
Q Consensus 105 SedELQEkCKELHdRIdkLE 124 (503)
=+++++.++.+|..+|..|-
T Consensus 10 YE~df~~l~~~i~~kl~~i~ 29 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVP 29 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 36778888888888888765
No 81
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=30.31 E-value=1.3e+02 Score=28.93 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC-CCCccccc
Q psy9560 85 LERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF-VRPILKKV 163 (503)
Q Consensus 85 EEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF-KKPaLKKV 163 (503)
++-+.||.--.- | .|-..+--+..++|-.-+..+-++--||+.++.++..|+++|+.++.-|.|.+ .+=+...+
T Consensus 9 ~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~ 83 (206)
T 3oa7_A 9 EEHEDILNKLLD-P----ELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNI 83 (206)
T ss_dssp HHHHHHHHHHHC-T----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHH
T ss_pred hhHHHHHHHhcC-H----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHH
Confidence 444556664332 1 23445556666777777788888899999999999999999999999999975 33344444
Q ss_pred ccc
Q psy9560 164 SKY 166 (503)
Q Consensus 164 RkS 166 (503)
++|
T Consensus 84 ~ks 86 (206)
T 3oa7_A 84 LQS 86 (206)
T ss_dssp HHH
T ss_pred hhc
Confidence 433
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.02 E-value=88 Score=33.80 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9560 83 RALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI 126 (503)
Q Consensus 83 KeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEE 126 (503)
.-+.+..||.+++. -+|. +..-||..+++++.+|.+||-+
T Consensus 114 ELRRrIqyLKekVd--nQls--nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI--EKVQ--HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677887773 2442 5688999999999999999954
No 83
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.20 E-value=46 Score=37.70 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=8.9
Q ss_pred cchhhhcccccccccch
Q psy9560 180 FNFRSQLKAVKKREFSM 196 (503)
Q Consensus 180 mDfRANLKqVKKEe~~l 196 (503)
-||...+.+++++...+
T Consensus 1019 ~~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555566554333
No 84
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.07 E-value=75 Score=26.69 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
++||..|..|+++. ..+++...++.+|-..|++|
T Consensus 49 ~~Lh~~ie~l~eEi----~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 49 EKLHKEIEQKDNEI----ARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
No 85
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.93 E-value=71 Score=24.48 Aligned_cols=36 Identities=25% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 118 QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 118 dRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
++|..|+.+--+|+..-.....+|..|...++.|++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 86
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.63 E-value=2.5e+02 Score=23.58 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHh
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIM 135 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVk 135 (503)
+.....++-.+|+.|..+.|-|+.-+.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777899999999988876543
No 87
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=28.22 E-value=1.4e+02 Score=27.61 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQ 110 (503)
..||.+||+.|-. .++...+.-+..-+--|+.++..-- +...-..+|+|+++
T Consensus 103 P~lTeErRkelvK----~~k~~~E~aKvaiRniRrda~~~lK-k~~K~~~iseD~~k 154 (185)
T 1wqg_A 103 PQLTEERRRELVK----QAKHKGEEAKVSVRNIRRKAMEELH-RIRKEGEAGEDEVG 154 (185)
T ss_dssp CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCChhHHH
Confidence 4689999887544 4444445444555666666665433 22111236777653
No 88
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=28.16 E-value=91 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHH-------HHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 109 IGDLCQEYWQRIY-------NLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 109 LQEkCKELHdRId-------kLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
+.+++.|+..+|+ .+-.+-|.....|.++.-.|..++..|..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l~ 54 (154)
T 2ynz_A 4 IEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLG 54 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhccc
Confidence 3344444444444 4455688888999999999999988887764
No 89
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=28.04 E-value=1.4e+02 Score=27.57 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQ 110 (503)
..||.+||+.|-. .++...++-+..-+--|+.++..-- +...-..+|+|+++
T Consensus 103 P~lTeErRkelvK----~~k~~~E~aKvaiRniRrda~~~lK-k~~K~~~iseD~~k 154 (185)
T 1is1_A 103 PPLTEERRKDLVK----IVRGEAEGGRVAVRNIRRDANNDLK-ALLKDKEISEDEDR 154 (185)
T ss_dssp CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCChhHHH
Confidence 4689999887544 3444444444555666666655433 22111236776653
No 90
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.81 E-value=1.7e+02 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhh----hhHHHHHHH
Q psy9560 106 EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD----FEITELGKQ 147 (503)
Q Consensus 106 edELQEkCKELHdRIdkLEEEKYDLE~KVkKQD----yEInELniK 147 (503)
.+.|+....+|-+.+.++-.+|=||+...+.+. .+|..|+.+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~ 53 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLR 53 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999988776653 334444444
No 91
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.69 E-value=1.6e+02 Score=24.47 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHh
Q psy9560 138 DFEITELGKQVNDL 151 (503)
Q Consensus 138 DyEInELniKVnDL 151 (503)
..++.-||.||+-|
T Consensus 85 E~ev~~L~Rriqll 98 (101)
T 3u1c_A 85 ESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33677777777654
No 92
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=27.51 E-value=85 Score=26.15 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 103 DMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 103 GLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
.+..++++.++++..+. .|.+..||-+.--.-...=++.++.+|.+|.
