RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9560
(503 letters)
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 125 bits (317), Expect = 2e-34
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 61 KKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRI 120
K+ L+ LL KAAEEL+ EQ ++ E+++ + ERC + + AE + +LC++ RI
Sbjct: 1 KRHLKSLLLLKAAEELEFEQRKKEEEKEKYLAERCPPLRLSLSRAELQ--ELCKKLHARI 58
Query: 121 YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKL---QKKA 177
L+ +Y+++ ++ KD EI +L K+VNDLRGKF +P LKKV K + K K
Sbjct: 59 DRLDEERYDIEEKVAKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKSADAMLKALLGSKHK 118
Query: 178 AEFNFRSQLKAVK 190
+ R+ LK VK
Sbjct: 119 VSMDLRANLKQVK 131
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 87.3 bits (217), Expect = 5e-18
Identities = 49/176 (27%), Positives = 55/176 (31%), Gaps = 3/176 (1%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
P E PA A PA A PA A A + P AP
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPA---EAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
A + G P G PPA AP GA A+ APAPA PA A+
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ PA P P PP A PP AP +APA
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
Score = 85.8 bits (213), Expect = 1e-17
Identities = 77/311 (24%), Positives = 93/311 (29%), Gaps = 33/311 (10%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
P P P P P S + P P PEP P P+
Sbjct: 433 PAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT-----PQPLLKSVVKDTLR--- 330
P +A+ +++ + T P+ + V DTL
Sbjct: 493 APAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGF 552
Query: 331 ------------------RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGA 372
A EE GG+ + E A P A PA
Sbjct: 553 STGGLARRFASPGNAEVLVTALAEEL-GGDWQVE----AVVGPAPGAAGGEGPPAPASSG 607
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
PP E A PA A PA A PA AA APA + P P AP A +
Sbjct: 608 PPEEAARPAAPAAPAAPAAPAPAGAAA--APAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G PA+ A PA P A PA A A PA+ APAP A D P
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725
Query: 493 AEAPPAESAPA 503
A A
Sbjct: 726 QGASAPSPAAD 736
Score = 83.5 bits (207), Expect = 8e-17
Identities = 43/176 (24%), Positives = 48/176 (27%), Gaps = 2/176 (1%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
A P APA G E P P A A AP A
Sbjct: 623 APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682
Query: 390 APPAEGAPA--AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
PA APA A APA PA P A A+ P A + P
Sbjct: 683 PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P A PP A A PP+ E +AP +
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
Score = 80.4 bits (199), Expect = 6e-16
Identities = 51/145 (35%), Positives = 54/145 (37%), Gaps = 2/145 (1%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
A E A A GA A P+ A A APAP A P A P
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A AP PA APA AP G +P AP A+ APAP A P AP
Sbjct: 426 AAAPQPAP-APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
Query: 479 APPADAPPAEPAPPAEAPPAESAPA 503
P A AP A PA PA A
Sbjct: 485 -PAAPAPAAAPAAPAAPAAPAGADD 508
Score = 80.4 bits (199), Expect = 7e-16
Identities = 56/137 (40%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
PA AP A A PA PA APAA APAP A P PA PA
Sbjct: 380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA-PQPAPAPAPA 438
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
APP G A GAP+P AP A+ AP AP APAP APAP A APA
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPA-AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA--APA 495
Query: 480 PPADAPPAEPAPPAEAP 496
PA A A
Sbjct: 496 APAAPAAPAGADDAATL 512
Score = 80.0 bits (198), Expect = 1e-15
Identities = 60/148 (40%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
A E A A GA A P+ A APA A A P P
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
A PA AP PA AP + APA GAP+PP AP A+ AP AP P A APAP
Sbjct: 426 AAAPQPAPAPAPAP-APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAES 500
PA APA A PA PA PA A A +
Sbjct: 485 PAAPAPAAAP-AAPAAPAAPAGADDAAT 511
Score = 78.5 bits (194), Expect = 3e-15
Identities = 49/135 (36%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 348 EAPADGAPPA-EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
E A PA AP A A PA PA AP A AP AP APAP
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG-APRAEGAPPAEGAPAPP 465
PP G PA P A A PAPA A P AP AP APA P
Sbjct: 439 PA-PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497
Query: 466 AEGAPAPPAEGAPAP 480
A A A+ A
Sbjct: 498 AAPAAPAGADDAATL 512
Score = 67.7 bits (166), Expect = 7e-12
Identities = 49/161 (30%), Positives = 56/161 (34%), Gaps = 3/161 (1%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE-GAPPAEG 389
A PK A A AP A PA AP A GA PA+
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGA--PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
AP P A A P A+ P A+GA P A P P + P PA PP
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
AP AP A P+PP+E + D AE
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
Score = 64.6 bits (158), Expect = 6e-11
Identities = 54/237 (22%), Positives = 67/237 (28%), Gaps = 22/237 (9%)
Query: 236 VEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVS 295
V EG P PP P P P P+P
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAA----------- 635
Query: 296 ASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAP 355
+ + P +V + + G P APA AP
Sbjct: 636 -----PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP 690
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE- 414
A GA PA+ AP PPA A PP A+ +PA P P E
Sbjct: 691 AA-----PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
PP A PA+ P APA A A PP+ + E A +
Sbjct: 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
Score = 63.9 bits (156), Expect = 1e-10
Identities = 36/111 (32%), Positives = 38/111 (34%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
APA AP A AP AP AP APP+ G P+ AA
Sbjct: 403 AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
A PA P A PA APP A AA APA R
Sbjct: 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
Score = 51.5 bits (124), Expect = 8e-07
Identities = 28/100 (28%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEG 395
P AP AP APP+ G P AP A+ AP
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
AP APAP P AP A A P A
Sbjct: 473 APEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
Score = 48.8 bits (117), Expect = 5e-06
Identities = 45/255 (17%), Positives = 53/255 (20%), Gaps = 44/255 (17%)
Query: 198 DAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVP 257
A E P S P A A+ G P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG--AAAAPAEASAAPAPGV 647
Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
PE P+ +A +A P
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGG-------------------------AAPAAPP 682
Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEG 377
P G APA AP PPA A PP
Sbjct: 683 PA-----------------PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+ +P A+ P P PA PPP PA AP A
Sbjct: 726 QGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
Query: 438 AEGAPAPPAEGAPRA 452
AE + R
Sbjct: 786 AEDDAPSMDDEDRRD 800
Score = 48.1 bits (115), Expect = 9e-06
Identities = 23/100 (23%), Positives = 25/100 (25%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
A+ PA PA P G PA GAP A P A
Sbjct: 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
E A AP AP A+ A
Sbjct: 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
Score = 45.7 bits (109), Expect = 5e-05
Identities = 33/231 (14%), Positives = 47/231 (20%), Gaps = 9/231 (3%)
Query: 204 KPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPE 263
+ E V P P +A+ P P P P
Sbjct: 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAA-------RPAAPAAPAAPAAPAPAGAAAA 635
Query: 264 PEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKS 323
P P +P D + A +
Sbjct: 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695
Query: 324 VVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP--PA 381
+ G P + P + +P A+ P P P
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
PP PA AA P E + AP + + A
Sbjct: 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAM 806
Score = 29.2 bits (66), Expect = 6.5
Identities = 28/165 (16%), Positives = 36/165 (21%), Gaps = 46/165 (27%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
P + + A+ P P+P P P PP+P
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
Query: 281 PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEG 340
+A P
Sbjct: 450 AGGAP------------------------SPPPAAAPSA--------------------- 464
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
+P P A + APPA AP A A PA A PA
Sbjct: 465 -QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 81.5 bits (201), Expect = 4e-16
Identities = 66/295 (22%), Positives = 85/295 (28%), Gaps = 20/295 (6%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P + + +P P P P P S P P + P P P +
Sbjct: 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD 2620
Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
P P +P+P + P D + + +
Sbjct: 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD----------------PAPGRVSRP 2664
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
R+A P A P G+ + PP P A P
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724
Query: 391 PPAEG--APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P A +PA APAPPA P P A P A APAP A P
Sbjct: 2725 PAAARQASPALPAAPAPPA--VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
R A +E + P+ PA P AP A PPA PP + P
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837
Score = 74.6 bits (183), Expect = 6e-14
Identities = 76/294 (25%), Positives = 92/294 (31%), Gaps = 20/294 (6%)
Query: 223 PEPEPESATDASDVEDGKETPLP-PEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
P+ P+SA + V+D + P P PP P PP P P P E P PP V P
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
Query: 282 NPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341
VS + S + + V
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708
Query: 342 EPKPEGEAPADGAPPAEGA--------PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
EP P A PP A P A P P G P PP PPA
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP----------- 442
PAA A P P + P+ PA A A A
Sbjct: 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
PP P A PP P+ P G+ AP + PP+ +P A+PA PA P
Sbjct: 2829 PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882
Score = 65.0 bits (158), Expect = 6e-11
Identities = 61/255 (23%), Positives = 74/255 (29%), Gaps = 31/255 (12%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
PPPP P PEP P TP P A+ + L A A
Sbjct: 2701 PPPPPPTPEPA-----PHALVSATPLP---------PGPAAARQASPAL-----PAAPAP 2741
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
P R A T G APA G P P + + P+
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
P A P A +PA P P A+ P P P + G+ A
Sbjct: 2802 WDP----ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
Query: 437 P----AEGAPAPPAEGAPRAEGAPP----AEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
P P+ P A PP A A + E PP + P APP
Sbjct: 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917
Query: 489 PAPPAEAPPAESAPA 503
P PP + P
Sbjct: 2918 QPQPQPPPPPQPQPP 2932
Score = 62.6 bits (152), Expect = 3e-10
Identities = 70/296 (23%), Positives = 93/296 (31%), Gaps = 16/296 (5%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
P P PEP P + A+ + G P P + P PP P P P P
Sbjct: 2704 PPPTPEPAPHALVSATPLPPG---PAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
T + V L + + P P + + A+
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
Query: 339 E----GGEPKPEGEAPADGAPPAEGAPPAE--GAPPAEGAPPAEGAPPAEGA--PPAEGA 390
G P P P PP PP+ G A G P A P A
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
PP + + + PP + P + P P + P P + P PP P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ-PPPPPQPQPPPPPPPRP 2939
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP----AEPAPPAEAPPAESAP 502
+ AP + A A GA P GA P A P +PAP EAP + + P
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995
Score = 53.8 bits (129), Expect = 2e-07
Identities = 66/280 (23%), Positives = 85/280 (30%), Gaps = 19/280 (6%)
Query: 242 TPLPPEGEQPPVEEVPPPPEPEP-----EPPVEEIPPTPPSPVTPNPEELWLYLKDTVSA 296
P P G P + P P P EP E + P + + E D
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPP 2554
Query: 297 SNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPP 356
P + ++ + P+P +V R A + P + P APP
Sbjct: 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP 2614
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP----AEGPPP 412
+ P P +P P PP P A G + P G
Sbjct: 2615 SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA 2674
Query: 413 AEGAPPA----EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA-----PA 463
+PP A P G+ + P P P P A PP A PA
Sbjct: 2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PA AP G P A PA P A PPA + PA
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTA-GPPAPAPPA 2773
Score = 51.5 bits (123), Expect = 9e-07
Identities = 59/275 (21%), Positives = 81/275 (29%), Gaps = 24/275 (8%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS- 277
P P P + T P PP PP P V + + S
Sbjct: 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
Query: 278 PVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEE 337
P +P + + +A P + ++ T P +L
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL-------- 2850
Query: 338 TEGGEPKPEGEA---PADGAPPAEGAPPAE------GAPPAEGAPPAEGAPPAEGAPPAE 388
GG P G+ P +P A+ A PA P + + PP + P +
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ 2910
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE---GAPAPAEGAPAPP 445
P P + P P + PPP P P + A A E P P GA P
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
PR PA AP + PP G
Sbjct: 2971 RVAVPRFRVPQPAPSREAP---ASSTPPLTGHSLS 3002
Score = 46.9 bits (111), Expect = 3e-05
Identities = 48/247 (19%), Positives = 68/247 (27%), Gaps = 16/247 (6%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP-PPEPEPEPPVE 269
P P P AS E + P P + PP + P P P
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
Query: 270 EIPPTP-----PSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSV 324
+PP P P P L L +V+ V + +A +P ++ +
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886
Query: 325 VKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 384
+ + R + P P + P P + PP + PP
Sbjct: 2887 ARPAVSRS----------TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
P + PA G P+ P P A P A APA P
Sbjct: 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996
Query: 445 PAEGAPR 451
R
Sbjct: 2997 TGHSLSR 3003
Score = 45.7 bits (108), Expect = 5e-05
Identities = 39/167 (23%), Positives = 45/167 (26%), Gaps = 12/167 (7%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAE---GAPPAEGAPP---------AEGAPPAEGA 396
A P G PP APPA P E P E A G
Sbjct: 2491 AAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGD 2550
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
P PA P P + P P + P + P A R +
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PA +P PP AP PP + P P PA
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
Score = 40.7 bits (95), Expect = 0.002
Identities = 52/242 (21%), Positives = 63/242 (26%), Gaps = 17/242 (7%)
Query: 235 DVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV-------TPNPEELW 287
P P P PE PP V P
Sbjct: 253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP 312
Query: 288 LYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEG 347
A + DD + M VS P+P + RR+ + E G
Sbjct: 313 PDPPPPAPAGDAEEEDD-EDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAG 371
Query: 348 EAPADGAPPAEG---APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
A + P A G + PA P + P PA AP
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPA--SAPP 429
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
PPA P AE PP E P A AP P + +A A P P
Sbjct: 430 PPATPLPSAEPGSDDGPAPPPERQPPAPATEP----APDDPDDATRKALDALRERRPPEP 485
Query: 465 PA 466
P
Sbjct: 486 PG 487
Score = 40.3 bits (94), Expect = 0.002
Identities = 48/200 (24%), Positives = 55/200 (27%), Gaps = 38/200 (19%)
Query: 338 TEGGEPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEG------ 389
G P PE AP A P +G GAP A APP P G E
Sbjct: 275 ATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334
Query: 390 -------------------------APPAEGAPAAEGAPAPPAEGPPPA--EGAPPAEAP 422
PP+ + G P P A A P
Sbjct: 335 EVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATP 394
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
+ PA A P P APP P P AE +G PP
Sbjct: 395 FARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEP---GSDDGPAPPPE 451
Query: 483 DAPPAEPAPPAEAPPAESAP 502
PPA PA P ++
Sbjct: 452 RQPPAPATEPAPDDPDDATR 471
Score = 39.2 bits (91), Expect = 0.006
Identities = 60/253 (23%), Positives = 75/253 (29%), Gaps = 35/253 (13%)
Query: 241 ETPLPPEGEQPPVEEVPPPPEPEPEPPV-----EEIPPTPPSPVTPNPEELWLYLKDTVS 295
ET G PP E P P V P P+P P P +
Sbjct: 270 ETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPP----------A 319
Query: 296 ASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAP 355
+ +D + M VS P+P + RR+ + E G A
Sbjct: 320 PAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRAS 379
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
+ P A G + PA PA+ PAP P PA
Sbjct: 380 LPTRK---------RRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPT---PVPASA 427
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
PP P P+ + +G PAPP E P A PA P A E
Sbjct: 428 PPPPATPLPSAEPGSDDG--------PAPPPERQPPAPATEPAPDDPDDATRKALDALRE 479
Query: 476 GAPAPPADAPPAE 488
P P A AE
Sbjct: 480 RRPPEPPGADLAE 492
Score = 36.8 bits (85), Expect = 0.029
Identities = 30/81 (37%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P + A PA P EGA A A G P PP AP APP A A
Sbjct: 247 PLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDG---VWGAALA 303
Query: 470 PAPPAEGAPAPPADAPPAEPA 490
AP A AP P PA A
Sbjct: 304 GAPLALPAPPDPPPPAPAGDA 324
Score = 36.1 bits (83), Expect = 0.060
Identities = 43/188 (22%), Positives = 49/188 (26%), Gaps = 36/188 (19%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
P G A PP G P PP E A P A +G G
Sbjct: 247 PLRGDIAAPAPPPVVG--EGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAG 304
Query: 410 PPPAEGAPPAEAPPPAEGAPAAE----------------------GAPAPAEGAPAPPAE 447
P A APP PP G E G P PP+
Sbjct: 305 APLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSS 364
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPA------------EGAPAPPADAPPAEPAPPAEA 495
+ G + A P + A A + PA P A PAP
Sbjct: 365 LEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP 424
Query: 496 PPAESAPA 503
A PA
Sbjct: 425 ASAPPPPA 432
Score = 36.1 bits (83), Expect = 0.060
Identities = 27/115 (23%), Positives = 31/115 (26%), Gaps = 7/115 (6%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
G A P + P P APP P P ++ PAPP E
Sbjct: 397 RGPGGDDQTRPAAPVPASVPTPAPTPV-----PASAPPPPATPLPSAEPGSDDGPAPPPE 451
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
PPA PA P A + P PP G P
Sbjct: 452 RQPPAPATEPAPDDPDDATRKALDA--LRERRPPEPPGADLAELLGRHPDTAGTV 504
Score = 31.1 bits (70), Expect = 1.9
Identities = 32/124 (25%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAP--------PAEAPPPAEGAPAAEGAPAPAEG 440
GAP + E P P P P P PP AP A APA
Sbjct: 2461 GAPFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAIL 2520
Query: 441 APAPPAEGAPR---------AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
P E E A G P PP A P A PP P P
Sbjct: 2521 PDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP 2580
Query: 492 PAEA 495
+
Sbjct: 2581 AVTS 2584
Score = 29.9 bits (67), Expect = 4.6
Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQP-PVEEVPPPPEPEPEP 266
+ P + P +PE + P PP QP P PP P+P P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
Query: 267 PVEEIPPTPPSPVTPNP 283
+ PS P P
Sbjct: 2946 TTDPAGAGEPSGAVPQP 2962
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 77.2 bits (190), Expect = 7e-15
Identities = 57/176 (32%), Positives = 59/176 (33%), Gaps = 8/176 (4%)
Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
LR A GG P A P PA AP A A PA APPA A
Sbjct: 358 LRMLAFRPGQSGGGAGP----ATAAAAPVAQPAPAAAAPAA--AAPAPAAPPAAPAAAPA 411
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
A A AA +P E A A APA APA A A
Sbjct: 412 AAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471
Query: 449 APRAEGAPPAEGAPAPPAEGAP--APPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A A PA APA A PP E P A PA+P AES P
Sbjct: 472 VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
Score = 76.8 bits (189), Expect = 8e-15
Identities = 57/163 (34%), Positives = 59/163 (36%), Gaps = 4/163 (2%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P APA AP A A A A PA +P E A A A A
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP--AEG 460
PAP A P A A P A A AA APA APAP + P E PP A
Sbjct: 452 PAPAA-APAAAARPAAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPEFASP 509
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
APA P AE P P P A AP A AP
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552
Score = 76.5 bits (188), Expect = 1e-14
Identities = 50/147 (34%), Positives = 51/147 (34%), Gaps = 1/147 (0%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
P A P PA AP A PA APAA A A P AP
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
A A A GAPAPA A PA A A P A A A AP A A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA 490
Query: 478 PAPPADAPPAE-PAPPAEAPPAESAPA 503
PA P E P A PA+ A
Sbjct: 491 PADDDPPPWEELPPEFASPAPAQPDAA 517
Score = 74.9 bits (184), Expect = 3e-14
Identities = 47/181 (25%), Positives = 54/181 (29%), Gaps = 9/181 (4%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
A+ A AP A A A A PA +P E A A
Sbjct: 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444
Query: 390 APPAEGAPAAEGAPAP-------PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
APA APA A A PA A P A APA + P E P
Sbjct: 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPP 504
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+ + + AP A + P P P AP A PAP A A
Sbjct: 505 EFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP--APAAAPAPRAAAATEPVVA 562
Query: 503 A 503
Sbjct: 563 P 563
Score = 73.4 bits (180), Expect = 1e-13
Identities = 49/159 (30%), Positives = 55/159 (34%), Gaps = 4/159 (2%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAEG 401
+ APA +P E A A AP AP A A P A
Sbjct: 416 ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
A A PA P A AP + PPP E P +PAPA+ AP AE P A
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG---WVAESIPDPATA 532
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A AP APAP A A P + S
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
Score = 61.4 bits (149), Expect = 6e-10
Identities = 66/254 (25%), Positives = 76/254 (29%), Gaps = 47/254 (18%)
Query: 248 GEQPPVEEVPPPPEPEP----EPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSID 303
G P P +P P P PP+ P +A +
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA-------AAAARAVAAAP 423
Query: 304 DLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPA 363
A++A Q A A G A PA
Sbjct: 424 ARRSPAPEALAAARQ------------------------------ASARGPGGAPAPAPA 453
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA-P 422
A PA A PA A A A PA APAA APA + PPP E PP A P
Sbjct: 454 PAAAPAAAARPA--AAGPRPVAAAAAAAPARAAPAAAPAPAD--DDPPPWEELPPEFASP 509
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
PA+ A G A + PA AP APAP A A P P P A
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP-PRA 568
Query: 483 DAPPAEPAPPAEAP 496
A + P
Sbjct: 569 SASGLPDMFDGDWP 582
Score = 61.4 bits (149), Expect = 6e-10
Identities = 54/236 (22%), Positives = 62/236 (26%), Gaps = 20/236 (8%)
Query: 245 PPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDD 304
P PV P P P PP+ P +
Sbjct: 374 PATAAAAPV--AQPAPAAAAPAAAAPAPAAPPAAPAAAPA--------------AAAAAR 417
Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
V + S P+ L + + P A A A
Sbjct: 418 AVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP-AAAGPRPVAAAA 476
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
A PA AP A AP + PP E PP +PA A PA G PA A P
Sbjct: 477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA-GWVAESIPDPATADPD 535
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
A A AP A P PP A P PA A P
Sbjct: 536 DAFETLAPAPAAAP--APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 38.7 bits (90), Expect = 0.007
Identities = 30/87 (34%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P G A A A A PA AP A PA AP A A A A A PA
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 483 DAPPAEPAPPA------EAPPAESAPA 503
PA A A P APA
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPA 451
Score = 30.6 bits (69), Expect = 2.2
Identities = 39/223 (17%), Positives = 51/223 (22%), Gaps = 28/223 (12%)
Query: 230 ATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPP---SPVTPNPEEL 286
A A+ P P P P P +P +P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 287 WLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPL---LKSVVKDTLRRQASHEETEGGEP 343
L SA P +A +A +P + V A P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
Query: 344 KPEGEAPADGAPPAEGAP-----------------PAEGAPPAEGAPPAEGAPPAEGAPP 386
+ P + PP +P P + A AP
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDA-----FETLAPAPA 546
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
A AP A A AP PP + P A P
Sbjct: 547 AAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 76.4 bits (189), Expect = 1e-14
Identities = 33/161 (20%), Positives = 40/161 (24%), Gaps = 3/161 (1%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
P P PP AP A A PP AP A
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
+ + A A +E A A+ P + AP A PA+
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479
Query: 464 PPAEGAPAPPAEGAPAPPADAPPA---EPAPPAEAPPAESA 501
P + A P A E P A A A
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520
Score = 69.1 bits (170), Expect = 2e-12
Identities = 31/148 (20%), Positives = 36/148 (24%), Gaps = 2/148 (1%)
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
P PP AP A A PP AP A P
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
+ A A +E PA A A + A P PA+
Sbjct: 426 RQQLQRAQGATKAKKSE--PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKA 483
Query: 476 GAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P A P +A E P
Sbjct: 484 TNPVEVKKEPVATPKALKKALEHEKTPE 511
Score = 63.7 bits (156), Expect = 1e-10
Identities = 44/159 (27%), Positives = 51/159 (32%), Gaps = 11/159 (6%)
Query: 342 EPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
P PE E P A PA A A A A PA PPA AP A P +
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQ 421
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA-------AEGAPAPAEGAPAPPAEGAPRA 452
A + A A +E + P A PAP+ AP + A R
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRW 481
Query: 453 EGAPPAEGAPAPPA-EGAPAPPAEGAPAPPADAPPAEPA 490
+ P E P A A E P A A A
Sbjct: 482 KATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520
Score = 47.2 bits (113), Expect = 2e-05
Identities = 31/161 (19%), Positives = 37/161 (22%), Gaps = 24/161 (14%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA-------- 384
+ P +A A PP AP A P
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426
Query: 385 ------PPAEGAPPAEGAPAAEGAPAPPA-EGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
A A +E A A+ P A E AP A P A
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP---------AKKE 477
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A A + A P A E P A+ A
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
Score = 42.5 bits (101), Expect = 4e-04
Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 2/144 (1%)
Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGA-PPAEGAPP 368
++ AT P P A A+GA
Sbjct: 378 AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
A+ + PA + E AP+A AP + + P E
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSAL-EKAPAKKEAYRWKATNPVEVKKEPVAT 496
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRA 452
P A E P A+ A A
Sbjct: 497 PKALKKALEHEKTPELAAKLAAEA 520
Score = 42.2 bits (100), Expect = 6e-04
Identities = 36/198 (18%), Positives = 48/198 (24%), Gaps = 45/198 (22%)
Query: 217 RIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPP 276
P+PEPE P+SA A P PP P PP P P
Sbjct: 362 AAPLPEPEVPPQSAAPA---------ASAQATAAPTAAVAPPQAPAVPPPPASA-PQQAP 411
Query: 277 SPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHE 336
+ P ++A Q L+R
Sbjct: 412 AVPLPETT-------------------------SQLLAARQQ----------LQRAQGAT 436
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
+ + EP A + A E AP + A + P E
Sbjct: 437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496
Query: 397 PAAEGAPAPPAEGPPPAE 414
P A + P A
Sbjct: 497 PKALKKALEHEKTPELAA 514
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 75.5 bits (186), Expect = 2e-14
Identities = 52/127 (40%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGA-PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
AE A PAE PA A A P A+ A A A AP A PA APPA APP
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA--APPAAAPPAPVA 427
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
APAA A APA A A A A A P AP P A PA AP A
Sbjct: 428 APAAAAPAAAPAAAPAAVA--LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485
Query: 488 EPAPPAE 494
P E
Sbjct: 486 ARLTPTE 492
Score = 74.8 bits (184), Expect = 4e-14
Identities = 43/129 (33%), Positives = 44/129 (34%), Gaps = 2/129 (1%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
PA A A A A P APAA AP A P AP A A PA AA
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAA--APVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
AP A A AP A A A PA A A P AP P + PA
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
Query: 494 EAPPAESAP 502
A
Sbjct: 484 AAARLTPTE 492
Score = 71.3 bits (175), Expect = 5e-13
Identities = 44/117 (37%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
AE A PAE A A PA P A PA A PA A A PA A AP
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP 429
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A AP A A A PA A A P P EPA + AP +APA
Sbjct: 430 AAA-APAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPA 484
Score = 65.5 bits (160), Expect = 3e-11
Identities = 44/119 (36%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
PA A A A PA P P A A A P APAA + A A APP
Sbjct: 366 PAAAAEAAAPAEKK--TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423
Query: 446 AEGAPRAEGAPPAEGAPAP-PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A A AP A A AP APAPPA+ AP A P P + A A
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
Score = 59.7 bits (145), Expect = 2e-09
Identities = 43/139 (30%), Positives = 45/139 (32%), Gaps = 9/139 (6%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
+ A+ E E K A A PA A PA A PA A A P
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEA--AAPAAAPVAQAAAAPAPAAAPAAAASAP--AAPPAA 420
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
APPA A A APA PA P A E P AP P A
Sbjct: 421 APPAPVAAPAAAAPA-----AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 450 PRAEGAPPAEGAPAPPAEG 468
A A PA P EG
Sbjct: 476 APAPAAAPAAARLTPTEEG 494
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/80 (26%), Positives = 21/80 (26%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P PA A PA AP A A A P PA A
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 403 PAPPAEGPPPAEGAPPAEAP 422
PA P A P E
Sbjct: 476 APAPAAAPAAARLTPTEEGD 495
Score = 36.2 bits (84), Expect = 0.038
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P + P P +A A + PE PV P P P
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPV 300
P T ++W ++A+ +
Sbjct: 482 APAAARLTPTE-EGDVWHATVQQLAAAEAI 510
Score = 30.1 bits (68), Expect = 3.6
Identities = 18/101 (17%), Positives = 24/101 (23%), Gaps = 8/101 (7%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
P P ++A + P P P P P
Sbjct: 387 AAPAAAPVAQAAAAPAPAA-------APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQP 319
P L +A V+I V + SA P P
Sbjct: 440 AAPAAVALAPAP-PAQAAPETVAIPVRVAPEPAVASAAPAP 479
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 73.3 bits (180), Expect = 1e-13
Identities = 52/188 (27%), Positives = 61/188 (32%), Gaps = 14/188 (7%)
Query: 328 TLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
TL R + E G P G PA P A A GA GA A
Sbjct: 351 TLLRMLAFEPAVTGGGAPGGGVPA--RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGA 408
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPP---------PAEGAPPAEAPPPAEGAPAAEGAPAPA 438
AP A A AA A APPA P A+G P A A + + A
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDA 468
Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP---APPAEGAPAPPADAPPAEPAPPAEA 495
+ + AP ++ P A PAP A A AP A + PA A
Sbjct: 469 QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
Query: 496 PPAESAPA 503
P P
Sbjct: 529 APEARPPT 536
Score = 69.9 bits (171), Expect = 1e-12
Identities = 55/173 (31%), Positives = 60/173 (34%), Gaps = 9/173 (5%)
Query: 340 GGEPKPEGEAPADG--APPAEGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEG 395
G + G PA G A A GA GA A AP A A APPA
Sbjct: 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430
Query: 396 APAAEGAPA-PPAEGPPPAEGAPPAEAPP-PAEGAPAAEGAPAPAEG-APAPPAEGAPRA 452
AP A A+G P A A A+ APA A
Sbjct: 431 APPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490
Query: 453 EGAPPAEG-APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP-PAESAPA 503
E AP A + A PA A A A A A PAP A P PA +APA
Sbjct: 491 EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Score = 68.0 bits (166), Expect = 6e-12
Identities = 56/187 (29%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 340 GGEPKPEGEAPADG----APPAEGAPPAEG------APPAEGAPPAEGAPPAEGAPPAEG 389
G P+ A A APPA APPA A P A + + E
Sbjct: 407 GAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDER 466
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP---APAEGAPAPPA 446
+ APA A E AP A AP A A + A E APA A
Sbjct: 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAP----------------PAEGAPAPPADAPPAEPA 490
AP A PA APA A GA A A A PA AP A P
Sbjct: 527 PPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPK 586
Query: 491 PPAEAPP 497
P A
Sbjct: 587 PAAPRVA 593
Score = 66.0 bits (161), Expect = 2e-11
Identities = 49/157 (31%), Positives = 55/157 (35%), Gaps = 8/157 (5%)
Query: 349 APADGAPPAEGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
GA A AP A A APPA APPA + A PA A A
Sbjct: 400 TAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASA 459
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP--AP 464
+ PPA+ + A AP A PAP A A A + A
Sbjct: 460 DSRCDERDAQPPAD---SGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
E APA A AP PA AP A A A +A
Sbjct: 517 SREDAPAAAAPPAPEARP-PTPAAAAPAARAGGAAAA 552
Score = 66.0 bits (161), Expect = 2e-11
Identities = 63/290 (21%), Positives = 77/290 (26%), Gaps = 24/290 (8%)
Query: 228 ESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELW 287
E A G P P V + + + P
Sbjct: 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA- 417
Query: 288 LYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEG 347
A P + A + S + +P +
Sbjct: 418 ---AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
+ + A A E AP A A A + PA A E APAA PAP A
Sbjct: 475 GSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA--AASREDAPAAAAPPAPEA 532
Query: 408 EGPPPAEGAPPAEAPPPA---------------EGAPAAEGAPAPAEGAPAPPAEGAPRA 452
P PA AP A A A + A A PA A P APR
Sbjct: 533 RPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV 592
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P A A APP A A A P P + PP + P
Sbjct: 593 AVQVPTPRARA---ATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVP 639
Score = 52.9 bits (127), Expect = 3e-07
Identities = 66/307 (21%), Positives = 82/307 (26%), Gaps = 44/307 (14%)
Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV 279
+P P +A AS V P PP PP
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
Query: 280 T---PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHE 336
+ SA + D S ++ P +A+
Sbjct: 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE-------------- 382
P+ APA + A A AP A PA AP A
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA 559
Query: 383 --------GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA--------------- 419
GA A A PA AA AP P A A
Sbjct: 560 GMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQA 619
Query: 420 ----EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
APPP E P + P A+ P +G + P + AP APAPP +
Sbjct: 620 AESRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVD 679
Query: 476 GAPAPPA 482
P PPA
Sbjct: 680 TRPLPPA 686
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 68.8 bits (169), Expect = 3e-12
Identities = 35/90 (38%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
P A P A A A A A A APA PA PP A A PA P PA A AA
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA--AAPAAPPKPAAAAAAAAA 95
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
AP A A A + P GA A
Sbjct: 96 PAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 67.2 bits (165), Expect = 1e-11
Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
AD P + AP A A A A AP A+ APPA APAA PA A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
P A A A + P GA A
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEV-TPLRGAAA 125
Score = 66.5 bits (163), Expect = 2e-11
Identities = 33/88 (37%), Positives = 35/88 (39%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P + AP A A A A A APA A PA A A APP A A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPA 498
APPA A A PA A + P A
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 66.1 bits (162), Expect = 2e-11
Identities = 28/80 (35%), Positives = 29/80 (36%)
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P AA A A A APA A AP A AP A PA A A AP
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 482 ADAPPAEPAPPAEAPPAESA 501
A A A PA A +
Sbjct: 98 APPAAAAAAAPAAAAVEDEV 117
Score = 64.9 bits (159), Expect = 5e-11
Identities = 29/88 (32%), Positives = 32/88 (36%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
+ AP A A A A AP A+ APPA AP A PAA A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
PP A A A + GA A
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 63.8 bits (156), Expect = 1e-10
Identities = 27/79 (34%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
P A A A A A AP A A PA PA A AP PA A A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAA-PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 484 APPAEPAPPAEAPPAESAP 502
A P A A A
Sbjct: 97 AAPPAAAAAAAPAAAAVED 115
Score = 63.4 bits (155), Expect = 2e-10
Identities = 33/92 (35%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
P + AP A A A A AP A+ AP A APA P P PA A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP---PKPAAAAAAAA 94
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
AP A AA A A P GA A
Sbjct: 95 APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126
Score = 63.4 bits (155), Expect = 2e-10
Identities = 37/89 (41%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P A P A AA A + PA P A PA APP A APAA PA A A A P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA-APAAPPKPAAAAAAAAAP 96
Query: 446 AEGAPRAEGAPPAEGAPAP---PAEGAPA 471
A A A PA A P GA A
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 62.6 bits (153), Expect = 3e-10
Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P + P A A A A APAA+ APA PA AP A PA
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA---------APAAPPKPAA 88
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A AP A A A A PA A E P A A
Sbjct: 89 AAAAAAAPAAPPAAAAA--AAPAAAAVEDEVTPLRGAAA 125
Score = 61.4 bits (150), Expect = 7e-10
Identities = 30/88 (34%), Positives = 31/88 (35%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P A A A A PA PA PAA AP + A A A AP
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
A A A APA A P GA A
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 60.7 bits (148), Expect = 1e-09
Identities = 35/92 (38%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
AP A A A A A PA AP A P A PA PA A AA A
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98
Query: 405 PPAEGPPPAEGAPPAEAPPPAE-----GAPAA 431
PPA A A PA A E GA AA
Sbjct: 99 PPA----AAAAAAPAAAAVEDEVTPLRGAAAA 126
Score = 59.9 bits (146), Expect = 2e-09
Identities = 28/83 (33%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A G + A A A A AP A A A A AP A P A A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP-AAAAAA 92
Query: 458 AEGAPAPPAEGAPAPPAEGAPAP 480
A APPA A A PA A
Sbjct: 93 AAAPAAPPAAAAAAAPAAAAVED 115
Score = 56.1 bits (136), Expect = 3e-08
Identities = 26/64 (40%), Positives = 29/64 (45%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
G + A A A A A A PA APA PA PA A A P +PA A A A
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 500 SAPA 503
+AP
Sbjct: 97 AAPP 100
Score = 47.2 bits (113), Expect = 2e-05
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
T + AP A+ APPA AP A P A A A P
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP----AAAAAAAAAPAAPP 100
Query: 398 AAEGAPAPPAEGPPP 412
AA A AP A
Sbjct: 101 AAAAAAAPAAAAVED 115
Score = 46.8 bits (112), Expect = 2e-05
Identities = 20/73 (27%), Positives = 20/73 (27%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
A A A A PA A A APP A A A PA
Sbjct: 43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102
Query: 393 AEGAPAAEGAPAP 405
A A A A
Sbjct: 103 AAAAAPAAAAVED 115
Score = 44.1 bits (105), Expect = 2e-04
Identities = 24/81 (29%), Positives = 25/81 (30%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
A+ P A APPA AP A P A A A A P A
Sbjct: 46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAA 105
Query: 393 AEGAPAAEGAPAPPAEGPPPA 413
A A AA P G A
Sbjct: 106 AAPAAAAVEDEVTPLRGAAAA 126
Score = 41.0 bits (97), Expect = 0.002
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
A+ P +APA AP A P A A AP A A A AP
Sbjct: 49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108
Query: 392 PAEGAPAAE----GAPA 404
A GA A
Sbjct: 109 AAAAVEDEVTPLRGAAA 125
Score = 37.2 bits (87), Expect = 0.026
Identities = 18/111 (16%), Positives = 23/111 (20%), Gaps = 10/111 (9%)
Query: 283 PEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGE 342
+ D S +A + P +A
Sbjct: 26 DPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAP----------AAKAPAAPAPAPP 75
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
AP A A A P A A A + P GA A
Sbjct: 76 AAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126
Score = 31.4 bits (72), Expect = 1.3
Identities = 6/65 (9%), Positives = 10/65 (15%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
++ A+ P PP P P +
Sbjct: 47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
Query: 281 PNPEE 285
Sbjct: 107 APAAA 111
Score = 31.0 bits (71), Expect = 1.8
Identities = 9/55 (16%), Positives = 10/55 (18%)
Query: 229 SATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
+ P P P PP P PP P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA 91
Score = 31.0 bits (71), Expect = 1.9
Identities = 7/67 (10%), Positives = 10/67 (14%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
+ + P PP P P P+
Sbjct: 51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110
Query: 279 VTPNPEE 285
E
Sbjct: 111 AAVEDEV 117
Score = 30.6 bits (70), Expect = 2.1
Identities = 10/65 (15%), Positives = 13/65 (20%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
P P +A A+ P PP PP +
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 281 PNPEE 285
P
Sbjct: 98 APPAA 102
Score = 30.6 bits (70), Expect = 2.3
Identities = 11/65 (16%), Positives = 15/65 (23%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
+A A + P P P PP+P P PP+
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
Query: 281 PNPEE 285
Sbjct: 105 AAAPA 109
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 59.6 bits (145), Expect = 2e-09
Identities = 36/111 (32%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
APPA AP A PPA A AP AE P P E A APA
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAE-PAPWLVEHAKRLTAQREQLVARAAAPAA 110
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
E PA A RA A A A A ADA A
Sbjct: 111 PE--AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159
Score = 58.4 bits (142), Expect = 4e-09
Identities = 34/110 (30%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP----PAEGAPRAEGAP 456
A APPA P A PPA AP A PAP A E AP
Sbjct: 49 AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP 108
Query: 457 PAEGAPAPPAEGAPA---PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A AP A A A A AP A A A++ A
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKA 158
Score = 55.4 bits (134), Expect = 4e-08
Identities = 29/116 (25%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
APPA AP A A AP A P A AP E A A
Sbjct: 52 APPAAAAPA---AAQPPPAAAPAAVSRPAA--PAAEPAPWLVEHAKRLTAQREQLVARAA 106
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
PA +A AP A A A A A +A
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162
Score = 55.0 bits (133), Expect = 5e-08
Identities = 32/100 (32%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAP--PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
AP A PA PP AP A P PA P E A APA P
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
P A A A AA AP P A A A
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151
Score = 53.0 bits (128), Expect = 2e-07
Identities = 39/123 (31%), Positives = 40/123 (32%), Gaps = 7/123 (5%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
APPA AP A PP AP A P APAAE AP E
Sbjct: 52 APPAAAAPAAA-QPPPAAAPAAVSRP---AAPAAEPAPWLVEHAKRLTA---QREQLVAR 104
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
APAA A APA A AE A R A A A A+ A
Sbjct: 105 AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIV 164
Query: 486 PAE 488
Sbjct: 165 NDT 167
Score = 39.6 bits (93), Expect = 0.003
Identities = 25/102 (24%), Positives = 25/102 (24%), Gaps = 18/102 (17%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPP------------------AEGAPPAEGAPPAEGA 390
A A A AP AE AP A E PA A
Sbjct: 61 AAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPA 120
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
A AA A P P A A A A A
Sbjct: 121 ERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162
Score = 36.1 bits (84), Expect = 0.038
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA--PAPPADAP 485
A A A A A A PA P AP A PA PA E A +
Sbjct: 42 ALADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQL 101
Query: 486 PAEPAPPAEAPPAESAPA 503
A A PA A
Sbjct: 102 VARAAAPAAPEAQAPAAP 119
Score = 32.6 bits (75), Expect = 0.46
Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 1/109 (0%)
Query: 290 LKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEA 349
L +A+ + +AVS P + + + E + A
Sbjct: 51 LAPPAAAAPAAAQPPPAA-APAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPA 109
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ PA A A A A A P P A A+ A
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKA 158
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 57.9 bits (140), Expect = 1e-08
Identities = 53/299 (17%), Positives = 83/299 (27%), Gaps = 14/299 (4%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P + + A + +PP P P P
Sbjct: 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212
Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
I + SP D ++S+ S + + P P + T
Sbjct: 213 ISASASSPAPAPGRSAAD---DAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAE 388
+AS P P + + +P + G+ PA +P A + E + +
Sbjct: 270 WEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSST 329
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE--GAPAPPA 446
+ AA P+ P P+ PPA+ P + + +PA G P
Sbjct: 330 SSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPP-------AEGAPAPPADAPPAEPAPPAEAPPA 498
A A A + PA P P P EP P + PP
Sbjct: 390 ARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448
Score = 55.2 bits (133), Expect = 7e-08
Identities = 27/164 (16%), Positives = 35/164 (21%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
+ A PP A +
Sbjct: 44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
P P P PP +PPP+ +E P P A
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A + A + A +PPAEP P A P
Sbjct: 164 SDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/212 (22%), Positives = 69/212 (32%)
Query: 292 DTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPA 351
D +S S + D E V A + E + +
Sbjct: 34 DLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLS 93
Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
AP + + P P PP PP+ +E PPA PP
Sbjct: 94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
A +P A A A AA +P E A AP + A PPA +P PP +P
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213
Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ +PAP A+ A + + + S +
Sbjct: 214 SASASSPAPAPGRSAADDAGASSSDSSSSESS 245
Score = 51.7 bits (124), Expect = 7e-07
Identities = 47/287 (16%), Positives = 81/287 (28%), Gaps = 12/287 (4%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
P P P A+ A+ D + P E P P EPP P
Sbjct: 146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPR 205
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
+ A + DD + S+ + + +
Sbjct: 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITL 265
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGA 396
+ G P + + +P + G+ PA +P A + E +
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
++ + + + G + G P+ +P P+ P A+ + P+ P
Sbjct: 326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA----------P 375
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ A A A A A DA PA P ++ A
Sbjct: 376 SSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422
Score = 50.6 bits (121), Expect = 2e-06
Identities = 55/312 (17%), Positives = 88/312 (28%), Gaps = 15/312 (4%)
Query: 205 PEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEP 264
P E + + R A+ A + P P+ PP P P P P
Sbjct: 73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--PPPTPPPASPPPSP 130
Query: 265 EPPVEEIPPTPPSPV-TPNPEELWLYLKDTVSASNPVSIDD--LVEKLMSAVSATPQPLL 321
P + E+ SP P AS+ S L + P
Sbjct: 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190