T Consensus 12 ~f~~~~v~~ii~~~l~~--~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~l~ 59 (114)
T 1xdx_A 12 AFVADDVSNIIKESIDA--VLQNQQYSEAKVSQWTSSCLEHCIKRLTALN 59 (114)
T ss_dssp SCCCHHHHHHHHHHHHH--HHHSSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH--hhCCCCcCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35678999999987774 5778889987655555555666777777773
No 93
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.49 E-value=1.2e+02 Score=24.04 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhh
Q psy9560 114 QEYWQRIYNLEAIK 127 (503)
Q Consensus 114 KELHdRIdkLEEEK 127 (503)
..|..+|..|+++-
T Consensus 44 ~~L~kKiq~lE~el 57 (81)
T 1ic2_A 44 VALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 94
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.21 E-value=1.1e+02 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy9560 104 MAEDEIGDLCQEYWQRIYNLEAIKYELDREI 134 (503)
Q Consensus 104 LSedELQEkCKELHdRIdkLEEEKYDLE~KV 134 (503)
|+.+.|+.-+..|+.++.+|+.+--.+..++
T Consensus 1 ~~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 1 MEKSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888887777766655433
No 95
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=27.11 E-value=1.1e+02 Score=26.11 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccH-HHHHHHHhhh-----hccch
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE-NKFAKLQKKA-----AEFNF 182 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSA-nm~a~L~Khk-----vsmDf 182 (503)
......+|..+|+.+--++--|+..+....-.+.+++.|..+-.. .|.+. +-|..|+|-- ..+||
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~---------~r~~~E~di~~lrK~lD~~~l~r~dL 88 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML---------QREEAENTLQSFRQDVDNASLARLDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 344567888888888888888888777777777777777655332 12333 4455554321 45777
Q ss_pred hhhccccccc
Q psy9560 183 RSQLKAVKKR 192 (503)
Q Consensus 183 RANLKqVKKE 192 (503)
-+++.+++.|
T Consensus 89 E~~iesL~eE 98 (119)
T 3ol1_A 89 ERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 96
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=26.90 E-value=2.2e+02 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy9560 72 AAEELKREQERRALERKRVIDER 94 (503)
Q Consensus 72 AaEELEKEKEqKeEEKKKiLAER 94 (503)
+.+.|....+...+.|+.+|+..