Query: 322 KSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 381
T AS P + AP A A + + + G
Sbjct: 191 AEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG 250
Query: 382 E-----GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
PA P A+ GP + +P +P P+ +P + AP+
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310
Query: 437 PA-----EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+ + + + A +P + +P P P + P +
Sbjct: 311 SPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370
Query: 492 PAEAPPAESAPA 503
P+ AP + +A A
Sbjct: 371 PSRAPSSPAASA 382
Score = 50.2 bits (120), Expect = 2e-06
Identities = 41/172 (23%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Query: 337 ETEGGEPKPEGEAPADGAP--PAEGAPPAEGAPPAEGA--PPAEGAPPAEGAPPAEGAPP 392
EGGE P A A G+ + AE A GA + P G PP
Sbjct: 14 AAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP 73
Query: 393 AEGAPAAEGAPAPPAEGP-PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
G A A PA P P++ P P +PP AP
Sbjct: 74 GPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPD 133
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD-APPAEPAPPAEAPPAESAP 502
G+P PP +P A +D A + A P +P +
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185
Score = 49.0 bits (117), Expect = 6e-06
Identities = 48/246 (19%), Positives = 70/246 (28%), Gaps = 8/246 (3%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
PP P P P E S T + L + P + A+
Sbjct: 66 EPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS 125
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
P P + + LR S P G +P A ++ A + A P
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP--------AAVASDAASSRQAALPLS 177
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
AP + A P P A +P PP P + A P A A + +
Sbjct: 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS 237
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
+ + + P E P P A G + P A +
Sbjct: 238 DSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
Query: 497 PAESAP 502
P+ S+P
Sbjct: 298 PSPSSP 303
Score = 48.6 bits (116), Expect = 6e-06
Identities = 43/315 (13%), Positives = 78/315 (24%), Gaps = 13/315 (4%)
Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPP 259
E + + P E P P + PP P + E+ P
Sbjct: 81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140
Query: 260 PEPEPEPPVEEIPPTPPSPV-----TPNPEELWLYL---KDTVSASNPVSIDDLVEKLMS 311
PP P SP + + L L ++T A + + +
Sbjct: 141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200
Query: 312 AVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG 371
A S P + + + + + G P P
Sbjct: 201 AASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA---EGA 428
AP E + + A ++ P + G+ PA + P A +
Sbjct: 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS 320
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
+ + + + + G P+ P + P+ AP +
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSP--GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378
Query: 489 PAPPAEAPPAESAPA 503
A + A
Sbjct: 379 AASAGRPTRRRARAA 393
Score = 46.7 bits (111), Expect = 3e-05
Identities = 30/147 (20%), Positives = 42/147 (28%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
AEG P G + ++G ++ A A A A E P
Sbjct: 15 AEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPG 74
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P EAP + A +PA P +P PPA P+P +
Sbjct: 75 PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDL 134
Query: 477 APAPPADAPPAEPAPPAEAPPAESAPA 503
+ P P + S A
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAA 161
Score = 40.9 bits (96), Expect = 0.002
Identities = 29/154 (18%), Positives = 38/154 (24%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
+ P A P P A PAA+ A ++
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASK 818
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
+ P A P PA + + ++ A A G P
Sbjct: 819 RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPE 878
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A P AP A A P AP PA
Sbjct: 879 PRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK 912
Score = 39.8 bits (93), Expect = 0.004
Identities = 25/148 (16%), Positives = 34/148 (22%)
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
P A P P A PA A ++
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
+ P + P A P + + +++ A A P PP
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879
Query: 476 GAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A P A A P PA
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRP 907
Score = 39.8 bits (93), Expect = 0.004
Identities = 33/159 (20%), Positives = 42/159 (26%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
PA A PAE A +PP + PA A + +
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P A PP A + + + A G R + P P
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A P + A A P PA PA P
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918
Score = 38.6 bits (90), Expect = 0.008
Identities = 36/188 (19%), Positives = 50/188 (26%), Gaps = 3/188 (1%)
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
L+ + + + L E G P A A P A A
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
+ +E + PA AA P + ++ A G
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA---DAPPAEPAPPA 493
A A P + A A A P P P G P P PP + PA
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPA 939
Query: 494 EAPPAESA 501
+ A +A
Sbjct: 940 PSAAALAA 947
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 57.7 bits (140), Expect = 1e-08
Identities = 22/149 (14%), Positives = 24/149 (16%), Gaps = 4/149 (2%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P P A + P A P A P
Sbjct: 860 EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPA----PPAEGAPRAEGAPPAEGAPAPPAEGA 469
AP E P + A P A A
Sbjct: 920 IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
AP A EP P
Sbjct: 980 AAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
Score = 57.0 bits (138), Expect = 2e-08
Identities = 35/173 (20%), Positives = 41/173 (23%), Gaps = 3/173 (1%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
R + E E + P P A + P A P A P
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908
Query: 391 PPAEGAPAAEGAPAPPAEGPPP-AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
E AP E P E P E A+ A
Sbjct: 909 VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV 968
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
AE A+ AP A P AP P E A +AP
Sbjct: 969 VVAEPEVVAQ-PAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHA-TAP 1019
Score = 54.7 bits (132), Expect = 8e-08
Identities = 28/132 (21%), Positives = 33/132 (25%), Gaps = 1/132 (0%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A + P P A P AP E E AE P P
Sbjct: 861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETT-HPEV 919
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
AP + ++ A E A AE P E A A P P
Sbjct: 920 IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979
Query: 492 PAEAPPAESAPA 503
A +A
Sbjct: 980 AAPVVAEVAAEV 991
Score = 40.4 bits (95), Expect = 0.002
Identities = 56/260 (21%), Positives = 72/260 (27%), Gaps = 32/260 (12%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
PE ++ I P P+ E + P E P V P V E
Sbjct: 834 PEMASGKVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAE 893
Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
+ P P PEE V ++P I V + ++ + + + V
Sbjct: 894 VVEEPVVVAEPQPEE-----VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVA----- 943
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
E E + A + A AE P P A AE A
Sbjct: 944 -----EHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAP--------VVAEVA 988
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA----PAPPA 446
E A E AP E A P APA E P + P
Sbjct: 989 AEVETVTAVEPEVAPAQVPEATVEH---NHATAPMTRAPAPEYVPEAPRHSDWQRPTFAF 1045
Query: 447 EGAPRAEGAPPAEGAPAPPA 466
EG A G A AP
Sbjct: 1046 EGKGAAGGHSATHHASAPAT 1065
Score = 37.7 bits (88), Expect = 0.016
Identities = 37/187 (19%), Positives = 41/187 (21%), Gaps = 13/187 (6%)
Query: 303 DDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPP 362
D VE+ A QP++ V + E P E
Sbjct: 852 DVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVV 911
Query: 363 AEGAPPAEGAPPAEGAPP--AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
E P A P P E P E
Sbjct: 912 VETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVA 971
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG------APAPPAEGAPAPPA 474
P A A AE E P A E A AP APAP
Sbjct: 972 EPEVVAQPAAPVVAEVAAEVETVTAVE--PEVAPAQVPEATVEHNHATAPMTR-APAP-- 1026
Query: 475 EGAPAPP 481
E P P
Sbjct: 1027 EYVPEAP 1033
Score = 34.6 bits (80), Expect = 0.14
Identities = 18/109 (16%), Positives = 20/109 (18%), Gaps = 3/109 (2%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA-EGAPAPPAEGAPRAEGA 455
P E E A AP E E AE
Sbjct: 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAP--PADAPPAEPAPPAEAPPAESAP 502
P A P P +D A+ P E
Sbjct: 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQD 954
Score = 32.3 bits (74), Expect = 0.67
Identities = 33/226 (14%), Positives = 39/226 (17%), Gaps = 54/226 (23%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
+RQ + + E AP A E P + P E
Sbjct: 722 QRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRT--ELVKVPLPVVAQTAPEQ 779
Query: 390 APPAEGAPA-AEGAP-----AP------------------PAEGPPPAEGA--------- 416
G P +P P + P P A
Sbjct: 780 DEENNAENRDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASG 839
Query: 417 -------------------PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
AE A A AP E P
Sbjct: 840 KVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPV 899
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P A P P A E A
Sbjct: 900 VVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEH 945
Score = 30.0 bits (68), Expect = 4.2
Identities = 30/101 (29%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
A P+E A P PA PPA P A AP A PPA
Sbjct: 508 EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVV---AAAPKAAAATPPA 564
Query: 447 EGA--PRAEGAPPA--EGAPAPPAEGAPAPPAEGAPAPPAD 483
+ R GA A G + PAP AE P D
Sbjct: 565 QPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKPERQQD 605
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 57.1 bits (138), Expect = 1e-08
Identities = 28/92 (30%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P P P A AP P PA P A A PP E P E A P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE--PVRETATP-PPVPPRPVAPP 420
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
E AP A P + P P
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 51.3 bits (123), Expect = 8e-07
Identities = 28/107 (26%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P PA A AP P PA P+ P A A P A P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPA----PSTRPKAAAAANIP---PKEPVRETATPPPVP 413
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
PR P + P A P + P APP E A
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460
Score = 48.3 bits (115), Expect = 7e-06
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
P + A P AP+ P+ P A A P E A P P
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVP 422
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
E AP + A P PAPP E A AD
Sbjct: 423 HTPESAP--KLTRAAIPVDEKPKYTPPAPPKEEEKALIADG 461
Score = 46.7 bits (111), Expect = 2e-05
Identities = 26/109 (23%), Positives = 28/109 (25%), Gaps = 6/109 (5%)
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAE-GAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
EA P + A P AP PA P A A P P P
Sbjct: 357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
P P P + P E P PAPP E
Sbjct: 417 VAPPVP--HTPESAPKLTRAAIPVDE---KPKYTPPAPPKEEEKALIAD 460
Score = 46.0 bits (109), Expect = 4e-05
Identities = 36/112 (32%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
P + A P AP PA P AA A PP P E A P PP
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRP----KAAAAANIPPK--EPVRETATPPPVPPR- 415
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P A P E AP P E P PAPP E A A+G
Sbjct: 416 ---PVAPPVPHTPESAPKLTRAAIPVDEK--PKYTPPAPPKEEEKALIADGD 462
Score = 44.4 bits (105), Expect = 1e-04
Identities = 20/86 (23%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP-PAEGA 477
P P P A AP+P PAP + A A PP E
Sbjct: 361 VPVPAPQPAKPTAA-APSPVRPTPAP-------STRPKAAAAANIPPKEPVRETATPPPV 412
Query: 478 PAPPADAPPAEPAPPAEAPPAESAPA 503
P P P A + P
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRAAIPV 438
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/101 (20%), Positives = 22/101 (21%), Gaps = 3/101 (2%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
AP P A P P P A A P P
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP-VPPRPVAPPVPH 423
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P A A P P P E A A+G
Sbjct: 424 TPESAPKLTRAAIPVDE--KPKYTPPAPPKEEEKALIADGD 462
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/99 (19%), Positives = 24/99 (24%), Gaps = 1/99 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
+P +P P P A A P PP APP P +
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES- 427
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
A P + APP E +
Sbjct: 428 APKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQ 466
Score = 33.6 bits (77), Expect = 0.24
Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 302 IDDLVEKLMSAVSATPQPLLKSVVKDTLR-----RQASHEETEGGEPKPEGEAPADGAPP 356
I+ L+ + + A P S V+ T + A+ EP E A PP
Sbjct: 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRE-TATPPPVPP 414
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
APP P + P E APP E A
Sbjct: 415 RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460
Score = 30.9 bits (70), Expect = 1.7
Identities = 23/106 (21%), Positives = 25/106 (23%), Gaps = 22/106 (20%)
Query: 311 SAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAE 370
S V TP P PK A P PP
Sbjct: 377 SPVRPTPAPS--------------------TRPKAAAAANIPPKEPVRETATPPPVPPRP 416
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
APP P + A P + P PAPP E
Sbjct: 417 VAPPVPHTPES-APKLTRAAIPVDEKPKYT-PPAPPKEEEKALIAD 460
Score = 30.9 bits (70), Expect = 1.9
Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 219 PIPEP-EPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS 277
P P P P +T P P E VPP P P P E P
Sbjct: 374 AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTR 433
Query: 278 PVTPNPE 284
P E
Sbjct: 434 AAIPVDE 440
Score = 30.5 bits (69), Expect = 2.6
Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 219 PIPEPEPEPESATDASDVEDGK----ETPLPPEGEQPPVEEVP--PPPEPEPEPPVEEIP 272
P+P P+P +A S V PP E V P P P PV
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
Query: 273 PTPPSPVTPNPEE 285
P P
Sbjct: 422 PHTPESAPKLTRA 434
Score = 29.4 bits (66), Expect = 5.5
Identities = 15/65 (23%), Positives = 19/65 (29%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
P P P+ +A + E +ET PP PV P P P
Sbjct: 383 PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKP 442
Query: 279 VTPNP 283
P
Sbjct: 443 KYTPP 447
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 57.1 bits (138), Expect = 1e-08
Identities = 37/144 (25%), Positives = 46/144 (31%), Gaps = 27/144 (18%)
Query: 308 KLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP 367
+ +A + + + + R E E EG A A
Sbjct: 5 LIGLVAAAAFEVITSAQLSRIGR--IERELRELRSLVAEGAAGPV-------------AK 49
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
AE AP A A P P A + A+ P P P AP AE P
Sbjct: 50 AAEQMA----APEAAEAAPL---PAAAESIASPEVPPPVPPAPAQEGEAPAAEQP---SA 99
Query: 428 APAAEGAPAPAEGAPAPPAEGAPR 451
PA APAPAE P P+ A
Sbjct: 100 VPAPSAAPAPAE--PVEPSLAANP 121
Score = 57.1 bits (138), Expect = 1e-08
Identities = 32/93 (34%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A AAE AP A P PA A A PAPA+ AP AE
Sbjct: 48 AKAAEQMAAPEAAEAAPL----PAAAESIASPEVPPPVPPAPAQEGEAPAAE-------- 95
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
PAP A APA P E + A A E
Sbjct: 96 -QPSAVPAPSAAPAPAEPVEPSLAANPFAAAIE 127
Score = 56.8 bits (137), Expect = 2e-08
Identities = 29/92 (31%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 413 AEGAPPAEAPPP--AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
AEGA A AAE AP PA A + + P P E
Sbjct: 40 AEGAAGPVAKAAEQMAAPEAAEAAPLPAA-AESIASPEVP----PPVPPAPAQEG-EAPA 93
Query: 471 APPAEGAPAPPADAPPAEPAPP--AEAPPAES 500
A PAP A PAEP P A P A +
Sbjct: 94 AEQPSAVPAPSAAPAPAEPVEPSLAANPFAAA 125
Score = 56.0 bits (135), Expect = 3e-08
Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA-EGAPAPPAEGAPRAEGAPP 457
A G A AE AP AE AP A + A P P + AP
Sbjct: 43 AAGPVAKAAEQMA---------APEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPA 93
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
AE PAP A APA P + A
Sbjct: 94 AE-----QPSAVPAPSAAPAPAEPVEPSLAAN 120
Score = 53.3 bits (128), Expect = 2e-07
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
AA AE AP A A A + +P P PAP EG AP A+ P A
Sbjct: 42 GAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG-EAPAAEQPSAV 100
Query: 489 PAPPAEAPPAESA 501
PAP A PAE
Sbjct: 101 PAPSAAPAPAEPV 113
Score = 47.9 bits (114), Expect = 1e-05
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE-PAPPA 493
A G A AE AE AP P A + A P P P AP E AP A
Sbjct: 40 AEGAAGPVAKAAEQMA---APEAAEAAPLPAAAESIASPE--VPPPVPPAPAQEGEAPAA 94
Query: 494 EAPPAESAPA 503
E P A AP+
Sbjct: 95 EQPSAVPAPS 104
Score = 39.4 bits (92), Expect = 0.005
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPP-AEGAPAPPADAPPAEPAPPAEAPPAESAP 502
R+ A A G A AE AP AE AP P A A P P PPA +
Sbjct: 32 LRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQE 88
Score = 37.5 bits (87), Expect = 0.018
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
E PE+A A PLP E EVPPP P P E PS
Sbjct: 49 KAAEQMAAPEAAEAA---------PLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSA 99
Query: 279 VTPNPEELW 287
V P P
Sbjct: 100 V-PAPSAAP 107
Score = 29.8 bits (67), Expect = 4.4
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQPPV---EEVPPPPEPEPEPPVEEIP-PTPPSPVTP 281
E E S V +G P+ EQ E P P E+P P PP+P
Sbjct: 29 ERELRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQE 88
Query: 282 NP 283
Sbjct: 89 GE 90
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 56.2 bits (136), Expect = 1e-08
Identities = 29/129 (22%), Positives = 36/129 (27%), Gaps = 7/129 (5%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE--GPPPAEGAPPAEAPPPAEGAPAAEGA 434
A A P+ + PP P PP PP A+ A
Sbjct: 70 RVNHAPANAQEHEAAR----PSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPA 125
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
P P + P P + P P AP P + A P +P P AE
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAP-QPEPVAE 184
Query: 495 APPAESAPA 503
P P
Sbjct: 185 PAPVMDKPK 193
Score = 54.7 bits (132), Expect = 4e-08
Identities = 32/128 (25%), Positives = 37/128 (28%), Gaps = 3/128 (2%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
A A + P A PP PP AP PA+ AP
Sbjct: 70 RVNHAPANAQEHEAARPSPQHQYQ--PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
PA P + P AP PAE AP + P AEPA
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE-PVAEPA 186
Query: 491 PPAEAPPA 498
P + P
Sbjct: 187 PVMDKPKR 194
Score = 50.4 bits (121), Expect = 9e-07
Identities = 28/129 (21%), Positives = 36/129 (27%), Gaps = 7/129 (5%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAP---PAEGAPPAEGAPPAEGAPPAEGAPPA 387
+ +H E + +P P + PP PP PA+ AP
Sbjct: 69 HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128
Query: 388 EGAPPA---EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
P P + A P P AP P A P P PAP
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVA-EPAP 187
Query: 445 PAEGAPRAE 453
+ R E
Sbjct: 188 VMDKPKRKE 196
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/110 (20%), Positives = 28/110 (25%), Gaps = 5/110 (4%)
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
QP S +Q E + P PA P P + P
Sbjct: 92 YQPPYASAQPRQPVQQ-PPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV 150
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
P P AP P + P AE AP + P E
Sbjct: 151 APAP----QPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE 196
Score = 34.2 bits (79), Expect = 0.13
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Query: 307 EKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPK-PEGEAPADGAPPAEGAPPAEG 365
P + + R + P+ E P + AP +
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
A P + PAE + P AE AP +
Sbjct: 157 VHSAP-QPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190
Score = 33.9 bits (78), Expect = 0.16
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVP--PPPEPEPEPPVEEIPPTPP 276
P +P + P P + PV++ P PE + PV P
Sbjct: 95 PYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAP 154
Query: 277 SPVTPNPE 284
PV P+
Sbjct: 155 QPVHSAPQ 162
Score = 33.5 bits (77), Expect = 0.24
Identities = 13/74 (17%), Positives = 21/74 (28%)
Query: 212 ESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEI 271
S + R P+ +P A P+ QP E+ P P +
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156
Query: 272 PPTPPSPVTPNPEE 285
+ P P +
Sbjct: 157 VHSAPQPAQQAFQP 170
Score = 32.3 bits (74), Expect = 0.61
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 5/59 (8%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV 279
P +P A P+ Q + P P+PEP E P
Sbjct: 141 PLQQPVSPQVAPAPQPV-----HSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194
Score = 31.2 bits (71), Expect = 1.3
Identities = 28/174 (16%), Positives = 38/174 (21%), Gaps = 50/174 (28%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
P E + + P + PV+ PP P P PV
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQ--QPPEAQVPPQHAPRPAQPAPQPVQ 130
Query: 281 PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEG 340
+ QPL
Sbjct: 131 QPAYQ----------------------------PQPEQPLQ------------------- 143
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
+P APA + P + PAE + P AE AP + E
Sbjct: 144 -QPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE 196
Score = 30.0 bits (68), Expect = 3.0
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPL------PPEGEQPPVEEVPPPPE 261
V + + P P+P +P +P P P ++ P E
Sbjct: 113 VPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE 172
Query: 262 PEPEPPVEEIPPTPPSPVTPNPEE 285
P P E + P P +E
Sbjct: 173 PVAAPQPEPVAEPAPVMDKPKRKE 196
Score = 29.2 bits (66), Expect = 5.0
Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 24/166 (14%)
Query: 223 PEPEPESATDASDVEDG----KETPLPPEGEQPPVEEVPPP-PEPEPEPPVEEIPPTPPS 277
+ + +S + + ++G + + E P P+ + +PP P
Sbjct: 46 SKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYAS--AQPRQ 103
Query: 278 PVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEE 337
PV PE V A QP + + L++ S +
Sbjct: 104 PVQQPPEA-------------QVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV 150
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPP-AEGAP-PAEGAPPAEGAPPA 381
P+P AP + A P A P P P P
Sbjct: 151 AP--APQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194
Score = 28.5 bits (64), Expect = 8.3
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 205 PEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEP 264
P+ V++P + + + P+ A V + PV P P EP
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185
Query: 265 EPPVEEIPP 273
P +++
Sbjct: 186 APVMDKPKR 194
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 55.2 bits (133), Expect = 5e-08
Identities = 35/153 (22%), Positives = 42/153 (27%), Gaps = 2/153 (1%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+ +P G D P A A PA P GA P P A A A
Sbjct: 127 DDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY 186
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
AP + P G P + P + + P E P A
Sbjct: 187 APEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRP--EPPPGAGHVHRGGPG 244
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
P + P AP P A P P P
Sbjct: 245 PPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEP 277
Score = 54.8 bits (132), Expect = 7e-08
Identities = 42/166 (25%), Positives = 46/166 (27%), Gaps = 4/166 (2%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
T E G P +G G P + P A A PA P GA P
Sbjct: 102 ARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP-- 159
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
A G PP A A PA P E A P +
Sbjct: 160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
Query: 455 APPAEGAPAP-PAEGAPAPPAEGAPAPPADAPPAEP-APPAEAPPA 498
P + P P GA G P D P P P A P A
Sbjct: 220 RPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLA 265
Score = 41.3 bits (97), Expect = 0.001
Identities = 47/215 (21%), Positives = 56/215 (26%), Gaps = 33/215 (15%)
Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLM 310
P E PPP E+P P P + D
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYE--------------GYGGPRADDRPPGLPR 135
Query: 311 SAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAE 370
T +P A + EP A D + AP
Sbjct: 136 QDQLPTARP-------------AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPY-- 180
Query: 371 GAPPAEGAPPAE-GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
A PA AP E P + P + P P + E PP A
Sbjct: 181 -ASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVH 239
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
G P P E AP P A G A+ APAP
Sbjct: 240 --RGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAP 272
Score = 40.2 bits (94), Expect = 0.002
Identities = 30/140 (21%), Positives = 34/140 (24%), Gaps = 6/140 (4%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
AP E P A + P A P P P G P EG
Sbjct: 67 APIISETLSRELGRPIRIAITVD--PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGP 124
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
A G P + P PA PA GA P + AP
Sbjct: 125 RADDRPPGLPRQDQLPTAR---PAYPAYQQRPEPGAWPRAADDYGW-QQQRLGFPPRAPY 180
Query: 480 PPADAPPAEPAPPAEAPPAE 499
+ E E A
Sbjct: 181 ASPASYAPEQERDREPYDAG 200
Score = 36.7 bits (85), Expect = 0.030
Identities = 20/84 (23%), Positives = 22/84 (26%)
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
E PP A P G G PRA+ PP PA PA
Sbjct: 94 EPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRP 153
Query: 480 PPADAPPAEPAPPAEAPPAESAPA 503
P P A + P
Sbjct: 154 EPGAWPRAADDYGWQQQRLGFPPR 177
Score = 32.1 bits (73), Expect = 0.67
Identities = 42/209 (20%), Positives = 57/209 (27%), Gaps = 26/209 (12%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPP------PEPEPEPPVEEIPPT 274
P P P T ++ P G + P P P P + P
Sbjct: 95 PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPE 154
Query: 275 PPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQAS 334
P + + W + P + S S P+ D R +
Sbjct: 155 PGAWPRAADDYGWQQQRLGFPPRAPYA---------SPASYAPEQERDREPYDAGRPEYD 205
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
+ P+P+ + P PP G G P A P AP
Sbjct: 206 QRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVH-RGGPGPPERDDAPVVPIRPSAP--- 261
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
G AA+ APAP G P A P
Sbjct: 262 GPLAAQPAPAP-------GPGEPTARLNP 283
Score = 30.2 bits (68), Expect = 3.1
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEP 266
+ ++ + + + D + P PP G P PPE +
Sbjct: 193 DREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPER-DDA 251
Query: 267 PVEEIPPTPPSPVTPNPEE 285
PV I P+ P P+ P
Sbjct: 252 PVVPIRPSAPGPLAAQPAP 270
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 54.0 bits (130), Expect = 1e-07
Identities = 26/115 (22%), Positives = 28/115 (24%), Gaps = 1/115 (0%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
P + A P A P GP P G P A P A A
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPV-GMPAHTARPSRVARGDPVRPTAHHAALRA 694
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P A G P A P + APP P AE
Sbjct: 695 PQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADG 749
Score = 52.5 bits (126), Expect = 4e-07
Identities = 20/108 (18%), Positives = 23/108 (21%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
P + A P G P P P A G P P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P G PP + A + APP P
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPG 743
Score = 51.0 bits (122), Expect = 1e-06
Identities = 28/130 (21%), Positives = 33/130 (25%), Gaps = 13/130 (10%)
Query: 366 APPAEGAPPA-EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
P + A P + E P P G PA P+ A G P A
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP--VRPTAHHAALR 693
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A AP G P G P PP A A P + P P
Sbjct: 694 APQAPRPGGPPGGGGGLPPPPDLPA----------AAGPAPCGSSLIASPTAPPEPEPPG 743
Query: 485 PPAEPAPPAE 494
+
Sbjct: 744 AEQADGAENQ 753
Score = 48.6 bits (116), Expect = 6e-06
Identities = 28/126 (22%), Positives = 32/126 (25%), Gaps = 9/126 (7%)
Query: 347 GEAPADGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPAAEGAP 403
G P + E P P G P P P
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
AP A P G PPP + AA AP + +P A P P A
Sbjct: 694 APQAPRPGGPPGGGGG-LPPPPDLPAAAGPAPCGSSLIASPTAPPEP-----EPPGAEQA 747
Query: 464 PPAEGA 469
AE
Sbjct: 748 DGAENQ 753
Score = 41.7 bits (98), Expect = 0.001
Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPP--AEGAP----PAEGAPPAEGAPP 392
+ P+P+ + P P G P P A G P A A AP
Sbjct: 640 KTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPR 699
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
G P G PP + P A AP + + AP P P A AE
Sbjct: 700 PGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPP---EPEPPGAEQADGAENQ 753
Score = 29.8 bits (67), Expect = 3.7
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP---AEGAPAPPADAPPAEP 489
G P + A P G P G A P A G P P A
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693
Query: 490 APPAEAPPAESA 501
AP A P
Sbjct: 694 APQAPRPGGPPG 705
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 52.8 bits (126), Expect = 3e-07
Identities = 40/128 (31%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
P GA G+ A P G +G PA G + APA PA P+
Sbjct: 373 PSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSP 432
Query: 415 GAPPAEAPP-PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
P +APP P AP E +P P GAP A + APP G P+
Sbjct: 433 RVPWDDAPPAPPRSGIPPRPAPRMPEASPVP---GAP----DSVASASDAPPTLGDPSDT 485
Query: 474 AEGAPAPP 481
AE P+ P
Sbjct: 486 AEHTPSGP 493
Score = 50.8 bits (121), Expect = 1e-06
Identities = 46/150 (30%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
GG P G A A P G +G PA G P+ AP PA
Sbjct: 376 GGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAP---------ATPAP 426
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
AP+P P + APPA PP G P APR A P
Sbjct: 427 SAAPSPRV----PWDDAPPA---PPRSGI----------------PPRPAPRMPEASPVP 463
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
GAP A + APP G P+ A+ P+ P
Sbjct: 464 GAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
Score = 48.5 bits (115), Expect = 6e-06
Identities = 49/134 (36%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
P E P+ G A AEG PA+ GA P G +G PA P+ AP
Sbjct: 367 PVESLRPSGGGASAPSGSAAEG-PASGGAATIPTPGTQGPQGTAPAAGMTPSSAAP---A 422
Query: 434 APAPAEG-APAPPAEGAPRAEGAPPAEGAPAPPAEGAP-APPAEGAP---APPADAPPAE 488
PAP+ +P P + AP A PP G P PA P A P GAP A +DAPP
Sbjct: 423 TPAPSAAPSPRVPWDDAPPA---PPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTL 479
Query: 489 PAPPAEAPPAESAP 502
P A S P
Sbjct: 480 GDPSDTAEHTPSGP 493
Score = 41.2 bits (96), Expect = 0.001
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 427 GAPAAEGAPAPAEGAPAP-PAEGAPRAEGAPPAEG-APAPPAEGAPAPPAEGAPAPPADA 484
AP+ A PA G A P G +G PA G P+ A PAP A +P P D
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 485 PPAEPAPPAEAPPAESAPA 503
P PAPP P AP
Sbjct: 439 AP--PAPPRSGIPPRPAPR 455
Score = 38.5 bits (89), Expect = 0.008
Identities = 41/113 (36%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAP--PAEGAPPAEGAPPAEGAPPAEGAPA 398
G P+G APA G P+ AP A AP A +P P + APPA PP G PP
Sbjct: 401 GTQGPQGTAPAAGMTPSSAAP-ATPAPSAAPSPRVPWDDAPPA---PPRSGIPP------ 450
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
PAP P GAP + A A AP G P+ A PR
Sbjct: 451 ---RPAPRMPEASPVPGAPDSVA--SASDAPPTLGDPS----DTAEHTPSGPR 494
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 53.2 bits (128), Expect = 3e-07
Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 6/206 (2%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
E E + ++EELE + + +R R+EE + E K+K +
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEK----IEALK 336
Query: 73 AEELKREQERRALERKR-VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131
E +RE LE+ ++E E ++ +E+ +L + + + LEA E+
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Query: 132 REIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKK 191
E+ EI L +++ L + + + +++ + E + +LQ + E N + +
Sbjct: 397 NELEELKREIESLEERLERLSER-LEDLKEELKELEAELEELQTELEELNEELEELEEQL 455
Query: 192 REFSMEDAEKEKKPEWVKEPESKKKR 217
E E E++ ++E + ++
Sbjct: 456 EELRDRLKELERELAELQEELQRLEK 481
Score = 43.2 bits (102), Expect = 3e-04
Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 18/216 (8%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLL------RKKAAEEL 76
E +LEELE + E++ R+EE E KL+ + R+ EEL
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELES----LEEALAKLKEEIEELEEKRQALQEEL 795
Query: 77 K--REQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREI 134
+ E+ A R ++ + + E EI +L + I LE EL+ E+
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEEL----EEEIEELEEKLDELEEEL 851
Query: 135 MLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREF 194
+ E+ EL +++ +L + + ++ + E + +L+++ E + ++ E
Sbjct: 852 EELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELRELE-SELAELKEEIEK 909
Query: 195 SMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESA 230
E E+ + E E + + E +
Sbjct: 910 LRERLEELEAKLERLEVELPELEEELEEEYEDTLET 945
Score = 39.7 bits (93), Expect = 0.003
Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
Query: 14 EAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
EA E+E K LK L LE E+RR++EE R+ + E L + +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE---LERQLEELKRELAALEEELEQLQ 736
Query: 72 AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEY----WQRIYNLEAIK 127
+ E E+ E + ER E ++ + E+ + L +E +R E ++
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796
Query: 128 YELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLK 187
EL+ E+ + + L +++ L + R +++ + E + +L++K E +L+
Sbjct: 797 -ELEEELEEAERRLDALERELESLEQRRERLE-QEIEELEEEIEELEEKLDE--LEEELE 852
Query: 188 AVKKREFSMEDAEKEKK 204
++K +++ +E +
Sbjct: 853 ELEKELEELKEELEELE 869
Score = 39.3 bits (92), Expect = 0.005
Identities = 38/205 (18%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQER 82
E LE LE E+ +++E+ K ER ++L+ LR+ L + +
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEK-----AERYQELKAELRELELALLLAKLKE 236
Query: 83 RALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEIT 142
E + + +E ++ +++ E+ +E + I L++ EL E+ E+
Sbjct: 237 LRKELEELEEELSRLEEELEELQEEL-----EEAEKEIEELKSELEELREELEELQEELL 291
Query: 143 ELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFR-SQLKAVKKREFSMEDAEK 201
EL +++ +L G+ + +++ + EN+ +L+++ E + LK + ++ + +
Sbjct: 292 ELKEEIEELEGEISL-LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350
Query: 202 EKKPEWVKEPESKKKRIPIPEPEPE 226
+ E + E ++++ E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELE 375
Score = 35.8 bits (83), Expect = 0.063
Identities = 40/204 (19%), Positives = 86/204 (42%), Gaps = 11/204 (5%)
Query: 1 MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPER 60
+ A A+ E + +A + +LEELE + E RR++
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES------LE 820
Query: 61 KKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRI 120
+++ RL + EE E E + E + ++E + + +E+ +E +
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEE-LEKELEELKEELEELEAEKEELEDEL 879
Query: 121 YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF 180
LE K EL+ E+ + E+ EL +++ LR + + K+ + E + +L+++ E
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEE-LEAKLERLEVELPELEEELEEE 938
Query: 181 NFRSQLKAVKKREFSMEDAEKEKK 204
+ +++ +E E+E +
Sbjct: 939 YEDTLETELERE---IERLEEEIE 959
Score = 35.1 bits (81), Expect = 0.093
Identities = 35/208 (16%), Positives = 89/208 (42%), Gaps = 18/208 (8%)
Query: 18 ASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELK 77
E+E RL+ EELE + E+ +E + ++LR L + E L+
Sbjct: 242 EELEEELSRLE-EELEELQEELEEAEKEIEELK--------SELEELREELEELQEELLE 292
Query: 78 REQERRALERK-RVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIML 136
++E LE + ++ ER E ++ + E+ + +L ++ LE + L E+
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE-TLLEELEQ 351
Query: 137 KDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNF-----RSQLKAVKK 191
E+ E +++ + + + + + A+L+ + AE + +++++++
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Query: 192 R--EFSMEDAEKEKKPEWVKEPESKKKR 217
R S + +++ + ++ + +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQT 439
Score = 28.9 bits (65), Expect = 9.0
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 7/132 (5%)
Query: 8 AAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL 67
AE AE A E E + ++E LE + + R+E+ + + + E ++ L
Sbjct: 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLED---LKEELKELEAELEELQTEL 441
Query: 68 LRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK 127
E EQ +R + ++ E ++ E E+ R+ LEA +
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL----SSLEARLDRLEAEQ 497
Query: 128 YELDREIMLKDF 139
+ +
Sbjct: 498 RASQGVRAVLEA 509
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 52.6 bits (126), Expect = 3e-07
Identities = 25/128 (19%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
PA + AP P P P AP A A P P E PP
Sbjct: 382 PSPAGSPDVKKKAPE-----PDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPV 436
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPA---PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P +P A A G P +G + P + A
Sbjct: 437 ARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTGVF 496
Query: 477 APAPPADA 484
+
Sbjct: 497 EGVAELEK 504
Score = 51.9 bits (124), Expect = 6e-07
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
AP PA + AP P P P P AP A A P AP P E P P
Sbjct: 381 APSPAGSPDVKKKAPEPD--LPQPDRHPGPAKPEAPGARPAELPSPASAPTP--EQQP-P 435
Query: 481 PADAPPAEPAPPAEAPPAES 500
A + P P+P A AP +
Sbjct: 436 VARSAPLPPSPQASAPRNVA 455
Score = 46.9 bits (111), Expect = 2e-05
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAP-PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
AP+P A P + AP + P P PA AP A A P AP E
Sbjct: 374 VRNDGGVAPSP-AGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG-ARPAELPSPASAPTPE 431
Query: 454 GAPP-AEGAPAPPAEGAPAPPAEGAPAPPAD 483
PP A AP PP+ A AP + P D
Sbjct: 432 QQPPVARSAPLPPSPQASAPRNVASGKPGVD 462
Score = 39.9 bits (93), Expect = 0.003
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 153 GKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPE 212
G + +++ + K K E+ FR +L ++ E D P P+
Sbjct: 332 GGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSP--AGSPD 389
Query: 213 SKKKRIPIPEPEPE-------PESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPE 265
KKK P+P+ PE+ + PE + P P PP P+
Sbjct: 390 VKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQAS 449
Query: 266 PPVEE 270
P
Sbjct: 450 APRNV 454
Score = 39.5 bits (92), Expect = 0.004
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE-PAPPAEA 495
G PA + AP + P P PA P P PA P P +
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPD-LPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQP 434
Query: 496 PPAESAP 502
P A SAP
Sbjct: 435 PVARSAP 441
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 52.8 bits (127), Expect = 3e-07
Identities = 40/279 (14%), Positives = 60/279 (21%), Gaps = 13/279 (4%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
E + A P G + + P P + P+P
Sbjct: 67 ETAKLSAAVRYNQNA-PGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPS- 124
Query: 286 LWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKP 345
LW + P K + + + Q + P+P
Sbjct: 125 LWGTAPKPEPQPPQAP---------ESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQP 175
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPA-EGAPPAEGAPAAEGAP 403
+ G PP + A P +G P P P + P AP A
Sbjct: 176 PQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
P P P P + P + PP + P P
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP 295
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P P P + +
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREA 334
Score = 50.9 bits (122), Expect = 1e-06
Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 24/263 (9%)
Query: 249 EQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEK 308
+ P + SP E ++++P I DL +
Sbjct: 73 AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYE----------ASTDPEYIPDL--Q 120
Query: 309 LMSAV---SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEG 365
++ + P+P + + Q ++ E E + P PP +
Sbjct: 121 PDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEV-EAQLQQRQQAPQLPQPPQQV 179
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGA---PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
P G PP + A P +G P PP + PA PA+ P + P
Sbjct: 180 LPQ--GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP 237
Query: 423 PPAEGAPAAEGAPAPAEGAPAPP--AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
P ++ P PP + P A+ P P P
Sbjct: 238 QQP-PPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296
Query: 481 PADAPPAEPAPPAEAPPAESAPA 503
P P + + P
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQ 319
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/174 (15%), Positives = 39/174 (22%), Gaps = 10/174 (5%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP------- 392
GGE A + ++ A P
Sbjct: 65 GGETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPS 124
Query: 393 ---AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P + AP ++ P + AP + +G
Sbjct: 125 LWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGM 184
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P + A P +G P P P P PA PA+ P P
Sbjct: 185 PPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 52.1 bits (126), Expect = 4e-07
Identities = 49/164 (29%), Positives = 53/164 (32%), Gaps = 53/164 (32%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP--------------- 437
A GA AA APA A A AP A PA A AA G
Sbjct: 77 AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVI 136
Query: 438 ----AEG--------------------APAPPA---------EGAPRAEGAP-----PAE 459
G P+P A G + G+ A
Sbjct: 137 EWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
APA A A A PA A A PA AP A AP A AP A +AP
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPG 240
Score = 47.5 bits (114), Expect = 1e-05
Identities = 43/160 (26%), Positives = 48/160 (30%), Gaps = 43/160 (26%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA---------------- 430
A GA A APAA APA A P A PA A A G
Sbjct: 77 AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVI 136
Query: 431 ----AEGAPAPAEGA-------------PAPPA---------EGAPRAEGAPPAEGAPAP 464
G + + P+P A G + G+ A
Sbjct: 137 EWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196
Query: 465 PAEGAPAPPAEGAPAP-PADAPPAEPAPPAEAPPAESAPA 503
A A A PA APA A AP PA A A A A
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Score = 47.1 bits (113), Expect = 2e-05
Identities = 54/192 (28%), Positives = 58/192 (30%), Gaps = 42/192 (21%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
G+ + G A A A A A A A AP A PA A AA G
Sbjct: 61 KVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVV 120
Query: 405 P---P---------------AEGPPPAEGAPPA---------EAPPPA----------EG 427
P G E E P P G
Sbjct: 121 EVKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVG 180
Query: 428 APAAEGAP-APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
+ G+ E A A PA A A AP A A AP APAP A APA A A
Sbjct: 181 DKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAP----APAPAAAAAPAAAAPAAA 236
Query: 487 AEPAPPAEAPPA 498
A P A PA
Sbjct: 237 AAPGKAPHASPA 248
Score = 41.3 bits (98), Expect = 0.001
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A PA A A A A A APAP A A PA AP A A P ++ A
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245
Score = 38.7 bits (91), Expect = 0.007
Identities = 53/189 (28%), Positives = 57/189 (30%), Gaps = 58/189 (30%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA---------- 393
+ G A A AP A AP A A PA AP A A G
Sbjct: 76 EAAGAAAAAAAPAAAAAPAAAAAAA---PAPAAAAPAAAAAAAGGGVVEVKVPDIGEITE 132
Query: 394 -----------------------EGAPAAEGAPAPPA---------EGPPPAEGAPPAEA 421
E A P+P A G + G+
Sbjct: 133 VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVI 192
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
A AA APA APA A AP APAP A APA A A A P
Sbjct: 193 EVAAAAPAAA---AAPAAAAPAAAAAAAP----------APAPAAAAAPAAAAPAAAAAP 239
Query: 482 ADAPPAEPA 490
AP A PA
Sbjct: 240 GKAPHASPA 248
Score = 38.7 bits (91), Expect = 0.008
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A A A A A PA A A APA A A PA A A A
Sbjct: 193 EVAAAAPAAAAAPAAAAPAA-AAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245
Score = 38.3 bits (90), Expect = 0.010
Identities = 18/43 (41%), Positives = 18/43 (41%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
E A A A APA A A A A PA AP A A A
Sbjct: 76 EAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGG 118
Score = 33.6 bits (78), Expect = 0.25
Identities = 17/45 (37%), Positives = 18/45 (40%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G E A A A APA A A A PA A A +A A
Sbjct: 68 VGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAA 112
Score = 32.1 bits (74), Expect = 0.76
Identities = 18/49 (36%), Positives = 18/49 (36%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
E P A A PA A A PA A PA AP A AP
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241
Score = 28.6 bits (65), Expect = 8.0
Identities = 32/177 (18%), Positives = 44/177 (24%), Gaps = 32/177 (18%)
Query: 246 PEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT---------PNPEEL-------WLY 289
P P P P + P+ E+ WL
Sbjct: 81 AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVIEWL- 139
Query: 290 LKDTVSASNPVSIDDLVEKLMS--AVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEG 347
V + V D + + + A P P+ V + ++ G+ G
Sbjct: 140 ----VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV---------GDKVSVG 186
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
A A A A A AP A A A A A AA G
Sbjct: 187 SLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 51.2 bits (123), Expect = 5e-07
Identities = 26/130 (20%), Positives = 36/130 (27%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
EG P G P E A+ A P + P + P P+
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ + + AP+ P P +P P P PP + P P
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263
Query: 490 APPAEAPPAE 499
A AP
Sbjct: 264 ASATPAPIGG 273
Score = 50.1 bits (120), Expect = 1e-06
Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 5/135 (3%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
EG P G P E + + + A+ A A+ P + G P P
Sbjct: 144 EGEDPNPGPPLDEEDE--DADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP 201
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
+ P P AP+ + PP+ +P PP AP PP P +
Sbjct: 202 EDPSSPSDSSLP---PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258
Query: 478 PAPPADAPPAEPAPP 492
P PP+ + P
Sbjct: 259 PTPPSASATPAPIGG 273
Score = 41.6 bits (98), Expect = 5e-04
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
EG P G P E P +A P + + P+PP +
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+ ++ + P PAP + + PP +P +PP PA P P + P
Sbjct: 204 PSSPSDSSLP----PAPSSFQSDTPP-PSPESPTNPSPPPGPAAPPPPPVQQVPP 253
Score = 39.7 bits (93), Expect = 0.002
Identities = 26/139 (18%), Positives = 40/139 (28%), Gaps = 14/139 (10%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+ + +A P + P + + P + P E
Sbjct: 154 LDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFP----------SPPED 203
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
+P PPA + ++ PPP+ +P P P PP + P A P
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT--- 260
Query: 462 PAPPAEGAPAPPAEGAPAP 480
P A PAP
Sbjct: 261 -PPSASATPAPIGGITLDD 278
Score = 39.7 bits (93), Expect = 0.003
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 2/122 (1%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
+E + + A + P +P P P +
Sbjct: 155 DEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP 214
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
AP++ + PP P +PP P P + P + P PP+ A A
Sbjct: 215 APSSFQSDTPPPSPESPTNPSPPPGPAAPPP--PPVQQVPPLSTAKPTPPSASATPAPIG 272
Query: 456 PP 457
Sbjct: 273 GI 274
Score = 38.1 bits (89), Expect = 0.008
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPA-PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
EG P PP E A+ A P A+ A + PP+ P P
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203
Query: 473 PAEGAPAPPADAPPA-EPAPPAEAPPAESAPA 503
P+ + + AP + + P +P + + P+
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPS 235
Score = 36.2 bits (84), Expect = 0.029
Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 11/149 (7%)
Query: 290 LKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEA 349
LK+ + +D+ E A + + + + G P
Sbjct: 142 LKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP 201
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
+P PPA + ++ PP+ +P PP AP P PP +
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAP-----------PPPPVQQ 250
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
PP A P A AP
Sbjct: 251 VPPLSTAKPTPPSASATPAPIGGITLDDD 279
Score = 36.2 bits (84), Expect = 0.031
Identities = 20/119 (16%), Positives = 28/119 (23%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
+ AD A + PP+ P E + +
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
+P PPP APP A+ P A PAP +
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDD 279
Score = 35.0 bits (81), Expect = 0.077
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 199 AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP 258
A KE + P ++ S D + +P P P V P
Sbjct: 141 ALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPG-EDADPASASPSDPPSSSPGVPSFPS 199
Query: 259 PPEPEPEPPVEEIPPTPPSPVTPNP 283
PPE P +PP P S + P
Sbjct: 200 PPEDPSSPSDSSLPPAPSSFQSDTP 224
Score = 30.0 bits (68), Expect = 2.6
Identities = 14/88 (15%), Positives = 23/88 (26%)
Query: 214 KKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPP 273