T Consensus 95 aeEkL~~KME~~kEnReA~laal 117 (143)
T 3ryc_E 95 AKEKLAQKMESNKENREAHLAAM 117 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 44556666666666666666643
No 97
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.85 E-value=84 Score=22.99 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEI 141 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEI 141 (503)
++|-+++..|..++++|+..|.+....+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566777777788888888887765443
No 98
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.77 E-value=1.4e+02 Score=28.02 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhh
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLR 152 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLR 152 (503)
..|+..|..|+.+|..||=.-=|||-..+-...-|.||..|.|.+-
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5788999999999999999999999998888888888888887753
No 99
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.62 E-value=78 Score=29.11 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 118 QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 118 dRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+-|..|+.||-.+..+++++...+.+|-.+...++.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888777666544
No 100
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.56 E-value=76 Score=26.94 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=23.0
Q ss_pred hhhh-hHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 125 AIKY-ELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 125 EEKY-DLE~KVkKQDyEInELniKVnDLRG 153 (503)
..+. |+|.||..|-.||+.++++|.+|--
T Consensus 35 ~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~ 64 (92)
T 3vp9_A 35 LQNQKDYDFKMNQQLAEMQQIRNTVYEREL 64 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7888888888888888888888854
No 101
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.53 E-value=2.9e+02 Score=25.02 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 79 EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 79 EKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
+++..-+++-++|.+++ + ..+. --+.-...|..|-..|+.|+++-|.-..+.+.... +|.+-+++|.+
T Consensus 70 qrEd~yEeqIk~L~~kL-K--EAE~-RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~---eLd~tl~el~~ 137 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKL-K--EAET-RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE---EMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHH-H--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-H--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 44555566666666555 1 1110 11223446667777777777666655444444433 33344445444
No 102
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=26.39 E-value=2e+02 Score=27.36 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDL 112 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEk 112 (503)
..||.+||+.|- +.++...++-+..-+--|+.++..-- +...-..+|+|+++..
T Consensus 127 P~LTeErRkelv----K~ak~~~E~aKvaIRniRrda~~~lK-k~~K~~~isEDe~k~~ 180 (209)
T 4gfq_A 127 PALTEERRRDLV----KVVKKYAEEAKVAVRNVRRDGNDDLK-KLEKAGEITEDDLRGY 180 (209)
T ss_dssp CBCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSSCHHHHHHH
T ss_pred CCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCHHHHHHH
Confidence 468999988654 44555555555555666666655432 2222234677765433
No 103
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.84 E-value=82 Score=32.04 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
.+|+..+++|-..++.|..++-.|...++..+.++..|+.+|..|+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777778888888888777777777777777888888888877764
No 104
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.74 E-value=4.8e+02 Score=25.49 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=18.6
Q ss_pred HhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 123 LEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 123 LEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
||-++---+.||+.++.||.+||.++.|++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445666667777777777776654
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.56 E-value=1.5e+02 Score=21.77 Aligned_cols=8 Identities=13% Similarity=0.136 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9560 116 YWQRIYNL 123 (503)
Q Consensus 116 LHdRIdkL 123 (503)
|+..+..+
T Consensus 10 ~~~~~~~~ 17 (60)
T 3htk_A 10 LENQVEEL 17 (60)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 106
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.36 E-value=1.8e+02 Score=30.86 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q psy9560 130 LDREIMLKDFEITELGKQV 148 (503)
Q Consensus 130 LE~KVkKQDyEInELniKV 148 (503)
+..+.+....||++|+.+.
T Consensus 565 ~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445566667777777763
No 107
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.99 E-value=63 Score=26.77 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Q psy9560 103 DMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEIT 142 (503)
Q Consensus 103 GLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEIn 142 (503)
+++..++..+|-+.|..|..-|=..|.-.+...+..|+..
T Consensus 38 ~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e 77 (108)
T 1v64_A 38 DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 77 (108)
T ss_dssp TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999988888888888887777766543
No 108
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.98 E-value=47 Score=27.14 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Q psy9560 100 DTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFE 140 (503)
Q Consensus 100 nIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyE 140 (503)
++.+++..++-.+|-++|..|..-|=..|.-.+...+..|+
T Consensus 28 ~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 68 (101)
T 1v63_A 28 ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYK 68 (101)
T ss_dssp TTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888777777777766666555554
No 109
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.89 E-value=1.2e+02 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
+|++.-..|.+....+.+.|-.|.....+...|++.-..||+-|=|||
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334433344444444444444455555555556666666666666653
No 110
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.86 E-value=1.9e+02 Score=23.71 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHh
Q psy9560 137 KDFEITELGKQVNDL 151 (503)
Q Consensus 137 QDyEInELniKVnDL 151 (503)
...++.-||.||+-|
T Consensus 84 AE~evasLnRriqll 98 (101)
T 3u59_A 84 AEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344677788877654
No 111
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=24.16 E-value=1.4e+02 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF 155 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF 155 (503)
+.|+..|+.-=..|+..+-++...+.-.-.+||.|-.+|.+|..+.