K+ P P P + E + + + + PP P P
Sbjct: 143 KEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE 202
Query: 274 TPPSPVTPNPEELWLYLKDTVSASNPVS 301
P SP + + +P S
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPPSPES 230
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 51.4 bits (124), Expect = 6e-07
Identities = 41/139 (29%), Positives = 46/139 (33%), Gaps = 5/139 (3%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPPAEGAPAAEGAPAPPA 407
AP GA A G A G A A A A A GA AA GA + +
Sbjct: 266 APQLGAGAAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYS 325
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG--APRAEGAPPAEGAPAPP 465
G GA A A A +P A + AE + GA G
Sbjct: 326 AGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGA 385
Query: 466 AEGAPAPPAEGAPAPPADA 484
A A A A A PPA A
Sbjct: 386 AAAAAAGAA--AAGPPAWA 402
Score = 47.6 bits (114), Expect = 9e-06
Identities = 36/128 (28%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
G A A A A A A GA A GA A A A G+ AA A
Sbjct: 283 GAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAA--GVAAG 340
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
G A A A +P A AE + GA G A A
Sbjct: 341 LGG--------VARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAG 392
Query: 467 EGAPAPPA 474
A PPA
Sbjct: 393 AAAAGPPA 400
Score = 32.6 bits (75), Expect = 0.51
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A A A G A A A A A R GA A GA + + GA A
Sbjct: 285 AVAAAAGAGLAAGGGAAAAGGAAAAARG-GAAAAGGASSAYSAGAAGGSGAAGVAAGL-G 342
Query: 485 PPAEPAPPAEAPPAESA 501
A A A P A
Sbjct: 343 GVARAGASAAASPLRRA 359
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 51.6 bits (123), Expect = 9e-07
Identities = 39/148 (26%), Positives = 45/148 (30%), Gaps = 3/148 (2%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
+P P + P A APP PA A AA G
Sbjct: 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA 734
Query: 404 APPAEGP---PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
PPA P P AP PP A A A AP P PP + P + P
Sbjct: 735 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAP 794
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAE 488
P PP + P A P P +
Sbjct: 795 TPQPPPQAGPTSMQLMPRAAPGQQGPTK 822
Score = 46.6 bits (110), Expect = 3e-05
Identities = 41/155 (26%), Positives = 45/155 (29%), Gaps = 7/155 (4%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
G P + +P P PP P P P PA P
Sbjct: 670 GHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAATGRARP 726
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA- 471
AP PP A A A AP P A G R A P P PP + PA
Sbjct: 727 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAP 786
Query: 472 ---PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P PP A P A P + P
Sbjct: 787 QQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT 821
Score = 42.4 bits (99), Expect = 6e-04
Identities = 37/137 (27%), Positives = 43/137 (31%), Gaps = 1/137 (0%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
P PP P + G P + +P P P + P A P
Sbjct: 649 PTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPA 708
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP-PADAPP 486
AP A A P AP P A A P AP A AP A P
Sbjct: 709 APPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPA 768
Query: 487 AEPAPPAEAPPAESAPA 503
A P P PP ++ PA
Sbjct: 769 AAPGAPTPQPPPQAPPA 785
Score = 38.5 bits (89), Expect = 0.010
Identities = 62/287 (21%), Positives = 80/287 (27%), Gaps = 17/287 (5%)
Query: 223 PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
P P P + P Q P+ P P P P+ P+P P
Sbjct: 596 PWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPP 655
Query: 283 PEELWLYLKDTVSAS----NPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
E+ Y P + T QP ++
Sbjct: 656 QVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTP------MRPPAA 709
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G + A PPA A A G A P PPA A A
Sbjct: 710 PPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 769
Query: 399 AEGAPAP--PAEGPPPAEGAP---PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
A GAP P P + PP + P P PPP G + + P A G P + +
Sbjct: 770 APGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLL 829
Query: 454 GAPPAEGAPAP--PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G P+ PA A P+P + P PP
Sbjct: 830 TGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPV 876
Score = 28.9 bits (64), Expect = 9.0
Identities = 37/159 (23%), Positives = 43/159 (27%), Gaps = 12/159 (7%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
A AP P P PP + E + P + P P P
Sbjct: 586 ASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNV 645
Query: 411 P--PAEGAPPAEAPPPAEG----APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P PP P + P+P P + AP PP P
Sbjct: 646 LVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMR 705
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P G PA A PPA AP PA
Sbjct: 706 PPAAPP-----GRAQRPAAATGRAR-PPAAAPGRARPPA 738
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 51.1 bits (123), Expect = 9e-07
Identities = 55/243 (22%), Positives = 72/243 (29%), Gaps = 27/243 (11%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
P A + TP PP + P VP P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428
Query: 268 VEEIPPTPPSPVTPNPEELW------LYLKDT----VSASNPVSIDD------LVEKLMS 311
PPS N EELW L L T + VS+D + +
Sbjct: 429 PANAANAPPS---LNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAVSPNWLG 485
Query: 312 AVSATPQPLLKSVVKDTL--RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA 369
V + +PLL+ L + + E G A PP + +PP P
Sbjct: 486 MVQSR-KPLLEQAFAKVLGRSIKLNLESQSGSASN-----TAKTPPPPQKSPPPPAPTPP 539
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
P A PP PP + APA A + P P P + P E
Sbjct: 540 LPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDK 599
Query: 430 AAE 432
AA+
Sbjct: 600 AAK 602
Score = 45.7 bits (109), Expect = 4e-05
Identities = 43/232 (18%), Positives = 60/232 (25%), Gaps = 30/232 (12%)
Query: 225 PEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
P + A+ TP P P + P + P P+ E
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 285 ELWLYLKDTVSASNPVSIDDLVEK---------------LMS------------AVSATP 317
+A+N +L E L+S AV A
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAVS 480
Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPA---EGAPPAEGAPP 374
L V + + + G K E+ + A PP PPA P
Sbjct: 481 PNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPL 540
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
+ A P P A A + A P PPP P +P
Sbjct: 541 PQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/77 (22%), Positives = 24/77 (31%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
A+ PP + PP P P PP + + A +
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 470 PAPPAEGAPAPPADAPP 486
P P E P+P D+ P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594
Score = 37.6 bits (88), Expect = 0.016
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P A + A A PA PA +P PA P+ P +A P A A P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPK--TKQAATTPSPPPAKASPPIPVP 418
Query: 471 APPAEGAPAPPADAPPAEP 489
A P E +P PPA+A A P
Sbjct: 419 AEPTEPSPTPPANAANAPP 437
Score = 36.5 bits (85), Expect = 0.034
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A +E A A A P P +P P+ A PPA+ +P P A P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422
Query: 488 EPAPPAEAPPAESAP 502
EP+P A A + P
Sbjct: 423 EPSPTPPANAANAPP 437
Score = 36.1 bits (84), Expect = 0.041
Identities = 22/75 (29%), Positives = 30/75 (40%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
P+A + APA P + P + + + A P A A P PAE
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 489 PAPPAEAPPAESAPA 503
P P+ PPA +A A
Sbjct: 421 PTEPSPTPPANAANA 435
Score = 35.3 bits (82), Expect = 0.069
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
G+ + PP + PP P P A P P P + A A+
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 455 APPAEGAPAPPAEGAPAPP 473
+PP P P E P+P
Sbjct: 575 SPP----PPIPEEPTPSPT 589
Score = 35.3 bits (82), Expect = 0.073
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+ A PA P PP + A P+PP A P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKAS------PP 414
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPAD 483
PA P E +P PPA A APP+
Sbjct: 415 IPVPAEPTEPSPTPPANAANAPPSL 439
Score = 34.6 bits (80), Expect = 0.14
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
A A+ P P + PAP APP P PP + A
Sbjct: 517 ASNTAKTPP----PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572
Query: 481 PADAPPAEPAPPAEAPPAESAP 502
+ PP P P +P +S+P
Sbjct: 573 DSSPPPPIPEEPTPSPTKDSSP 594
Score = 33.4 bits (77), Expect = 0.34
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
+ A+ P + +P PPA PP + A P P P A A + A +
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 450 PRAEGAPPAEGAPAPP 465
P P E P+P
Sbjct: 578 P----PIPEEPTPSPT 589
Score = 32.6 bits (75), Expect = 0.51
Identities = 19/71 (26%), Positives = 20/71 (28%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
AP P PPA P A A P+ A A P P P
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426
Query: 420 EAPPPAEGAPA 430
P A AP
Sbjct: 427 TPPANAANAPP 437
Score = 32.2 bits (74), Expect = 0.61
Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
P A + A + PA P +PP + A P P A P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIPVP 418
Query: 427 GAPAAEGAPAPAEGAPAPP 445
P PA A APP
Sbjct: 419 AEPTEPSPTPPANAANAPP 437
Score = 32.2 bits (74), Expect = 0.66
Identities = 18/72 (25%), Positives = 19/72 (26%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
AP P PPA P A A P+PP P P P
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426
Query: 426 EGAPAAEGAPAP 437
A AP
Sbjct: 427 TPPANAANAPPS 438
Score = 31.9 bits (73), Expect = 1.0
Identities = 19/74 (25%), Positives = 26/74 (35%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ G+ + P PP + P PP A P PP A ++AP P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571
Query: 490 APPAEAPPAESAPA 503
A + PP P
Sbjct: 572 ADSSPPPPIPEEPT 585
Score = 30.7 bits (70), Expect = 2.1
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
+ A+ PP + +PP P P A P P P A A P
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 426 EGAPAAEGAPAPAE 439
E P+P +
Sbjct: 578 P-PIPEEPTPSPTK 590
Score = 30.3 bits (69), Expect = 3.1
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
A +E A A+ A PA P P AP + P + A P P P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPP-APIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 450 PRAEGAPPAEGAPAPP 465
PPA A APP
Sbjct: 422 TEPSPTPPANAANAPP 437
Score = 29.9 bits (68), Expect = 4.0
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
P A + A + PA P +P P + A +PPPA+ +P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA----PKTKQAATTPSPPPAKASPPIP 416
Query: 433 GAPAPAEGAPAPPAEGAPRAE 453
P E +P PPA A
Sbjct: 417 VPAEPTEPSPTPPANAANAPP 437
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 50.7 bits (121), Expect = 1e-06
Identities = 37/173 (21%), Positives = 45/173 (26%), Gaps = 11/173 (6%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
R + + E E +P A A A A P P + AE
Sbjct: 286 RGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAV-----KAEVAEV 340
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A + E P E A+ G A + A A E A
Sbjct: 341 TDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDA-----EAAS 395
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A P A A E P P + AP P P PAE
Sbjct: 396 AAPEEPAAL-ASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGI 447
Score = 37.7 bits (87), Expect = 0.013
Identities = 34/140 (24%), Positives = 37/140 (26%), Gaps = 3/140 (2%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP--APPAEGPPPAEGAPPAEAPP 423
AP AP A E P A A A P P + AEA
Sbjct: 275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVK 334
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAE-GAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
E A E P E + P AP A A A
Sbjct: 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAA 394
Query: 483 DAPPAEPAPPAEAPPAESAP 502
A P EPA A E+ P
Sbjct: 395 SAAPEEPAALASEAHDETEP 414
Score = 30.7 bits (69), Expect = 1.8
Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 312 AVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG 371
AV A + V +++ + A + + EA + P + A A A +
Sbjct: 332 AVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVD- 390
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
AE A A PAA + A P E A P P + A
Sbjct: 391 ---------------AEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVA 435
Query: 432 EGAPAPAEGAPA 443
PAE
Sbjct: 436 GPGDDPAEPDGI 447
Score = 29.9 bits (67), Expect = 3.4
Identities = 31/148 (20%), Positives = 37/148 (25%), Gaps = 35/148 (23%)
Query: 390 APPAEGAPAAEGAPAPPAEGPP---PAEGAPPAEAPPPAEGAPAAEGAPAPAE------- 439
AP AP A + PAE A A A + P G P +
Sbjct: 275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVK 334
Query: 440 ----------------------GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG- 476
G P E A+ G A A A AE
Sbjct: 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAA 394
Query: 477 --APAPPADAPPAEPAPPAEAPPAESAP 502
AP PA P ++AP
Sbjct: 395 SAAPEEPAALASEAHDETEPEVPEKAAP 422
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 50.5 bits (121), Expect = 2e-06
Identities = 47/206 (22%), Positives = 65/206 (31%), Gaps = 19/206 (9%)
Query: 295 SASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGE----AP 350
SA + + ++ AV A LL + + + EG K + P
Sbjct: 597 SAVTTAAASLADDDILDAVLAARDSLLSDLDALSPK--------EGDGKKSSADRKPKTP 648
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
APPA +P A + P + P A A A+ APAPP
Sbjct: 649 PSRAPPAS-LSKPASSPDASQTSASFDLDPDFELATHQSVPEA--ALASGSAPAPPPVPD 705
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P PP E P E A A +G AEG + E A +E + A P A
Sbjct: 706 P--YDRPPWEEAP--EVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAE 761
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAP 496
A A + +
Sbjct: 762 AQSPASTTALTQTSSEVQDTELNLVL 787
Score = 40.9 bits (96), Expect = 0.002
Identities = 32/142 (22%), Positives = 42/142 (29%), Gaps = 6/142 (4%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
P EG A PP+ P + P + + A A EA
Sbjct: 631 PKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEA 690
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
+ APA P P + PP E AP A P AEG + E A
Sbjct: 691 ALASGSAPAPPPVPDPYD---RPPWEEAPEVA---SANDGPNNAAEGNLSESVEDASNSE 744
Query: 482 ADAPPAEPAPPAEAPPAESAPA 503
A + + +PA
Sbjct: 745 LQAVEQQATHQPQVQAEAQSPA 766
Score = 31.6 bits (72), Expect = 1.1
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 386 PAEGAPPAEGAPAA-EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
PAE + P P+A A P P A PAE A+ A
Sbjct: 371 PAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAAN--AEA 428
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
AE AE A E A +E A AE A
Sbjct: 429 VAEADASAEPADTVEQALDDESELLAALNAEQA 461
Score = 31.6 bits (72), Expect = 1.3
Identities = 19/79 (24%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
PAE + P+ A P P+ A PAE E A A A
Sbjct: 371 PAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAE-KKTALTEQTTAQQQVQAANAEAV 429
Query: 484 APPAEPAPPAEAPPAESAP 502
A A PA+
Sbjct: 430 AEADASAEPADTVEQALDD 448
Score = 30.5 bits (69), Expect = 2.7
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 184 SQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETP 243
S L A+ +E + + ++KP K P S+ + +P P+++ ++ + +
Sbjct: 624 SDLDALSPKEGDGKKSSADRKP---KTPPSRAPPASLSKPASSPDASQTSASFDLDPDFE 680
Query: 244 LPPEGEQPPVEEV-------PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSA 296
L P PP P+P PP EE P + PN + A
Sbjct: 681 LATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDA 740
Query: 297 SNP 299
SN
Sbjct: 741 SNS 743
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 49.7 bits (118), Expect = 3e-06
Identities = 46/199 (23%), Positives = 69/199 (34%), Gaps = 5/199 (2%)
Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAP---PAEGAPPAEG- 365
++A S ++++ + Q + +ET +P+P EA P + A P+EG
Sbjct: 361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGK 420
Query: 366 -APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
A P + P + A+ A A A AE PP + + A
Sbjct: 421 TAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNE 480
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
+ + + P + P A PAE PP +GA PP D
Sbjct: 481 TDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDW 540
Query: 485 PPAEPAPPAEAPPAESAPA 503
A PA A E A A
Sbjct: 541 EHAAPADTAGGGADEEAEA 559
Score = 46.2 bits (109), Expect = 3e-05
Identities = 46/192 (23%), Positives = 61/192 (31%), Gaps = 7/192 (3%)
Query: 307 EKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAP--PAE 364
EK +A P+P ++ A+ +EG P + PP E AP
Sbjct: 386 EKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQT 445
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
A A+ + + PP + A AP P + P E
Sbjct: 446 AAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDE---A 502
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA--PPAEGAPAPPAEGAPAPPAEGAPAPPA 482
E A APA P P +GA PP + A PA+ A E A A
Sbjct: 503 VETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGI 562
Query: 483 DAPPAEPAPPAE 494
APP E
Sbjct: 563 GGNNTPSAPPPE 574
Score = 34.7 bits (79), Expect = 0.14
Identities = 44/216 (20%), Positives = 60/216 (27%), Gaps = 39/216 (18%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGE--QPPVEEVP---PPPEPEPEPPVEEIPPTPP 276
+P+P PE+ T + V+ +P EG+ P + PP E P+
Sbjct: 393 KPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQT 452
Query: 277 SPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHE 336
S K + S P V K+ +A+
Sbjct: 453 S-----------------------------AKSIQTASEAETPPENQVSKN----KAADN 479
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
ET+ + E P P E A A P P PP +GA
Sbjct: 480 ETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPP-P 538
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
APA A G E AP E
Sbjct: 539 DWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPE 574
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 49.4 bits (118), Expect = 3e-06
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA-PAPPAEGAPAPPAEGAPAPPADAPPAEP 489
A P+ A GAP P A AP APP A PA PA PAP A A A+P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440
Query: 490 APPAEAPPA 498
A A A
Sbjct: 441 AAAASAGDR 449
Score = 48.2 bits (115), Expect = 8e-06
Identities = 33/99 (33%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
GAP A P A APP APP A A A A PA P P A P
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP---- 433
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
PA PA A A +G PA GA
Sbjct: 434 ------PARSADPAAAASAGDRWRAFVAFVKGKKPALGA 466
Score = 46.3 bits (110), Expect = 3e-05
Identities = 31/77 (40%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
GAP AA GAP P A PP APP PPA A A PAPA PA A
Sbjct: 378 ERGAPA--PPSAAWGAPTPAAPAAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAAA 432
Query: 447 EGAPRAEGAPPAEGAPA 463
A A+ A A
Sbjct: 433 PPARSADPAAAASAGDR 449
Score = 45.9 bits (109), Expect = 4e-05
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
GAPAP A P P A APP AP P PA PA A A PA AP A
Sbjct: 378 ERGAPAPPSAAWGAPT---PAAPAAPPPAAAPPVP----PAAPARPAAARPAPAPAPPAA 430
Query: 491 PPAEAPPAESAPA 503
A A+ A A
Sbjct: 431 AAPPARSADPAAA 443
Score = 45.9 bits (109), Expect = 4e-05
Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA---PAAEGAPAPPAEGPPPA 413
GAP A P A APP APP A PA A PA APAPPA PPA
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP--APAPPAAAAPPA 435
Query: 414 EGAPPAEAPPPAEGAPAA 431
A PA A + A
Sbjct: 436 RSADPAAAASAGDRWRAF 453
Score = 44.7 bits (106), Expect = 9e-05
Identities = 23/69 (33%), Positives = 24/69 (34%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A P+A APP AP A PA A A PA P A PA AD
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440
Query: 485 PPAEPAPPA 493
A A
Sbjct: 441 AAAASAGDR 449
Score = 44.3 bits (105), Expect = 1e-04
Identities = 36/108 (33%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAE 394
E E G P P A P A APP APP PPA A PA P PA P A
Sbjct: 375 EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAA 431
Query: 395 GAPAAEGAPAPPAEGPPP-------AEGAPPAEAPPPAEGAPAAEGAP 435
PA PA A +G PA +G+P A
Sbjct: 432 APPARSADPAAAASAGDRWRAFVAFVKGKKPALGASLEQGSPLGVSAG 479
Score = 44.0 bits (104), Expect = 2e-04
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
GAP + PAA AP PA P PPA A A P APAP A AP
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARP----APAPAPPAAAAP 433
Query: 473 PAEGA-PAPPADAPPAEPA 490
PA A PA A A A
Sbjct: 434 PARSADPAAAASAGDRWRA 452
Score = 44.0 bits (104), Expect = 2e-04
Identities = 34/96 (35%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 388 EGAPPAEGAPAAE-----GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
+ A A GAP +E A A PP A P P A AP AP AP
Sbjct: 357 KMATLAPGAPVSELLDRLEALERGAPAPPSAAWGAPT---PAAPAAPPPAAAPPVPPAAP 413
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A PA P AP A APPA A A A
Sbjct: 414 ARPAAARPAP--APAPPAAAAPPARSADPAAAASAG 447
Score = 31.3 bits (71), Expect = 1.5
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 241 ETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIP-PTPPSPVTPNP 283
P P PP PP P P P P P P P P
Sbjct: 390 GAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 49.8 bits (118), Expect = 3e-06
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 9/217 (4%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
EE A E A+ A A+ +A K +K+A+ ++ EEA A K ++
Sbjct: 1480 EEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDE--RCGEPKDTDDMAEDEIGDLCQEYWQRI 120
+ + KK A+ELK+ +E + E K+ +E + E K+ +E + + +
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
Query: 121 YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF 180
L + ++ E K E +++ K KKV + + K A+ +KKA E
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
Query: 181 NFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKR 217
+ +K E + + E +KK E K+ E +K+
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 42.8 bits (100), Expect = 4e-04
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 26/245 (10%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
EE A E +A A DEAK+ K EE ++K +++ EEA A
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKK-KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
+ K A E K+E+ ++ + + E + + AE++ ++ +
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-----KKKADELKK 1412
Query: 123 LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF-- 180
A K + D E K+ + + KK ++ K + +KKA E
Sbjct: 1413 AAAAKKKAD-----------EAKKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 181 --NFRSQLKAVKKREFSMEDAEKEKKPEWVKEP--ESKKKRIPIPEPEPEPESATDASDV 236
+ + + KK + + + AE+ KK + K+ E+KKK + + A +A
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
Query: 237 EDGKE 241
E+ K+
Sbjct: 1519 EEAKK 1523
Score = 41.7 bits (97), Expect = 0.001
Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 17/244 (6%)
Query: 3 EETPAAAETPAEAAAASAEDEAKR-----LKLEELERKRAEVRRRMEEASGARRKKGFMT 57
EE A E +A A DEAK+ K +E ++K E +++ +EA A K
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK---- 1509
Query: 58 PERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYW 117
++ + + K A+E K+ +E + + + +E+ K D++ + E +E
Sbjct: 1510 -KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK----KKADELKKAEELKKAEEKK 1564
Query: 118 QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKA 177
+ EA K E D+ + L+ E + ++ + KK+ E K A+ K
Sbjct: 1565 KA---EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Query: 178 AEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVE 237
AE +++ + K + ++AE++KK E +K+ E + K E + E A + +
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Query: 238 DGKE 241
+E
Sbjct: 1682 KAEE 1685
Score = 40.9 bits (95), Expect = 0.002
Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 5/252 (1%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
+E A E AE+ K + + + ++AE ++ EEA K + ++ K
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
+K ++K E+ ++A E K+ +++ + + AE+ E +I
Sbjct: 1609 AEEA--KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK---AEEENKIKA 1663
Query: 123 LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNF 182
E K + + ++ + E ++ K KK + + K A+ +KKA E
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 183 RSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKET 242
+ +K E E E +KK E K+ E +KK+I + E E ++ + E E
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Query: 243 PLPPEGEQPPVE 254
L E E+ +E
Sbjct: 1784 ELDEEDEKRRME 1795
Score = 36.3 bits (83), Expect = 0.045
Identities = 48/237 (20%), Positives = 85/237 (35%), Gaps = 10/237 (4%)
Query: 14 EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
EA A +A+ +K E +K AE ++ EE + F R KA
Sbjct: 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
Query: 74 EELKREQERRALERKRVIDERCGEPKDTDDMAE---------DEIGDLCQEYWQRIYNLE 124
E K ++ ++A E+K+ + + E K D A+ DE +E ++ +
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
Query: 125 AIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRS 184
E + E + K KK + + K +KKA E
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 185 QLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKE 241
+ K + + D K+ K E+KKK + + + A +A ++ K+
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Score = 34.7 bits (79), Expect = 0.13
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 7/178 (3%)
Query: 9 AETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGA-----RRKKGFMTPERKKK 63
AE +A +E ++K E +K E +++ EEA A + + + K
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Query: 64 LRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNL 123
L+KK AEE K+ +E + E + I + + +D + E +E ++I +L
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
Query: 124 EAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFN 181
+ + + EI + + E D + + + KK+ + FA + + E N
Sbjct: 1763 KKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM--EVDKKIKDIFDNFANIIEGGKEGN 1818
Score = 34.0 bits (77), Expect = 0.26
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 20/218 (9%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
+E A AE A + +A+ + E +K+AE R+ EEA A + + +
Sbjct: 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAE 1149
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDE--RCGEPKDTDDMAEDEIGDLCQEYWQRI 120
+ + + AE+ ++ +E R E + + + E + +++ + E +
Sbjct: 1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE------ 1203
Query: 121 YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPI--LKKVSKYENKFAKLQKKAA 178
A K E +R + E K + + + V+ KK ++ K + +
Sbjct: 1204 ---AARKAEEER-------KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
Query: 179 EFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKK 216
F A R + AE+ +K + +K+ E KKK
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 48.4 bits (114), Expect = 5e-06
Identities = 63/177 (35%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
R+Q + + E +A A A + A AP + + A A AP
Sbjct: 174 RKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAA 233
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
APPA+ A A A A PA+ P A APP AP A+ A PA+ A P A
Sbjct: 234 APPAKAAAAPAKAAAAPAKAAAPP---AKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 290
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP---AEAPPAESAPA 503
P A+ A A A PA+ A AP AP A APPA+ A P A APPA++A A
Sbjct: 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
Score = 47.3 bits (111), Expect = 9e-06
Identities = 63/196 (32%), Positives = 78/196 (39%), Gaps = 5/196 (2%)
Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
L E+L + Q K+ ++ +R+ E + A A AP +
Sbjct: 155 LAEQLAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGK 214
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
+ A A AP APPA+ A A A APA A P A P A PP
Sbjct: 215 KSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAA---APAKAAAPPAKAAAPPAKAAAPP 271
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEG--APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A+ A A AP A APPA+ AP A PA+ A AP AP A PA A
Sbjct: 272 AKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA 331
Query: 483 DAPPAEPAPPAEAPPA 498
P APPA+A A
Sbjct: 332 TPPAKAAAPPAKAAAA 347
Score = 42.2 bits (98), Expect = 5e-04
Identities = 54/143 (37%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ P + A A A AP APPA+ A A A A A A
Sbjct: 207 KAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAK 266
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A PA A P A P A PPA+ A A A+ A APA+ A AP AP A+ A P
Sbjct: 267 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP 326
Query: 458 AEGAPAPPAEGAPAPPAEGAPAP 480
A PPA+ A APPA+ A AP
Sbjct: 327 PAKAATPPAKAA-APPAKAAAAP 348
Score = 41.1 bits (95), Expect = 0.001
Identities = 55/139 (39%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEGA--PPAEGAPPAEGAPA 398
K A A AP APPA+ A A AP APPA+ A P APPA+ A
Sbjct: 218 KAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAP 277
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A APPA+ P A A P A A+ A APA+ A P AP A+ A P
Sbjct: 278 PAKAAAPPAKAAAPPAKAAAA---PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP 334
Query: 459 EGAPAPPAEGAPAPPAEGA 477
A APPA+ A AP + A
Sbjct: 335 AKAAAPPAKAAAAPVGKKA 353
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 48.7 bits (116), Expect = 6e-06
Identities = 67/404 (16%), Positives = 111/404 (27%), Gaps = 43/404 (10%)
Query: 51 RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
R+KGF +K K A ++ E+E + + D D + IG
Sbjct: 1067 RQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVR-----GSDYDYLLSMAIG 1121
Query: 111 DLCQEYWQR--------IYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKK 162
L E Q +E +K + + LKD + E D K+
Sbjct: 1122 TLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLD----------KE 1171
Query: 163 VSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPE 222
+K E KLQ+ AA R + A KK + P+ ++ KK E
Sbjct: 1172 DAKAEEAREKLQRAAA----RGESGAAKKV--------SRQAPKKPAPKKTTKKAS---E 1216
Query: 223 PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
E E+ ++ + + P+G ++ P + + E +EI N
Sbjct: 1217 SETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEE--DEILDLKDRLAAYN 1274
Query: 283 PEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET-EGG 341
+ V + S + D + E + G
Sbjct: 1275 LDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKG 1334
Query: 342 EPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
KP PPA PA + A G P + +P
Sbjct: 1335 GRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFN 1394
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
+ + + E + A A
Sbjct: 1395 KKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRA 1438
Score = 36.8 bits (85), Expect = 0.030
Identities = 38/177 (21%), Positives = 53/177 (29%), Gaps = 8/177 (4%)
Query: 326 KDTLRRQASHEETEG--GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 383
K T ++ + E TE G E E A+ P A + AP A E
Sbjct: 1208 KKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLK 1267
Query: 384 APPAE---GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
A + PA+ A E A PA A P + + + A E
Sbjct: 1268 DRLAAYNLDSAPAQSAKMEETVKAVPAR--RAAARKKPLASVSVISDSDDDDDDFAV-EV 1324
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+ A + + A + A PPA PA +PA P
Sbjct: 1325 SLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISP 1381
Score = 34.5 bits (79), Expect = 0.16
Identities = 29/173 (16%), Positives = 47/173 (27%), Gaps = 5/173 (2%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
EE E + K A + PA+ A E A P + +
Sbjct: 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDD 1318
Query: 396 APAAEGAPAPPAE---GPPPAEGAPPAEAPPPA--EGAPAAEGAPAPAEGAPAPPAEGAP 450
A E + A + G PA A PP A + PA + PAE
Sbjct: 1319 DFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIG 1378
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ + +P + + + A ++ + A
Sbjct: 1379 ISPEKKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSA 1431
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 47.0 bits (112), Expect = 1e-05
Identities = 32/115 (27%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 336 EETEGGEPKPEGEA--PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
E T G+ P G+A A GA A A PA A E A+ A
Sbjct: 191 EVTTAGDLLPPGQAREQAQGAKSATAA-PATVPQAAPLPQAQPKKAATEEELIADAKKAA 249
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
G PAA A A E P + + A AEG P EG
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKL-AEGVTVTPVEG 303
Score = 46.2 bits (110), Expect = 3e-05
Identities = 24/109 (22%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
+ PP + A+GA A AP P E A+ A
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPAT---VPQAAPLPQAQPKKAATEEELIADAKKAATGE 252
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P A A AA+ P P + A A+ G A P
Sbjct: 253 PAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPV 301
Score = 45.1 bits (107), Expect = 6e-05
Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA-EGAPPAEGAPAAEGAPAPPAEG 409
D PP + A+GA A AP P A P A E A+ A E
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPAT--VPQAAPLPQAQPKKAATEEELIADAKKAATGEP 253
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
A A E P + A + A A+ + A P G
Sbjct: 254 AANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVEGG 304
Score = 44.7 bits (106), Expect = 7e-05
Identities = 24/106 (22%), Positives = 30/106 (28%), Gaps = 10/106 (9%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE----- 453
G PP + A+GA A A P + AP P E A+
Sbjct: 194 TAGDLLPPGQAREQAQGAKSATAAPAT----VPQAAPLPQAQPKKAATEEELIADAKKAA 249
Query: 454 -GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G P A A A E P + A A A +
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEG 295
Score = 42.4 bits (100), Expect = 4e-04
Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 6/113 (5%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
+ PP + A+GA + A PA A P A E A
Sbjct: 196 GDLLPPGQAREQAQGAKSATAA---PATVPQAAPLPQAQPKKAATEEELIADAKKAAT-- 250
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
G P A A A+ P P + A + A A + A P E
Sbjct: 251 -GEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVE 302
Score = 40.1 bits (94), Expect = 0.002
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG-------------APAPAEGAPAPP 445
AE A + A+G A PA GA E G PP
Sbjct: 142 AEIAQEVGQQANVSAKGDGGAAQSGPATGADGGEAYRDPFDPDFWSKQVEVTTAGDLLPP 201
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ +A+GA A APA + AP P A+ A + A+ A PA +A
Sbjct: 202 GQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAK 259
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 47.2 bits (113), Expect = 1e-05
Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 419 AEAPPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
A+ P P E EG P+P G PP G A A A A A P A A
Sbjct: 375 ADLPTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALA 434
Query: 478 PAPPADAPPAEPAPPAEAPPAESAPA 503
P A A A P PA AP
Sbjct: 435 AVPDAAAAAAAPPAPAAAPQPAVRLN 460
Score = 43.7 bits (104), Expect = 2e-04
Identities = 26/69 (37%), Positives = 26/69 (37%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
P G G A GAP A AP A A PA G PAA A P A A A
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448
Query: 417 PPAEAPPPA 425
P A P
Sbjct: 449 PAAAPQPAV 457
Score = 43.7 bits (104), Expect = 2e-04
Identities = 24/69 (34%), Positives = 25/69 (36%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
P G G A GAP A AP A A PA G P A A + A A A
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448
Query: 411 PPAEGAPPA 419
P A P
Sbjct: 449 PAAAPQPAV 457
Score = 43.0 bits (102), Expect = 3e-04
Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G PP G P PA A A APA G PA P A A
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAVPDA--AAA 442
Query: 458 AEGAPAPPAEGAPAPP 473
A PAP A PA
Sbjct: 443 AAAPPAPAAAPQPAVR 458
Score = 42.6 bits (101), Expect = 4e-04
Identities = 26/70 (37%), Positives = 27/70 (38%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
EG G G A GAP A AP A A PA G P A A + A A P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 398 AAEGAPAPPA 407
A AP P
Sbjct: 448 APAAAPQPAV 457
Score = 42.2 bits (100), Expect = 6e-04
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
+P G G A GAP A AP A A PA G P A A + A AA PAP
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449
Query: 406 PAEGPPPA 413
A P
Sbjct: 450 AAAPQPAV 457
Score = 41.4 bits (98), Expect = 9e-04
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
A+ P P E + PP+ G G P AP A AP A A PA G PA
Sbjct: 375 ADLPTPDEALRRLQEGPPSPGGGGG-GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAAL 433
Query: 467 EGAP-APPAEGAPAPPADAPPAEPAPP 492
P A A AP PA AP
Sbjct: 434 AAVPDAAAAAAAPPAPAAAPQPAVRLN 460
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/69 (34%), Positives = 24/69 (34%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
P G G A GAP A AP A A A G PA P A A A
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448
Query: 423 PPAEGAPAA 431
P A PA
Sbjct: 449 PAAAPQPAV 457
Score = 40.7 bits (96), Expect = 0.002
Identities = 22/80 (27%), Positives = 25/80 (31%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
P E + PP+ G A A AP A PA G P A +
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPD 438
Query: 427 GAPAAEGAPAPAEGAPAPPA 446
A AA PAPA
Sbjct: 439 AAAAAAAPPAPAAAPQPAVR 458
Score = 39.9 bits (94), Expect = 0.003
Identities = 24/80 (30%), Positives = 26/80 (32%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
P E + PP+ G A G P A AP A A PA G PAA A P
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPD 438
Query: 439 EGAPAPPAEGAPRAEGAPPA 458
A A A
Sbjct: 439 AAAAAAAPPAPAAAPQPAVR 458
Score = 39.5 bits (93), Expect = 0.004
Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
P E + P + G G A GAP A A P A A A G PA A A P
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA-LAAVP 437
Query: 445 PAEGAPRAEGAPPAEGAPAPP 465
A A A AP A PA
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVR 458
Score = 38.3 bits (90), Expect = 0.009
Identities = 23/70 (32%), Positives = 23/70 (32%)
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
P G P GAP A A A GA A A A A A A PPA
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450
Query: 416 APPAEAPPPA 425
A P A
Sbjct: 451 AAPQPAVRLN 460
Score = 38.0 bits (89), Expect = 0.013
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 327 DTLRR-QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
+ LRR Q GG P G A GAP A AP A A PA G P A A + A
Sbjct: 382 EALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAA 441
Query: 386 PAEGAPPAEGAPAAEGAPA 404
A P AP
Sbjct: 442 AAAAPPAPAAAPQPAVRLN 460
Score = 37.6 bits (88), Expect = 0.014
Identities = 17/69 (24%), Positives = 18/69 (26%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
+P G P G P A A A A A A A A A P
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451
Query: 455 APPAEGAPA 463
AP
Sbjct: 452 APQPAVRLN 460
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 47.1 bits (112), Expect = 2e-05
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 12/109 (11%)
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
+ + + PA P P+ A + +P + A P+ A
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSP------SQSSAAAQPSAPQSATQPA 421
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
G P P P P AP PA + P ++
Sbjct: 422 GTPPTVSVDPPAAVPVNPPSTAP------QAVRPAQFKEEKKIPVSKVS 464
Score = 45.2 bits (107), Expect = 8e-05
Identities = 22/110 (20%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
KP PA P+ A + +P A AP + A G PP P
Sbjct: 380 KPVFTQPAAAPQPSAAAAAS-PSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVP 436
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
P P A PA+ + + + P+ P
Sbjct: 437 VNPPSTAPQA--VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGN 484
Score = 42.8 bits (101), Expect = 3e-04
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE-GAPAPPAEGAPRAEGAPPAEGAPAP 464
+G + G P + P PAA P+ A +P+P A AP + PA
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P P P P + +
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 39.0 bits (91), Expect = 0.006
Identities = 21/119 (17%), Positives = 29/119 (24%), Gaps = 3/119 (2%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
+G + G P + P P A P A A + + + A P + A
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA---EGAPAPPAEGAPAPPAEGA 477
PP P A E + P AE A
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQA 481
Score = 38.6 bits (90), Expect = 0.008
Identities = 27/142 (19%), Positives = 33/142 (23%), Gaps = 18/142 (12%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
T+ G+ G P P P A AP A A +P A AP
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAA--APQPSAAAAASPSPSQSSAAAQPSAPQ----- 415
Query: 398 AAEGAPAPPAEGPPPAEGAP---PAEAPPPAEGAPAAEGAPAPAEGAPAP---PAEGAPR 451
A G PP PP+ A A E + G
Sbjct: 416 -----SATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPST 470
Query: 452 AEGAPPAEGAPAPPAEGAPAPP 473
+ AP
Sbjct: 471 LRPIQEKAEQATGNIKEAPTGT 492
Score = 31.3 bits (71), Expect = 1.5
Identities = 22/107 (20%), Positives = 28/107 (26%), Gaps = 10/107 (9%)
Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEG 377
Q + + Q S P A AP + A G PP P
Sbjct: 377 QHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAA 434
Query: 378 AP--PAEGAPPAEGAPPAEG----APAAEGAPAPPAEGP--PPAEGA 416
P P AP A + + + P P AE A
Sbjct: 435 VPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQA 481
Score = 30.1 bits (68), Expect = 3.6
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
P+ +P V+ P+ P P V P E +
Sbjct: 412 SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ--AVRPAQFKEEKKI 458
Score = 29.0 bits (65), Expect = 8.1
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 221 PEPEPEPESATDASDVE-DGKETPLPPEGEQPPVEEVPPPPEPEPEP-PVEEIPP-TPPS 277
P P+P +A AS P + PP P V PP T P
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445
Query: 278 PVTPNP 283
V P
Sbjct: 446 AVRPAQ 451
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 46.6 bits (111), Expect = 2e-05
Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
GAP A A A P A P PPA P PPA P PA A
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKP-----KAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 487 AEPAPPAEAPPAE 499
P P A A P E
Sbjct: 177 PPPTPVARADPRE 189
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
APPA A A + P P AP P A P PPA PP AP A+
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP---TPPAAAKPPEPAPAAKP 177
Query: 501 AP 502
P
Sbjct: 178 PP 179
Score = 43.5 bits (103), Expect = 2e-04
Identities = 28/79 (35%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 383 GAPPAE----GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
GAP +E GAPPA AA A A P A PPA P A P
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTT--PEKPKAAAPTPEPPAASKPTPPAAAKPP 169
Query: 439 EGAPAPPAEGAPRAEGAPP 457
E APA P A P
Sbjct: 170 EPAPAAKPPPTPVARADPR 188
Score = 43.1 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 359 GAPPAE----GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
GAP +E GAPPA A A + P A P A P PPA PP
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171
Query: 415 GAPPAEAPPPAEGAPAAE 432
P P A E
Sbjct: 172 APAAKPPPTPVARADPRE 189
Score = 42.4 bits (100), Expect = 5e-04
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 415 GAPPAE-APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
GAP +E A A A A A P A PPA P PPA P P
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171
Query: 474 AEGAPAPP 481
A A PP
Sbjct: 172 APAAKPPP 179
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
P E GAPPA A A + P A PPA P PAA P
Sbjct: 113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPT---PPAAAKPP 169
Query: 404 APPAEGPPPAE 414
P PP
Sbjct: 170 EPAPAAKPPPT 180
Score = 38.9 bits (91), Expect = 0.005
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 448 GAPRAE----GAPPAEGAPAPPAEGAPAP----PAEGAPAPPADAPPAEPAPPAEAPPAE 499
GAP +E GAPPA A A A P AP P A P A PP
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171
Query: 500 SAPA 503
+ A
Sbjct: 172 APAA 175
Score = 38.5 bits (90), Expect = 0.006
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 365 GAPPAE----GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
GAP +E GAPPA A A + P A A P A P P A P E
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPT-PEPPAASKPTPPAAAKPPE 170
Query: 421 APPPAEGAPAAEGAPAPAE 439
P A+ P P E
Sbjct: 171 PAPAAKPPPTPVARADPRE 189
Score = 37.4 bits (87), Expect = 0.015
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
A A A A+ P A P PPA P PPA P PA A
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP----TPPAAAKPPEPAPAAKP 177
Query: 472 PP 473
PP
Sbjct: 178 PP 179
Score = 36.6 bits (85), Expect = 0.031
Identities = 14/61 (22%), Positives = 18/61 (29%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
A + K PE + PP +P PP PP P P P
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Query: 286 L 286
+
Sbjct: 182 V 182
Score = 36.6 bits (85), Expect = 0.031
Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 395 GAPAAE--GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
GAP +E APPA P A A + P A A PA P PPA P
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPT-PEPPAASKPTPPAAAKPPE 170
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAP 478
PAP A+ P P A P
Sbjct: 171 ---------PAPAAKPPPTPVARADP 187
Score = 36.2 bits (84), Expect = 0.033
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAE 400
E G PA A A + P A PPA P P A P E APAA+
Sbjct: 117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 401 GAPAPPAEGPPP 412
P P A P
Sbjct: 177 PPPTPVARADPR 188
Score = 35.8 bits (83), Expect = 0.045
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 353 GAPPAE----GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
GAP +E GAPPA A A + P A PPA P P A+
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPT----PPAAAK 167
Query: 409 GPPPAEGAPPAEAP 422
P PA A P P
Sbjct: 168 PPEPAPAAKPPPTP 181
Score = 35.4 bits (82), Expect = 0.061
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
P P +A A + E P P P P +PP E P P TP
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPP--EPAPAAKPPPTP 181
Score = 35.0 bits (81), Expect = 0.072
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
A A A A+ P A P P A P P A E PAPA
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPA----ASKPTPPAAAKPPE--PAPAA 175
Query: 440 GAPAPPAEGAPRAE 453
P P A E
Sbjct: 176 KPPPTPVARADPRE 189
Score = 32.7 bits (75), Expect = 0.46
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 197 EDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEV 256
A K ++ ++ P PEP +A P PP +PP E
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAA----------SKPTPPAAAKPP--EP 171
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTP 281
P +P P P P P++
Sbjct: 172 APAAKPPPTPVARADPRETRVPMSR 196
Score = 30.4 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 18/62 (29%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
A K E P AP E ++ PPA PP P A P
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADP 187
Query: 393 AE 394
E
Sbjct: 188 RE 189
Score = 29.7 bits (67), Expect = 3.9
Identities = 10/55 (18%), Positives = 12/55 (21%)
Query: 227 PESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
P S D + P P PTPP+ P
Sbjct: 114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKP 168
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/60 (18%), Positives = 11/60 (18%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
P A PPA P A PA PP
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179
Score = 28.5 bits (64), Expect = 9.0
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
V +S + P + + + P E PA P PPA
Sbjct: 110 EVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP----TPPAA 165
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAE 388
PP P A P E
Sbjct: 166 AKPPEPAPAAKPPPTPVARADPRE 189
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 46.2 bits (110), Expect = 2e-05
Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
PA APA P + P P P P AP++ A
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT------- 222
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
PA APA P AP P + + PA P A
Sbjct: 223 --PAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/91 (24%), Positives = 27/91 (29%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P PA A P ++ APA + +
Sbjct: 158 SGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANV 217
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A PA APA P AP P A + PA
Sbjct: 218 DTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG---APAPPAEGAPAPPADAPPAEP 489
APA P + P P APAP + A P++ A PA P
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228
Query: 490 APPAEAPPAESAPA 503
A P A P + A
Sbjct: 229 ATPDGAAPLPTDQA 242
Score = 39.2 bits (92), Expect = 0.004
Identities = 22/84 (26%), Positives = 25/84 (29%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
+ A A P + P P APA P A P A P PA A
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPA 229
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRA 452
AP P + A P A
Sbjct: 230 TPDGAAPLPTDQAGVSTPAADPNA 253
Score = 39.2 bits (92), Expect = 0.004
Identities = 21/85 (24%), Positives = 24/85 (28%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
P A PA AP + A AP+ A PA AP
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228
Query: 479 APPADAPPAEPAPPAEAPPAESAPA 503
A P A P + PA A
Sbjct: 229 ATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 37.7 bits (88), Expect = 0.010
Identities = 20/102 (19%), Positives = 25/102 (24%), Gaps = 6/102 (5%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
G+ P + P PA PA P + A +
Sbjct: 158 SGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV----VAPS 213
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
+ A P A P AP P A PA A
Sbjct: 214 QANVDTAATPAPAAPATPDGAAPLPT--DQAGVSTPAADPNA 253
Score = 36.9 bits (86), Expect = 0.018
Identities = 16/85 (18%), Positives = 18/85 (21%), Gaps = 5/85 (5%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
P PA PA + A P+ A A
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS----QANVDTAATPA 224
Query: 423 PPAEGAPAAEGA-PAPAEGAPAPPA 446
P A P P G P A
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTPAA 249
Score = 35.8 bits (83), Expect = 0.038
Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
P AP A + P P P A P+ A AP
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA----PSQANVDTAATPAP 225
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
A P A P AP P + + PA A
Sbjct: 226 AAP---------ATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 35.0 bits (81), Expect = 0.067
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
AE + + + P + + + A A P + P PA APAP + A
Sbjct: 152 AELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV-V 210
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
P++A PA P AP P + A P
Sbjct: 211 APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 47.0 bits (112), Expect = 2e-05
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 14/215 (6%)
Query: 10 ETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLR 69
E E E +L EL + ++ + ++E K + K+ L
Sbjct: 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKEL---EELKEEIEELEKELESLEGS 253
Query: 70 KKAAEELKREQERRALERK---RVIDERCGEPKDTDDMAED--EIGDLCQEYWQRIYNLE 124
K+ EE RE E R E K ++E+ E K+ + AE+ ++ + +EY + +E
Sbjct: 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313
Query: 125 AIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRS 184
L+ EI + I EL ++ L + KK+ + E + +L+++ +
Sbjct: 314 KRLSRLEEEINGIEERIKELEEKEERL-----EELKKKLKELEKRLEELEERHELYEEAK 368
Query: 185 QLKAVKKR-EFSMEDAEKEKKPEWVKEPESKKKRI 218
K +R + + EK + ++E E K+ I
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
Score = 40.4 bits (95), Expect = 0.002
Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 31/219 (14%)
Query: 19 SAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR 78
E++ K+ LEELE+K E + E+ + + + E +K L + E+
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566
Query: 79 EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDR------ 132
E E E + ++E E + E+ + +L + ++ L+ + EL+R
Sbjct: 567 ELEEELAELLKELEELGFESVEEL---EERLKEL-EPFYNEYLELKDAEKELEREEKELK 622
Query: 133 -----------EIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAE-F 180
E+ + + EL K++ +L K+ +YE + + + E
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEEEYEELREEYLELSRELA 676
Query: 181 NFRSQLKAVKK-REFSMEDAEKEKKPEWVKEPESKKKRI 218
R++L+ ++K RE + EK K E ++E E KK +
Sbjct: 677 GLRAELEELEKRREEIKKTLEKLK--EELEEREKAKKEL 713
Score = 35.4 bits (82), Expect = 0.073
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 14/205 (6%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQER 82
E + ++EELE K E++ E+A + F + + R EE E
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
Query: 83 RALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN-LEAIKYELDR-EIMLKDFE 140
R E + +ER E K E + +L E +Y +A K EL+R + L
Sbjct: 329 RIKELEE-KEERLEELKKKLKELEKRLEEL--EERHELYEEAKAKKEELERLKKRLTGLT 385
Query: 141 ITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFR-SQLKAVK------KRE 193
+L K++ +L K I +++SK + +L+K+ E +LK K RE
Sbjct: 386 PEKLEKELEELE-KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
Query: 194 FSMEDAEKEKKPEWVKEPESKKKRI 218
+ E+ KE E+ E + +K +
Sbjct: 445 LT-EEHRKELLEEYTAELKRIEKEL 468
Score = 30.4 bits (69), Expect = 3.0
Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 37/250 (14%)
Query: 8 AAETPAEAAAASAEDEAKRLKLEE-----------LERKRAEVRRRMEEASGARRK---- 52
TP + E E + ++EE L+++ E+++ +EE A+ K
Sbjct: 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVC 441
Query: 53 KGFMTPERKKKLR---LLLRKKAAEELKR--EQERRALERKRVID-ERCGEPKDTDDMAE 106
+T E +K+L K+ +ELK E+ER+ + R ++ E +
Sbjct: 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI---KL 498
Query: 107 DEIGDLCQEYWQRI--YNLEAIK-----YELDREIMLK-DFEITELGKQVNDLRG--KFV 156
E+ + +E +++ YNLE ++ YE +E ++K EI L K++ L K +
Sbjct: 499 KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
Query: 157 RPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKE--KKPEWVKEPESK 214
+ KK+ + E + A+L K+ E F S ++ +++R +E E + + KE E +
Sbjct: 559 AELEKKLDELEEELAELLKELEELGFES-VEELEERLKELEPFYNEYLELKDAEKELERE 617
Query: 215 KKRIPIPEPE 224
+K + E E
Sbjct: 618 EKELKKLEEE 627
Score = 30.0 bits (68), Expect = 3.4
Identities = 41/213 (19%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 28 KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALER 87
E + EV + ++ ++ + + R + EEL +E+E+ E
Sbjct: 159 DYENAYKNLGEVIKEIKR-------------RIERLEKFIKRTENIEELIKEKEKELEEV 205
Query: 88 KRVIDERCGEPKDTD---DMAEDEIGDLCQEYWQRIYNLEAIKYELDR-----EIMLKDF 139
R I+E E + + E E+ +L +E + I LE L+ E +++
Sbjct: 206 LREINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIREL 264
Query: 140 E--ITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFN------------FRSQ 185
E I EL K++ +L K LK++ + ++ KL + E+ +
Sbjct: 265 EERIEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
Query: 186 LKAVKKREFSMEDAE-KEKKPEWVKEPESKKKR 217
+ +++R +++ E KE++ E +K+ + ++
Sbjct: 323 INGIEER---IKELEEKEERLEELKKKLKELEK 352
Score = 29.3 bits (66), Expect = 6.2
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 21 EDEAKRLKLE---ELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELK 77
E+ K L E EL+R E++ E+ R++ + KK+ L+ K+ AE+LK
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK 506
Query: 78 REQER----------RALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK 127
+E+ + E + E+ + K + E+ L +E +++ LE
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKL 565
Query: 128 YELDREIMLKDFEITELG-KQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQL 186
EL+ E+ E+ ELG + V +L + LK++ + N++ +L K AE +
Sbjct: 566 DELEEELAELLKELEELGFESVEELEER-----LKELEPFYNEYLEL--KDAEKELEREE 618
Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKKRI 218
K +KK E ++ A +E E K E +K +
Sbjct: 619 KELKKLEEELDKAFEELA-ETEKRLEELRKEL 649
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 46.2 bits (109), Expect = 3e-05
Identities = 39/108 (36%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
P E + E P G PA PP + P A+ P P +G P E E P PA
Sbjct: 256 PYFEESKGYEPPPAPSGGSPA---PPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAG 312
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP-APPAEGAPAPP 473
AA G P P PAP A+ R EG P E PP PA P
Sbjct: 313 RDGAAGGEPKPGPPRPAPDAD---RPEGWPSLEAITFPPPTPATPAVP 357
Score = 40.8 bits (95), Expect = 0.001
Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
+ E PP G PA PP + P A+ P P E P E EG PA
Sbjct: 259 EESKGYEPPPAPSGGSPA---PPGDDRPEAKPEPGPVEDGA-PGRETGGEGEGPEPAGRD 314
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA--PPAESAPA 503
A E P PP PAP AD P P+ A PP + PA
Sbjct: 315 GAAGGEPKPGPPR---PAPDADRPEGWPSLEAITFPPPTPATPA 355
Score = 35.8 bits (82), Expect = 0.045
Identities = 43/128 (33%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 317 PQPLLKSVVKDTLRRQA-----SHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG 371
PQ K++V R EE++G EP P AP+ G+P G E P E
Sbjct: 235 PQEAHKAIVDYWFMRHGGVVPPYFEESKGYEPPP---APSGGSPAPPGDDRPEAKP--EP 289
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP----AEGAPPAEAPPPAEG 427
P +GAP E EG PA AA G P P P P EG P EA
Sbjct: 290 GPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPP 349
Query: 428 APAAEGAP 435
PA P
Sbjct: 350 TPATPAVP 357
Score = 35.0 bits (80), Expect = 0.094
Identities = 38/122 (31%), Positives = 41/122 (33%), Gaps = 2/122 (1%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
EA + P +GAP E EG PA A G P PA A EG
Sbjct: 279 GDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEGW 338
Query: 403 PAPPAEGPPPAEGAPPA--EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
P+ A PP A PA A P G A A A A A R GA P
Sbjct: 339 PSLEAITFPPPTPATPAVPRARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRRGAGPLPT 398
Query: 461 AP 462
Sbjct: 399 KE 400
Score = 30.0 bits (67), Expect = 3.1
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 219 PIPEPEPEPESATDASDVED---GKETPLPPEGEQPPVEEVPPPPEPEPEPP-------- 267
P P + PE+ + VED G+ET EG +P + EP+P PP
Sbjct: 275 PAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADR 334
Query: 268 ------VEEIPPTPPSPVTPNP 283
+E I PP+P TP
Sbjct: 335 PEGWPSLEAITFPPPTPATPAV 356
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 46.2 bits (109), Expect = 3e-05
Identities = 72/273 (26%), Positives = 97/273 (35%), Gaps = 21/273 (7%)
Query: 236 VEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVS 295
VE G + E + E P PEPE P E P P+P P +
Sbjct: 67 VEVGGVLAIIGEPGEAGSEPAPAAPEPEAAPE-PEAPAPAPTPAAEAPAPAAPQAGGSGE 125
Query: 296 ASNPVSIDDLVEKLMSA-VSATPQPLLKSVVKDTLRRQASHEETEGGEPKP------EGE 348
A+ V + +L E + V++ + + +V D + S ++ + P P E
Sbjct: 126 AT-EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIR 184
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
AP D G A A PAE PA +E AP AP PPA
Sbjct: 185 APEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHA-APDPPAP 243
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAP-----APAEGAPAPPAEGA------PRAEGAPP 457
P PA+ A PA A P + G P A +G +G + +
Sbjct: 244 APAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAA 303
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A+ A A A A AP A A PAEP
Sbjct: 304 AKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPD 336
Score = 41.5 bits (97), Expect = 0.001
Identities = 55/188 (29%), Positives = 61/188 (32%), Gaps = 36/188 (19%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-------PAEGAPA 398
GEA ++ AP A A AP PA AP A G+ P G
Sbjct: 79 PGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGESV 138
Query: 399 AEG-------APAPPAEGPPP----AEGAPPAEAPPPAEGAPAAEGAP------------ 435
EG A E P + E P P G AP
Sbjct: 139 TEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLA 198
Query: 436 --APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
A APA PAE A +E AP P A A P APAP PA+ A PA
Sbjct: 199 IIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPA----PAKTAAPA 254
Query: 494 EAPPAESA 501
A P S
Sbjct: 255 AAAPVSSG 262
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 45.7 bits (109), Expect = 4e-05
Identities = 22/50 (44%), Positives = 23/50 (46%)
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
E A A APA AE A A PA A A A PA AP A A + P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 42.2 bits (100), Expect = 5e-04
Identities = 22/46 (47%), Positives = 23/46 (50%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
EG A A APA AE A A PA A A A AP A +APA
Sbjct: 79 EEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA 124
Score = 41.8 bits (99), Expect = 6e-04
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 430 AAEG-APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
EG + + A APA AE A A A A A A PA APA PA A+
Sbjct: 78 LEEGESASDAGAAPAAAAE-------AAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAAD 130
Query: 489 PAPPA 493
P PA
Sbjct: 131 PDIPA 135
Score = 41.8 bits (99), Expect = 6e-04
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
EG A++ APA A A A A A + APAP A APA P PA
Sbjct: 79 EEGESASDAGAAPAAAAEAAAAA-PAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGT 137
Query: 485 P 485
Sbjct: 138 E 138
Score = 41.8 bits (99), Expect = 6e-04
Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
EG A A AP A AE A A PA A A + APAP A A PA P
Sbjct: 79 EEGESASDAGAAP----AAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Query: 498 A 498
A
Sbjct: 135 A 135
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/57 (36%), Positives = 23/57 (40%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
E A A AP A A A A A + APAP A P AE A + P E
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138
Score = 39.9 bits (94), Expect = 0.002
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
E+ A APAA A A A A A A +A AP A APA P PA
Sbjct: 82 ESASDAGAAPAAA-AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/51 (37%), Positives = 20/51 (39%)
Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
E A A AP A AA A A A AP A A P AE A +
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132
Score = 39.1 bits (92), Expect = 0.005
Identities = 21/50 (42%), Positives = 21/50 (42%)
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
E A A APAA A A A A A P A APAAE A P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 39.1 bits (92), Expect = 0.005
Identities = 17/53 (32%), Positives = 20/53 (37%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
EG A++ AP A A A A + APA APA A P
Sbjct: 79 EEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 38.7 bits (91), Expect = 0.007
Identities = 23/55 (41%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
E A A AP A A A A A A A A PA A PA PA A P A
Sbjct: 82 ESASDAGAAPAAA-AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 38.4 bits (90), Expect = 0.007
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
EG A A P A A AP A A A + APAPA A
Sbjct: 78 LEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAE 126
Score = 38.0 bits (89), Expect = 0.010
Identities = 23/54 (42%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP-AEGAPAPPA 446
E A A APA AE A A A A A APAA APA P PA
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 37.2 bits (87), Expect = 0.017
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 345 PEG-EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
PEG E P A E A A AP A A A A + APA
Sbjct: 62 PEGTEGVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPA 121
Query: 404 APPAEGPPPAE 414
AP AE +
Sbjct: 122 APAAEVAADPD 132
Score = 35.7 bits (83), Expect = 0.049
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
E A A AP A A AA A A A P PA A PA PA
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAA-PAPAAPAAPAAEVAADPDIPA 135
Score = 35.3 bits (82), Expect = 0.078
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
E A A AP A A A AP A A A+ A PA APAA A P
Sbjct: 82 ESASDAGAAPAAA-AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 34.9 bits (81), Expect = 0.084
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
E A A A P A A AA APA A A A A AP A AP AE A P
Sbjct: 82 ESASDAGAAPAAA-AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 34.9 bits (81), Expect = 0.099
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
EGE+ A A AP A A A A PA A A A PA A P
Sbjct: 80 EGES----ASDAGAAPAA--AAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDI 133
Query: 406 PAEGP 410
PA
Sbjct: 134 PAGTE 138
Score = 33.7 bits (78), Expect = 0.22
Identities = 22/59 (37%), Positives = 23/59 (38%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
EG G APA A A AP A A A+ A PA AP A A A G
Sbjct: 80 EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138
Score = 31.4 bits (72), Expect = 1.2
Identities = 7/55 (12%), Positives = 12/55 (21%)
Query: 230 ATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
+ D P + P P P + V +P+
Sbjct: 78 LEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132
Score = 29.9 bits (68), Expect = 3.3
Identities = 7/56 (12%), Positives = 11/56 (19%)
Query: 230 ATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
A + E + P P P P +P +
Sbjct: 75 AVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAAD 130
Score = 28.7 bits (65), Expect = 8.3
Identities = 14/50 (28%), Positives = 14/50 (28%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
E P A A A PA A A A PA A P
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 45.3 bits (107), Expect = 6e-05
Identities = 41/139 (29%), Positives = 48/139 (34%), Gaps = 10/139 (7%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE------GPPPAEGAPPAEAPPPAEGA 428
A A A A A A APA E A AP A +G A+ + A
Sbjct: 268 RAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAA 327
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE----GAPAPPAEGAPAPPADA 484
P AE A PAE APRA P + A + GA A A PA DA
Sbjct: 328 DKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARARDA 387
Query: 485 PPAEPAPPAEAPPAESAPA 503
+ P +A A
Sbjct: 388 AAPDADTPPGGASLAAAQA 406
Score = 43.7 bits (103), Expect = 1e-04
Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 6/147 (4%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
A A A A A A A PAE A A A A E A PA
Sbjct: 268 RAAAREARAAAAAPAATAA-AAAPAEEPAVAPMA--AIRAAHVETAADKGERAAKPAAAD 324
Query: 417 PPAEAPPPAEGA---PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
A+ P A A + A A A P + A A + GA A A PA
Sbjct: 325 KAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARA 384
Query: 474 AEGAPAPPADAPPAEPAPPAEAPPAES 500
+ A P A+A A++
Sbjct: 385 RDAAAPDADTPPGGASLAAAQARVADA 411
Score = 43.7 bits (103), Expect = 1e-04
Identities = 40/141 (28%), Positives = 43/141 (30%), Gaps = 4/141 (2%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
A A A A A A AP E A A A E A A A A+
Sbjct: 270 AAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADK 329
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P A A PAE AP A PA PA + P A A A PA + A
Sbjct: 330 PADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGA-SADAAARTPARARDAA 388
Query: 470 PAPPAEGAPAPPADAPPAEPA 490
A A A
Sbjct: 389 APDADTPPGGASLAAAQARVA 409
Score = 40.3 bits (94), Expect = 0.002
Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 10/159 (6%)
Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
LR E E + APA A A PAE A A
Sbjct: 260 LRSPERKERAAAREARAAAAAPAATA---AAAAPAEEPAVAPMAAIRAAHVETAADKGER 316
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
A PA AA+ P AE PAEA P A PA + A + A P A
Sbjct: 317 AAKPAAADKAADKPADRPDAAEKAAE--KPAEAAPRAADKPAGQAADPASSSADKPGA-- 372
Query: 449 APRAEGAPPA---EGAPAPPAEGAPAPPAEGAPAPPADA 484
+ A PA + A A A ADA
Sbjct: 373 SADAAARTPARARDAAAPDADTPPGGASLAAAQARVADA 411
Score = 39.1 bits (91), Expect = 0.005
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
+P + AA A A A A A PAE P AP A A E A A
Sbjct: 262 SPERKERAAAREARAAAAAPAATAAAAAPAEEP---AVAPMAAIRAAHVETAADKGERAA 318
Query: 450 PRAEGAPPAEGAPAPPAEGAPAP--PAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A+ P A PAE AP AD P + A PA + + +
Sbjct: 319 KPAAADKAADKPADRPDAAEKAAEKPAEAAPR-AADKPAGQAADPASSSADKPGAS 373
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 45.3 bits (107), Expect = 7e-05
Identities = 22/93 (23%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
P EG + AP A A P AP P P P + + P
Sbjct: 317 PDTEGREGDDLAPTAVC----TDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDV 372
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
A + A PA P A A A
Sbjct: 373 RTGTAPTSLANVSHADPAVAQPTQAATLAGAAP 405
Score = 43.7 bits (103), Expect = 2e-04
Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 7/96 (7%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
P EG + AP P P P A A P + +
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPV-------VPVAAATPVDASL 369
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
A + A + PA A A A P
Sbjct: 370 PDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAP 405
Score = 42.6 bits (100), Expect = 4e-04
Identities = 24/96 (25%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
P EG + AP A A P AP P A A P + P
Sbjct: 317 PDTEGREGDDLAPTAVC----TDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDV 372
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A P A + PA A+ A GA
Sbjct: 373 RTGTA----PTSLANVSHADPAVAQPTQAATLAGAA 404
Score = 41.0 bits (96), Expect = 0.001
Identities = 20/97 (20%), Positives = 25/97 (25%), Gaps = 6/97 (6%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
E EG + P A A P AP P P A P + + P
Sbjct: 320 EGREGDDLAP--TAVCTDAGLLPDTPLLPDAPEGSSDP----VVPVAAATPVDASLPDVR 373
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
A + A + P A A A
Sbjct: 374 TGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATH 410
Score = 41.0 bits (96), Expect = 0.001
Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P E + AP A A P AP P A A P + + G
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGL-LPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTG 375
Query: 477 -APAPPADAPPAEPAPPAEAPPAESAPA 503
AP A+ A+PA A A A
Sbjct: 376 TAPTSLANVSHADPAVAQPTQAATLAGA 403
Score = 39.5 bits (92), Expect = 0.004
Identities = 19/98 (19%), Positives = 24/98 (24%), Gaps = 3/98 (3%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE-GAPAPPAEGAPRAEGAPPAEGAPA 463
P EG + AP A AP P P A + + P
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLP--DVRT 374
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A + A + PA A A A
Sbjct: 375 GTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATHLM 412
Score = 37.6 bits (87), Expect = 0.015
Identities = 26/100 (26%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P EG D AP A A P AP P P A + +
Sbjct: 317 PDTEGREGDDLAPTAVC----TDAGLLPDTPLLPDAPEGSSDP----VVPVAAATPVDAS 368
Query: 403 PAPPAEGPPPAEGAPPAEAPP-PAEGAPAAEGAPAPAEGA 441
G P A + A P A+ AA A A +GA
Sbjct: 369 LPDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGA 408
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 44.9 bits (106), Expect = 7e-05
Identities = 37/126 (29%), Positives = 41/126 (32%), Gaps = 5/126 (3%)
Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG----APPAEAPPPAEGAPAAEGAPAP 437
EGA A P A AEG A P G A+G A P AP P P
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRP 210
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A P + P P+ AP A P P P EAPP
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPG-GGEAPP 269
Query: 498 AESAPA 503
A + PA
Sbjct: 270 ANATPA 275
Score = 42.2 bits (99), Expect = 4e-04
Identities = 43/134 (32%), Positives = 50/134 (37%), Gaps = 8/134 (5%)
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP--PPAEGAPPAEA 421
EGA A P A PAEG A P EG+ PA P P PA+ PA
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAA--PPLGEGSADGSCDPALPLSAPRLGPADVFVPATP 208
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P + E P P+ P + + P AEG PAPP G
Sbjct: 209 RPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGG---- 264
Query: 482 ADAPPAEPAPPAEA 495
+APPA P EA
Sbjct: 265 GEAPPANATPAPEA 278
Score = 39.9 bits (93), Expect = 0.003
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 3/113 (2%)
Query: 356 PAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
PAEG A P G A+G+ A PA+ PA P A P P P+
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPR-TTASPETTPTPS 225
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
P PA A A PA P APPA PAP A
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEA 278
Score = 39.2 bits (91), Expect = 0.004
Identities = 47/133 (35%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 358 EGAPPAEGAPPAEGAPPAEG--APPAEGAPPAEGA-PPAEGAPAAEGAPA----PPAEGP 410
EGA A P A PAEG A P G A+G+ PA A PA P P
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRP 210
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA- 469
P A P P P+ A P G P AEG PAPP G
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGT-----TPEAEGTPAPPTPGGG 265
Query: 470 PAPPAEGAPAPPA 482
APPA PAP A
Sbjct: 266 EAPPANATPAPEA 278
Score = 36.1 bits (83), Expect = 0.043
Identities = 26/104 (25%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
P G A+G+ A PA+ PA P E P +PP+
Sbjct: 175 PPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTT 234
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG-APAPPAEGAPRA 452
P A A P P G AP A AP A
Sbjct: 235 IPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEA 278
Score = 30.3 bits (68), Expect = 2.3
Identities = 27/85 (31%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 349 APADGAPPAEGAPPAEG-APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
PAD PA P A P P+ P PA A AP A P
Sbjct: 198 GPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIA--APQAGTTPEAEG 255
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAE 432
PP G A PPA PA E
Sbjct: 256 TPAPPTPGGGEA---PPANATPAPE 277
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 44.4 bits (106), Expect = 8e-05
Identities = 25/102 (24%), Positives = 28/102 (27%), Gaps = 12/102 (11%)
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA----------PA 443
EGA A A A A A A A + A +PA + A
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL--SPAARKLAAENGLDASAVKG 135
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
G E A A A A APAP P
Sbjct: 136 TGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARP 177
Score = 39.0 bits (92), Expect = 0.004
Identities = 26/102 (25%), Positives = 29/102 (28%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
EGA A A A A AP A A +PAA A +G
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTG 137
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
+ A A A A AP GA P E
Sbjct: 138 KGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179
Score = 37.9 bits (89), Expect = 0.010
Identities = 25/102 (24%), Positives = 28/102 (27%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
EG A A A A A AP A A +P A G A+
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTG 137
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
+ A A APAA A A P E
Sbjct: 138 KGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179
Score = 37.5 bits (88), Expect = 0.015
Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP- 445
A A A AA A A PA+ A +A PA AAE +
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKG 139
Query: 446 ----------AEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
A A A A PA APA A P E
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179
Score = 35.2 bits (82), Expect = 0.063
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A A A A A A APA A AE + A +P A
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAA 119
Score = 34.4 bits (80), Expect = 0.12
Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 18/92 (19%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP--------- 480
AA GA A A A A A +A+ A AE + + A AE
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKG 139
Query: 481 ---------PADAPPAEPAPPAEAPPAESAPA 503
A A A A +APA
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAPA 171
Score = 33.7 bits (78), Expect = 0.21
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
EGA A A A A A A A A + PA
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPA 118
Score = 31.7 bits (73), Expect = 0.85
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
A A A A A A A PA+ A A+ +P A
Sbjct: 77 DEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAA 119
Score = 31.0 bits (71), Expect = 1.5
Identities = 17/58 (29%), Positives = 17/58 (29%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A EG EGA A A A A A A A A A PA
Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPA 118
Score = 29.4 bits (67), Expect = 4.2
Identities = 21/94 (22%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
A+ A A A AE + A +P A G + +G
Sbjct: 84 AAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL-SPAARKLAAENGLDASAVKGTGKGGRV 142
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
+ A A A A P A A AP A
Sbjct: 143 TKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGAR 176
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 44.2 bits (104), Expect = 1e-04
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 5/149 (3%)
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP----PAEGAPP 392
+ P E A G P + + +P + PP+ + P P +P
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPN 160
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
+ + + + E P P P ++P P + +P P P +P
Sbjct: 161 QQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQS-ETPTSSPPPQSPPDEPGEPQSPTP 219
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
+ AP A E P P P P
Sbjct: 220 QQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 44.2 bits (104), Expect = 1e-04
Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 3/189 (1%)
Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAP 373
T P +++V + R+ S ET E E G P G+ P+
Sbjct: 51 PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGS 110
Query: 374 P---AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
A G P + + +P + P + + P E PP P P + P+
Sbjct: 111 AEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPS 170
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
E +P E + P +P + +P P + + A +P + A
Sbjct: 171 HEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQA 230
Query: 491 PPAEAPPAE 499
E P E
Sbjct: 231 VEHEDEPTE 239
Score = 33.0 bits (75), Expect = 0.33
Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 4/164 (2%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA- 402
KP AP P AE + E +G P G+ +
Sbjct: 45 KPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPT 104
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
P+P A G P + +PA+ P P P P + P +
Sbjct: 105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPS 164
Query: 463 A---PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P E +P P P D+P + + P +P
Sbjct: 165 SFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPP 208
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 43.7 bits (104), Expect = 2e-04
Identities = 24/75 (32%), Positives = 27/75 (36%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
A AA APA A A + PA A A AE APA A A A A + P
Sbjct: 63 AAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP 122
Query: 487 AEPAPPAEAPPAESA 501
E+A
Sbjct: 123 EAAQARERRERGEAA 137
Score = 28.7 bits (65), Expect = 7.8
Identities = 13/44 (29%), Positives = 13/44 (29%)
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A APA A A A A AE A A
Sbjct: 63 AAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAP 106
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 42.6 bits (100), Expect = 4e-04
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+G PA PP AP P APA A P + PR E
Sbjct: 10 GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRE--RKP 67
Query: 459 EGAPAPPAEGAPAPPAEGA 477
+ A E P EG
Sbjct: 68 KPASLWKLEDFVVEPQEGK 86
Score = 41.1 bits (96), Expect = 0.001
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
E A P APAPP A PA A AP A AP AE P + P E P
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEK-PKKDKPRRERKP 67
Score = 41.1 bits (96), Expect = 0.001
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
+ E PA P+P A AP PPA+ A A PA AP AE P +
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKD 59
Score = 38.7 bits (90), Expect = 0.005
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA-PPADAPPAEPAPPAEAP 496
E PA +P A APP A PA A AP A A P P P A
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71
Query: 497 P 497
Sbjct: 72 L 72
Score = 37.6 bits (87), Expect = 0.014
Identities = 23/77 (29%), Positives = 26/77 (33%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
G AE PA +P A APP A AA A A P P + P P
Sbjct: 10 GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69
Query: 425 AEGAPAAEGAPAPAEGA 441
A + P EG
Sbjct: 70 ASLWKLEDFVVEPQEGK 86
Score = 36.0 bits (83), Expect = 0.048
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
APP+ A PA P AP + A PA AP AE P + P E P P +
Sbjct: 15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAE--KPKKDKPRRERKPKPASL 72
Query: 409 GPPPAEGAPPAE 420
P E
Sbjct: 73 WKLEDFVVEPQE 84
Score = 35.7 bits (82), Expect = 0.061
Identities = 17/65 (26%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
E A AP APAPP A A A A P P P A
Sbjct: 12 GEAEQPAP-APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 485 PPAEP 489
+
Sbjct: 71 SLWKL 75
Score = 35.3 bits (81), Expect = 0.072
Identities = 15/60 (25%), Positives = 20/60 (33%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
+P P P S A +T P P P +P+ + P E P P S
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKL 75
Score = 34.9 bits (80), Expect = 0.086
Identities = 26/82 (31%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
E PA PA +P A AP A PA A P A P + P E
Sbjct: 12 GEAEQPA----PAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPR-AEKPKKDKPRRERK 66
Query: 435 PAPA-----EGAPAPPAEGAPR 451
P PA E P EG R
Sbjct: 67 PKPASLWKLEDFVVEPQEGKTR 88
Score = 34.5 bits (79), Expect = 0.15
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+G PA P+P A APAPP A A PA A AP A + A
Sbjct: 10 GKGEAEQPAPAPPSPAA--APAPPPPAKTAAPATKAAAPAAAAPRA 53
Score = 34.1 bits (78), Expect = 0.19
Identities = 20/63 (31%), Positives = 22/63 (34%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
G AE PA +P A APP A A A AA A P + P P
Sbjct: 10 GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69
Query: 419 AEA 421
A
Sbjct: 70 ASL 72
Score = 33.7 bits (77), Expect = 0.21
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
E PA APP AP P A PA A A P P
Sbjct: 12 GEAEQPAPAPPSPAAAP-----APPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERK 66
Query: 473 PAEGAPAPPAD 483
P + D
Sbjct: 67 PKPASLWKLED 77
Score = 32.2 bits (73), Expect = 0.72
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
G AE P A AP PA A AP A AP AE
Sbjct: 10 GKGEAEQPAPAPPSPAAAPA-PPPPAKTAAPATKAAAPAAAAPRAE 54
Score = 30.3 bits (68), Expect = 2.4
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 224 EPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
E E + S P P P E P ++ P P P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER---KPKP 69
Query: 284 EELW 287
LW
Sbjct: 70 ASLW 73
Score = 29.5 bits (66), Expect = 4.1
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
P APA P AP + A PA AP AE P + P E P E
Sbjct: 20 APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAE--KPKKDKPRRERKPKPASLWKLED 77
Query: 402 APAPPAEG 409
P EG
Sbjct: 78 FVVEPQEG 85
Score = 28.7 bits (64), Expect = 7.5
Identities = 11/45 (24%), Positives = 14/45 (31%)
Query: 239 GKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
G+ P P PPPP P + P +P P
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKP 56
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 42.0 bits (99), Expect = 5e-04
Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
A APPA++ E PAA A AP A P A R A
Sbjct: 80 ATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHG------IDLSAVPG 133
Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
D AP + PA +A A
Sbjct: 134 TGVTGRVTKEDIIKKTEAPASAQQPAPAAAA 164
Score = 42.0 bits (99), Expect = 6e-04
Identities = 24/99 (24%), Positives = 26/99 (26%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
EG A PA E A A AP A P+ A P
Sbjct: 75 EEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGT 134
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
APA + APA A AP P
Sbjct: 135 GVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRP 173
Score = 41.6 bits (98), Expect = 6e-04
Identities = 24/90 (26%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE--GA 428
A P + + PA A A A A PA E A P G
Sbjct: 81 TAAPPAKSGEEKEETPAASAAAAPTAAANR-PSLSPAARRLAKEHGIDLSAVPGTGVTGR 139
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
E E APA + AP A PA
Sbjct: 140 VTKEDIIKKTE-APASAQQPAPAAAAKAPA 168
Score = 40.5 bits (95), Expect = 0.001
Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPAAEGAPAPPAEGPPPAEGAP 417
A P + + PA A A A PA A E A G
Sbjct: 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRV 140
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
E APA+ PAPA A AP P
Sbjct: 141 TKEDIIKKTEAPASAQQPAPAAAAKAPANFTRP 173
Score = 38.6 bits (90), Expect = 0.006
Identities = 20/103 (19%), Positives = 22/103 (21%), Gaps = 4/103 (3%)
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA-EGAPRAEGAPPAE 459
A A P + PA + A P A A A E P
Sbjct: 79 DATAAPPAKSGEEKEETPAASAAAA---PTAAANRPSLSPAARRLAKEHGIDLSAVPGTG 135
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
E A A A AP P E
Sbjct: 136 VTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPEERVK 178
Score = 33.9 bits (78), Expect = 0.18
Identities = 21/95 (22%), Positives = 24/95 (25%), Gaps = 2/95 (2%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPPAEGAPPAEGAPAAEGAPAP 405
AP + + PA A A A PA E P
Sbjct: 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRV 140
Query: 406 PAEGPPPAEGAPPAEA-PPPAEGAPAAEGAPAPAE 439
E AP + P PA A A P E
Sbjct: 141 TKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPEE 175
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 42.3 bits (99), Expect = 6e-04
Identities = 32/129 (24%), Positives = 39/129 (30%), Gaps = 15/129 (11%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA------------PPPAEGAPAAEGA 434
+ PP AP + P PP P G+ PA A P + A
Sbjct: 426 SSRQPPGAPAPRRDNDPPPP---PRARPGSTPACARRARAQRARDAGPEYVDPLGALRRL 482
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
PA A P P A +P G P P PPA APP + P
Sbjct: 483 PAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYL 542
Query: 495 APPAESAPA 503
P +
Sbjct: 543 EPDDDRFDR 551
Score = 38.4 bits (89), Expect = 0.009
Identities = 34/157 (21%), Positives = 41/157 (26%), Gaps = 13/157 (8%)
Query: 351 ADGAPPAEGAPPAEGAPPA-----EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
+ PP AP + PP G+ PA A A A P P P
Sbjct: 426 SSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRAR--AQRARDAGPEYVDPLGALRRLP 483
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
PPP A P P G P A R + PPA P
Sbjct: 484 AGAAPPPEPAAAP---SPATYYTRMGGGPPRLPPRNRATETL---RPDWGPPAAAPPEQM 537
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+ P + A A P P +
Sbjct: 538 EDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPI 574
Score = 37.2 bits (86), Expect = 0.023
Identities = 62/266 (23%), Positives = 76/266 (28%), Gaps = 31/266 (11%)
Query: 245 PPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDD 304
P G P + PPP P P TP + + P +D
Sbjct: 429 QPPGAPAPRRDNDPPPPPRARP-----GSTPACARRARAQR--------ARDAGPEYVDP 475
Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
L A P P + + GG P+ A + PPA
Sbjct: 476 LGALRRLPAGAAPPPEPAAAPSPA----TYYTRMGGGPPRLPPRNRATETLRPDWGPPAA 531
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPAAEGAPA--PPAEGPPPAEGAPPAEA 421
P P P + +GA A P AP P EG +E E
Sbjct: 532 APPEQMEDP--YLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEI 589
Query: 422 PPP-----AEGAPAAEGAPAPAEGAPAPP--AEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
P P P P AP P E P +P PPA P P
Sbjct: 590 PTPRVYQNPLPRPMEGAGEPPDLDAPTSPWVEEENPIYGWGDSPLFSP-PPAARFPPPDP 648
Query: 475 EGAPAPPADAPPAEPAPPAEAPPAES 500
+P PPA P P P A AP +
Sbjct: 649 ALSPEPPA-LPAHRPRPGALAPDGPA 673
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 42.1 bits (99), Expect = 6e-04
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 12/147 (8%)
Query: 99 KDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRP 158
+ E L Q + + + E ++ LKD +I F+
Sbjct: 577 IKFHSQNQVEYKKLVQNWNKNLPLFEYDVEFMEIAHFLKDLKILASSD-------NFIL- 628
Query: 159 ILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKRE----FSMEDAEKEKKPEWVKEPESK 214
K + + KL K + NF++ L+ + + E K W +K
Sbjct: 629 FSSKRDEIDELIIKLNKNNYKVNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTK 688
Query: 215 KKRIPIPEPEPEPESATDASDVEDGKE 241
K + P +P+ T S KE
Sbjct: 689 KSVVIKPLEKPKKYEKTSVSKENLEKE 715
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 42.4 bits (99), Expect = 6e-04
Identities = 34/151 (22%), Positives = 42/151 (27%), Gaps = 2/151 (1%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
P PP P P P AP EG P P +
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398
Query: 409 GP-PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
P P + A PA+ A PA+ PA P A A AE + A
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
+ + P A P + P E P
Sbjct: 459 QSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
Score = 40.5 bits (94), Expect = 0.003
Identities = 59/291 (20%), Positives = 85/291 (29%), Gaps = 26/291 (8%)
Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLP-----PEGEQPPVEEVPPPPE 261
W E + P+ + P T A G +T P PEG P + P
Sbjct: 333 WAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEG-YPQQSQYAQPAV 391
Query: 262 PEPEPPVEEIPPTPP--SPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQP 319
EP + + P P +P P + Y + E+ ++ + +
Sbjct: 392 QYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE 451
Query: 320 LLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP 379
+Q++ + + + PA P + P E P E P E
Sbjct: 452 -----------QQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETK 500
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
PA PP E A E P P P + A P A
Sbjct: 501 PAR--PPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPA-----EGAPAPPAEGAPAPPADAP 485
A +P A G +A A A A P G P P + P P
Sbjct: 559 AAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRP 609
Score = 40.1 bits (93), Expect = 0.003
Identities = 42/167 (25%), Positives = 50/167 (29%), Gaps = 9/167 (5%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+P+ APA P + PA+ A AP A A A + A +
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP-APEQPVAGNAWQAEEQQSTFAPQS 460
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA--------EGAPRAE 453
PA P + P P E P E P E PA P E R
Sbjct: 461 TYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARER 520
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A P P P P AP A P A A +P A
Sbjct: 521 EQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASG 567
Score = 39.7 bits (92), Expect = 0.004
Identities = 43/207 (20%), Positives = 58/207 (28%), Gaps = 7/207 (3%)
Query: 303 DDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPP-----A 357
D+ + V+A P +L S + T ++ G P E A A A A
Sbjct: 275 DEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA 334
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
P PP P P P APA EG P P +
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P + P + A A PA+ PA P + A +
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454
Query: 477 APAPPADAPPAEPAP-PAEAPPAESAP 502
AP + + PA P P
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQP 481
Score = 38.9 bits (90), Expect = 0.008
Identities = 64/289 (22%), Positives = 88/289 (30%), Gaps = 14/289 (4%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
PI EP +AT A+ P+ V+ P P +P P T
Sbjct: 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPG--PQTGEPV 372
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
+ P PE Y + + A V ++ +++ + P + + A +
Sbjct: 373 IAPAPEG---YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ P E P G + AP + PA P + P E P
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA--EGAPAPPAEGAPRAEGAP 456
E P P E PA PP E A E A + P P E P
Sbjct: 490 VE--PEPVVEETKPAR--PPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLK 545
Query: 457 PAEGAPAPPAEGAP--APPAEGAP-APPADAPPAEPAPPAEAPPAESAP 502
A PP E A +P A G A A A A P + P
Sbjct: 546 APSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGP 594
Score = 36.2 bits (83), Expect = 0.043
Identities = 27/125 (21%), Positives = 29/125 (23%), Gaps = 1/125 (0%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE-APPPAEGAPAAEGAPAPA 438
P A A A + AP PP P P P APAP
Sbjct: 319 PVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPE 378
Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P + APA A AP P AP
Sbjct: 379 GYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAP 438
Query: 499 ESAPA 503
E A
Sbjct: 439 EQPVA 443
Score = 35.1 bits (80), Expect = 0.12
Identities = 30/128 (23%), Positives = 33/128 (25%), Gaps = 3/128 (2%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
E P GAP E A A A + A P E P PP + P P
Sbjct: 306 EYDPLLNGAPITEPVAVAAAATTATQSWAAPVE---PVTQTPPVASVDVPPAQPTVAWQP 362
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P P AP PA P + A A P A
Sbjct: 363 VPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYA 422
Query: 496 PPAESAPA 503
P E
Sbjct: 423 PAPEQPAQ 430
Score = 30.4 bits (68), Expect = 3.1
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 194 FSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDAS-DVEDGKETPLPPEGEQPP 252
++ + ++P + PE E + A ++ E + P E
Sbjct: 421 YAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQ 480
Query: 253 VEEVPPPPEPEPEPPVEEIPPTPP 276
+ V P EPEP VEE P P
Sbjct: 481 PQPVEQQPVVEPEPVVEETKPARP 504
Score = 29.7 bits (66), Expect = 5.4
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 194 FSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGE-QPP 252
FS++D E + + + PI EP +P+ + P+ P+ + Q P
Sbjct: 722 FSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP 781
Query: 253 VEEVPPPPE-PEPEPPVEEIPPT--PPSPVTPNPE 284
+ V P P+ +P+ PV P P PV P P+
Sbjct: 782 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ 816
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 40.6 bits (95), Expect = 7e-04
Identities = 31/102 (30%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
PA E PA P P P APA A A A+ A AP A PRA+
Sbjct: 104 EPATENKPAEVTTPVEP--MGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
PA A P E A A+ A P P +
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTK 203
Score = 37.9 bits (88), Expect = 0.006
Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 384 APPAEGAPPAEGAPA-AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
P E P P G P P P PA A A A AP A P +P
Sbjct: 104 EPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKA--PAKPRAKSP 161
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
P A+ AP+ A+ A A P PA
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPA 198
Score = 35.2 bits (81), Expect = 0.052
Identities = 25/93 (26%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
A P PA PAP A A A A APA P +P
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PA A P + A+ A A P +A
Sbjct: 162 R-PAAKAAPKPTETITAKKAKKTAAAPKPTADK 193
Score = 34.0 bits (78), Expect = 0.099
Identities = 20/108 (18%), Positives = 25/108 (23%), Gaps = 2/108 (1%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P E P P P APAP A P P +P
Sbjct: 104 EPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRP 163
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
A A + A+ + A P A + A
Sbjct: 164 -AAKAAPKPTETITAK-KAKKTAAAPKPTADKTATPAKKTTKKKKTKA 209
Score = 33.6 bits (77), Expect = 0.15
Identities = 19/109 (17%), Positives = 25/109 (22%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
+ P P PA A A A AP PA+ +
Sbjct: 101 SMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKS 160
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
AP P E A + A P P + +
Sbjct: 161 PRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTKA 209
Score = 31.7 bits (72), Expect = 0.70
Identities = 24/105 (22%), Positives = 28/105 (26%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
Q + +E E P P PA A A A AP A P
Sbjct: 97 QKATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKP 156
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
A+ A A P E + A AP P A
Sbjct: 157 RAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKT 201
Score = 30.6 bits (69), Expect = 1.5
Identities = 20/99 (20%), Positives = 24/99 (24%), Gaps = 3/99 (3%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
E A P P AP A A P A +P
Sbjct: 103 SEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPR 162
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
P A+ P A+ + AA A PA
Sbjct: 163 PAAKAAPKPTETITAKKA---KKTAAAPKPTADKTATPA 198
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 41.3 bits (97), Expect = 8e-04
Identities = 22/93 (23%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 392 PAEGAPAAEGAPAPPAEGPP-PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
AA P+ A AE + P A A A A+ A
Sbjct: 232 APWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA 291
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
E A A A P E P P P D
Sbjct: 292 PKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324
Score = 40.2 bits (94), Expect = 0.002
Identities = 28/128 (21%), Positives = 33/128 (25%), Gaps = 6/128 (4%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP-AEGAPPAEAPPPAEGAPAAEGA 434
E A A + +G P A PP+EA P A
Sbjct: 200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAA 259
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
AP A+ A E P + A A PAP A A P E P
Sbjct: 260 LKTPATAPKAAAKNAKAPEAQPVSGTAAA-----EPAPKEAAKAAAAAAKPALEDKPRPL 314
Query: 495 APPAESAP 502
Sbjct: 315 GIARPGGA 322
Score = 39.4 bits (92), Expect = 0.003
Identities = 29/107 (27%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAP---PAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
E A A PP+E A P A P AA+ A AP A+
Sbjct: 227 EVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTA 286
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
A PA A AA P E PR G GA
Sbjct: 287 AAEPAPKEAAKAAAAAA-----------KPALEDKPRPLGIARPGGA 322
Score = 38.2 bits (89), Expect = 0.008
Identities = 26/115 (22%), Positives = 31/115 (26%), Gaps = 2/115 (1%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
+ +G AP A P + A A P A+ A A E P
Sbjct: 222 RIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQP 281
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
PA A A PA E P P A A+ G P
Sbjct: 282 VSGTAAAEPAPKEAAKAAAAAA--KPALEDKPRPLGIARPGGADDLKLISGVGPK 334
Score = 36.7 bits (85), Expect = 0.026
Identities = 27/120 (22%), Positives = 32/120 (26%), Gaps = 4/120 (3%)
Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
+ A A + +G AP A P + AA A
Sbjct: 200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAE--TN 257
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGA--PAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
A P A+ A A E P A PAP A A PA P A
Sbjct: 258 AALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
Score = 35.9 bits (83), Expect = 0.040
Identities = 27/105 (25%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA- 466
E A A A + +G P A P +E A P A
Sbjct: 200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAA 259
Query: 467 ----EGAPAPPAEGAPAPPADAPP----AEPAPPAEAPPAESAPA 503
AP A+ A AP A AEPAP A A +A
Sbjct: 260 LKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAK 304
Score = 35.9 bits (83), Expect = 0.043
Identities = 31/121 (25%), Positives = 35/121 (28%), Gaps = 8/121 (6%)
Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
E A A A G +G AP P + AA A AE
Sbjct: 199 EEAGKARYNASKALAEDI-GDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETN 257
Query: 442 PAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A AP A A E P + A A PA A+ A A P E
Sbjct: 258 AALKT-----PATAPKAAAKNAKAPE--AQPVSGTAAAEPAPKEAAKAAAAAAKPALEDK 310
Query: 502 P 502
P
Sbjct: 311 P 311
Score = 34.8 bits (80), Expect = 0.10
Identities = 26/117 (22%), Positives = 34/117 (29%), Gaps = 9/117 (7%)
Query: 321 LKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP---PAEGAPPAEG 377
L + DT++R E + + A PP+E A P A P
Sbjct: 212 LAEDIGDTVKRIDGTEVPLLAPWQGD----AAPVPPSEAARPKSADAETNAALKTPATAP 267
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
A+ A E P + A A A P E P G GA
Sbjct: 268 KAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAA--KPALEDKPRPLGIARPGGA 322
>gnl|CDD|204055 pfam08764, Coagulase, Staphylococcus aureus coagulase.