T Consensus 74 ~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI 119 (463)
T 2d4y_A 74 EGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQI 119 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777778888889999888888888888888888877644
No 112
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.91 E-value=36 Score=28.41 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q psy9560 105 AEDEIGDLCQEYWQRIYNLE 124 (503)
Q Consensus 105 SedELQEkCKELHdRIdkLE 124 (503)
...+|++.|.+|-+.|.-|+
T Consensus 37 ~~~El~~~l~el~e~l~DL~ 56 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLD 56 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44667777776666665444
No 113
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=23.80 E-value=1.5e+02 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQ 110 (503)
..||.+||+.|-. .++...++-+..-+--|+.++..-- +...-..+|+|+++
T Consensus 103 P~lTeErRkelvK----~~k~~~E~aKvaiRniRrda~~~lK-k~~K~~~iseD~~k 154 (185)
T 1dd5_A 103 PSPTTEQREKWVK----KAKEIVEEGKIAIRNIRREILKKIK-EDQKEGLIPEDDAK 154 (185)
T ss_dssp CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCChhHHH
Confidence 4689999887544 3444444444555555666554333 21111235666653
No 114
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=23.62 E-value=1.5e+02 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHH
Q psy9560 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110 (503)
Q Consensus 54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQ 110 (503)
..||.+||+.|-. .++...++-+..-+--|+.++..-- +...-..+|+|+++
T Consensus 103 P~lTeErRkelvK----~~k~~~E~aKvaiRniRrda~~~lK-k~~K~~~iseD~~k 154 (185)
T 1ise_A 103 PPLTEERRKDLTK----IVRGEAEQARVAVRNVGRDANDKVK-ALLKDKEISEDDDR 154 (185)
T ss_dssp CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSSSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCChhHHH
Confidence 3689999887544 3444444444555556666554333 21111235666653
No 115
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.57 E-value=62 Score=27.62 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHHHHHH---hhhhccch
Q psy9560 107 DEIGDLCQEYW-QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQ---KKAAEFNF 182 (503)
Q Consensus 107 dELQEkCKELH-dRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~a~L~---KhkvsmDf 182 (503)
|.++++|++|. +.|. .+.+.-.....+.+.-.+|+ .-|+++-|...+ .|-+++..|. |.+.+-||
T Consensus 10 D~vRdk~~e~L~~aL~-~~~~~~~~~~~~~~~A~~IE---~~~f~~~~~~~~-------~Yk~k~Rsl~~NLkd~~Np~L 78 (113)
T 2lw4_A 10 DAVRNKCREMLTAALQ-TDHDHVAIGADCERLSAQIE---ECIFRDVGNTDM-------KYKNRVRSRISNLKDAKNPDL 78 (113)
T ss_dssp STTHHHHHHHHHHHHH-SSTHHHHHTCCHHHHHHHHH---HHHHHHHTCTTT-------HHHHHHHHHHHHHHCSSSSHH
T ss_pred cHHHHHHHHHHHHHHH-cCCCcccccchHHHHHHHHH---HHHHHHcCCCcH-------HHHHHHHHHHHHcCCCCCHHH
Confidence 67899999874 3443 22221111111222222333 356665554433 4556666553 55567888
Q ss_pred hhhcc
Q psy9560 183 RSQLK 187 (503)
Q Consensus 183 RANLK 187 (503)
|.+|-
T Consensus 79 r~~vl 83 (113)
T 2lw4_A 79 RRNVL 83 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 116
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=23.54 E-value=1.2e+02 Score=24.76 Aligned_cols=39 Identities=8% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 115 EYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 115 ELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
++.++|..++....+||.+|......|++-+.+-+.+++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~ 42 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRS 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888777777776666555544
No 117
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.33 E-value=70 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHH
Q psy9560 109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGK 146 (503)
Q Consensus 109 LQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELni 146 (503)
=+....+++.++..|+.+...|..+|.....||..|+.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777776666555455544443
No 118
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.24 E-value=65 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy9560 107 DEIGDLCQEYWQRIYNLEA 125 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEE 125 (503)
-.|+.+.++|..++|.||+
T Consensus 9 r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999885
No 119
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.14 E-value=47 Score=27.98 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 116 YWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 116 LHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
-|.++.+|+.++-++..+ |..|+.+|..|++
T Consensus 5 ~~~~~~~l~~~~~~l~~~-------i~~lkeel~~L~~ 35 (109)
T 2wg5_A 5 HHHRMKQLEDKVEELLSK-------NYHLENEVARLRS 35 (109)
T ss_dssp ----CHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhC
Confidence 356677777666666544 4455555555554
No 120
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.02 E-value=83 Score=28.90 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCC
Q psy9560 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGK 154 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGK 154 (503)
.|+.-|..|-.+|..|+++--.-..-+....-|+..|+++++-+.+|
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443333333444556677778887777774
No 121
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.82 E-value=2.3e+02 Score=20.79 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=8.6
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q psy9560 131 DREIMLKDFEITELGKQVN 149 (503)
Q Consensus 131 E~KVkKQDyEInELniKVn 149 (503)
...|+...-+|..|+.+|.
T Consensus 39 ~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 39 FEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444443
No 122
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.81 E-value=65 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhh
Q psy9560 115 EYWQRIYNLEAIKYELDREIMLK 137 (503)
Q Consensus 115 ELHdRIdkLEEEKYDLE~KVkKQ 137 (503)
+|-++|..|-.++|+|+..|.+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44445555555566666555543
No 123
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=22.75 E-value=1.2e+02 Score=26.94 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
..|+..|++|...| |=+++|+.-..++...-.+++|..+|+.+=+
T Consensus 63 e~L~~~C~~~lk~i--iG~e~~~eLk~m~~sg~~~e~l~~Kv~e~i~ 107 (134)
T 2xv9_A 63 EHLKGGCREILKHV--VGEEKAAELKNLKDSGASKEELKAKVEEALH 107 (134)
T ss_dssp HHHHHHHHHHHHHH--THHHHHHHHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--hhHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45888999988775 5577888888888888889999999999866
No 124
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.61 E-value=1.8e+02 Score=23.56 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
..|+.++..++.-|+.=..--=+|+.+|-+.+..|...+.|+..|
T Consensus 40 ~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 40 GNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444333333344444444444454444444443
No 125
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=22.47 E-value=95 Score=29.14 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 104 MAEDEIGDLCQEY-WQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 104 LSedELQEkCKEL-HdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
++.+++++++..- .+++..|+..+=.|+.++.+.+.-|..|...+..+.|
T Consensus 61 ~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 61 FPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp CCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444321 1233344444444555555555666777777777776
No 126
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.18 E-value=76 Score=26.40 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9560 108 EIGDLCQEYWQRIYNLE 124 (503)
Q Consensus 108 ELQEkCKELHdRIdkLE 124 (503)
+=+.+|+++...|+..+
T Consensus 46 ~rk~~i~~ie~~ldEA~ 62 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEAN 62 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 127
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.09 E-value=1.7e+02 Score=31.74 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=7.2
Q ss_pred HHHHhhCCCCCCccccc
Q psy9560 147 QVNDLRGKFVRPILKKV 163 (503)
Q Consensus 147 KVnDLRGKFKKPaLKKV 163 (503)
||..-||--.|=.-++|
T Consensus 157 qirsCKgsCsr~~~~~v 173 (562)
T 3ghg_A 157 KIRSCRGSCSRALAREV 173 (562)
T ss_dssp HHHHGGGTBSCCCCCCC
T ss_pred HHHhccccccchheeec
Confidence 33334444444444444
No 128
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.55 E-value=94 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=15.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 130 LDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 130 LE~KVkKQDyEInELniKVnDLRG 153 (503)
||.||...-.++.+|...|..|++
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666666666666666666654