Staphylococcus aureus secretes a cofactor called
coagulase. Coagulase is an extracellular protein that
forms a complex with human prothrombin, and activates it
without the usual proteolytic cleavages. The resulting
complex directly initiates blood clotting.
Length = 282
Score = 40.9 bits (96), Expect = 8e-04
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 32/141 (22%)
Query: 116 YWQRIYNLEA-IKYELDREIMLKDFEITELGKQVNDLRGKFVRPIL--------KKVSKY 166
YW +I +LE+ LD +L+D++ E K+ D + K + IL KK ++Y
Sbjct: 25 YWGKIKSLESQFSNALD---LLEDYQYGE--KEYKDAKDKLMTRILGEDQYLLEKKKAEY 79
Query: 167 ENKFAKLQKKAAEFNFRSQLKAVKKREF---------------SMEDAEKEKKPEWVKEP 211
E K+ K KK E N S+LK ++ S++DA ++ K E VK+
Sbjct: 80 E-KYKKWYKKYKEENPNSKLKMKTFHKYNLYDLTMKEYNEISKSLKDAVEDFKKE-VKKI 137
Query: 212 ESKKKRIPIPEPEPEPESATD 232
+SK + P E E E ATD
Sbjct: 138 QSKNSDLK-PYSEEEEEKATD 157
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 41.8 bits (98), Expect = 8e-04
Identities = 35/135 (25%), Positives = 42/135 (31%), Gaps = 9/135 (6%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
P G A + A P +G+P AP G E A GAP
Sbjct: 600 PYGLADVELDEEDTEDDDAVELPSTPSMGTQDGSPAPSAAP--AGYDIFEFAGDGTGAPH 657
Query: 405 PPAEGPPPAEGAPPAE----APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE---GAPP 457
P A G A+ A P P GA + A APA P A E
Sbjct: 658 PVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPASPPTAASAIEDLFANGM 717
Query: 458 AEGAPAPPAEGAPAP 472
G+ P + AP
Sbjct: 718 GSGSQTVPLPISAAP 732
Score = 36.8 bits (85), Expect = 0.031
Identities = 28/142 (19%), Positives = 39/142 (27%), Gaps = 13/142 (9%)
Query: 332 QASHEETEGGEPKPEGEAPA----DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
+ E+TE + P+ DG+P AP G P A G+ A
Sbjct: 607 ELDEEDTEDDDAVELPSTPSMGTQDGSPAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGA 666
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
+ A P + P + PA APA+ A A
Sbjct: 667 QHADPLGDLFSGL---------PSTVGASSPAFQAASGSQAPASPPTAASAIEDLFANGM 717
Query: 448 GAPRAEGAPPAEGAPAPPAEGA 469
G+ P AP
Sbjct: 718 GSGSQTVPLPISAAPQSADRDT 739
Score = 36.4 bits (84), Expect = 0.032
Identities = 34/136 (25%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A P + P G E A P+ P+ G + PA P A
Sbjct: 591 ARPYQSFLPPYGLADVELDEEDTEDDDAVELPSTPSMG---TQDGSPA--PSAAPAGYDI 645
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAE----GAPAPPAEGAPA---PPAEGAPAPPADA 484
GAP P A G+ A+ A P G P+ +PA APA P A
Sbjct: 646 FEFAGDGTGAPHPVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPASPPTA 705
Query: 485 PPAEPAPPAEAPPAES 500
A A + S
Sbjct: 706 ASAIEDLFANGMGSGS 721
Score = 34.1 bits (78), Expect = 0.18
Identities = 34/147 (23%), Positives = 43/147 (29%), Gaps = 9/147 (6%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA--PPAEGPP 411
A P + P G E A P +G+PA APA E
Sbjct: 591 ARPYQSFLPPYGLADVELDEEDTEDDDAVELPSTPSMGTQDGSPAPSAAPAGYDIFEFAG 650
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAE--GAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
GAP P A G+ A+ A + + A A APA P A
Sbjct: 651 DGTGAP----HPVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPASPPTAA 706
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAP 496
A + P P + AP
Sbjct: 707 SA-IEDLFANGMGSGSQTVPLPISAAP 732
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 41.4 bits (97), Expect = 0.001
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A GAP+ P AP E + A A GAP + P
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEK--EVRSLRSAPTAAATAAGAPLPDFDPR 398
Query: 458 AEGAPAP-PAEGAPAPPAEGAPAPPADAPPA 487
G PAP PA A APP A PA
Sbjct: 399 PRGPPAPEPARSAEAPPLVAPAAAPAGLALR 429
Score = 40.2 bits (94), Expect = 0.002
Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
A G P+EG P PA E A A A AP
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSA-------PTAAATAAGAPLP 393
Query: 467 EGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
+ P P AP P A PA AP
Sbjct: 394 DFDPRPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 39.4 bits (92), Expect = 0.004
Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 2/85 (2%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
A + P AP +A A A A P P P
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFD--PR 398
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAP 444
PPA + AP A AP
Sbjct: 399 PRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 37.5 bits (87), Expect = 0.016
Identities = 24/86 (27%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
E A APPA A A GAP + P G PAP
Sbjct: 347 SEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPE 406
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAE 432
P + APP AP A A
Sbjct: 407 ---PARSAEAPPLVAPAAAPAGLALR 429
Score = 36.0 bits (83), Expect = 0.044
Identities = 20/102 (19%), Positives = 22/102 (21%), Gaps = 15/102 (14%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP--AEGPPPAEGAPPAEAPPPAEGAPAAE 432
A G P+EG PA A A P + P
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPR 400
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
G PAP A AP A A
Sbjct: 401 GPPAPEPARSAEAPP-------------LVAPAAAPAGLALR 429
Score = 35.2 bits (81), Expect = 0.084
Identities = 19/99 (19%), Positives = 23/99 (23%), Gaps = 10/99 (10%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
A G P+EG PA + + AP A A
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAA----------TAAGA 390
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P + P G PAP A A
Sbjct: 391 PLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALR 429
Score = 34.8 bits (80), Expect = 0.11
Identities = 22/82 (26%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP---AEGAPAPPAEGAPAPPAEGAPAPP 481
A G +EG A A APAP AP A A AP + P P
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRP- 399
Query: 482 ADAPPAEPAPPAEAPPAESAPA 503
P P P A
Sbjct: 400 --RGPPAPEPARSAEAPPLVAP 419
Score = 34.0 bits (78), Expect = 0.17
Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPA-EGAPPAEGAPPAEGAPPAEGAPA 398
AP AP A A A GAP + P G P
Sbjct: 345 APSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP- 403
Query: 399 AEGAPAPPAEGPPPAEGAPPA 419
AP P P AP A
Sbjct: 404 ---APEPARSAEAPPLVAPAA 421
Score = 29.8 bits (67), Expect = 3.5
Identities = 17/72 (23%), Positives = 19/72 (26%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
A + A A GAP + P G P E A AE P
Sbjct: 356 PAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPP 415
Query: 392 PAEGAPAAEGAP 403
A A G
Sbjct: 416 LVAPAAAPAGLA 427
Score = 29.8 bits (67), Expect = 3.6
Identities = 13/70 (18%), Positives = 15/70 (21%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
P + A A P P PPA + AP
Sbjct: 358 PAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLV 417
Query: 401 GAPAPPAEGP 410
A PA
Sbjct: 418 APAAAPAGLA 427
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 41.2 bits (97), Expect = 0.001
Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 31/178 (17%)
Query: 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED--EIGD 111
++ K+L L KK +ELK+ E + +++ + ++ + AE+ + G+
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKK-LENKLEKQEDEL-------EELEKAAEELRQKGE 324
Query: 112 LCQEYWQRI------------YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPI 159
L Q I Y E IK ELD + K+ L+G V +
Sbjct: 325 LLYANLQLIEEGLKSVRLADFYGNEEIKIELD-KSKTPSENAQRYFKKYKKLKGAKV-NL 382
Query: 160 LKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKR 217
+++S+ + A + + + ++E+ +E E + + + KK++
Sbjct: 383 DRQLSELKEAIAYYESAK-------TALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 41.1 bits (96), Expect = 0.001
Identities = 37/146 (25%), Positives = 45/146 (30%), Gaps = 8/146 (5%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
+ A PA AP AP + A ++ A A A +
Sbjct: 61 DTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSV 120
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG--------APAPPAEGA 469
P +AP A A+ +PA A A APR E A A AP
Sbjct: 121 PRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAP 180
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEA 495
P APAP A A A A
Sbjct: 181 VQAPVVAAPAPVPAIAAALAAHAAYA 206
Score = 35.7 bits (82), Expect = 0.062
Identities = 36/142 (25%), Positives = 41/142 (28%), Gaps = 8/142 (5%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG-----APPAEA 421
P + AP + P+ A A AA AP E A A
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAA--QALAHAAAVRTAPRQEHALSAVPEQLFADFLTTA 174
Query: 422 PPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
P P A APAP A A A A+ + A A P
Sbjct: 175 PVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALP 234
Query: 481 PADAPPAEPAPPAEAPPAESAP 502
P PA PA A A AP
Sbjct: 235 PIVVAPAAPAALAAVAAAAPAP 256
Score = 32.3 bits (73), Expect = 0.77
Identities = 37/140 (26%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
+APA AP + P+ A A AP E A A P P
Sbjct: 123 QAPA-AAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPV 181
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP---AP 464
+ P P A A A AA + + PPA P AP
Sbjct: 182 Q-APVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAP 240
Query: 465 PAEGAPAPPAEGAPAPPADA 484
A A A A APAP D
Sbjct: 241 AAPAALAAVAAAAPAPQNDE 260
Score = 30.3 bits (68), Expect = 2.4
Identities = 35/199 (17%), Positives = 48/199 (24%), Gaps = 11/199 (5%)
Query: 254 EEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAV 313
+ P P P P P + + V AS + +
Sbjct: 61 DTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRV-ASAAEDMIAAMALRQPVS 119
Query: 314 SATPQPLLKSVVKDTL----RRQASHEETEGGEPKPEGEAPADG----APPAEGAPPAEG 365
P V ++ + +H P+ E A A AP
Sbjct: 120 VPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRA 179
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
A P A A A + + + P PPA PP
Sbjct: 180 PVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQI--LPPAALPPIV 237
Query: 426 EGAPAAEGAPAPAEGAPAP 444
A A A APAP
Sbjct: 238 VAPAAPAALAAVAAAAPAP 256
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 41.1 bits (96), Expect = 0.001
Identities = 51/233 (21%), Positives = 75/233 (32%), Gaps = 16/233 (6%)
Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEI-------P 272
IP P+ + A + P+ PE PP+EE PP P+ P+ P
Sbjct: 323 IPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKP 382
Query: 273 PTPPSPVTPNPEELWLYLKDTVSA---SNPVSIDDL-----VEKLMSAVSATPQPLLKSV 324
PT P P P+ D V+ + V + + +PL
Sbjct: 383 PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYA 442
Query: 325 VKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 384
+ L+ S T P + + P PA A A PPA P + A
Sbjct: 443 RYEDLKPPTSPSPTAPTGVSPSVSSTS-SVPAVPDTAPATAATDAAAPPPANMRPLSPYA 501
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+ PP +PAA P+ + A A+ A+ P P
Sbjct: 502 VYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRP 554
Score = 38.4 bits (89), Expect = 0.009
Identities = 47/214 (21%), Positives = 67/214 (31%), Gaps = 4/214 (1%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
PP E + + +P P +P P+P + P+S E L S
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPI 387
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
P P S + P P + PA+ + P + A +
Sbjct: 388 PTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQ-VEAKKTRPLSPYARYED 446
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
PP P+ AP + + P PA A A APPPA P + A
Sbjct: 447 LKPPTS---PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P P+ AP + AP + AP
Sbjct: 504 DDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAP 537
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 41.1 bits (96), Expect = 0.001
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 23/207 (11%)
Query: 27 LKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQE---RR 83
L +ELE KRA++ + ++ A E + L L +R KA EEL+++ E
Sbjct: 77 LMQKELEHKRAQIELERKASTLAEN----YERELDRNLELEVRLKALEELEKKAENEAAE 132
Query: 84 ALERKRVIDERCGEPKDTDDMAE----DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDF 139
A E +++ KD D +E D +E + I ++ E+ D
Sbjct: 133 AEEEAKLL-------KDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADT 185
Query: 140 EITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDA 199
E+ L ++ +LR + K++++ E K L + A S +K E ++
Sbjct: 186 ELKLLESELEELREQL-EECQKELAEAEKKLQSLTSEQASSADNSVK--IKHLEEELKRY 242
Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPE 226
E++ E VK + + +IP E E
Sbjct: 243 EQDA--EVVKSMKEQLLQIPELERELA 267
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 41.0 bits (96), Expect = 0.001
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P EG AP AE G R AP + A APP PPA PP
Sbjct: 873 PRTEGGVRVGYAPTLAEALDQVFGPGTGRVATAPGGDAASAPPPGA--GPPAPPQAVPPP 930
Query: 483 DAPPAEPAPPA--EAPPAESA 501
APP + PPA A
Sbjct: 931 RTTQPPAAPPRGPDVPPAAVA 951
Score = 35.2 bits (81), Expect = 0.10
Identities = 20/53 (37%), Positives = 21/53 (39%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P A G A P G PAPP PPP PPA P + PAA
Sbjct: 897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAA 949
Score = 34.5 bits (79), Expect = 0.14
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 239 GKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEEL 286
G PP G PP PP +PP PP P EL
Sbjct: 908 GDAASAPPPGAGPPAPPQAVPPPRTTQPPAA--PPRGPDVPPAAVAEL 953
Score = 34.5 bits (79), Expect = 0.16
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
G AP + A APP PP APP PPP P A AP G PPA
Sbjct: 898 GTGRVATAPGGDAASAPPPGAGPP---APPQAVPPPRTTQPPA----APPRGPDVPPAAV 950
Query: 449 A 449
A
Sbjct: 951 A 951
Score = 33.3 bits (76), Expect = 0.39
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 14/70 (20%)
Query: 444 PPAEGAPRAEGAP-----------PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P EG R AP P G A G A PPA P + PP
Sbjct: 873 PRTEGGVRVGYAPTLAEALDQVFGPGTGRVATAPGGDAASAPPPGAGPPA---PPQAVPP 929
Query: 493 AEAPPAESAP 502
+AP
Sbjct: 930 PRTTQPPAAP 939
Score = 31.4 bits (71), Expect = 1.5
Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
G AP A PP PPA PP A P PA P PR
Sbjct: 898 GTGRVATAPGGDAASAPPPGAGPPA--PPQA-------VPPPRTTQPPAAP----PRGPD 944
Query: 455 APPAEGA 461
PPA A
Sbjct: 945 VPPAAVA 951
Score = 30.2 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P A G A PP G PA A PP PPA APP
Sbjct: 897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPA--APPR 941
Score = 29.8 bits (67), Expect = 3.8
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGP--PPAEGAPPAEAPPPAEGAPAAEGA 434
G AP + A A PPA PP P APP P A A
Sbjct: 898 GTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVA 951
Score = 29.8 bits (67), Expect = 3.9
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
G AP + A PP PPA PP PP P PA P GP
Sbjct: 898 GTGRVATAPGGDAASA----PPPGAGPPA---PPQAVPPPRTTQP-----PAAPPRGP 943
Score = 29.8 bits (67), Expect = 4.0
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
AP + A PP PP APP PP PPA + PA AE
Sbjct: 905 APGGDAASA----PPPGAGPP---APPQAVPPPRTTQPPAAPPRGPDVPPAAVAE 952
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 40.1 bits (94), Expect = 0.001
Identities = 21/57 (36%), Positives = 23/57 (40%)
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
AP A+A A A A APA A A A A A A PP AP A +
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
Score = 36.2 bits (84), Expect = 0.023
Identities = 19/55 (34%), Positives = 21/55 (38%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
APA A A A A A A A A A A E PAP +A A+
Sbjct: 108 APAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 35.1 bits (81), Expect = 0.056
Identities = 19/55 (34%), Positives = 21/55 (38%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
RA A A+ A A AE A A A A A A P AP E+ A
Sbjct: 105 DRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAA 159
Score = 35.1 bits (81), Expect = 0.059
Identities = 21/68 (30%), Positives = 22/68 (32%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A A P A A A A+ A A A PA A A A APA A P
Sbjct: 93 AGEAGLPLLEARDRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAP 152
Query: 491 PPAEAPPA 498
P
Sbjct: 153 APEAVAAQ 160
Score = 33.9 bits (78), Expect = 0.14
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 365 GAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
AP A+ A A A AP A A A APAA AP PP P A A
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 33.9 bits (78), Expect = 0.15
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
AP A+ A A A APA A A A A A A + PPA A
Sbjct: 108 APAAKAADEAAAAAAEAAAPAA-AAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 32.8 bits (75), Expect = 0.40
Identities = 19/55 (34%), Positives = 21/55 (38%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
AP A+ A A A APAA A A P A P AP P A +
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQS 161
Score = 32.4 bits (74), Expect = 0.48
Identities = 16/55 (29%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 440 GAPAPPAEGAPRAEGA-PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
A E A A A PA A A A APA A P P
Sbjct: 109 PAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
Score = 32.0 bits (73), Expect = 0.65
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
AP A+ A A A A APA A A A AP P PA A+
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEP---PPAPAPEAVAAQSQ 162
Score = 30.5 bits (69), Expect = 1.6
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
AP A+ A A A A A P A A A A P A AP APAP A
Sbjct: 107 RAPAAKAADEAAAAAAEAA-APAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
Score = 30.1 bits (68), Expect = 2.4
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 371 GAPPAEGAPPAEGAPPAEGAP-PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
AP A+ A A A AP A A AA APA A PP AP A A
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 29.3 bits (66), Expect = 4.5
Identities = 23/58 (39%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP-AEGAPAPPAEGAPAPPADAPPA 487
A A A E A A AP A A AE A A P A AP PP AP A
Sbjct: 108 APAAKAADEAAAAAAEAAAPAAAAA--AEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/51 (33%), Positives = 18/51 (35%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
A A+ A A A A A A AP E A AE A E A
Sbjct: 20 AAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKA 70
Score = 36.6 bits (85), Expect = 0.021
Identities = 14/44 (31%), Positives = 15/44 (34%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A A A + AA A E A AE A AE A
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQA 62
Score = 36.6 bits (85), Expect = 0.022
Identities = 12/56 (21%), Positives = 13/56 (23%), Gaps = 5/56 (8%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A A+ A A A A A P E A A E
Sbjct: 20 AAFASAEAAAEAHHASAAA-----AAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKA 70
Score = 35.1 bits (81), Expect = 0.077
Identities = 10/48 (20%), Positives = 11/48 (22%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
A + A A A AP E A A G
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGH 66
Score = 34.3 bits (79), Expect = 0.12
Identities = 11/43 (25%), Positives = 12/43 (27%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
A + A A A AP E A A AE
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQ 61
Score = 34.3 bits (79), Expect = 0.13
Identities = 10/54 (18%), Positives = 11/54 (20%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
A + A A A AP E A G G
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKAGD 72
Score = 33.9 bits (78), Expect = 0.15
Identities = 12/49 (24%), Positives = 13/49 (26%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
+ A A A A A A A G A AE A
Sbjct: 16 NQNDAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEG 64
Score = 33.9 bits (78), Expect = 0.16
Identities = 13/48 (27%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
A A A + A A PA A A A AEG
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPA--GEHGAAVHAEAAAHAEQAEG 64
Score = 33.9 bits (78), Expect = 0.18
Identities = 10/44 (22%), Positives = 11/44 (25%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
A + A A A AP E AA A
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQA 62
Score = 33.6 bits (77), Expect = 0.24
Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
A A + A APA E A A AE A
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHG-AAVHAEAAAHAEQA 62
Score = 33.2 bits (76), Expect = 0.28
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
+ A + A A + A A AP E A A A
Sbjct: 16 NQNDAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHA 59
Score = 33.2 bits (76), Expect = 0.32
Identities = 14/44 (31%), Positives = 15/44 (34%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
A + A A A APA E A AE AE A
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQA 62
Score = 32.4 bits (74), Expect = 0.48
Identities = 12/51 (23%), Positives = 14/51 (27%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A A A + A A GA A A A+ E A
Sbjct: 20 AAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKA 70
Score = 31.6 bits (72), Expect = 0.79
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
A A A A A A APA A AE A AE A E A
Sbjct: 19 DAAFASAEAAAEAHHASAAA-AAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKA 70
Score = 31.6 bits (72), Expect = 0.94
Identities = 11/49 (22%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
A A A A A AP E AA A
Sbjct: 19 DAAFASAEAAAE-AHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGH 66
Score = 31.6 bits (72), Expect = 1.0
Identities = 13/56 (23%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
A + A A AA APA E A A G G
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPA--GEHGAAVHAEAAAHAEQAEGGHEEKAGD 72
Score = 31.3 bits (71), Expect = 1.2
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ A + A A A A A + A
Sbjct: 16 NQNDAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHA 53
Score = 31.3 bits (71), Expect = 1.2
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A + AE A A A A A AE+A
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAH 58
Score = 30.1 bits (68), Expect = 2.7
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPA-PPADAPPAEPAPPAEAPPA 498
A A A A A A A APA A AE A AE
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEG 64
Score = 29.7 bits (67), Expect = 3.2
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A A A A A A A PA A A AEA
Sbjct: 19 DAAFASAEAAAEAHHASAAAAAAAPAGEHGA--AVHAEAAAHAEQAE 63
Score = 29.3 bits (66), Expect = 5.3
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
+ A + A A A A PA G A A+
Sbjct: 16 NQNDAAFASAEAAAEAHHASAAAAAAAPA-GEHGAAVHAEAAAHAEQAEG 64
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 39.9 bits (93), Expect = 0.002
Identities = 27/76 (35%), Positives = 28/76 (36%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
PA A P PP A PA A PP PAA AP P + APP A
Sbjct: 33 LPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPP 92
Query: 456 PPAEGAPAPPAEGAPA 471
PP APP
Sbjct: 93 PPPVDPNAPPPPAPEP 108
Score = 38.0 bits (88), Expect = 0.008
Identities = 28/83 (33%), Positives = 28/83 (33%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
GA A PA PP A APAA P PPA P P P A PPP
Sbjct: 25 GASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPP 84
Query: 425 AEGAPAAEGAPAPAEGAPAPPAE 447
A P P P E
Sbjct: 85 PADPNAPPPPPVDPNAPPPPAPE 107
Score = 37.6 bits (87), Expect = 0.010
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
A+ AP P A AP A PP AP P P PA P
Sbjct: 32 ALPATANADPAPPPPP-PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
Query: 484 APPAEPAPPAEAPPAESA 501
PP P A PPA
Sbjct: 91 PPPPPVDPNAPPPPAPEP 108
Score = 37.6 bits (87), Expect = 0.011
Identities = 25/84 (29%), Positives = 25/84 (29%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
GA A PA PP A AP A P AP P P A PP
Sbjct: 25 GASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPP 84
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAP 442
P P AP P P
Sbjct: 85 PADPNAPPPPPVDPNAPPPPAPEP 108
Score = 36.8 bits (85), Expect = 0.018
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP-ADAPPAEPAPP 492
A A A+ AP PP A AP A P PPA P + APP A P P PP
Sbjct: 35 ATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94
Query: 493 AEAPPAESAPA 503
P A PA
Sbjct: 95 PVDPNAPPPPA 105
Score = 36.8 bits (85), Expect = 0.018
Identities = 26/74 (35%), Positives = 28/74 (37%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
A PA A PAPP A AP P PP AP P P PPA+P
Sbjct: 29 VAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADP 88
Query: 490 APPAEAPPAESAPA 503
P P +AP
Sbjct: 89 NAPPPPPVDPNAPP 102
Score = 36.0 bits (83), Expect = 0.032
Identities = 27/85 (31%), Positives = 27/85 (31%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
PA PP A AP A PP APPA AP A
Sbjct: 33 LPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPP 92
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEG 433
PP APP AP P A G
Sbjct: 93 PPPVDPNAPPPPAPEPGRIDNAVGG 117
Score = 35.6 bits (82), Expect = 0.044
Identities = 23/68 (33%), Positives = 23/68 (33%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
P P A AP A PP APPA APP A P P A
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100
Query: 405 PPAEGPPP 412
PP P P
Sbjct: 101 PPPPAPEP 108
Score = 34.9 bits (80), Expect = 0.082
Identities = 28/84 (33%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
A PA PP A AP A PP APPA P P PPP
Sbjct: 32 ALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAP-------QPDDPNAAPPPP 84
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAP 437
P A PPP + AP P
Sbjct: 85 PADPNAPPPPPVDPNAPPPPAPEP 108
Score = 34.1 bits (78), Expect = 0.12
Identities = 23/73 (31%), Positives = 23/73 (31%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P P A A AP A PP APPA APP A P PP A
Sbjct: 45 PPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPP 104
Query: 403 PAPPAEGPPPAEG 415
P G
Sbjct: 105 APEPGRIDNAVGG 117
Score = 31.8 bits (72), Expect = 0.81
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A A A+ APP A APA P P PPA P +P P APP
Sbjct: 28 AVAIALPATANADPAPPPPPPSTAAAAPAPAAP--PPPPPPAAPPAPQPDDPNAAPPPPP 85
Query: 501 AP 502
A
Sbjct: 86 AD 87
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 39.9 bits (93), Expect = 0.002
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 1/137 (0%)
Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
RR + A DG+ ++ P PP P P A P +
Sbjct: 274 KRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEP-D 332
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
GA AE A+ A + ++G A+ P + A A+ G+P
Sbjct: 333 GARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTT 392
Query: 449 APRAEGAPPAEGAPAPP 465
+ R +P AP PP
Sbjct: 393 SLRHMPSPSVTSAPEPP 409
Score = 39.9 bits (93), Expect = 0.003
Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 4/141 (2%)
Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP----PA 369
S+ P K + +A+ ET E PA PP P P
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPE 325
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
G +GA AE PA+ A ++ P + A + +
Sbjct: 326 AGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGS 385
Query: 430 AAEGAPAPAEGAPAPPAEGAP 450
P+P AP
Sbjct: 386 PPLDLTTSLRHMPSPSVTSAP 406
Score = 36.8 bits (85), Expect = 0.024
Identities = 22/146 (15%), Positives = 33/146 (22%), Gaps = 4/146 (2%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP---PAEGPP 411
+ P + A A G E PA+ P P P P
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASL-PPPPVRRPRVKHP 324
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
A P A PA ++G+ + + + A + +
Sbjct: 325 EAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFG 384
Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPP 497
P P E P
Sbjct: 385 SPPLDLTTSLRHMPSPSVTSAPEPPS 410
Score = 36.4 bits (84), Expect = 0.028
Identities = 21/136 (15%), Positives = 30/136 (22%), Gaps = 7/136 (5%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
A A + P + P P P G +GA A
Sbjct: 280 AGAMRAAAGETADLADDDGSEHSDPEPLPASLPP--PPVRRPRVKHPEAGKEEPDGARNA 337
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA----PPAEGAPAPPAEGAPAPPAE 475
EA PA+ A + + + P + A + P
Sbjct: 338 EAKEPAQPA-TSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRH 396
Query: 476 GAPAPPADAPPAEPAP 491
AP P
Sbjct: 397 MPSPSVTSAPEPPSIP 412
Score = 36.0 bits (83), Expect = 0.045
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 6/131 (4%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA----PPAEAPPPAEGAP 429
A +G+ ++ P P + PPP P A P +GA
Sbjct: 277 SRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEP-DGAR 335
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
AE PA+ A + ++G+ A+ P A + + P
Sbjct: 336 NAEAKE-PAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSL 394
Query: 490 APPAEAPPAES 500
+
Sbjct: 395 RHMPSPSVTSA 405
Score = 35.2 bits (81), Expect = 0.078
Identities = 22/137 (16%), Positives = 31/137 (22%), Gaps = 9/137 (6%)
Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPP----- 368
S + + + E EP P P P P A P
Sbjct: 277 SRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEPDGARN 336
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
AE PA+ A + G+ + A + + P
Sbjct: 337 AEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTT---- 392
Query: 429 PAAEGAPAPAEGAPAPP 445
AP PP
Sbjct: 393 SLRHMPSPSVTSAPEPP 409
Score = 32.5 bits (74), Expect = 0.49
Identities = 21/134 (15%), Positives = 26/134 (19%), Gaps = 3/134 (2%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP--PAEGAPPAEAPPPAEGAPA 430
AP A P PA PP P + A
Sbjct: 267 SLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEA 326
Query: 431 AEGAPAPAEGAPA-PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ P A A A PA+ A + P A + D P
Sbjct: 327 GKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSP 386
Query: 490 APPAEAPPAESAPA 503
Sbjct: 387 PLDLTTSLRHMPSP 400
Score = 30.2 bits (68), Expect = 2.9
Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
R + H E EP DGA AE PA+ A ++G+ A+
Sbjct: 317 RRPRVKHPEAGKEEP--------DGARNAEAKEPAQPATSTS----SKGSSSAQNKDSGS 364
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
P + A AA G PP + P A E P
Sbjct: 365 TGPGSSLA-AASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412
Score = 29.5 bits (66), Expect = 5.2
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 6/94 (6%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
AP + AA A+ + ++ P PA P P
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPL-----PASLPPPPVRRPR 320
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P G P A AE PA+ + S+
Sbjct: 321 VKHPEAGK-EEPDGARNAEAKEPAQPATSTSSKG 353
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 39.3 bits (91), Expect = 0.003
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
GA A P P A + APP + A P P A AA+ P
Sbjct: 89 GARDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQ 148
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
A+ AP P + AA PP
Sbjct: 149 ADEAPAHN--PESVPTRAARETTEANRPTATPPQ 180
Score = 37.4 bits (86), Expect = 0.013
Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 3/96 (3%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
+G A P + P A + AP P P A A E
Sbjct: 88 QGARDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGE 147
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A PA + P A P + P
Sbjct: 148 QADEAPAHNPESVPT---RAARETTEANRPTATPPQ 180
Score = 37.0 bits (85), Expect = 0.018
Identities = 18/80 (22%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE---GAPPAEG 460
P A P + APP + P P A A G A+G E P +
Sbjct: 102 TPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNPESVP 161
Query: 461 APAPPAEGAPAPPAEGAPAP 480
A P P
Sbjct: 162 TRAARETTEANRPTATPPQS 181
Score = 35.4 bits (81), Expect = 0.054
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P A + APP + A P P A A+ P + A + AP P +
Sbjct: 102 TPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAP--AHNPES 159
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPA 438
A A A + A
Sbjct: 160 VPTRAARETTEANRPTATPPQSSSA 184
Score = 34.3 bits (78), Expect = 0.11
Identities = 24/94 (25%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAP----APPAEGPPPAEGAPPAEAPPPAEGAPAA 431
+GA A P P A + AP A P P A A+A P + A
Sbjct: 88 QGARDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGE 147
Query: 432 EGAPAPAEGAPAPPAEGAPRA-EGAPPAEGAPAP 464
+ APA + P A E P P
Sbjct: 148 QADEAPAHNPESVPTRAARETTEANRPTATPPQS 181
Score = 29.3 bits (65), Expect = 4.7
Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
R A E P D APP + A P P A A+ P + A +
Sbjct: 91 RDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQAD 150
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
P + A E P PP + A
Sbjct: 151 EAPAHNPESVPTRAARET----TEANRPTATPPQSSSA 184
>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP. This family of
genes is always found in type III secretion operons,
althought its function in the processes of secretion and
virulence is unclear. Hpa stands for Hrp-associated
gene, where Hrp stands for hypersensitivity response and
virulence.
Length = 201
Score = 38.3 bits (89), Expect = 0.003
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG-APAPPAEGAPRAEGAPPAEGAPAP 464
+G A AP A P P A+ A AP P E P + P A
Sbjct: 1 IIQGARLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTR 60
Query: 465 PAEGAPAPPAEGAPAPPADAPPAE 488
++ P P + PA P D P A
Sbjct: 61 ASDPPPEAPTDADPAQPPDDPDAS 84
Score = 27.9 bits (62), Expect = 8.7
Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
APAD A PA P + A P E PP + P A A
Sbjct: 11 APADPARPARRRTPLAQLRRRDALAYA-PPPRPEPPPPCDEDRPEPRADT----RASDPP 65
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
P + P P A A A A
Sbjct: 66 PEAPTDADPAQPPDDPDASAHTAAIASGAA 95
Score = 27.9 bits (62), Expect = 8.8
Identities = 19/79 (24%), Positives = 23/79 (29%)
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
+ A APA PA A A PP P P E P P A+
Sbjct: 1 IIQGARLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTR 60
Query: 478 PAPPADAPPAEPAPPAEAP 496
+ P P + P
Sbjct: 61 ASDPPPEAPTDADPAQPPD 79
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 40.0 bits (93), Expect = 0.004
Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 5/191 (2%)
Query: 14 EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
E AA S E K+ +L++L + + + + + ++ + + KK L +
Sbjct: 161 EEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYY--QLKE 218
Query: 74 EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDRE 133
+ E+ L+ ++ +ER ++ ++EI QE + L + E E
Sbjct: 219 KLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEE 278
Query: 134 IMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKRE 193
K + EL + + + K + + K +E + K +KK +
Sbjct: 279 EKEKKLQEEELKLLAKEEEELKSELLKLERRK---VDDEEKLKESEKELKKLEKELKKEK 335
Query: 194 FSMEDAEKEKK 204
+E+ EKE K
Sbjct: 336 EEIEELEKELK 346
Score = 31.1 bits (70), Expect = 1.6
Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 10/211 (4%)
Query: 1 MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRR-------MEEASGARRKK 53
EE E + E+E + +L +LER++ + + +++ +K+
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLC 113
E +K+L+ L K+ AEE + EQ + E+ ++E K + L
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394
Query: 114 QEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKL 173
+E + E L ++ + E K+ + + + K K + +L
Sbjct: 395 EEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEEL 454
Query: 174 QKKAAEFNFRSQLKAVKKREFSMEDAEKEKK 204
+K+A + + K K+ + K K
Sbjct: 455 EKQALKLL---KDKLELKKSEDLLKETKLVK 482
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 38.4 bits (90), Expect = 0.004
Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P A A P + P EGA A A A + P P E AP P + P
Sbjct: 57 PAATQALPTQPP---EGAAEAVRAGDAAAPSLDPATVAPP--NTPVEPEPAPVEPPKPKP 111
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P P P P E A
Sbjct: 112 VEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144
Score = 35.0 bits (81), Expect = 0.052
Identities = 28/102 (27%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
PKP D P A A P + A A A A P P P
Sbjct: 45 PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV 104
Query: 403 PAP---PAEGPPPAEGAPPAEAPPPA---EGAPAAEGAPAPA 438
P P E P P PPA E P E AP
Sbjct: 105 EPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 30.4 bits (69), Expect = 1.9
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
+ P A A P + P EGA A A A PA APP P
Sbjct: 51 DEPDMMPAATQALPTQ---PPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE------- 100
Query: 433 GAPAPAEGAPAPPAEG-APRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
PAP E P E P+ + E PAP E P + AP
Sbjct: 101 --PAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 28.8 bits (65), Expect = 6.1
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 243 PLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
P E E PVE P P +P+P + P P PE
Sbjct: 94 NTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP-APKPEP 135
Score = 28.0 bits (63), Expect = 9.8
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 197 EDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEV 256
E A + + P + P EPE A E P P Q VE
Sbjct: 69 EGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVE-A 127
Query: 257 PPPPEPEPEPPVEEIPP 273
PP P+PEP+P VEE
Sbjct: 128 PPAPKPEPKPVVEEKAA 144
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 39.0 bits (92), Expect = 0.004
Identities = 31/116 (26%), Positives = 35/116 (30%), Gaps = 22/116 (18%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA----- 452
EG A E P AP A A AA A A A A+ +P
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLAR 136
Query: 453 ---------EGAPPA--------EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+G+ P E A A A A A A A P A A E P
Sbjct: 137 ELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVP 192
Score = 36.7 bits (86), Expect = 0.023
Identities = 19/52 (36%), Positives = 19/52 (36%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
EG A A E PA A A A AP A AP A A A A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKAS 128
Score = 35.9 bits (84), Expect = 0.048
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
EG A A A P AP PAP A A A A AP A A A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAP----------EPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Query: 490 APPA 493
A PA
Sbjct: 127 ASPA 130
Score = 34.4 bits (80), Expect = 0.12
Identities = 18/55 (32%), Positives = 20/55 (36%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A A A P AP A A A P A AP A A A+ +PA
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAV 131
Score = 33.2 bits (77), Expect = 0.30
Identities = 36/124 (29%), Positives = 37/124 (29%), Gaps = 37/124 (29%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
EGEA A A A PA PA A A A A A APAA A A
Sbjct: 79 EGEAEAAAAAEAAPEAPAPEPAPAAAAA----------AAAAPAAAAAPAAPAAAAAKAS 128
Query: 406 PA---------------EGPPP------------AEGAPPAEAPPPAEGAPAAEGAPAPA 438
PA +G P A A PA A A A A
Sbjct: 129 PAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGE 188
Query: 439 EGAP 442
E P
Sbjct: 189 ERVP 192
Score = 32.8 bits (76), Expect = 0.46
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G+ A E A AE AP PA PAP A A A A AP A +A A
Sbjct: 70 GSVIAVIEEEGEAEAAAAAEAAPEAPAP-EPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 32.5 bits (75), Expect = 0.52
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A A A A APAP A A A APA A AP A A A+A PA
Sbjct: 79 EGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAA-APAAPAAAAAKASPA 130
Score = 32.5 bits (75), Expect = 0.52
Identities = 37/117 (31%), Positives = 40/117 (34%), Gaps = 28/117 (23%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA----- 393
E GE + A A PA PA A A A PA A PA A A A PA
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPA--AAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLA 135
Query: 394 ----------EGAP-----------AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
+G+ AA A AP A A APPA A E P
Sbjct: 136 RELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVP 192
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 39.1 bits (92), Expect = 0.005
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP----P 418
A G A A AP P A AA A + P AP
Sbjct: 182 ASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALPDFLAPQLATL 241
Query: 419 AEAPPPAEG 427
+ PP +G
Sbjct: 242 VDRPPSGDG 250
Score = 34.1 bits (79), Expect = 0.19
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPP-AEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
A P + E P A G A A AP P G A A A A
Sbjct: 165 ARPGDEYDVLEALPDSVASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAA--RAAAAAAA 222
Query: 449 APRAEGAPPAEGAP--APPAEGAPA 471
+ A P AP A + P+
Sbjct: 223 KKAKKKALPDFLAPQLATLVDRPPS 247
Score = 32.2 bits (74), Expect = 0.79
Identities = 23/89 (25%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 412 PAEGAPPAEAPPP--AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P + EA P A G A A A +G P G A A A A
Sbjct: 167 PGDEYDVLEALPDSVASGRTMA--AIAAGKGRAPKPFMTPKGNAGLAAAARAAA-----A 219
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A A P P + A + PP+
Sbjct: 220 AAAKKAKKKALPDFLAP-QLATLVDRPPS 247
Score = 30.6 bits (70), Expect = 2.4
Identities = 13/55 (23%), Positives = 14/55 (25%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
A G A A AP P A A A + P AP
Sbjct: 182 ASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALPDFLAP 236
Score = 29.5 bits (67), Expect = 5.7
Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
A G A A +G P P G A A A A+ P
Sbjct: 182 ASGRTMAAIAA-------GKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALPDFL 234
Query: 441 AP--APPAEGAPRAEG 454
AP A + P +G
Sbjct: 235 APQLATLVDRPPSGDG 250
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 38.9 bits (91), Expect = 0.006
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
A E E +P PP + A A A +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 38.2 bits (89), Expect = 0.009
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
A AP + E + PP + PA + A ++E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQ--APAGRVEREKTARSSE 276
Score = 37.4 bits (87), Expect = 0.017
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 4/57 (7%)
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A AP+ + E P AP A +ES
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSP----KISVPPVLKLAAEQAPAGRVEREKTARSSES 277
Score = 36.2 bits (84), Expect = 0.037
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
A AP + E P PP +AP G E +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPA---GRVEREKTARSSE 276
Score = 35.9 bits (83), Expect = 0.047
Identities = 6/48 (12%), Positives = 6/48 (12%)
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A AP AE A
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTA 272
Score = 35.1 bits (81), Expect = 0.086
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
A P + E E +P P A PA R + A +E
Sbjct: 225 ETAVAAPQEKAEETTEVV---EVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 34.7 bits (80), Expect = 0.11
Identities = 9/55 (16%), Positives = 12/55 (21%), Gaps = 3/55 (5%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
A AP + E E +P P G E +
Sbjct: 225 ETAVAAPQEKAEETTE---VVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 34.3 bits (79), Expect = 0.14
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
A A E E P P + A A + A +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 33.5 bits (77), Expect = 0.25
Identities = 8/52 (15%), Positives = 10/52 (19%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
A E A E P P + A +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 33.5 bits (77), Expect = 0.27
Identities = 8/51 (15%), Positives = 12/51 (23%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
A AP E +P+ P + A G +
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 33.5 bits (77), Expect = 0.28
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
A AP + E E +P P + A G E +
Sbjct: 225 ETAVAAPQEKAEETTE---VVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 33.5 bits (77), Expect = 0.28
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
A AP + E E +P P + A A E +
Sbjct: 225 ETAVAAPQEKAEETTE---VVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 33.5 bits (77), Expect = 0.31
Identities = 8/54 (14%), Positives = 10/54 (18%), Gaps = 2/54 (3%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
E E +P P A G A +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKL--AAEQAPAGRVEREKTARSSE 276
Score = 32.8 bits (75), Expect = 0.49
Identities = 7/51 (13%), Positives = 10/51 (19%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
A AP + P PP + A +
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 30.9 bits (70), Expect = 1.9
Identities = 6/55 (10%), Positives = 8/55 (14%), Gaps = 4/55 (7%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A AP AE + A +
Sbjct: 225 ETAVAAPQEKAEETT----EVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
Score = 30.1 bits (68), Expect = 3.2
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
A AP + E + A PA + A ++E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 29.3 bits (66), Expect = 6.2
Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
A A E E +P P AE AP A +E
Sbjct: 227 AVAAPQEKAEETTEVVEVSPKISVPPVL--KLAAEQAPA---GRVEREKTARSSE 276
Score = 29.3 bits (66), Expect = 6.4
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 31/164 (18%)
Query: 244 LPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSID 303
L +GE P + + ++ P + L + L + + +
Sbjct: 126 LEAKGETPSAVTRLSVVAIQEKSEPQDESP-------RSQSGLRIILSRLKAGEVDLLEE 178
Query: 304 DL--------VEKLMSAVSATPQPLLKSVVKDTLR---------RQASHEETEGGEPKPE 346
+L V K ++ AT L SV +D + Q + E +
Sbjct: 179 ELGNLGTLTDVVKGADSLEAT---LPGSVAEDDITAVLCFVIEADQITFETAVAAPQEKA 235
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
E E +P P + A A E A +
Sbjct: 236 EETTE----VVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 38.5 bits (90), Expect = 0.006
Identities = 19/82 (23%), Positives = 27/82 (32%)
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P+ P + P + + +E A + GAP A G P
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAP 264
Query: 461 APAPPAEGAPAPPAEGAPAPPA 482
+ AP A A P A + A
Sbjct: 265 SSAPATAPAAAAPQAAATSSSA 286
Score = 32.3 bits (74), Expect = 0.62
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG-------APA 479
G P+ + APAP P + P + GAP A G P
Sbjct: 205 GTPSVQPAPAPQ--GDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPT 262
Query: 480 PPADAPPAEPAPPAEAPPAESAPA 503
P+ AP PA A A S+ A
Sbjct: 263 APSSAPATAPAAAAPQAAATSSSA 286
Score = 31.6 bits (72), Expect = 0.97
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 395 GAPAAEGAPAPPAEGPP---------PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
G P+ + APAP + P GAP + A G +E P P
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAP 264
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
+ AP A A P A + A G
Sbjct: 265 SS-------APATAPAAAAPQAAATSSSASG 288
Score = 30.8 bits (70), Expect = 1.8
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE----GAPPAEGAPAAEGA-PAPPA 407
G P + AP +G + P GAP GAP EG+ P P A
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTLKSEDPT-GAPVTSSGFLGAPTTLAPGVLEGSEPTPTA 263
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEG 433
PA AP A AP A + +A G
Sbjct: 264 PSSAPAT-APAAAAPQAAATSSSASG 288
Score = 30.4 bits (69), Expect = 2.5
Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE----GAPAPPAEGPPPAEGAPPAE 420
G P + AP +G + P GAP GAP A G EG+ P
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTLKSEDPT-GAPVTSSGFLGAPTTLAPGVL--EGSEPTP 261
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P + A A A AP A + A G
Sbjct: 262 TAPSSAPATAP-AAAAPQAAATSSSASG 288
>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486). This
family is made up of members from various Burkholderia
spp. The function is unknown.
Length = 245
Score = 38.0 bits (88), Expect = 0.007
Identities = 42/156 (26%), Positives = 47/156 (30%), Gaps = 10/156 (6%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
P P + A G P A AP A E
Sbjct: 18 PGHPVPARSSSADAAGPHDDAAEPVLTDQIVPGAEQAASAAPVHAAREATADPEFVAVEP 77
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAP--APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
P PA A P APA GA AE A A A A A+ APPA
Sbjct: 78 VPTPH--VPAVALPGDTDAPAEPGAAPHVVAERAAAMQAP----LPSALAADDPQAPPAG 131
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A + AP A P A A P A A ++ A
Sbjct: 132 ATAADAGD--AAPDATPPAAGDASPPAAAQAAASAA 165
Score = 36.1 bits (83), Expect = 0.032
Identities = 45/177 (25%), Positives = 55/177 (31%), Gaps = 6/177 (3%)
Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA 369
M+ + + P L V+ A + P + P GA A A P
Sbjct: 1 MTQANDSSIPTLTDVLVPGHPVPARSSSADAAGPHDDAAEPVLTDQIVPGAEQAASAAPV 60
Query: 370 EGAPPAEGAPPAEGAPPAEGA-PPAEGAPAAEGAPAPPAEGPP-PAEGAPPAEAPPPAEG 427
A A P P PA P APA P P AE A +AP P+
Sbjct: 61 HAAREATADPEFVAVEPVPTPHVPAVALPGDTDAPAEPGAAPHVVAERAAAMQAPLPSAL 120
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A A A A A+ A A P A P A A + A DA
Sbjct: 121 A----ADDPQAPPAGATAADAGDAAPDATPPAAGDASPPAAAQAAASAAAALTDLDA 173
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 37.0 bits (86), Expect = 0.009
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
A+ A E +A+R + E E +R E ++ E+ G R+++ + ER+KK RK+
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 73 AEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQR--IYNLE--AIKY 128
E+ ++EQE + + E G K + D +E+ + Y + + NLE + ++
Sbjct: 65 EEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLEDFINYIKLKKVVNLEELSAEF 124
Query: 129 ELDREIM---LKDFEITELGKQVNDLRGKFVR 157
L E + ++D E V D RGK++
Sbjct: 125 GLKTEDVIERIQDLEAQGSITGVIDDRGKYIY 156
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 38.0 bits (88), Expect = 0.009
Identities = 24/84 (28%), Positives = 26/84 (30%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
G P ++ A A P A A PA A A A AA P P P
Sbjct: 249 GGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLP 308
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPA 436
A P A PA PA
Sbjct: 309 DVPQVAPVAAPAAPEVPAVPVVPA 332
Score = 36.9 bits (85), Expect = 0.020
Identities = 22/89 (24%), Positives = 24/89 (26%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
G P ++ A A P A A PA A A A A P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVL 307
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
P AP A P PAA
Sbjct: 308 PDVPQVAPVAAPAAPEVPAVPVVPAAPQV 336
Score = 36.5 bits (84), Expect = 0.025
Identities = 27/83 (32%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P A + P A A A APA PA A A A P P
Sbjct: 256 KPKSKAAGSNLPAVPNVAADAGSAAAPA--VPAAAAAVAQAAPSVPQVPNVAVLPDVPQV 313
Query: 471 APPAEGAPAPPADAPPAEPAPPA 493
AP A A AP A P PA P
Sbjct: 314 APVAAPA-APEVPAVPVVPAAPQ 335
Score = 35.3 bits (81), Expect = 0.068
Identities = 21/80 (26%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA----- 446
+ A PA P A PA A A AA P A P
Sbjct: 256 KPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVAP 315
Query: 447 EGAPRAEGAPPAEGAPAPPA 466
AP A P PA P
Sbjct: 316 VAAPAAPEVPAVPVVPAAPQ 335
Score = 35.0 bits (80), Expect = 0.087
Identities = 24/93 (25%), Positives = 24/93 (25%), Gaps = 4/93 (4%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
GGE A P A A PA A A A A P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLP-AVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAV 306
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P P P A AP A P AP
Sbjct: 307 ---LPDVPQVAPVAAPAAPEVPAVPVVPAAPQV 336
Score = 33.8 bits (77), Expect = 0.21
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
G P ++ A A P A A PA A AA A A P+ P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVL 307
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
P APAA PA PA P
Sbjct: 308 PDVPQVAPVAAPAAPEVPA-VPVVPAAPQ 335
Score = 33.4 bits (76), Expect = 0.27
Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
E + A PA P G+ A PA A A A P+ A P
Sbjct: 251 EDLIIKPKSKAAGSNLPAVPNV--AADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLP 308
Query: 486 PAEPAPPAEAPPAESAPA 503
P AP A PA
Sbjct: 309 DVPQVAPVAAPAAPEVPA 326
Score = 33.4 bits (76), Expect = 0.27
Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
G P ++A A A A + APA PA A A+ AP P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAV- 306
Query: 468 GAPAPPAEGAPAPPADAP--PAEPAPPA 493
P P A PA AP PA P PA
Sbjct: 307 -LPDVPQVAPVAAPA-APEVPAVPVVPA 332
Score = 28.8 bits (64), Expect = 7.2
Identities = 24/92 (26%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
G P ++ A A P A A G+ A PA A A A + P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLPAVPNVAADA--GSAAAPAVPAAAAAVAQAAPSVPQVPNVA 305
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P A A AP A P P A
Sbjct: 306 VLPDVPQVAPVA-APAAPEVPAVPVVPAAPQV 336
Score = 28.8 bits (64), Expect = 7.6
Identities = 23/93 (24%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
G P ++ A A P G+ AA PA A A P
Sbjct: 248 GGGEDLIIKPKSKAAGSNLPAVPNV--AADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVA 305
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAE-GAPRAEGA 455
P APA AP PA P A
Sbjct: 306 VLPDVPQVAPVAAPA--APEVPAVPVVPAAPQV 336
Score = 28.4 bits (63), Expect = 8.7
Identities = 15/62 (24%), Positives = 16/62 (25%)
Query: 442 PAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
P + PA P A A A AP A A A A S
Sbjct: 239 PGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSV 298
Query: 502 PA 503
P
Sbjct: 299 PQ 300
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 37.6 bits (87), Expect = 0.010
Identities = 33/149 (22%), Positives = 39/149 (26%), Gaps = 3/149 (2%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
G A+ PA G AE PP P P A+ A
Sbjct: 53 GATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQRVEVQGDLNNAAVQ 112
Query: 407 AEGPPP--AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
+ PA AP + AE PA +A P E A
Sbjct: 113 PQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAE-RPAITRPVRAQAVSEPAVEPKAAK 171
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
A A +PA PPA A
Sbjct: 172 TATATEAKVQTASPAQTPATPPAGKGAAA 200
Score = 36.5 bits (84), Expect = 0.024
Identities = 37/159 (23%), Positives = 44/159 (27%), Gaps = 8/159 (5%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
E A A+ + GA A PA G AE PP P P
Sbjct: 35 STSSSEAPASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQEP--- 91
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
A + +G A P + A P PA AP + P
Sbjct: 92 --LAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTST--LPTEPATVAPVRNASVPTAE 147
Query: 461 APAPPAEGAPAPPAEGAPAP-PADAPPAEPAPPAEAPPA 498
PA +E A P A A A A PA
Sbjct: 148 RPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASPA 186
>gnl|CDD|234476 TIGR04116, CXXX_rpt_assoc, CXXX repeat peptide modification system
protein. Members of this protein family occur strictly
in the presence of a peptide modification radical SAM
enzyme described by model TIGR04115 and some small
peptide in which, for a stretch, every fourth amino acid
is Cys. Cysteine residues usually are flanked by
residues with sterically small side chains, as with many
radical SAM-modified peptides. Many of the latter are
recognized by model TIGR04114.
Length = 90
Score = 35.1 bits (81), Expect = 0.012
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 27/100 (27%)
Query: 52 KKGFMTPERKKKLRLLLRKKAA-EELK---REQERRALER----KRVIDERCGEPKDTDD 103
G +T E + ++ L K A+ EEL E ++VI++
Sbjct: 1 IVGKVTEEERNEIEELFEKIASLEELIKILSNDPLEVEEFNELYEKVINDL--------- 51
Query: 104 MAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLK---DFE 140
E Q +W IY KY ++ K DFE
Sbjct: 52 ---GETKKKYQNWWDDIY----EKYNWEKNDGEKWIIDFE 84
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 37.6 bits (87), Expect = 0.012
Identities = 29/104 (27%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
PA AP G A P P + + A A+ P P A+ R
Sbjct: 127 PATVAPVRNGN-ASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKR 185
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
E A P AP A PAP AP A PA+ A
Sbjct: 186 TEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAA 229
Score = 32.6 bits (74), Expect = 0.48
Identities = 29/124 (23%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
PA AP G + + A P P + + P A P
Sbjct: 127 PATVAPVRNGNASRQ-TAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKR 185
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
PA P AP A PAP AP +PA P A +
Sbjct: 186 TEPAAPVASTK----APAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLK 241
Query: 500 SAPA 503
SAP+
Sbjct: 242 SAPS 245
Score = 32.2 bits (73), Expect = 0.56
Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA-----PAPPAEGAPRAEGAPP 457
P PA P G + A PA + P A+ P+ P
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PA P AP A PAP A A + A + A
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAA 229
Score = 28.8 bits (64), Expect = 6.5
Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 14/122 (11%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
PA AP G + A PA P + A P A + P
Sbjct: 127 PATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRT 186
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P A A APAA PAP E A P + A PA+ P A G
Sbjct: 187 EPAAPVASTK--------APAATSTPAPKETATTAP------VQTASPAQTTATPAAGGK 232
Query: 470 PA 471
A
Sbjct: 233 TA 234
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 37.9 bits (88), Expect = 0.013
Identities = 28/95 (29%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 404 APPAEGPPPAEGAPPAEAP-PPAEGAPAAEGAP-APAEGAPAPPAEGAPRAEGAPPAEGA 461
A P E A AP EAP A PA E P A A + + RA P
Sbjct: 431 AHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVKPIPVIAP 490
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A PA A PA PP D +
Sbjct: 491 AAYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRA 525
Score = 34.1 bits (78), Expect = 0.16
Identities = 31/94 (32%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P + A P E A AP E APA A P E P AE A EG
Sbjct: 426 PTGQLAHPIEDRDEAIMAPLPE--------APAKSAIEEPADELEPVAEAAET---EGKG 474
Query: 471 APPAEGAPAP-PADAPPAEPAPPAEAPPAESAPA 503
+ A P P AP A PA A PA
Sbjct: 475 TDRSARAVKPIPVIAPAAYPASAKTAEPAGFFGR 508
Score = 32.9 bits (75), Expect = 0.37
Identities = 30/109 (27%), Positives = 32/109 (29%), Gaps = 9/109 (8%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
AP + A P E A AP E A A P E P AE A A P
Sbjct: 425 APTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVKP 484
Query: 419 AEAPPPAEGAPAAEGAPAPAEGA-PAPPAEGAPRAEGAPPAEGAPAPPA 466
PA PA A+ A PA P G A
Sbjct: 485 IPVIAPA-------AYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRAT 526
Score = 32.1 bits (73), Expect = 0.79
Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPA-EAPPPAEGAPAA--EGAPAPAEGAPAPPAEG 448
P G A AP + P E A AP P A +A E A A A EG
Sbjct: 413 PVTGRLDAFEWKAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEG 472
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A + P PA PA PP +P + + A
Sbjct: 473 KGTDRSARAVKPIPVIAPAAYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRA 525
Score = 29.1 bits (65), Expect = 7.6
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPA---------EGAPPAEGAPPAEGAPAAEGAPA 404
P A A P E P AE A P AP A A A PA
Sbjct: 444 PLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVKPIPVIAPAAYPASAKTAEPA 503
Query: 405 PPAEGPPPAEGAPPAEAP 422
PP G A
Sbjct: 504 GFFGRPPDDPGVRRDGAA 521
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 37.7 bits (87), Expect = 0.014
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 173 LQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATD 232
L +A + + AV+ E + A E +PE EPE + + P PEPEPEPE +
Sbjct: 382 LNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 441
Query: 233 ASDVED------------GKETPLPPEGEQPPVEEVPPPPEP-----EPEPPVEEIPPTP 275
+D G E+ + E E+ P PE + E V++I P P
Sbjct: 442 PQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEP 501
Query: 276 PSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASH 335
S P + L + SA ++ D L+S Q L+++ + +T+
Sbjct: 502 ASTAEP------IGLFEASSAEFSLAQDTSAYDLVSEPVIEQQSLVQAEIVETVAVVKEP 555
Query: 336 EETEGGEPKPE 346
T+ + P+
Sbjct: 556 NATDNSQLMPQ 566
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 37.7 bits (88), Expect = 0.015
Identities = 45/241 (18%), Positives = 79/241 (32%), Gaps = 73/241 (30%)
Query: 28 KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLR--KKAAEELKREQERRAL 85
+ +RK RR +E +KLR L KK LK + +
Sbjct: 18 DVSAFQRKFVNEVRRCDEVE--------------RKLRKLESKIKKLGIPLKDTGGKPDV 63
Query: 86 ERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELG 145
K+ D+ E+ + I +E L++EI E+ E
Sbjct: 64 P----------PSKEFLDLEEEI-----LDLEAEIKEVEENLESLEKEIN----ELEEWL 104
Query: 146 KQVNDLRGKFVRPILKKVSKYEN---KFAKLQ----------------KKAAEFNFRSQL 186
+++ + F+ L+++S+ N F L+ +K F R
Sbjct: 105 NVLDEEK-SFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFE-RELW 162
Query: 187 KAVK--KREFSMEDAEKEKKPE------WVKEPESKKKRI---------PIPEPEPEPES 229
+A + R+ +E+ ++ K KE K K+I +PE E E
Sbjct: 163 RACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSE 222
Query: 230 A 230
Sbjct: 223 L 223
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 37.7 bits (88), Expect = 0.016
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
+E AE + A E E +E L+ E R+++E R K ER +
Sbjct: 160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQ 214
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
L R+ EL +E+E +++ + + E+E+ L +E +
Sbjct: 215 ALLKEKREYEGYELLKEKEALERQKEAIERQL--------ASLEEELEKLTEEISELEKR 266
Query: 123 LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNF 182
LE I+ L+ EL K++ DL + + +K+ + E + A L++ AE
Sbjct: 267 LEEIEQLLE-----------ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
Query: 183 RSQLKAVKKREFSME-DAEKEKKPEWVKEPESKKKR 217
+ + + E D + E +E E ++KR
Sbjct: 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351
Score = 37.7 bits (88), Expect = 0.016
Identities = 50/291 (17%), Positives = 104/291 (35%), Gaps = 63/291 (21%)
Query: 8 AAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL 67
+ PAE E + +L L+ + + R++E S E +K++ L
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
Query: 68 LRKKAA-----EELKREQERRALERKRVIDERCGEPKDTDDMAED------EIGDLCQEY 116
+++ EEL+ + E + V E +++ ED + DL
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 117 ----WQRIYN-----------LEAIKYELDREIMLKDFE--------------------- 140
I +EA E+++++ E
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
Query: 141 ITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF-----NFRSQLKAVKKREFS 195
I + K++ +L GK + +++ + E L+ + + +QL+ ++++
Sbjct: 849 IKSIEKEIENLNGK-KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Query: 196 MEDAEKEKKPEWVKEPESKKKRI---------PIPEPEPEPESATDASDVE 237
+E A+ EKK + + E ++K + + P E E PE DV+
Sbjct: 908 LE-AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
Score = 33.1 bits (76), Expect = 0.37
Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 15/207 (7%)
Query: 13 AEAAAASAEDEAKRL---------KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKK 63
E + A E E + ++++L + E+ R +EE R K E K++
Sbjct: 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
Query: 64 LRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNL 123
L L + + + + R L+ R E+ + D + + Q + + +L
Sbjct: 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425
Query: 124 EAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFR 183
A ++ +I + E + ++ K + + +SKYE + L+++
Sbjct: 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSKYEQELYDLKEEYDRVEKE 484
Query: 184 -----SQLKAVKKREFSMEDAEKEKKP 205
+L + + + E+ + +
Sbjct: 485 LSKLQRELAEAEAQARASEERVRGGRA 511
Score = 32.7 bits (75), Expect = 0.49
Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 28/228 (12%)
Query: 9 AETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLL 68
E + ++ LER AE R +E+A ER KL +
Sbjct: 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE-----------ERLAKLEAEI 331
Query: 69 RKKAA--EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQE----------Y 116
K A EEL+RE E R ++ +E E K+ + E+ ++ +E Y
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEE-YAELKEELEDLRAELEEVDKEFAETRDELKDY 390
Query: 117 WQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQK- 175
+++ L+ EL RE+ E+ L +++ DL I K+++ E +
Sbjct: 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALE 449
Query: 176 -KAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPE 222
K E+ QL A + KE+ KE ++ + E
Sbjct: 450 IKKQEWK-LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 37.4 bits (86), Expect = 0.018
Identities = 57/292 (19%), Positives = 79/292 (27%), Gaps = 13/292 (4%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIP---PTP 275
P P+P+ + ++ + P P QP P P P + P P
Sbjct: 214 PAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGP 273
Query: 276 PSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASH 335
P P ++L + V L A P +Q
Sbjct: 274 PMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPR 333
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE- 394
E+ P P P + + PP P P+ PP P +
Sbjct: 334 EQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSL 393
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA-------EGAPAAEGAPAPAEGAPAPPAE 447
A PP + P ++ A PP + G P P
Sbjct: 394 PTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFA 453
Query: 448 GAPRAEGAPPAEGAP--APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P G PA G P P + A P A PP A P+ PP
Sbjct: 454 QHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPP 505
Score = 35.8 bits (82), Expect = 0.059
Identities = 33/148 (22%), Positives = 49/148 (33%), Gaps = 1/148 (0%)
Query: 355 PPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
PP+ PP P+ P P+ A P +G+P A P P+ + P+ P
Sbjct: 178 PPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRL 237
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
P P A AP+ + G P P+ P P
Sbjct: 238 PSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPF 297
Query: 474 AEGAPAPPADAPPAEPAPPAEAPPAESA 501
P P++ P + PP++SA
Sbjct: 298 GLAQSQVPPLPLPSQAQPHSHTPPSQSA 325
Score = 33.5 bits (76), Expect = 0.35
Identities = 60/277 (21%), Positives = 87/277 (31%), Gaps = 22/277 (7%)
Query: 225 PEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
P S D D + + PP +VPP P P PPTP + P
Sbjct: 152 PSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAP----PPTPSAQAVPPQ- 206
Query: 285 ELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPK 344
+ P L+SA S PQ L +
Sbjct: 207 -----GSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQ--------PQTASQQS 253
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
P+ AP+ P + P P A P P+ P G ++ P + A
Sbjct: 254 PQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQA 313
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P PP++ A + PP + P A P P + ++ PP P+P
Sbjct: 314 QPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSP 373
Query: 465 ----PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P+ P P + + P PP+ PP + P
Sbjct: 374 FPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMP 410
Score = 30.8 bits (69), Expect = 1.9
Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPP----AEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
PP+ PP + P ++ PP ++ PP P G + G P P
Sbjct: 398 PPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHS--GPPQSPFAQH 455
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P G PA PPP+ P + A P + + P A + G G P PP +
Sbjct: 456 PFTSGGLPAIGPPPS--LPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKE 513
Query: 471 APPAEGAPAPPADAPPAEPAP 491
P E PP P+P
Sbjct: 514 EPLDEAEEPESPPPPPRSPSP 534
Score = 30.0 bits (67), Expect = 3.7
Identities = 47/226 (20%), Positives = 68/226 (30%), Gaps = 2/226 (0%)
Query: 239 GKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASN 298
+ P + PP +P PP +P P P TP P+ K
Sbjct: 311 SQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQG 370
Query: 299 PVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAE 358
P + L + P L + + + + P
Sbjct: 371 PSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQS 430
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
P A P + G P P G PA G P + + PA P + G+ P
Sbjct: 431 LPPKASTHPHS-GLHSGPPQSPFAQHPFTSGGLPAIGPPPSL-PTSTPAAPPRASSGSQP 488
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
+ P+ G A G P P P + A E PP +P+P
Sbjct: 489 PGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSP 534
Score = 28.9 bits (64), Expect = 7.7
Identities = 59/309 (19%), Positives = 89/309 (28%), Gaps = 23/309 (7%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
+ P +R+P P P +P++ AS P + PP P + P
Sbjct: 227 ISAPSLHPQRLPSPHPPLQPQT---ASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGP 283
Query: 268 VEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKD 327
V P+ P + + S + P S + + + L
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPA--- 340
Query: 328 TLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE---GA 384
H + P P+ + PP P P+ PP P +
Sbjct: 341 ---PSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHH 397
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEG---------PPPAEGAPPAEAP--PPAEGAPAAEG 433
PP+ PP + P ++ + PA+ PP A P + PP
Sbjct: 398 PPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPF 457
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
PP+ P A PP P+ P PP + P
Sbjct: 458 TSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLD 517
Query: 494 EAPPAESAP 502
EA ES P
Sbjct: 518 EAEEPESPP 526
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 37.5 bits (86), Expect = 0.019
Identities = 48/295 (16%), Positives = 72/295 (24%), Gaps = 8/295 (2%)
Query: 208 VKEPESKKKRIPIPEPEPEPESAT-DASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEP 266
P S+ P P T +A+ K + P P+ P
Sbjct: 485 DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPT 544
Query: 267 PVEEI-PPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVV 325
+ T P +P T + S S + + + QP + S
Sbjct: 545 GTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSS 604
Query: 326 KDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
T R ++ P G P+ P P G
Sbjct: 605 HSTPRSNSTSTTPLLTSAHPTGGENITEETPS--VPSTTHVSTLSPGPGPGTTSQVSGPG 662
Query: 386 PAEGAPPAEGAPAAEGAPAPPA---EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
+ + EG P P A P + A P + + A
Sbjct: 663 NSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMAS 722
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE-PAPPAEAP 496
P P PP+ + P +PP A P PP + P
Sbjct: 723 TSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHP 777
Score = 35.9 bits (82), Expect = 0.047
Identities = 33/187 (17%), Positives = 46/187 (24%), Gaps = 15/187 (8%)
Query: 313 VSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP----- 367
P + TL H+ T P PA P A P G P
Sbjct: 422 FHKAPDTTKSVIFVYTLVHVEPHKTT--AVPTTPSLPPASTGPTVSTADPTSGTPTGTTS 479
Query: 368 ---PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA---AEGAPAPPAEGPPPAEGAPPAEA 421
P + +P + A A A + + + P A P P A
Sbjct: 480 STLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTA 539
Query: 422 PPPAEGA--PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
P G +P E +P A G + P P
Sbjct: 540 TSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG 599
Query: 480 PPADAPP 486
P+ +
Sbjct: 600 IPSSSHS 606
Score = 29.4 bits (65), Expect = 5.8
Identities = 36/277 (12%), Positives = 62/277 (22%), Gaps = 11/277 (3%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P + P T + + LP + P P P V
Sbjct: 450 PTTPSLPPASTGPTVSTADPT-SGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTT 508
Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
T P+ + V + + +PQ +S V +T
Sbjct: 509 PNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNT 568
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
+ + G+ +P ++ + + P A P G
Sbjct: 569 PVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGE 628
Query: 391 PPAEGAPAAEG-------APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
E P+ +P P G + EG P P +P+
Sbjct: 629 NITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPS 688
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
P+ + P A
Sbjct: 689 APSG---QKTAVPTVTSTGGKANSTTKETSGSTLMAS 722
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 37.4 bits (87), Expect = 0.020
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 14/189 (7%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELK-REQE 81
+ + +L +LE + E++ +EE R +K + + RL KK +EL+ R +
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKE---ELEELRERLKELKKKLKELEERLSQ 611
Query: 82 RRALERKRVIDERCGEPKDTDDMAEDEIGDL-CQEY-----WQRIYNLEAIKYELDREIM 135
L + + E E ++ ++ E E+ L Q + LE EL+ EI
Sbjct: 612 LEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR 671
Query: 136 LKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFS 195
+ I + L + + +++ + + +L KK ++ ++ R+
Sbjct: 672 RELQRIENEEQLEEKLEE--LEQLEEELEQLREELEELLKK--LGEIEQLIEELESRKAE 727
Query: 196 MEDAEKEKK 204
+E+ +KE +
Sbjct: 728 LEELKKELE 736
Score = 34.7 bits (80), Expect = 0.12
Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 35/227 (15%)
Query: 13 AEAAAASAEDEAKRL--KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRK 70
++ K L +LE+LE K ++ +EE + + + + ER K+L L
Sbjct: 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERL-- 370
Query: 71 KAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYEL 130
EEL+ ++ +ALER + ++E E K+ + ++ +E + LE ++ EL
Sbjct: 371 ---EELE-KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELEREL 426
Query: 131 DR---EIMLKDFEITEL---GKQVNDLRGKFVR-PILKK----------VSKYENKFAKL 173
+ EI + +I +L + +L G + P+ + + YE + +L
Sbjct: 427 EELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEEL 486
Query: 174 QKKAAEFNFRSQLKAVKK----------REFSMEDAEKEKKPEWVKE 210
+++ + ++L+ + E +E E ++E
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533
>gnl|CDD|234706 PRK00269, zipA, cell division protein ZipA; Reviewed.