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.33 E-value=1.2e+02 Score=30.47 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh
Q psy9560 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 114 KELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL 151 (503)
.+|...|..|+.++-.|+..++....++.+|+.++.+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666665443
No 130
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=21.06 E-value=1.1e+02 Score=25.21 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=43.4
Q ss_pred ChhhhhHHhhccccCCCCccHHHHHHHHHHhhhcCchhhHHHHHHHHHhhhhccccccCC
Q psy9560 282 NPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341 (503)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
+.|++-.||. .-|++..|||.|+-+-....-..-++.++-+.||+..-+.-|-+|
T Consensus 11 TEe~VrryL~-----rkPmTt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki~p~q~~~~g 65 (73)
T 1i27_A 11 TEDAVRRYLT-----RKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMIND 65 (73)
T ss_dssp CHHHHHHHHH-----HSCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHHCCEEEEETT
T ss_pred CHHHHHHHHH-----cCCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHHhhccCC
Confidence 4589999998 469999999999988876666677889999999987665555333
No 131
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.83 E-value=89 Score=25.30 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=24.9
Q ss_pred HHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 122 NLEAIKYELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 122 kLEEEKYDLE~KVkKQDyEInELniKVnDLRG 153 (503)
.|++---|||.|+..++.-|.+||.-|...+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~ 42 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARL 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444457888999999999999998887766
No 132
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.79 E-value=1.8e+02 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=10.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHh
Q psy9560 131 DREIMLKDFEITELGKQVNDL 151 (503)
Q Consensus 131 E~KVkKQDyEInELniKVnDL 151 (503)
|..+...+-+...|+.+|.++
T Consensus 43 E~l~q~~e~e~~~l~~~I~~I 63 (75)
T 3mtu_A 43 ELICQENEGENDPVLQRIVDI 63 (75)
T ss_dssp HHHHHHTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 333444444455666666654
No 133
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=20.75 E-value=94 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH---------HHHhhhhhhHHHHHHHHHHhhC
Q psy9560 110 GDLCQEYWQRIYNLEAIKYELD---------REIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 110 QEkCKELHdRIdkLEEEKYDLE---------~KVkKQDyEInELniKVnDLRG 153 (503)
..+.+.|+..|..||+.--||+ .++.+-++-+.++-.|+.+|+|
T Consensus 15 e~~l~~~~k~Ik~LEe~Evd~d~ld~~dS~Yi~~~rlKkr~~~iy~KlCeL~g 67 (212)
T 4h9n_C 15 EQLLALYVAEIRRLQEKELDLSELDDPDSAYLQEARLKRKLIRLFGRLCELKD 67 (212)
T ss_dssp HHHHHHHHHHHHHHHTCEECTTGGGCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3344555577777766654444 2344444447777777777777
No 134
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=20.65 E-value=4.7e+02 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=15.5
Q ss_pred HHHHHHHhhCCCCCCccccccccHHHHHHHHhhhhccc
Q psy9560 144 LGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFN 181 (503)
Q Consensus 144 LniKVnDLRGKFKKPaLKKVRkSAnm~a~L~KhkvsmD 181 (503)
|-..+++.+||+.| -+.+-|+.|.|++.+.|
T Consensus 351 IA~~lkn~KGKkIR-------nvdDAL~sfeKyk~nln 381 (511)
T 1rh1_A 351 IAENINNFQGKTIR-------SYDDAMSSINKLMANPS 381 (511)
T ss_dssp HHHHHHHCTTCCCC-------CHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhccCceec-------CHHHHHHHHHHHHhchh
Confidence 33456677775544 33333455555544333
No 135
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.47 E-value=2.5e+02 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=15.1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560 129 ELDREIMLKDFEITELGKQVNDLRG 153 (503)
Q Consensus 129 DLE~KVkKQDyEInELniKVnDLRG 153 (503)
|||.+++..+.-+.+|..||+-|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555666666666666543
No 136
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.31 E-value=1.7e+02 Score=23.82 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9560 108 EIGDLCQEYWQRIYNLEAI 126 (503)
Q Consensus 108 ELQEkCKELHdRIdkLEEE 126 (503)
++..+++.++.+|..|+.+
T Consensus 58 ~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 58 DIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666544
Done!