Length = 293
Score = 36.7 bits (85), Expect = 0.020
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEG-APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
A A+ R G+ P +G E PA ++ D ++ P
Sbjct: 81 ARPRERRRDTKTAKQQKRGRGSEPQQGDLNLDLDEVEPALFSDRDDDFTPDKRKSKGREP 140
Query: 493 AEAPPAESAPA 503
PP E P
Sbjct: 141 RIEPPKELPPV 151
Score = 33.6 bits (77), Expect = 0.21
Identities = 10/78 (12%), Positives = 13/78 (16%), Gaps = 1/78 (1%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P A P P + + +
Sbjct: 77 PSMSARPRERRRDTKTAKQQKRGRGSEPQQGDLNLDLD-EVEPALFSDRDDDFTPDKRKS 135
Query: 477 APAPPADAPPAEPAPPAE 494
P PP E P E
Sbjct: 136 KGREPRIEPPKELPPVEE 153
Score = 32.8 bits (75), Expect = 0.38
Identities = 8/65 (12%), Positives = 13/65 (20%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P+ A + P E PA +D ++
Sbjct: 77 PSMSARPRERRRDTKTAKQQKRGRGSEPQQGDLNLDLDEVEPALFSDRDDDFTPDKRKSK 136
Query: 497 PAESA 501
E
Sbjct: 137 GREPR 141
Score = 30.1 bits (68), Expect = 2.4
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 6/96 (6%)
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
+T E + P+ A P E A+ G+ P +G E A
Sbjct: 64 DTHKEPQLDEHDLPSMSARPRE---RRRDTKTAKQQKRGRGSEPQQGDLN-LDLDEVEPA 119
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
++ PP E P E
Sbjct: 120 LFSD--RDDDFTPDKRKSKGREPRIEPPKELPPVEE 153
Score = 29.4 bits (66), Expect = 4.6
Identities = 12/75 (16%), Positives = 18/75 (24%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
P+ A P E + A + +E E PA ++
Sbjct: 77 PSMSARPRERRRDTKTAKQQKRGRGSEPQQGDLNLDLDEVEPALFSDRDDDFTPDKRKSK 136
Query: 422 PPPAEGAPAAEGAPA 436
P E P
Sbjct: 137 GREPRIEPPKELPPV 151
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 35.0 bits (81), Expect = 0.020
Identities = 19/74 (25%), Positives = 23/74 (31%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
+ + PPP P P + P AP P E PP+ AP
Sbjct: 33 ESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAP 92
Query: 463 APPAEGAPAPPAEG 476
PA P PP
Sbjct: 93 PAPARKPPLPPPRP 106
Score = 31.2 bits (71), Expect = 0.39
Identities = 24/75 (32%), Positives = 28/75 (37%)
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
P E A P + P + PP PP A P AP + P P PP+
Sbjct: 31 PPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPL 90
Query: 416 APPAEAPPPAEGAPA 430
APPA A P P
Sbjct: 91 APPAPARKPPLPPPR 105
Score = 30.8 bits (70), Expect = 0.53
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA---PAPPAEGAPRAEGAPPAEGAPAPPA 466
P E A P + PP + P P P P P AP + PP G PP+
Sbjct: 29 FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPS 88
Query: 467 EGAPAPPAEGAPAPP 481
AP PA P PP
Sbjct: 89 PLAPPAPARKPPLPP 103
Score = 29.3 bits (66), Expect = 1.6
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
P E A P + P + PP PP A P+ PA PP E P A PP+
Sbjct: 31 PPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPL 90
Query: 428 APAAEGAPAPAEGAPAPPAEGAPR 451
AP PAPA P PP R
Sbjct: 91 AP-----PAPARKPPLPPPRPQRR 109
Score = 27.3 bits (61), Expect = 7.4
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP-PA 487
+A P G P PP P P P AP P E PA P P
Sbjct: 33 ESAHPDDPPPVGDPRPPVVDTPPP--VSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPL 90
Query: 488 EPAPPAEAPPA 498
P PA PP
Sbjct: 91 APPAPARKPPL 101
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 37.1 bits (87), Expect = 0.021
Identities = 18/126 (14%), Positives = 33/126 (26%)
Query: 160 LKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIP 219
L K +K + K +S V++ E E+A++E + E E E
Sbjct: 9 LAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEA 68
Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV 279
E + E +A A + + P +
Sbjct: 69 EEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKP 128
Query: 280 TPNPEE 285
+
Sbjct: 129 KKKKPK 134
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 37.3 bits (86), Expect = 0.022
Identities = 51/290 (17%), Positives = 75/290 (25%), Gaps = 9/290 (3%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
+ D + P P P P V P P
Sbjct: 367 AVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGT 426
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPL-----LKSVVKDTLRRQA 333
+ + T P+S+ ++V + LK + +TL+
Sbjct: 427 SYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGGELKEELIETLKLVK 486
Query: 334 SHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
+E + K + A A E A+ A PA
Sbjct: 487 KLKEEQESLAKELEATAHKSEIKKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRARP 546
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
E E P + +P + AA G + A A E
Sbjct: 547 ETKTELEAVVRFPYQ--IRNMESPAFVHSFTSTTLAAAAGQGSDTAEALAGAIETLLTQA 604
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A PA + PA P + A PP AP P P AP E++
Sbjct: 605 SAQPAG--LSLPAPAVPVNASTPASTPPPLAPQEPPQPGTSAPSLETSLP 652
Score = 31.5 bits (71), Expect = 1.2
Identities = 22/101 (21%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP-APPAEGAPRA-EGA 455
+ A A A P PA P +G P + PA A
Sbjct: 347 ILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPV 406
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P G P + P P P P +P P P
Sbjct: 407 PQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMP 447
Score = 31.5 bits (71), Expect = 1.3
Identities = 21/107 (19%), Positives = 26/107 (24%), Gaps = 4/107 (3%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE----APPPAEGAPAAEG 433
AP A A+ A A A + P + PA A PP G
Sbjct: 355 APSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPG 414
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
+P + G PP P G P
Sbjct: 415 LVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQE 461
Score = 30.4 bits (68), Expect = 2.6
Identities = 20/88 (22%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA-- 471
E A P+ AA A AP A R P + PA
Sbjct: 346 EILKTASLTAPSRVLAAAAKVAVIA--APQTHTGPADRQRPQRPDGIPYSVPARSPMTAY 403
Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPPAE 499
PP P P P P + E
Sbjct: 404 PPVPQFCGDPGLVSPYNPQSPGTSYGPE 431
Score = 30.0 bits (67), Expect = 4.0
Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 1/92 (1%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
+ A A A A A GP + + P + A + A P
Sbjct: 352 SLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCG 411
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
P +P P P P P
Sbjct: 412 DPGLVSP-YNPQSPGTSYGPEPVGPVPPQPTN 442
Score = 29.2 bits (65), Expect = 6.7
Identities = 53/286 (18%), Positives = 71/286 (24%), Gaps = 25/286 (8%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP-PPEPE--PEPP 267
P S R P+ P P+ D V PV VPP P P P
Sbjct: 391 PYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISM 450
Query: 268 VEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKD 327
+ P P +L E+L+ T + + K +
Sbjct: 451 ANMVYPGHPQEH--------------GHERKRKRGGELKEELIE----TLKLVKKLKEEQ 492
Query: 328 TLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
+ E K E+ A A E A+ A PA E
Sbjct: 493 ESLAKELEATAHKSEIKKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRARPETKTEL 552
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
E +P + A A A A PA
Sbjct: 553 EAVVRFPYQI--RNMESPAFVHSFTSTTLAAAAGQGSDTAEALAGAIETLLTQASAQPAG 610
Query: 448 GAPRAEGAP--PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+ A P + A PP PP G AP + + P
Sbjct: 611 LSLPAPAVPVNASTPASTPPPLAPQEPPQPGTSAPSLETSLPQQKP 656
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 36.3 bits (84), Expect = 0.024
Identities = 21/97 (21%), Positives = 26/97 (26%), Gaps = 2/97 (2%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
E P P + A+ + P + AP PP+ G P E
Sbjct: 108 KVLGEEEPAP-QEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPV 166
Query: 463 APPAEGAPAPPAEG-APAPPADAPPAEPAPPAEAPPA 498
A PA PPA PP P
Sbjct: 167 DSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVV 203
Score = 35.2 bits (81), Expect = 0.056
Identities = 14/64 (21%), Positives = 19/64 (29%)
Query: 214 KKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPP 273
+K + EP P+ E+ D + P E P E P E P P
Sbjct: 106 LEKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP 165
Query: 274 TPPS 277
Sbjct: 166 VDSM 169
Score = 31.3 bits (71), Expect = 1.00
Identities = 19/101 (18%), Positives = 21/101 (20%), Gaps = 3/101 (2%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
E E P E A P A E P PA
Sbjct: 107 EKVLGEEEPAPQE--ETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEE 164
Query: 418 PAEAPPPAEGAPAAEG-APAPAEGAPAPPAEGAPRAEGAPP 457
P ++ A A P P PP P
Sbjct: 165 PVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHR 205
Score = 30.2 bits (68), Expect = 2.4
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 233 ASDVEDGKETPLPPEGEQPPVEEVP-------PPPEPEPEPPVEEIPPTPPSPVTPNP 283
D+E E L E P E V P P P+ E + P PPS
Sbjct: 99 EKDLEKLLEKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIK 156
Score = 29.4 bits (66), Expect = 3.5
Identities = 21/89 (23%), Positives = 22/89 (24%), Gaps = 9/89 (10%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP--AP 480
E PA + P E PA P E PA
Sbjct: 110 LGEEE-PAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDS 168
Query: 481 PADAPPAE------PAPPAEAPPAESAPA 503
A A PA PPA PP P
Sbjct: 169 MAIAVPAIDTPVTLELPPAPQPPPPVVPQ 197
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/51 (25%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
E E PAP E P P P D E P E
Sbjct: 105 LLEKVLGEEE-PAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEET 154
Score = 28.2 bits (63), Expect = 9.4
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATD--ASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPE 265
P+ ++ +P P E + VE+ ++ + PP P+P
Sbjct: 132 RPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPP 191
Query: 266 PPVEEIPPTPPSP 278
PPV P T
Sbjct: 192 PPVVPQPSTMVVH 204
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 36.8 bits (85), Expect = 0.026
Identities = 53/268 (19%), Positives = 73/268 (27%), Gaps = 14/268 (5%)
Query: 242 TPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVS 301
+ P P PPP P PV + P P +P L D S P
Sbjct: 151 SAEPSHPVPAPAAASAPPPPPRAARPVRQPAPAPAAPGDTYTVRSGDTLWDIASRLRPQD 210
Query: 302 IDDLVEKLMSAVSATPQPLLK---------SVVKDTLRRQASHEETEGGEPKPEGEAPAD 352
+ + L++ PQ + SV++ Q E + + + + A
Sbjct: 211 HVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRIPSAAQILRESPQEALAEVKAQTAAF 270
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
P++ + A E A A AE A A P
Sbjct: 271 AGEPSKADRVGKPVAKAPAKVAKERALAELPARVAELQAQLNKAQHELAQKAAPLAAAQA 330
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
A AP A P+ AP AE +PA P A G P +
Sbjct: 331 ALDAPAETATAPSAPAPQ-----VSAESSPAQPGSYLLAAPGDAPLGELAQAQSARERLA 385
Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAES 500
A P A ES
Sbjct: 386 EESVPAAEPRSRLAPVAAVEQPFAEVES 413
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 35.2 bits (81), Expect = 0.027
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 442 PAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P P E PA P PP PA P A A PA A P+ P + P A
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140
Score = 33.6 bits (77), Expect = 0.071
Identities = 23/57 (40%), Positives = 25/57 (43%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
PAP E P A+ A PP PA P A A PA A PP+D P AP
Sbjct: 85 PAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 31.3 bits (71), Expect = 0.51
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P P P E P A PA P PA P PA P APP P PP
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAV--PPAPAAAVPAPAAAPPPSDPPQPP 138
Score = 31.0 bits (70), Expect = 0.59
Identities = 18/51 (35%), Positives = 20/51 (39%)
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
P A P PA P PP PA P A PAP A PP++
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
Score = 29.8 bits (67), Expect = 1.6
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P PA P PP + PA P PA A PA +A
Sbjct: 88 PEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129
Score = 29.0 bits (65), Expect = 3.2
Identities = 23/67 (34%), Positives = 25/67 (37%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
E EA AP APP PP +P P + PA PA PA AP P
Sbjct: 72 EQEARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPP 131
Query: 406 PAEGPPP 412
PP
Sbjct: 132 SDPPQPP 138
Score = 28.6 bits (64), Expect = 3.6
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
P P E P PA P PP PA APA P A
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVP----TPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQ 136
Query: 422 PPPA 425
PP A
Sbjct: 137 PPRA 140
Score = 27.9 bits (62), Expect = 6.4
Identities = 22/62 (35%), Positives = 24/62 (38%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
AP APP P +PAP PPP AP A APAA P+ P
Sbjct: 80 APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPR 139
Query: 444 PP 445
P
Sbjct: 140 AP 141
Score = 27.9 bits (62), Expect = 6.6
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P E P A+ P PA PP + P APAA PAPA P PR
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAA-VPAPAAAPPPSDPPQPPR 139
Query: 452 A 452
A
Sbjct: 140 A 140
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 36.6 bits (84), Expect = 0.027
Identities = 31/101 (30%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 410 PPPAEGAPPAEAPPPAEG-APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
P PA + AP PA AA P A+ AP P A AP + AP
Sbjct: 42 PAPAPHQAASRAPDPAVAPTSAASRKPDLAQ-APTPAASEKFDPAPAPHQAASRAPDPAV 100
Query: 469 AP---APPAEGAPAPPADAPPAEPAP---PAEAPPAESAPA 503
AP A P A A A AP A + PA
Sbjct: 101 APQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPA 141
Score = 32.8 bits (74), Expect = 0.50
Identities = 36/107 (33%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A P E A P AP P + AA AP PA AP A P AP
Sbjct: 20 ANLNTNIPIPELHTSAATQKPDPAPAPHQ---AASRAPDPAV-APTSAASRKPDLAQAPT 75
Query: 458 AEGAPAPPAEGAPAPPAEGAPAP-PADAPPAEPAP-PAEAPPAESAP 502
+ + APAP + AP PA AP AP P A SA
Sbjct: 76 PAASEKF--DPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAA 120
Score = 32.4 bits (73), Expect = 0.68
Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE---GPPPAEGAPPAEAPPPAEGA 428
AP A P A P AP P A P PA + AP PA A
Sbjct: 43 APAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAV-A 101
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
P AP P A A +A AP G A + PA + +P P A E
Sbjct: 102 PQLAAAPKPD---AAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRSME 158
Score = 31.6 bits (71), Expect = 1.1
Identities = 31/107 (28%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 338 TEGGEPKPEGEAPADGAP-PAEGAPPAEGAPPAEGAPPAEGA-----PPAEGAPPAEGAP 391
T+ +P P A AP PA A P P A P A AP
Sbjct: 37 TQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAP 96
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
AP AP P A + A A P G AA P PA
Sbjct: 97 DPAVAPQLAAAPKPDAAEAFTS--AAQAHEAPADAGTSAASKKPDPA 141
Score = 31.6 bits (71), Expect = 1.1
Identities = 32/115 (27%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAP-PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
P A AP AP + + P A+ P PA AP P + AA AP P
Sbjct: 42 PAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQ---AASRAPDP 98
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPA--PPAEGAPAPPAEGAPAPPADAPPAEPA 490
A AP AP+ + A A A A P P A + P
Sbjct: 99 A---VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
Score = 31.2 bits (70), Expect = 1.5
Identities = 34/109 (31%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAP-PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P AA AP P A P A+AP PAA PA AP A A
Sbjct: 42 PAPAPHQAASRAPDPAVAPTSAASRKPDLAQAP-----TPAASEKFDPAP-APHQAASRA 95
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P AP AP P A A A A A A + PA
Sbjct: 96 PDPAVAPQLAAAPKPDAA---EAFTSAAQAHEAPADAGTSAASKKPDPA 141
Score = 30.9 bits (69), Expect = 1.7
Identities = 28/129 (21%), Positives = 40/129 (31%), Gaps = 29/129 (22%)
Query: 212 ESKKKRIPIPE---------PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPP--- 259
+ IPIPE P+P P AS D P +P + + P P
Sbjct: 20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS 79
Query: 260 --PEPEPEP-------PVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLM 310
+P P P P + P + P+ E S + + +
Sbjct: 80 EKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAE--------AFTSAAQAHEAPADAGT 131
Query: 311 SAVSATPQP 319
SA S P P
Sbjct: 132 SAASKKPDP 140
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 36.6 bits (85), Expect = 0.028
Identities = 16/54 (29%), Positives = 18/54 (33%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
AA+ A A PA + PA A A P P P PPA
Sbjct: 264 TWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPA 317
Score = 34.7 bits (80), Expect = 0.11
Identities = 17/60 (28%), Positives = 20/60 (33%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A A A AP + ++ A A A PPP A P E P AA
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
Score = 34.3 bits (79), Expect = 0.16
Identities = 16/62 (25%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
A A PA A PA + A A PP PA P E P
Sbjct: 267 DAAAQPAT-------AAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319
Query: 500 SA 501
Sbjct: 320 GR 321
Score = 33.9 bits (78), Expect = 0.23
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEG-----APAPPADAPPAEPAPPAEAPPAESAPA 503
A A+ A A PA + PA A AP P PPA P +
Sbjct: 261 AFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320
Score = 32.4 bits (74), Expect = 0.57
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 434 APAPAEGAPAPPAEG-APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A A A+ A A PA + PA A PP A P A
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320
Score = 31.2 bits (71), Expect = 1.3
Identities = 16/60 (26%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
PA AP + + PA A APAPP A P E A
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPP-----NPPATPPEPPARRGRGSAA 325
Score = 30.5 bits (69), Expect = 2.6
Identities = 15/55 (27%), Positives = 17/55 (30%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
A PA APA ++ A A AP P PA P G
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321
Score = 30.1 bits (68), Expect = 3.3
Identities = 13/56 (23%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A A APA + + P A A P PA P E
Sbjct: 267 DAAAQPATAAPAPSRMTDTND-SKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321
Score = 30.1 bits (68), Expect = 3.5
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
A PA AP + + PA A P P P A PP A G+
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPP---ATPPEPPARRGRGS 323
Query: 435 PA 436
A
Sbjct: 324 AA 325
Score = 30.1 bits (68), Expect = 3.8
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A PA AP A + + ++ A A P PA P E A
Sbjct: 267 DAAAQPATAAP-APSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 36.5 bits (85), Expect = 0.028
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR 78
A+ + EE + K+ E ++ E K ++PE ++K L K+ ++ ++
Sbjct: 275 AAEEERQEEAQEKKEEKKKEERE-----AKLAKLSPEEQRK---LEEKERKKQARK 322
Score = 31.1 bits (71), Expect = 1.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 26 RLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR--EQERR 83
R + EE K AE R+ EEA + +K +K++ L K + EE ++ E+ER+
Sbjct: 265 REEEEEKILKAAEEERQ-EEAQEKKEEK------KKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 84 ALERK 88
RK
Sbjct: 318 KQARK 322
Score = 30.7 bits (70), Expect = 1.9
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 22 DEAKRLKLEELERKRAEVRRRMEEASGARRKKGF---MTPERKKKLRLLLRKKAAEELKR 78
D+ LKL ++ + R EE + + E+K++ + R+ +L
Sbjct: 246 DKLANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSP 305
Query: 79 EQERRALERKR 89
E++R+ E++R
Sbjct: 306 EEQRKLEEKER 316
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 36.4 bits (85), Expect = 0.029
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
E A+A P AE A A E APP P E A P PA
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKE-AQPVNVQPAQF 284
Query: 466 AEGAPAPPAEGAP 478
P P A P
Sbjct: 285 QSFDPPPLATTEP 297
Score = 36.0 bits (84), Expect = 0.039
Identities = 13/76 (17%), Positives = 14/76 (18%), Gaps = 4/76 (5%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
E E A A + P A P P
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPP----QRQEPEKEAQPVNVQP 281
Query: 471 APPAEGAPAPPADAPP 486
A P P A P
Sbjct: 282 AQFQSFDPPPLATTEP 297
Score = 35.6 bits (83), Expect = 0.057
Identities = 17/75 (22%), Positives = 19/75 (25%), Gaps = 3/75 (4%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
E E A A A P A A + P A P PA
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQ 285
Query: 483 DAPPAEPAPPAEAPP 497
+P P A P
Sbjct: 286 ---SFDPPPLATTEP 297
Score = 34.5 bits (80), Expect = 0.11
Identities = 17/51 (33%), Positives = 18/51 (35%)
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
E E +P AE A A A APP P EA P PA
Sbjct: 232 EEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPA 282
Score = 34.5 bits (80), Expect = 0.11
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
G E E A A PA A+ A + P A P + P
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQ---AAPAPKQEQQQAPPQRQEPEKEAQPVNVQP 281
Query: 487 AEPAPPAEAPPAESAP 502
A+ P A + P
Sbjct: 282 AQFQSFDPPPLATTEP 297
Score = 32.1 bits (74), Expect = 0.59
Identities = 16/73 (21%), Positives = 18/73 (24%), Gaps = 1/73 (1%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
E E A AP + PP P EA P PA
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPV-NVQPAQF 284
Query: 433 GAPAPAEGAPAPP 445
+ P A P
Sbjct: 285 QSFDPPPLATTEP 297
Score = 31.8 bits (73), Expect = 0.97
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
E + E + P A PA + P + P + A P PA
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQE--PEKEAQPVNVQPAQ 283
Query: 400 EGA--PAPPAEGPP 411
+ P P A P
Sbjct: 284 FQSFDPPPLATTEP 297
Score = 31.0 bits (71), Expect = 1.7
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 245 PPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
E E+ VEE P EP + P P P
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAP 264
Score = 29.8 bits (68), Expect = 3.1
Identities = 9/56 (16%), Positives = 11/56 (19%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
E PA A+A P + A P P
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQP 281
Score = 29.8 bits (68), Expect = 3.2
Identities = 15/64 (23%), Positives = 19/64 (29%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
E E E AS + P +Q + P EPE E + P P
Sbjct: 230 EEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDP 289
Query: 282 NPEE 285
P
Sbjct: 290 PPLA 293
Score = 28.3 bits (64), Expect = 9.3
Identities = 14/72 (19%), Positives = 23/72 (31%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
+ E E + A + + + + P +E +P P + PP
Sbjct: 233 EVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDPPPL 292
Query: 279 VTPNPEELWLYL 290
T P L L L
Sbjct: 293 ATTEPRNLDLIL 304
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 36.7 bits (85), Expect = 0.029
Identities = 31/169 (18%), Positives = 42/169 (24%), Gaps = 3/169 (1%)
Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
+R S E + +P A + + A+ P P P
Sbjct: 100 IRVHLSRAEPDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNG 159
Query: 389 GAPPAEGAPAAE--GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
+ A +E A PA G P A PA P + P A
Sbjct: 160 FSADPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLD-VPPIAA 218
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
EG + PA AP G D + E
Sbjct: 219 SPPGPQEGPTISASQPAQRDHAVLAPFLRGLGVSLPDLDSDDAEAFLEE 267
Score = 35.5 bits (82), Expect = 0.061
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 3/139 (2%)
Query: 294 VSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRR--QASHEETEGGEPKPEGEAPA 351
+S + P D SAVS+T + R + + +P P G +
Sbjct: 104 LSRAEPDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSA- 162
Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
D + PA GAP A + PA P P A P
Sbjct: 163 DPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPG 222
Query: 412 PAEGAPPAEAPPPAEGAPA 430
P EG + + P
Sbjct: 223 PQEGPTISASQPAQRDHAV 241
Score = 34.8 bits (80), Expect = 0.094
Identities = 32/142 (22%), Positives = 42/142 (29%), Gaps = 13/142 (9%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP-PPAEGAP 429
A P E P A + + A+ P P PP P P A
Sbjct: 106 RAEPDESDPDTGSPQSAVSSTDMDDDFLADIEPEP--RLPPGLTDPLQLADPVPNGFSAD 163
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA---------PAPPAEGAPAP 480
+ + A PA GAP A P + G PP +P
Sbjct: 164 PLSALQSESLIAQPDPAGGAPSISRNSEA-PLSDPASAGGIDTPFPDDLDVPPIAASPPG 222
Query: 481 PADAPPAEPAPPAEAPPAESAP 502
P + P + PA+ A AP
Sbjct: 223 PQEGPTISASQPAQRDHAVLAP 244
Score = 32.5 bits (74), Expect = 0.60
Identities = 27/136 (19%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA-PPAEAPP 423
A P E P A + + A+ P E P P P +
Sbjct: 106 RAEPDESDPDTGSPQSAVSSTDMDDDFLADIEP--EPRLPPGLTDPLQLADPVPNGFSAD 163
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
P A + A+ PA A R AP ++ A A + + P +
Sbjct: 164 PL---SALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASP 220
Query: 484 APPAEPAPPAEAPPAE 499
P E + + PA+
Sbjct: 221 PGPQEGPTISASQPAQ 236
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 36.9 bits (85), Expect = 0.031
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTPP 276
PP PPPP P EPP + PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.9 bits (72), Expect = 1.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
PP G P PP P PP PP++P PP
Sbjct: 5 PP--GNPPPP----PPPPGFEPPSQPPPP 27
Score = 29.9 bits (67), Expect = 3.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPP 424
G P PP PPP PP++ PPP
Sbjct: 7 GNPPPP---PPPPGFEPPSQPPPP 27
Score = 29.2 bits (65), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 243 PLPPEGEQPPVEEVPPPP 260
P PP G +PP + PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 36.2 bits (84), Expect = 0.031
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 9/120 (7%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP----PAEGAPAAEGAPAPPAE 408
G P A P A G P + AP A+ P E AA+
Sbjct: 104 GDPLVSRQASESRA--DTSLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPL 161
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG---APPAEGAPAPP 465
PP P AP AE P PA PA AP ++ P G P
Sbjct: 162 FPPLDARLPAFAAPIDAEPTMVPPFVPLPAPEPAPAPASQAPSSDAVALTPFLRGLGLPL 221
Score = 33.5 bits (77), Expect = 0.25
Identities = 31/137 (22%), Positives = 34/137 (24%), Gaps = 5/137 (3%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
G P A P A G P + AP A+ P P
Sbjct: 104 GDPLVSRQASESRA--DTSLPTAGGPPTPDPAPLAQLDPLKALDQEPL---SAADLDDLS 158
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A PP + A AP AE PP P E AP A P G
Sbjct: 159 APLFPPLDARLPAFAAPIDAEPTMVPPFVPLPAPEPAPAPASQAPSSDAVALTPFLRGLG 218
Query: 479 APPADAPPAEPAPPAEA 495
P E
Sbjct: 219 LPLELLDSQAAEDVLEE 235
Score = 33.1 bits (76), Expect = 0.37
Identities = 25/107 (23%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 403 PAPPAEGPPP----AEGAPPAEAPPPAEGAPAAEGAPAPA---EGAPAPPAEGAPRAEGA 455
P P A PP + AP A+ P A E A +
Sbjct: 104 GDPLVSRQASESRADTSLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPLFP 163
Query: 456 PPAEGAPAPPAEGAPAPPAEGA-PAPPADAPPAEPAPPAEAPPAESA 501
P PA A AE P P EPAP + S
Sbjct: 164 PLDARLPAF----AAPIDAEPTMVPPFVPLPAPEPAPAPASQAPSSD 206
Score = 30.4 bits (69), Expect = 2.4
Identities = 23/97 (23%), Positives = 24/97 (24%), Gaps = 11/97 (11%)
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEG-APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP- 472
G P A P P P A E A + AP
Sbjct: 104 GDPLVSRQASES--RADTSLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPL 161
Query: 473 ---PAEGAPAPPADAPPAEP---APPAEAPPAESAPA 503
PA A AEP P P E APA
Sbjct: 162 FPPLDARLPAF-AAPIDAEPTMVPPFVPLPAPEPAPA 197
Score = 28.9 bits (65), Expect = 6.4
Identities = 19/94 (20%), Positives = 25/94 (26%), Gaps = 4/94 (4%)
Query: 410 PPPAEGAPPAEAPPPA-EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
P P AP + A + P A A P + PA AP
Sbjct: 122 PTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPLFPPLDARLPAFAAPIDAEPT 181
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P P P + PA + + P
Sbjct: 182 MVPPFV---PLPAPEPAPAPASQAPSSDAVALTP 212
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 36.4 bits (84), Expect = 0.031
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 444 PPAEGAPRAEGAPPA---EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P G PR+ G P + P P+ + G P P P+ PP
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGS 63
Score = 36.4 bits (84), Expect = 0.037
Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 18/118 (15%)
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
E P G P + G P + P + G+ P P + P+ PP
Sbjct: 5 EMQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSN 64
Query: 424 PAEGAPAAE-GAPAPA----------EGAPAPPAEGAPRAEGA-----PPAEGAPAPP 465
G P+ G P PP +PR +G+ P + PP
Sbjct: 65 GDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPY--SPRDQGSEHVYEEPRDARMVPP 120
Score = 34.8 bits (80), Expect = 0.11
Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P+ G D P + G+ PP A P PP G+
Sbjct: 12 GGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRP----PPYGGSNGDR 67
Query: 401 GAPAPPAEGPPPA----------EGAPPAEAPPPAEGA 428
P P+ G PP P +G+
Sbjct: 68 HGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSPRDQGS 105
Score = 30.2 bits (68), Expect = 2.9
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 447 EGAPRAEGAPPAEGAPAPPAEGA-PAPPAEGAPAPPADAPPAEPAPPA--EAPPAESAP 502
E P G P + G P + P P+ + PP A PP
Sbjct: 5 EMQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGS 63
Score = 29.4 bits (66), Expect = 4.9
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPP 273
P+ P D + D P PP P + + P PP
Sbjct: 8 PLGAGGPRSHGGPDGDE-GDSNPYY-PSSFGSSWDRPGPPVP-EDYDAPSHRPPP 59
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 36.0 bits (83), Expect = 0.034
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
G AP P P +P + + AP + P+E + A P+
Sbjct: 79 TGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS-T 137
Query: 490 APPAEAPPAESA 501
+ P+ A S
Sbjct: 138 SVPSSGSDAAST 149
Score = 30.6 bits (69), Expect = 1.9
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
PA AP P PA PA G A PA + A P
Sbjct: 83 KVAPPAATPTSAPT-----PTPSPPASPASGMSAAPA--SAVEEKSPSEESATATAPESP 135
Query: 498 AESAPA 503
+ S P+
Sbjct: 136 STSVPS 141
Score = 29.9 bits (67), Expect = 3.8
Identities = 19/75 (25%), Positives = 24/75 (32%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
P A A AP +PPA A APA+ P+E A
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 419 AEAPPPAEGAPAAEG 433
P+ G+ AA
Sbjct: 135 PSTSVPSSGSDAAST 149
Score = 29.5 bits (66), Expect = 5.1
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P+ A A P + P P +PA A PA ++P ESA A
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEE-KSPSEESATA 129
Score = 28.7 bits (64), Expect = 8.5
Identities = 9/69 (13%), Positives = 16/69 (23%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
KP+ P A P +P + + A + A +P
Sbjct: 76 KPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESP 135
Query: 404 APPAEGPPP 412
+
Sbjct: 136 STSVPSSGS 144
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 36.3 bits (84), Expect = 0.035
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
E A A A AP APAA APA PAP A G R E
Sbjct: 46 EDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPA-AVPAPGAIGDLRGE 98
Score = 33.2 bits (76), Expect = 0.33
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
GA A A PAP PA APA + A PA P
Sbjct: 49 GAVAAS--AQAYAPPAPAP--LPAALVAPAPAAASIAAPAAVPAPGAIGDLRGE 98
Score = 33.2 bits (76), Expect = 0.34
Identities = 14/45 (31%), Positives = 14/45 (31%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A AP PA A A AP A A PA A
Sbjct: 47 DLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGA 91
Score = 32.9 bits (75), Expect = 0.45
Identities = 18/50 (36%), Positives = 18/50 (36%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
GA A A AP A APAA AP A P A G E
Sbjct: 49 GAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDLRGE 98
Score = 32.1 bits (73), Expect = 0.86
Identities = 16/45 (35%), Positives = 16/45 (35%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
GA A A AP A AP A A PAP A G
Sbjct: 49 GAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIG 93
Score = 31.3 bits (71), Expect = 1.3
Identities = 12/50 (24%), Positives = 12/50 (24%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
GA A A AP A AP A P G
Sbjct: 49 GAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDLRGE 98
Score = 30.5 bits (69), Expect = 2.1
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
A A A A PAP P A AP A PAP A G
Sbjct: 48 LGAVAASAQAYAPPAPAP--LPAALVAPAPAAASIAAPAAVPAPGAIG 93
Score = 30.5 bits (69), Expect = 2.4
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
GA A A AP PAA APAP A P A G +
Sbjct: 49 GAVAASAQAYAPPAPAP--LPAALVAPAPAAASIAAPAAVPAPGAIGDLRGELQS 101
Score = 30.5 bits (69), Expect = 2.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
E A A A AP P P A APAP A AP A P
Sbjct: 46 EDLGAVAASAQAYAPPAPA----PLPAALVAPAPAAASIAAPAAVPAPG 90
Score = 29.8 bits (67), Expect = 3.9
Identities = 11/53 (20%), Positives = 12/53 (22%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
G A A AP A AP A P G +
Sbjct: 49 GAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDLRGELQS 101
Score = 29.8 bits (67), Expect = 4.2
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
GA A A A APA A APAP A P E
Sbjct: 49 GAVAASAQAYAPPAPAP---LPAALVAPAPAAASIAAPAAVPAPGAIGDLRGE 98
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 36.6 bits (85), Expect = 0.037
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 5 TPAAAETPAEAAAASAEDEAKRLKLEELE------RKRAEVRRRMEEASGARRKKGFMTP 58
TP A+ A AE A + ++ELE R E+ R E + R
Sbjct: 165 TPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRS------- 217
Query: 59 ERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGE-PKDTDD 103
++ LR + + +RE E RALE ++ E+ G+ PK
Sbjct: 218 QQLDAYLQALRNQLNSQRQREAE-RALESTELLAEQSGDLPKSIVA 262
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 36.1 bits (83), Expect = 0.042
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
E P A+ AP+P + G+ + P + P A A
Sbjct: 264 QEAKVTTVVTPPQADAAPSP---------LSVRPAGSSGSASGSTQIPTSGSVLGPGAAA 314
Query: 485 PPAEPAPPAE 494
+ +
Sbjct: 315 TELQQVVQLQ 324
Score = 34.1 bits (78), Expect = 0.18
Identities = 9/58 (15%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA-PAPPAEGAPRAEGAPPAEGAPA 463
E PP P+ + G+ A G+ P + A
Sbjct: 264 QEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAAATELQQVV 321
Score = 33.8 bits (77), Expect = 0.26
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 369 AEGAPPAEGAPP-AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
E PP A+ AP PA + +A G+ P G GA E +
Sbjct: 264 QEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAAATELQQVVQL 323
Query: 428 APAAE 432
E
Sbjct: 324 QNYDE 328
Score = 31.1 bits (70), Expect = 1.5
Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
E P P P PA + G+ + + P A
Sbjct: 264 QEAKVTTVVTPPQADAAPSP-LSVRPAGSS----GSASGSTQIPTSGSVLGPGA 312
Score = 30.7 bits (69), Expect = 2.0
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPA---EGAPPAEGAPPAEGAPAAEGAPAP 405
+ PP A P+ + G+ + P G+ GA A E
Sbjct: 262 TTQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAAATELQQVV 321
Query: 406 PAEGPPPAEGA 416
+ + +
Sbjct: 322 QLQNYDEEDDS 332
Score = 29.1 bits (65), Expect = 6.2
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE---APPAESAPA 503
P A P A+ AP+P + P + P + S
Sbjct: 259 PKGTTQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLG 309
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 36.0 bits (83), Expect = 0.045
Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 328 TLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP--PAEGAPPAEGAPPAEGAP 385
R+ E GG A P + P + P+ + P P P
Sbjct: 164 RGLREMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNP 223
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
G PA+ + PAPP PP + P PPP P
Sbjct: 224 FLPGPSPAQPSAPPASIPAPPI--PPVIQYVAPPPVPPPQPIIP 265
Score = 34.5 bits (79), Expect = 0.12
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
GA P G P + AP+ A + P PR P P P
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPS--ASSTPGNRLPRVSFNPFL---PGPSPAQP 233
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
APPA PAPP PP P
Sbjct: 234 SAPPAS-IPAPPI--PPVIQYVAPPPVPPPQP 262
Score = 31.8 bits (72), Expect = 0.94
Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
G P PP PP + P + AP+ + R P P
Sbjct: 180 GNIPGAIQPP---PPSSLPGL----PPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQ 232
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
APPA PAPP APP PP P
Sbjct: 233 PSAPPAS-IPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 29.5 bits (66), Expect = 5.6
Identities = 18/82 (21%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA---AEGAPAPAEGAPAPPAEGAPRAE 453
GA PP P + P A P + P P+P AP A
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPAS 239
Query: 454 GAPPAEGAPAPPAEGAPAPPAE 475
P P PP +
Sbjct: 240 IPAPPIPPVIQYVAPPPVPPPQ 261
Score = 28.7 bits (64), Expect = 7.8
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 243 PLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
P P +P PP P V P PP P+ P
Sbjct: 227 GPSPAQPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 28.3 bits (63), Expect = 9.9
Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE-GAP 417
G P PP P + P + A A G + P GP PA+ AP
Sbjct: 180 GNIPGAIQPPP---PSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236
Query: 418 PAEAPPPAEGAPAAEGAPAPA 438
PA P P AP P
Sbjct: 237 PASIPAPPIPPVIQYVAPPPV 257
>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 35.5 bits (82), Expect = 0.047
Identities = 18/99 (18%), Positives = 21/99 (21%), Gaps = 1/99 (1%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
A GA P G + A E A P P + P
Sbjct: 13 AKADAATVPEQDVMPGAEPVSGQANEQKRIA-EEAHPQPVARPSSTDDPVTPTEGKPVRP 71
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
A A G P + A P P
Sbjct: 72 KGLPILALAGPVGELGQPMDLPAPANPGDPLALPEPPSP 110
Score = 34.8 bits (80), Expect = 0.079
Identities = 27/111 (24%), Positives = 31/111 (27%), Gaps = 10/111 (9%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEG-----APPAEGA---PPAEGAPPAEGAPPAEGA 396
+A A GA P G AE A P A + + P EG
Sbjct: 8 RPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPVTPTEGK 67
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P A P E P + P PA P A P P E
Sbjct: 68 PVRPKGLPILALAGPVGELGQPMDLPAPAN--PGDPLALPEPPSPPTKPEE 116
Score = 30.5 bits (69), Expect = 1.8
Identities = 33/116 (28%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 391 PPAEGAPAAEGAPAPPAE---GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P A A+ A P + G P G + E P P+ + P P E
Sbjct: 7 PRPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTD-DPVTPTE 65
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G P A A P P APA P D P A P PP+ E PA
Sbjct: 66 GKPVR-PKGLPILALAGPVGELGQPMDLPAPANPGD-PLALPEPPSPPTKPEEMPA 119
Score = 30.1 bits (68), Expect = 2.6
Identities = 25/122 (20%), Positives = 32/122 (26%), Gaps = 5/122 (4%)
Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPE-----GEAPADGAPPAEGAPPAEGAPPAEGA 372
+L+ + A+ + P E A A P A + +
Sbjct: 2 IHVLEPRPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPV 61
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
P EG P P G PA P P P E PAAE
Sbjct: 62 TPTEGKPVRPKGLPILALAGPVGELGQPMDLPAPANPGDPLALPEPPSPPTKPEEMPAAE 121
Query: 433 GA 434
A
Sbjct: 122 VA 123
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 35.8 bits (83), Expect = 0.049
Identities = 27/161 (16%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 24 AKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERR 83
++ +E ER E ++ EE A + R++ + ++ EEL+RE E R
Sbjct: 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE-EER 85
Query: 84 ALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITE 143
++++ +D R + + ++ E+ + + E EL++++ + + +
Sbjct: 86 LVQKEEQLDARAEKLDNLENQLEER--------EKALSARELELEELEKQLDNELYRVAG 137
Query: 144 LGKQV------NDLRGKFVRPILKKVSKYENKFAKLQKKAA 178
L + L + ++V K E + ++ A
Sbjct: 138 LTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKA 178
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 36.2 bits (83), Expect = 0.050
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 254 EEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
+EV PP P+P+P + P P P TP+PE
Sbjct: 916 QEVTPPSPPDPDPTPDPDPTPDPDP-TPDPE 945
Score = 33.1 bits (75), Expect = 0.42
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 230 ATDASDVEDGKETPLPPEGEQPPVEEVP-PPPEPEPEPPVEEIPPTPPSP 278
A D + VED + L + PP P P P+P+P P + P P+P
Sbjct: 899 AYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTP 948
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 36.0 bits (83), Expect = 0.051
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
A P AP A PA +PAA A A+ P +A
Sbjct: 192 AGSTPATAPAP--ASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAG 237
Score = 35.2 bits (81), Expect = 0.071
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A PA A A PA +PA P A PA PA
Sbjct: 192 AGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPA 232
Score = 33.7 bits (77), Expect = 0.21
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 452 AEGAPPAEGAP--APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A P AP A PA +PA A PA A A+ P +A
Sbjct: 192 AGSTPATAPAPASAQPAAQSPAATQPEPAAAPA-AAKAQAPAPQQAG 237
Score = 33.7 bits (77), Expect = 0.24
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
G+ PA AP PA PAA+ A A P A +A+ P + PA+ A P
Sbjct: 192 AGSTPATAPAPASAQPAAQSPAATQPEPAAAP--AAAKAQAPAPQQAGTQNPAKVDHAAP 249
Query: 474 A 474
A
Sbjct: 250 A 250
Score = 32.5 bits (74), Expect = 0.51
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
G PA PA A P A+ +PAA A APA AP + A A A
Sbjct: 192 AGSTPATAPAPASAQPAAQ-SPAATQPEPAA--APAAAKAQAPAPQQAGTQNPAKVDHA 247
Score = 32.5 bits (74), Expect = 0.52
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A + PA P PA P A++P + PAA A A A+ PAP G A
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQA-PAPQQAGTQNPAKVDHA 247
Score = 32.2 bits (73), Expect = 0.72
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA---EGAPAPAEGAPA 443
A P APA A PA P A PA AP A+ A G PA+ A
Sbjct: 192 AGSTPATAPAPA----SAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHA 247
Query: 444 PPA 446
PA
Sbjct: 248 APA 250
Score = 30.2 bits (68), Expect = 3.0
Identities = 46/186 (24%), Positives = 63/186 (33%), Gaps = 16/186 (8%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIP-PTPPSPVTPNPE 284
E + A + P P G P + P V+E+ P
Sbjct: 74 EVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIEKVTVI 133
Query: 285 ELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSV---VKDTLRRQASHEETEGG 341
E+ + + DTVSA + I +K V A ++KSV V D++
Sbjct: 134 EVLVKVGDTVSADQSL-ITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV- 191
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
G PA PA A PA +P A PA A PA A A+ P + A
Sbjct: 192 ----AGSTPATAPAPAS-AQPAAQSPAATQPEPA--AAPA--AAKAQAPAP-QQAGTQNP 241
Query: 402 APAPPA 407
A A
Sbjct: 242 AKVDHA 247
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 35.6 bits (82), Expect = 0.057
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG----APPAEGAPAPPAEGA--PAPPAEGA 477
P P+ + A E + P AP+ +G PP A P A +
Sbjct: 286 PQRSQPSLQDGQASLEESWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAEWVVESPVSS 345
Query: 478 PAPPADAPPAEPAPPAEAPPA 498
PA P ++ P+ P + PA
Sbjct: 346 PASPLESSPSLPGSLTDLSPA 366
Score = 31.8 bits (72), Expect = 0.83
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 248 GEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNP 299
PP+ PE E VE P + P+ + L L D AS P
Sbjct: 319 LHDPPLSPPLAAPESTAEWVVES-PVSSPASPLESSPSLPGSLTDLSPASLP 369
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 36.0 bits (83), Expect = 0.057
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
E EA PPA A APAPA APAP A AP A G P +
Sbjct: 7 AKEEPAKEEATPPAP----AASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKA 55
Score = 35.2 bits (81), Expect = 0.083
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
E P E PPA A + A A APA A A PA PR + P
Sbjct: 7 AKEEPAKEEATPPAPAA-----SAPAPAAAAPAPVAAAAPAAAGPRPDDEPF 53
Score = 35.2 bits (81), Expect = 0.10
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A A+ PA E P PA AP A PA A A PA P P E P +DA
Sbjct: 4 ATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDE--PFKASDA 58
Score = 34.1 bits (78), Expect = 0.19
Identities = 17/46 (36%), Positives = 18/46 (39%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
A + P E P A A AP A AP A APA A P
Sbjct: 4 ATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPD 49
Score = 33.3 bits (76), Expect = 0.36
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAP-PAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
+ P E A PPA A AP PA APAP A APA P EP ++A
Sbjct: 6 DAKEEPAKEEAT-----PPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKASDA 58
Score = 30.2 bits (68), Expect = 2.9
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
P E A P A + PA A AP AP A A P P E A A
Sbjct: 10 EPAKEEATPPAPAASAPAPAAAAP----APVAAAAPAAAGPRPDDEPFKASDA 58
Score = 30.2 bits (68), Expect = 3.6
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
P E A P A A A AP A APAA P P E ++
Sbjct: 10 EPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAA-AGPRPDDEPFKASD 57
Score = 29.8 bits (67), Expect = 4.5
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPA-EPAPPAEAPPAESAP 502
+ P E A P APA A AP A PAP A A PA + P
Sbjct: 6 DAKEEPAKEEATPP----APAASAPAPAAAAPAPVAAAAPAAAGP 46
Score = 29.1 bits (65), Expect = 6.3
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP-PAEAPPAES 500
E E P PA APAP A APAP A A PA P P + P S
Sbjct: 8 KEEPAKEEATPPAPAASAPAP-AAAAPAPVAAAAPAAAGPRPDDEPFKAS 56
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 35.7 bits (82), Expect = 0.060
Identities = 30/130 (23%), Positives = 37/130 (28%), Gaps = 14/130 (10%)
Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG------------AP 435
P + PAAE PA AE A A + + A A
Sbjct: 920 NEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVR 979
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPA--PPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
+ A A A + PA+ A A A+ A A AP A A
Sbjct: 980 RSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKA 1039
Query: 494 EAPPAESAPA 503
PA A
Sbjct: 1040 AKKPARKAAG 1049
Score = 32.7 bits (74), Expect = 0.62
Identities = 31/144 (21%), Positives = 41/144 (28%), Gaps = 13/144 (9%)
Query: 327 DTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE----------GAPPAEGAPPAE 376
++ RR + E KP + PA A PA+ E A A
Sbjct: 909 NSARRDTMEIQNEQ---KPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVAS 965
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
G A + A A A PA+ A +A A A
Sbjct: 966 GIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKA 1025
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEG 460
PA+ PA + A A G
Sbjct: 1026 PAKKVARKPAAKKAAKKPARKAAG 1049
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 35.6 bits (82), Expect = 0.063
Identities = 31/178 (17%), Positives = 72/178 (40%), Gaps = 29/178 (16%)
Query: 30 EELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRA--LER 87
+ ++++ E+ ++++ S K L R +A E E R L
Sbjct: 405 DAIKKELNEINVKLQDISS-------------KVSSLNQRIRALRENLDELSRNMEMLNG 451
Query: 88 KRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ 147
+ V CG + E++ + Y ++ LE E++ E+ D +I +L K+
Sbjct: 452 QSVC-PVCGT-----TLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKR 505
Query: 148 VNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF-NFRSQLKAVKKREFSMEDAEKEKK 204
L + +++K N++ K++ A+ + + ++ +K + E+ + K
Sbjct: 506 KEYLESE-------EINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYK 556
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 35.5 bits (81), Expect = 0.067
Identities = 23/120 (19%), Positives = 32/120 (26%), Gaps = 3/120 (2%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
G P P+ + + A PA P A +A P
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 436 A--PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
+ G A PA + P + + G A G P A PA P +
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANG-PTTSLPAAPASNIPVS 414
Score = 35.1 bits (80), Expect = 0.076
Identities = 20/120 (16%), Positives = 28/120 (23%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
G P P+ + P+ A + A A A P
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ P A P P+ + + P PA PA P P
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415
Score = 34.3 bits (78), Expect = 0.15
Identities = 25/121 (20%), Positives = 36/121 (29%), Gaps = 2/121 (1%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
G P P+ + P+ A P+ P+ + A A A
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQS-ATTTQASAVALSSAGVL 354
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P++ P A PA P + P + G A G + A PA P
Sbjct: 355 PSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVS 414
Query: 465 P 465
P
Sbjct: 415 P 415
Score = 33.5 bits (76), Expect = 0.26
Identities = 21/113 (18%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Query: 390 APPAEGAPAAEGAPAPPAEG-PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
A A A P + P PA +A + G
Sbjct: 303 AVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG 362
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP-PAEPAPPAEAPPAES 500
A P P P + + G A+ P + PA PA P
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415
Score = 33.5 bits (76), Expect = 0.28
Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 1/126 (0%)
Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
G P P+ + P+ A P+ P+ + A A + G
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQS-ATTTQASAVALSSAGVL 354
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P++ P PA + P P AP + +
Sbjct: 355 PSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVS 414
Query: 472 PPAEGA 477
P + A
Sbjct: 415 PTSRDA 420
Score = 30.8 bits (69), Expect = 1.9
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
G P A P+ + + P+P + + A A A P
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 474 AE----GAPAPPADAPPAEPAPPAEAPPAESA 501
++ G A PA P P + +
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQS 387
Score = 30.1 bits (67), Expect = 2.7
Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 7/104 (6%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAE-GAPAAEGAPAPAEGAPA----PPAEGAPRAEGAPPA 458
P P+ + A P+ P+ P+ A A A P
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P A A P P + + + P
Sbjct: 358 VTLPGTVALPAAEPVN--MQPQPMSTTETQQSSTGNITSTANGP 399
Score = 29.3 bits (65), Expect = 5.6
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 304 DLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPA 363
+ L + P+ + + ++ + P P + A +
Sbjct: 285 EKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQAS 344
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA--------AEGAPAPPAEGPPPAEG 415
A + G P++ P A PA + P + G A GP +
Sbjct: 345 AVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLP 404
Query: 416 APPAEAPPPA 425
A PA P +
Sbjct: 405 AAPASNIPVS 414
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 35.2 bits (81), Expect = 0.070
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 355 PPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P G P G P+ + AP A G P PP+
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPP-HGPPS 249
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
P EA P A + PA G P
Sbjct: 250 RYRPAYEAAPL----APAISSYGPAGGGPGS 276
Score = 31.7 bits (72), Expect = 1.1
Identities = 15/86 (17%), Positives = 19/86 (22%), Gaps = 2/86 (2%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P G A P+ + AP A G P G P
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGH--DGYSSHGGPLAPLAGGDRMGPPHGPP 248
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAP 496
+ A P + P P
Sbjct: 249 SRYRPAYEAAPLAPAISSYGPAGGGP 274
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P G + + G AP A G P PP+ P EA
Sbjct: 203 QTHRQRQPALLGQHPSSYGHDGYSSHG----GPLAPLAGGDRMGPPHGPPSRYRPAYEAA 258
Query: 497 PAESAPA 503
P A +
Sbjct: 259 PLAPAIS 265
Score = 31.3 bits (71), Expect = 1.3
Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 7/89 (7%)
Query: 361 PPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P G P G P+ + G AP A G + P
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG--GPLAPLAGG----DRMGPP 244
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
PP APA + P G
Sbjct: 245 HGPPSRYRPAYEAAPLAPAISSYGPAGGG 273
Score = 30.9 bits (70), Expect = 1.8
Identities = 15/85 (17%), Positives = 19/85 (22%), Gaps = 4/85 (4%)
Query: 341 GEPKPE-GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
G P + P G P+ + AP A G P A
Sbjct: 195 GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPA 254
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPP 424
A P + P P
Sbjct: 255 YEAAPLA---PAISSYGPAGGGPGS 276
Score = 30.2 bits (68), Expect = 3.2
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA---PPADAPPAEPAPPAEAPP 497
P+ + G AP A G P G P+ P +A P PA + P
Sbjct: 213 LGQHPSSYGHDGYSSH--GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPA 270
Query: 498 AES 500
Sbjct: 271 GGG 273
Score = 29.4 bits (66), Expect = 4.6
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P+ + P A G G P P E AP PA +
Sbjct: 213 LGQHPSSYGHDGYSSHGGPLAPLAGGDRM--GPPHGPPSRYRPAYEAAP----LAPAISS 266
Query: 462 PAPPAEG 468
P G
Sbjct: 267 YGPAGGG 273
Score = 28.6 bits (64), Expect = 9.1
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
P G P + P P+ + G AP A G +
Sbjct: 191 PDLPGRR-DPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG---GPLAPLAGG----DRMG 242
Query: 457 PAEGAPAPPAEGAPAPPAEGAPA---PPADAP 485
P G P+ A P A + P P
Sbjct: 243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGP 274
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 35.5 bits (81), Expect = 0.070
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P + A ++ A ++ P+ + +PPAE P E AP AP+ P
Sbjct: 158 PGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSP- 216
Query: 483 DAPPAEPAPPAEAPPAE 499
PP + A + PP E
Sbjct: 217 -PPPKQSAKEPQLPPKE 232
Score = 31.3 bits (70), Expect = 1.5
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGA--PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
P++ P P+ PPAE P E AP AE P P+ PPP + A + PP
Sbjct: 177 PSQKIPETTDPKPS---PPAEDKQKPKVESAPVAE-KPKAPSSPPPPKQSAKEPQLPP 230
Score = 30.1 bits (67), Expect = 2.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P + + P+PPAE P E AP P+ P PP ++ P
Sbjct: 176 TPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLP 229
Score = 29.3 bits (65), Expect = 5.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P++ P P P+ PAE P E AP AE P A +P PP + A
Sbjct: 177 PSQKIPETTDPKPS----------PPAEDKQKPKVESAPVAE-KPKAPSSPPPPKQSAKE 225
Query: 472 P 472
P
Sbjct: 226 P 226
Score = 28.6 bits (63), Expect = 9.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAP--PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A++ P+ + +PPAE P E AP AE AP + PP + + +
Sbjct: 172 ASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAP---SSPPPPKQSAKEPQL 228
Query: 456 PPAE 459
PP E
Sbjct: 229 PPKE 232
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 34.5 bits (79), Expect = 0.078
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
A ++A P + PAAE A P + A P A A P P
Sbjct: 86 APSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAAR-DGPTPDP 144
Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A+ A +P P E P + A
Sbjct: 145 TAQPATPDERRSPRQRPPVSGEPPTPSTPDA 175
Score = 32.1 bits (73), Expect = 0.46
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
A ++ +P + PA AE A + + A A P P
Sbjct: 86 APSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPT 145
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A+ A E P + P P+ P A
Sbjct: 146 AQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAA 184
Score = 31.8 bits (72), Expect = 0.71
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
A A ++ P + P AEA + AP + + + A P A
Sbjct: 78 AGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAAR 137
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
+G P P PA P E EP P+
Sbjct: 138 DG-------PTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPD 174
Score = 30.2 bits (68), Expect = 2.1
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
A + +G E +A + +P + P AE + APP A A P
Sbjct: 73 AAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPE--ASSTSATDEAATDP 130
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
PA A P P A+ P E P + PP + P A
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDA 175
Score = 30.2 bits (68), Expect = 2.2
Identities = 25/104 (24%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG---APPAEGAPPAEGAPPAEGAPP 392
E T + + D P AE + APP A P A +G P
Sbjct: 83 EATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTP 142
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
A A PP G PP + P A A + A
Sbjct: 143 DPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARE 186
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 35.0 bits (81), Expect = 0.091
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 7 AAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEAS-GARRKKGFMTPERKKKLR 65
+ AEA A+ EA + EELE + E+R R+EE A+ R+
Sbjct: 294 ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353
Query: 66 LLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED 107
L R + E E E E + +++R E ++ ++ E+
Sbjct: 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
Score = 30.0 bits (68), Expect = 3.9
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 40/203 (19%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
E+ A ET EA E E +R +LE LE + ++R + E ER+
Sbjct: 227 EQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET------------ERE- 273
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQE-YWQRIY 121
R++ AEE+ R+ R E + D+ +AE + D E R
Sbjct: 274 ------REELAEEV-RDLRERLEELEEERDDL---------LAEAGLDDADAEAVEARRE 317
Query: 122 NLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFN 181
LE EL + ++ LR + E + +L+++AAE
Sbjct: 318 ELEDRDEELRDRLEECRVAAQAHNEEAESLR--------EDADDLEERAEELREEAAELE 369
Query: 182 --FRSQLKAVKKREFSMEDAEKE 202
+AV+ R +E+ E+E
Sbjct: 370 SELEEAREAVEDRREEIEELEEE 392
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 33.5 bits (77), Expect = 0.095
Identities = 17/50 (34%), Positives = 17/50 (34%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P A A G P PP A A P A PPAE P A
Sbjct: 56 QTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105
Score = 33.5 bits (77), Expect = 0.10
Identities = 17/58 (29%), Positives = 19/58 (32%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
P + PP + G PP AE A PP E P P EAP
Sbjct: 48 PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105
Score = 30.1 bits (68), Expect = 1.4
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 447 EGAPRAEGAPPAEGAPAPPA------EGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P E P P + P P A +PP PAEP E
Sbjct: 45 ASIPGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPE 100
Score = 29.7 bits (67), Expect = 1.7
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P + P A A GPPP A A PP APA P AP
Sbjct: 48 PGLEDVTVQTTPPPP-ASAITNGGPPPPPPARAEAASPPPPEAPA---EPPAEPEPEAPA 103
Query: 446 AEGAPRAE 453
A+
Sbjct: 104 ENTVTVAK 111
Score = 28.5 bits (64), Expect = 4.4
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
PP + G PP P P A +PP APA P EP PAE
Sbjct: 55 VQTTPPPPASAITNGGPPP---PPPARAEAASPPPPEAPAEPP--AEPEPEAPAENTVT 108
Score = 28.5 bits (64), Expect = 4.5
Identities = 19/61 (31%), Positives = 20/61 (32%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
P E PPP A G P P + P A PPAE P PAE
Sbjct: 45 ASIPGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAE 104
Query: 468 G 468
Sbjct: 105 N 105
Score = 28.1 bits (63), Expect = 6.7
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
P + PP + G PP PPA A+ P PAE PPAE P A A
Sbjct: 48 PGLEDVTVQTTPPPPASAITNGGPPP--PPPARAEAASPPPPEAPAE--PPAEPEPEAPA 103
Query: 422 PPP 424
Sbjct: 104 ENT 106
Score = 27.7 bits (62), Expect = 7.5
Identities = 18/53 (33%), Positives = 19/53 (35%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
PPP A PPP A A +P P E PPAE P A
Sbjct: 54 TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 33.8 bits (77), Expect = 0.099
Identities = 29/95 (30%), Positives = 31/95 (32%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
PA PA A AA A A APA A A+ A A PA
Sbjct: 45 NNAYQPAYAKTAYAYAAPAVYAAAAPVYAAHAYAAPAVHYAAAAHYAAPAYAKYAYAAPA 104
Query: 467 EGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A A A AP A PA A A P +
Sbjct: 105 VTAKAAYAAPAPVYKTAYAAAAPAVYAHAAPVVAT 139
Score = 29.6 bits (66), Expect = 2.4
Identities = 36/117 (30%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
PA A APA A A P A AP A A A
Sbjct: 45 NNAYQPAYAKTAYAYA-----APAVYAAAA-------PVYAAHAYAAPAVHYAAAAHYAA 92
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
PA A+ A A PA A A A PA A APA A AP PA
Sbjct: 93 PAYAKYAYAAPAVTAKAAY-AAPAPVYKTAYAAAAPAVYAHAAPVVATATVAYSPAA 148
Score = 28.8 bits (64), Expect = 4.5
Identities = 32/114 (28%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
PA A A P A AP A A APA A+ A A PA
Sbjct: 45 NNAYQPAYAKTAYAYAAPAVYAAAAPVYAAHAYAAPAVHYAAAAHYAAPAYAKYAYAAPA 104
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A A AP P A APA A A P PA +
Sbjct: 105 VTAKAAYAAPA-------PVYKTAYAAA--APAVYAHAAPVVATATVAYSPAAA 149
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.0 bits (81), Expect = 0.10
Identities = 59/400 (14%), Positives = 117/400 (29%), Gaps = 55/400 (13%)
Query: 25 KRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA--AEELKR---- 78
K L +LER+ R+ K F+ +L + KK +ELK+
Sbjct: 997 KEYLLGKLEREL----ARLSN------KVRFIKHVINGELVITNAKKKDLVKELKKLGYV 1046
Query: 79 ---EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQ-----RIYNLEAIKYE- 129
+ ++ E+ +E E D D +DE + I++L K E
Sbjct: 1047 RFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEK 1106
Query: 130 LDREIMLKDFEITEL-GKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKA 188
L+ E+ K+ E+ +L D+ + + + + + E K K +++ KA
Sbjct: 1107 LNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKA 1166
Query: 189 VKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEG 248
K R+ ++ EK+KK + + + + + D + +
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQE 1226
Query: 249 EQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEK 308
+ + P + + + ++ S DDL ++
Sbjct: 1227 DDEEQKTKPKKSSVKRLKSKKNN------------------SSKSSEDNDEFSSDDLSKE 1268
Query: 309 LMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEG-APPAEGAP 367
K+ K Q S +P + EG+
Sbjct: 1269 ----------GKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSL 1318
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
A A A + ++ P
Sbjct: 1319 AALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRK 1358
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 34.7 bits (80), Expect = 0.11
Identities = 21/88 (23%), Positives = 23/88 (26%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
P P E AP E AE A AE P + P P
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPK 256
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAP 491
P P A P P P+ P
Sbjct: 257 PYISPDEYPSAPLPPELPQLLQPSLVIP 284
Score = 31.2 bits (71), Expect = 1.3
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 199 AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP 258
+ E E E + EP E+A + + P E PV+ P
Sbjct: 200 PPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDA----PEEENNKPVKPPVP 255
Query: 259 PPEPEP-EPPVEEIPPTPPSPVTP 281
P P E P +PP P + P
Sbjct: 256 KPYISPDEYPSAPLPPELPQLLQP 279
Score = 29.7 bits (67), Expect = 4.2
Identities = 22/86 (25%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
P P E AP E PA +PA PAE + P P
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETED--APEEENNKPVKPPV 254
Query: 476 GAPAP-PADAPPAE--PAPPAEAPPA 498
P P + P A P P P+
Sbjct: 255 PKPYISPDEYPSAPLPPELPQLLQPS 280
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 34.9 bits (80), Expect = 0.11
Identities = 13/43 (30%), Positives = 14/43 (32%)
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A + A P PA P AP PA G P A
Sbjct: 390 NLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNA 432
Score = 33.7 bits (77), Expect = 0.25
Identities = 13/47 (27%), Positives = 14/47 (29%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
P + AP A P PA P PA G P A
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNA 432
Score = 32.9 bits (75), Expect = 0.40
Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
PA A A P+ P PA P P A G P A
Sbjct: 388 PANLLHNAPQAAPAPSA-AAPEPKHQPAPEPRPVLAPTPASGEPNAA 433
Score = 32.2 bits (73), Expect = 0.78
Identities = 12/49 (24%), Positives = 13/49 (26%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
P + AP A P PA P A G P A
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAA 434
Score = 31.8 bits (72), Expect = 0.86
Identities = 12/43 (27%), Positives = 13/43 (30%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
+ AP A P PA P PA G P A
Sbjct: 390 NLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNA 432
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
P AP A AP+ A PA P AP + +A
Sbjct: 383 LDMSIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAA 433
Score = 31.0 bits (70), Expect = 1.5
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
PA A A PA A E P P PA G P A A
Sbjct: 388 PANLLHNAPQAAPAPSAAAPE-PKHQPAPEPRPVLAPTPASGEPNAAA 434
Score = 31.0 bits (70), Expect = 1.6
Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
PA P AP A P P EP P PA P
Sbjct: 388 PANLLHNAPQ---AAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEP 430
Score = 31.0 bits (70), Expect = 1.6
Identities = 13/45 (28%), Positives = 15/45 (33%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
A P P P+ AP + P E P PA E A
Sbjct: 389 ANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAA 433
Score = 30.6 bits (69), Expect = 1.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
PA AP+A P+ AP P + AP P AP P + P A
Sbjct: 386 SIPANLLHNAPQA-APAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNA 432
Score = 29.8 bits (67), Expect = 3.9
Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
P P AP P+ AP + PAP P A G P A
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPE----PRPVLAPTPASGEPNA 432
Score = 29.8 bits (67), Expect = 4.2
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PA AP + A P P P P ++
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGE 429
Score = 29.5 bits (66), Expect = 4.9
Identities = 11/48 (22%), Positives = 12/48 (25%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P + APAP A P AP P A
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAA 433
Score = 29.1 bits (65), Expect = 6.1
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A A A P+ AP P + AP P P PA P +A
Sbjct: 389 ANLLHNAPQAAPAPSAAAPEPKHQPAPEP----RPVLAPTPASGEPNAAA 434
Score = 28.7 bits (64), Expect = 8.8
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P A + APAP+ AP P + AP A P A
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAA 434
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 34.3 bits (79), Expect = 0.12
Identities = 33/162 (20%), Positives = 42/162 (25%), Gaps = 12/162 (7%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP---AEGAPPAE--GAPAAEGAPA 404
P+ APP P P A A PA G+P A A PA
Sbjct: 51 PSPQAPPPVAQLP--QPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPA 108
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE---GAPRAEGAPPAEGA 461
P P + P + P PA PA+ + GAP + P + +
Sbjct: 109 GPTIQTEPGQLYPV-QVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQS 167
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
E PP A A
Sbjct: 168 AQKNDES-QLQQQPNGETPPQQTDGAGDDESEALVRLREADG 208
Score = 28.9 bits (65), Expect = 6.2
Identities = 26/107 (24%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
AE P + PPP P PP A A PA + G+P
Sbjct: 44 VAEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQA---------LPAGDQQQHNTPTGSPA 94
Query: 458 AEGAPAPPAEGAPAPPA---EGAPAPPADAPPAEPAPPAEAPPAESA 501
A PA P E P P PA +P + A
Sbjct: 95 ANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPA 141
Score = 28.6 bits (64), Expect = 7.6
Identities = 20/106 (18%), Positives = 24/106 (22%), Gaps = 1/106 (0%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
AE PP P PP A A + P A P
Sbjct: 45 AEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALP 104
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G P P PA++P +PA
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPV-MVTQNPANSPLDQPAQQRALQQL 149
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 34.5 bits (79), Expect = 0.12
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
+PP PP P + A +P E P+PP GA G AP G PA
Sbjct: 10 SPPRRPSPPRPTPPRSPDA-SPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTF 68
Query: 476 GAPAPPADAPPAEPAPPAEAPP 497
+ APP + AP A PP
Sbjct: 69 SSSAPPRPPLGLDDAPAATPPP 90
Score = 33.3 bits (76), Expect = 0.23
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPA-PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
PP +PP PP + A E P+ P GA PP A A G PA
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTFS 69
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAP 496
+ APP P D PA PP +
Sbjct: 70 SSAPPR---PPLGLDDAPAATPPPLDWT 94
Score = 33.3 bits (76), Expect = 0.26
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
+P+ P+PP PP + A P E PP +P GA P A P A R
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRSPDASPEETPP----SPPGPGAEPPPGRAAGPAAPRR-R 58
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
G P + P P G PA PP
Sbjct: 59 PRGCPAGVTFSSSA----PPRPPLGLDDAPAATPPP 90
Score = 31.4 bits (71), Expect = 1.0
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP-AEGAPAPPADAPPAEPAPP 492
+P+P P+PP PR+ A P E P+PP GA PP PA P P PA
Sbjct: 8 SPSPPR-RPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGV 66
Query: 493 AEAPPAESAPA 503
+ A P
Sbjct: 67 TFSSSAPPRPP 77
Score = 30.2 bits (68), Expect = 2.5
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P +P PP E PP+ P AE P P A P G PA
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRP-RGCPAGVTF 68
Query: 403 PAPPAEGPPPAEGAPPAEAPPP 424
+ PP PA PPP
Sbjct: 69 SSSAPPRPPLGLDDAPAATPPP 90
Score = 29.9 bits (67), Expect = 2.8
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
+PP +PP P + A P E P P P AE PP P A P G PA
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPEETPP---SPPGPGAEPPPGRAAGPAAPRRRP-RGCPAG 65
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAP 456
+ A P + AP A P
Sbjct: 66 VTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 29.5 bits (66), Expect = 4.1
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
+PP +PP P + A P E PP+ P AE P PA P P
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPEE-TPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTF 68
Query: 420 EAPPPAEGAPAAEGAPAP 437
+ P + APA
Sbjct: 69 SSSAPPRPPLGLDDAPAA 86
Score = 29.5 bits (66), Expect = 4.7
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
+PP +PP P + A P E P +PP GA P G A AP G P
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPEETPP----SPPGPGAEPPPGRAAGPAAPRRRPRGCPAG 65
Query: 414 ---EGAPPAEAPPPAEGAPAAEGAP 435
+ P P + APAA P
Sbjct: 66 VTFSSSAPPRPPLGLDDAPAATPPP 90
>gnl|CDD|226193 COG3667, PcoB, Uncharacterized protein involved in copper
resistance [Inorganic ion transport and metabolism].
Length = 321
Score = 34.5 bits (79), Expect = 0.12
Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
P P P A P +AP PA A + G AP
Sbjct: 20 LVAQPHPTEAAQPHAHEHAPMDAPHPAM-PGMDHHAHSKMPGPE----------MAAPQM 68
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
+ P + AP P A + +P + A A PPA+
Sbjct: 69 DHGAMPHMDHAPPPIPTQHAAERSRSPASAAARVAAFPPAQ 109
Score = 31.0 bits (70), Expect = 1.3
Identities = 20/106 (18%), Positives = 24/106 (22%), Gaps = 13/106 (12%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA-----EGAPPAEGAPAAEGAPAPPA 407
A A G A+ P P A P + PA A P
Sbjct: 12 HAAAALGPLVAQPHPTEAAQPHAHEHAPMDAPHPAMPGMDHHAHSKMPGPEMAAPQMDHG 71
Query: 408 EGP--------PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P P + A P + A A PA
Sbjct: 72 AMPHMDHAPPPIPTQHAAERSRSPASAAARVAAFPPAQGMKEHDGG 117
Score = 29.5 bits (66), Expect = 4.8
Identities = 23/104 (22%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
A A G A+ P P A P + PA A + A
Sbjct: 10 HAHAAAALGPLVAQPHPTEAAQPHAHEHAPMDAPHPAM-PGMDHHAHSKMPGPEMAAPQM 68
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
P P A E + +P + A A PPA+G
Sbjct: 69 DHGAMPHMDHAPPPIPTQHAA-ERSRSPASAAARVA-AFPPAQG 110
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 34.6 bits (80), Expect = 0.13
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
AP A A AP A A A AP A+ +E A
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
Score = 34.2 bits (79), Expect = 0.18
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
EGA PA AP E A A A A AP A+ ++E A A P
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPL 333
Score = 33.8 bits (78), Expect = 0.22
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
AP A A APA A A P A+ +E
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSE 320
Score = 33.4 bits (77), Expect = 0.32
Identities = 18/53 (33%), Positives = 19/53 (35%)
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
AP A A APAP A A AP A A + AE A P
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPL 333
Score = 32.7 bits (75), Expect = 0.50
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPA-PPADAPPAEPAPPAEAPPAESAP 502
EGA PA AP + A AP A A PA AP A+ +E ++
Sbjct: 281 EGAAPA---AAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYV 328
Score = 32.7 bits (75), Expect = 0.50
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
AP A A APAP A AP A+A +E A
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
Score = 31.9 bits (73), Expect = 0.78
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
AP A A + AP A A APA AEG +
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAEN 324
Score = 31.1 bits (71), Expect = 1.6
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
EG APA E A PA A AE AP A+ +E A
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAE---APAAAPAAKAEGKSEFA 322
Score = 31.1 bits (71), Expect = 1.7
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
EGA PA E A PA A AE APAA A + A P
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAE-APAAAPAAKAEGKSEFAENDAYVHATP 332
Score = 31.1 bits (71), Expect = 1.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
APAA A A P A A A P A+ +E A
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
Score = 30.7 bits (70), Expect = 1.8
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAP-PADAPPAEPAPPAEAPPAESAPA 503
APA APA APAP A A AP A+A
Sbjct: 281 EGAAPAA----APAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAE 323
Score = 30.7 bits (70), Expect = 2.2
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
E A PA P E A PA A AE A A AEG A
Sbjct: 279 EVEGAAPAAAPAKQEAAAPAPAAAKAE--APAAAPAAKAEGKSEFAENDA 326
Score = 30.4 bits (69), Expect = 2.7
Identities = 15/57 (26%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
AP A A AP A A AP A+ +E A A P
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAK----AEAPAAAPAAKAEGKSEFAENDAYVHATPL 333
Score = 30.0 bits (68), Expect = 3.5
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
APA A PA AP A A AP A+
Sbjct: 281 EGAAPAAA---PAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSE 320
Score = 29.2 bits (66), Expect = 6.7
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
EGA PA E A PA A A PA A + AE
Sbjct: 281 EGAAPAAAPAKQEAAAPAPAAAKA--EAPAAAPAAKAEGKSEFAEN 324
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 33.8 bits (77), Expect = 0.14
Identities = 28/119 (23%), Positives = 33/119 (27%), Gaps = 5/119 (4%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
ET P P+ PP +P PP G + E
Sbjct: 44 QLETGYPFCPPTTPHPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGGKKKEKKKKETE 103
Query: 395 GAPAAEGAPAPPAEGPPPAEGA-----PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P E EG PP + PPP G EG P+P G EG
Sbjct: 104 KPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPLDQEG 162
Score = 30.3 bits (68), Expect = 1.5
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 334 SHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEGAPPAEGAP 391
+HE+ +P P G+ E P E EG P + PP + P
Sbjct: 79 THEKDLALQPPPGGKKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPED-PPPEDTPP 137
Query: 392 PAEGAPAAEGAPAP-PAEGPPPAEGAPPAEA 421
P G EG P+P P GP EG P A
Sbjct: 138 PPGGEGEVEGGPSPGPGPGPLDQEGLLPGVA 168
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 34.5 bits (79), Expect = 0.15
Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 324 VVKDTLRRQASHEETEGG---EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPP 380
+ ++ ++A+ E+ GG P + + G A+G P P EG
Sbjct: 417 IFREAREQRAAEEQRRGGGRSGPGGGSRSGSVGGGGRRDGAGADGKPRPRRKPRVEGEAD 476
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA----EGAPPAEAPPPAEGAPAAEGAPA 436
A A AE A A A G A E P P E P A AP
Sbjct: 477 AA-AAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGRPVEGAEPVSTPVPAPAAPR 535
Query: 437 PAEGAPAPPAEGAPRAEGAP 456
A P A ++ G+P
Sbjct: 536 KPTQVVATPVRAAAKSSGSP 555
Score = 34.2 bits (78), Expect = 0.19
Identities = 25/102 (24%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP---PPAEGAPAAEG 433
P + G A+G P P + P EG A A P A AA+
Sbjct: 437 SGPGGGSRSGSVGGGGRRDGAGADGKPRPRRK--PRVEGEADAAAAGAETPVVAAAAAQA 494
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
A P + R G P P APA P +
Sbjct: 495 PGVVAADGERAPRKRRRRRNGRPVEGAEPVSTPVPAPAAPRK 536
Score = 31.8 bits (72), Expect = 0.82
Identities = 28/111 (25%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
EG A G A AE G P G+ + G R +GA
Sbjct: 400 PVEGEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSGSVGGGGRRDGAG- 458
Query: 458 AEGAPAPP------AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A+G P P E A P A A A A E AP
Sbjct: 459 ADGKPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAA---DGERAP 506
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 34.2 bits (78), Expect = 0.15
Identities = 39/170 (22%), Positives = 50/170 (29%), Gaps = 20/170 (11%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAE---GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E + A A E PP +P A G PP E PP P + +P A G
Sbjct: 220 EEQKAVTAHAHRRISGEARPPKHISFSSPHAHGRPPVETRPPN---PVSVSSPQAHGRHP 276
Query: 399 AEGAPAPPAEGPPP-AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
E P P A P + P P + G + A+G + R P
Sbjct: 277 GETHTPPLVTVPSSKAHDRNPVQTPTP----TSVSGYSSQAKGLEKQAGGESERTSSVPS 332
Query: 458 AEGAPAP------PAEGAPAPPAEGAPAPPADAP--PAEPAPPAEAPPAE 499
E P P + P +E P EP E
Sbjct: 333 -EQFPLPLPVLLPLGQSGPLESSESEETDEYAGPKGLPEPELELVELQEE 381
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.1 bits (79), Expect = 0.17
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 155 FVRPILKKVSKYENKFAK---LQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEP 211
F+ I K + + A L ++ EF KA KK + +E AEK+++ E ++
Sbjct: 373 FLSIIFKHNPELAARLAAFLELTEEEIEF-LTGSKKATKKIKKIVEKAEKKREEEKKEKK 431
Query: 212 ESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGE 249
+ E E E + + E+ +E E E
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 33.4 bits (77), Expect = 0.31
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 135 MLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREF 194
+ E+TE +++ L G K K K+ +KA + + + + +K++
Sbjct: 388 LAAFLELTE--EEIEFLTGS---------KKATKKIKKIVEKAEK---KREEEKKEKKKK 433
Query: 195 SMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPL 244
+ +KE++ +E E +KK E E E E + + + K+ L
Sbjct: 434 AFAGKKKEEE----EEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATL 479
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 34.3 bits (79), Expect = 0.18
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
E + E E + ++E+LE + RR + + R+ R +++ L ++
Sbjct: 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE----IRARDRRIERLEKELE 491
Query: 73 AEELKREQERRALERKRVI 91
++ + E+ R L R +
Sbjct: 492 EKKKRVEELERKLAELRKM 510
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 33.9 bits (78), Expect = 0.19
Identities = 26/145 (17%), Positives = 33/145 (22%), Gaps = 26/145 (17%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA-------------- 428
+P A + APP + P P +A PP
Sbjct: 93 SSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNISDA 152
Query: 429 ---------PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP---APPAEGAPAPPAEG 476
A++ A P PA AP PA P P
Sbjct: 153 LSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH 212
Query: 477 APAPPADAPPAEPAPPAEAPPAESA 501
PPA P + A
Sbjct: 213 HKTATVAVPPATSGKPKSGAASARA 237
Score = 31.6 bits (72), Expect = 0.95
Identities = 15/69 (21%), Positives = 16/69 (23%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
P PA P PA A P G P + A
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAAS 234
Query: 463 APPAEGAPA 471
A APA
Sbjct: 235 ARALSSAPA 243
>gnl|CDD|236365 PRK09041, motB, flagellar motor protein MotB; Validated.
Length = 317
Score = 33.8 bits (78), Expect = 0.19
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+AE A E A A A P AP A + PA PA P
Sbjct: 272 KAEEAILHENA-ESVALSAQNEPVSALEAPAAAPAASVPAAPAAEPR 317
Score = 31.1 bits (71), Expect = 1.3
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
AE A E A + A A P AP A PA PA
Sbjct: 273 AEEAILHENAESVALSAQNEPVSALEAPAAAPAA-SVPAAPAAEPR 317
Score = 30.3 bits (69), Expect = 2.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 446 AEGAPRAEGAPP-AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
AE A E A A A P AP A A + PA AP AEP
Sbjct: 273 AEEAILHENAESVALSAQNEPVSALEAPAAAPAASVPA-APAAEPR 317
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 34.1 bits (79), Expect = 0.20
Identities = 20/83 (24%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA---PAPPAEGAP 478
PPP PA A PA AP A A + P G P P
Sbjct: 555 PPPDLAPPAGPPARPDDWSGLPIPAVPAPAAAAAADGDDDGDPDNGGIRRQPELPEHEEI 614
Query: 479 APPADAPPAEPAPPAEAPPAESA 501
P P E + ++A
Sbjct: 615 VPEPRPPENEFDLLDDDDDDDAA 637
Score = 31.4 bits (72), Expect = 1.4
Identities = 22/86 (25%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P PPA + P PA APAA A A P G R + P
Sbjct: 556 PPDLAPPAGPPARPDDWSGLPIPAVPAPAA--AAAADGDDDGDPDNGGIRRQPELPEHEE 613
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPA 487
P P E D A
Sbjct: 614 IVPE---PRPPENEFDLLDDDDDDDA 636
Score = 29.1 bits (66), Expect = 6.2
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 217 RIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP---PPEPEPEPPVEEIPP 273
P P +A D D D + + E P EE+ P PPE E + ++
Sbjct: 575 LPIPAVPAPAAAAAADGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDD 634
Query: 274 TPPSPVTPNP 283
P +
Sbjct: 635 DAARPRQLDR 644
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 32.5 bits (75), Expect = 0.21
Identities = 17/44 (38%), Positives = 18/44 (40%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
A A + A AP A P A A A A PA A AEG
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEG 79
Score = 32.1 bits (74), Expect = 0.31
Identities = 16/44 (36%), Positives = 16/44 (36%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
A A P A P A P A A AA A APA A
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 30.9 bits (71), Expect = 0.68
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
AP A+ A A P APA A A A A PA A
Sbjct: 38 APVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 30.5 bits (70), Expect = 0.93
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP----AEGAP 442
A AP A A A AP A A A PA AP A +P AP
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAP 94
Query: 443 APPA 446
+P A
Sbjct: 95 SPDA 98
Score = 29.8 bits (68), Expect = 1.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A + A AP A AP A A A A +A A
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAA 74
Score = 29.8 bits (68), Expect = 1.9
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
A A AP A+ A A P APA A A AP A A
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHV 81
Score = 29.8 bits (68), Expect = 1.9
Identities = 14/43 (32%), Positives = 15/43 (34%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
A + A AP A A A A AP A A AE
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 29.4 bits (67), Expect = 2.5
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP---PAE 475
A A P A A A AP A A A A AP A PA A +P
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAP---AAAPAAAAAEAEGHVVTSPMVGTFY 91
Query: 476 GAPAPPADAPP 486
AP+P DAPP
Sbjct: 92 RAPSP--DAPP 100
Score = 29.4 bits (67), Expect = 2.8
Identities = 14/43 (32%), Positives = 14/43 (32%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
A P A P AP A A AA A AP A
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 27.8 bits (63), Expect = 8.5
Identities = 19/45 (42%), Positives = 19/45 (42%)
Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
A AP A A A AP A A A A A PA A AEG
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEG 79
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 33.5 bits (76), Expect = 0.22
Identities = 34/99 (34%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
PP A PA P P A P GAP P P P + P
Sbjct: 9 PPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQP-QPVPTSAMTP 67
Query: 451 RAEGAPPAEGAP-APPAEGAPAPPAEGAPAPPADAPPAE 488
PA+ AP APPA GA P A P PPA P E
Sbjct: 68 HVVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPNGE 106
Score = 32.7 bits (74), Expect = 0.44
Identities = 30/100 (30%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P PPA AP P AP AP P + P A P
Sbjct: 9 PPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPH 68
Query: 466 -AEGAPAPPAEGAPAPPADAPPAE---PAPPAEAPPAESA 501
+ APA PA AP A P P PPA P E
Sbjct: 69 VVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPNGEIV 108
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 33.5 bits (77), Expect = 0.22
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 20 AEDEAKRLKLEELERKRA--EVRRRM------EEASGARRKKGFMTPERKKKLRLLLRKK 71
E K+ EE + ++ ++ R++ EE + + PER + + LL
Sbjct: 337 LRRELKKKIREEFDEEQPVIDIERQLSGLAVSEEVKEDLPDEQLVPPERIRLISKLLTWP 396
Query: 72 AAEELKREQERRA 84
+E L+ E ERR
Sbjct: 397 TSETLEDELERRI 409
Score = 30.8 bits (70), Expect = 1.9
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 11 TPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPE----------- 59
T + A+ + +L+EL RKR +++ + G + K TP
Sbjct: 277 TDEQKASV-----EEDPELQELIRKRDHLKKEIIALYG-QVAKAKGTPLYERLEKRRREV 330
Query: 60 --RKKKLRLLLRKKAAEELKREQERRALER 87
+++LR L+KK EE EQ +ER
Sbjct: 331 RNERQRLRRELKKKIREEFDEEQPVIDIER 360
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 33.7 bits (77), Expect = 0.23
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 231 TDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
TD +VE +ET P + E+ P P E P+ T P E
Sbjct: 700 TDRVNVEVVEETERP---DTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTE 751
Score = 28.7 bits (64), Expect = 8.1
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 218 IPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPP 273
+ + E P++ T T PE E EP E P
Sbjct: 705 VEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.8 bits (78), Expect = 0.25
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 56 MTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDE 108
++P +KKLR RK + K E E+ A ++K + + D + D
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
Score = 29.5 bits (67), Expect = 4.4
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 6 PAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKK 63
P AE E A+R KL + +RK AE + EEA A KK +K K
Sbjct: 391 PLLAEGEEEEGENGNLSPAERKKLRKKQRK-AEKKAEKEEAEKAAAKKKAEAAAKKAK 447
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 33.8 bits (77), Expect = 0.26
Identities = 22/136 (16%), Positives = 30/136 (22%), Gaps = 3/136 (2%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
T G + P G P G P + A G P + + P
Sbjct: 84 TRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQP 143
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
+ P P + A A +G P + P G P
Sbjct: 144 GGQAGGMMQQSSGQPQSQQPNQ---MGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPG 200
Query: 458 AEGAPAPPAEGAPAPP 473
G P
Sbjct: 201 MPGGGGQGQMQQQGQP 216
Score = 30.0 bits (67), Expect = 3.3
Identities = 16/114 (14%), Positives = 20/114 (17%), Gaps = 6/114 (5%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
P G P G P + A G G
Sbjct: 87 PQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQ 146
Query: 451 RAEGAPPAEGAP------APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
+ G P + A G P + PP P
Sbjct: 147 AGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPG 200
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 33.3 bits (76), Expect = 0.27
Identities = 27/139 (19%), Positives = 35/139 (25%), Gaps = 4/139 (2%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
P + EG E + A +P + P + PP
Sbjct: 50 DPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQI 109
Query: 421 APPPAEGAPAAEGAPAPAEGAPAP-PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
+ PPA P A P P AP P + E
Sbjct: 110 SDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQ 169
Query: 480 PPADAPPAEPAPPAEAPPA 498
P EPAP + PP
Sbjct: 170 P---EEVVEPAPEVKRPPR 185
Score = 32.5 bits (74), Expect = 0.42
Identities = 29/146 (19%), Positives = 38/146 (26%), Gaps = 9/146 (6%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+ + A +G E + A +P + P A P
Sbjct: 49 DDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQ 108
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
PPA P + P A + APAP A P + A P
Sbjct: 109 ISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVP---- 164
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPA 487
E P PAP PP
Sbjct: 165 -----EQQVQPEEVVEPAPEVKRPPR 185
>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional.
Length = 290
Score = 33.1 bits (75), Expect = 0.29
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEG-----APPAEGAPPAEGAPAAEGAPAPPAE 408
A PA + GA A G AE P G+ + + PA P
Sbjct: 30 ASPARVSFEEPADRARRGAGQARGRSQAERRFHHYDEARADYPYYTGSSSEDERPADPRP 89
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
P P A P PA GA G+ A +P P +GA G + A+
Sbjct: 90 SRRPHAQ-PEASGPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKSACADS 148
Query: 469 APAPPAEGAPAPPADAPPAEPAPP---AEAPPAESAP 502
A A AP PA A + AP + +AP
Sbjct: 149 AALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPTAP 185
Score = 28.4 bits (63), Expect = 8.9
Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG---------APPAEAPPP 424
P +E PA+ P E + PA G G +P PP
Sbjct: 72 PYYTGSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRRAESPSPRDPPN 131
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
+GA A G + + A AP A A + AP + AP P
Sbjct: 132 PKGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPTAPWTP 188
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 33.4 bits (76), Expect = 0.30
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
A G G P + P + A PA P+ G P +PP
Sbjct: 73 EAEAERGRRAGMGGRNKATKPS-RRNKTTQCRPTSLALATAATMPATPSSGKSPKVSSPP 131
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA-PRAEGAPPA 458
+ E A + + + P A+ P
Sbjct: 132 SIPSLSEEDEGAERNSGGDDSSHTDNESTQSQPEADDEPDL 172
Score = 31.1 bits (70), Expect = 1.8
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A A P+ + P + PA P +P
Sbjct: 71 GSEAEAERGRRAGMGGRNKATKPSRRNKTTQCRPTSLALATAA--TMPATP-SSGKSPKV 127
Query: 483 DAPPAEPAPPAEAPPAE 499
+PP+ P+ E AE
Sbjct: 128 SSPPSIPSLSEEDEGAE 144
Score = 28.8 bits (64), Expect = 7.6
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 1/104 (0%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
A G G P + P + P+ G P + PP
Sbjct: 73 EAEAERGRRAGMGGRNKATKPS-RRNKTTQCRPTSLALATAATMPATPSSGKSPKVSSPP 131
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
+ + + E A + + + P AEG
Sbjct: 132 SIPSLSEEDEGAERNSGGDDSSHTDNESTQSQPEADDEPDLAEG 175
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 33.2 bits (76), Expect = 0.32
Identities = 17/58 (29%), Positives = 18/58 (31%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A A E A PA AP + P P APAP A P A
Sbjct: 126 AALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTA 183
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 33.2 bits (76), Expect = 0.33
Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 18/80 (22%)
Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEP 266
++ +++ P EP PEP SA P Q P P P
Sbjct: 534 RFRKWWQRRRGPPYAEP-PEPVSAD-------------TPPSLQLDDPPTFPSALPLPHA 579
Query: 267 PVEEIPPTPPSPVTPNPEEL 286
+P TPP PN L
Sbjct: 580 SGLSLPGTPP----PNYNTL 595
Score = 32.4 bits (74), Expect = 0.59
Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGA--PAPPADAPPAEPAPP 492
P P A PP+ PP + P P A PP
Sbjct: 544 GPPYAEPPEPVSADTPPSLQLDDPPTFPSALPLPHASGLSLPGTPP 589
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 32.9 bits (75), Expect = 0.34
Identities = 25/112 (22%), Positives = 31/112 (27%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
P + P AP+ P AP E + A A
Sbjct: 151 PGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPD 210
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A G P P A A A + P A +P +P P A AP
Sbjct: 211 DAPGTPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPHQTQPLPTAAAP 262
Score = 31.4 bits (71), Expect = 1.2
Identities = 15/111 (13%), Positives = 23/111 (20%), Gaps = 4/111 (3%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P AP + + + E + + P
Sbjct: 156 TTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGT 215
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P A+ P+P A +P P A AP
Sbjct: 216 PAQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPH----QTQPLPTAAAP 262
Score = 30.2 bits (68), Expect = 2.6
Identities = 23/132 (17%), Positives = 30/132 (22%), Gaps = 16/132 (12%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP-APPAEGPPPA 413
P + P AP + + + E + P
Sbjct: 151 PGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPD 210
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
+ A G PA P AE P P A +P P
Sbjct: 211 D----------APGTPAQPLTPLAAEAQAKAEVISTPS-----PVTAAASPTITPHQTQP 255
Query: 474 AEGAPAPPADAP 485
A AP AP
Sbjct: 256 LPTAAAPVLSAP 267
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 33.3 bits (77), Expect = 0.35
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND-LRGKFVRPILKKVSKYENK 169
+L +YW I L + + LK ++ G ++ + + R LKK
Sbjct: 90 ELLLDYWNEIIEKAKKNSPLFKSL-LKKQKVEVEGNKLIIKVNNEIERDHLKK-----KH 143
Query: 170 FAKLQKKAAEFNFRSQLKAVKKREFSMEDAEK-EKKPEWVKEPESKKKRIPIPEPEPEPE 228
KL K+ +F F LK + + S E+ EK E + E E +K+ + + E E +
Sbjct: 144 LPKLIKQYEKFGF-GILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKK 202
Query: 229 SATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEP 266
+ D ++G G++ EE+ P E E
Sbjct: 203 KQSKNFDPKEGPVQ----IGKKIDKEEITPMKEINEEE 236
>gnl|CDD|233461 TIGR01547, phage_term_2, phage terminase, large subunit, PBSX
family. This model detects members of a highly
divergent family of the large subunit of phage
terminase. All members are encoded by phage genomes or
within prophage regions of bacterial genomes. This is a
distinct family from pfam03354 [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 396
Score = 33.2 bits (76), Expect = 0.36
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 119 RIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAA 178
+ Y A Y + + +KD + E ++ V F+ +
Sbjct: 253 KKYIYVAEYYYSNADEQVKD-AVLEYAIEIKQFVNVKQLIYADNVDLK--TFSTFARLEH 309
Query: 179 EFNFRS-------QLKAVKKREFSMEDAEKEKKPEWVKEPESK 214
+F AV+ R +D +K +++KEP +
Sbjct: 310 QFYQDVNAIKAQGAKLAVRDRIEVFQDLLASRKLKFLKEPCNT 352
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 33.1 bits (75), Expect = 0.38
Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 16/185 (8%)
Query: 321 LKSVVKDTLRRQASHEETE----GGEPK-PEGEAPADGAPPAEGAPPAEGAPPAEGAPPA 375
+K ++K + ++ A EE + P+ PE AP + E E P
Sbjct: 485 IKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPK 544
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP-----PPAEGAPA 430
EG P E G P PA E P+ E + P P P
Sbjct: 545 EGGKPGETKEGEVGKKPG---PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPR 601
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP-APPAEGAPAPP--AEGAPAPPADAPPA 487
+ P + P P++ P + +P PP P+ P EG + PP
Sbjct: 602 SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPK 661
Query: 488 EPAPP 492
P PP
Sbjct: 662 SPKPP 666
Score = 29.7 bits (66), Expect = 5.1
Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 4/185 (2%)
Query: 184 SQLKAVKKREFSMEDAEKEKKPEWVKEPES-KKKRIPIPEPEPEPESATDASDVEDGKET 242
S++ + K+ +D + K PE K+P+ + + P P+ D E+
Sbjct: 570 SKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES 629
Query: 243 PLPPEGEQPPVEEVPPP-PEPEPEPPVEEIPPTPPSPVTPNPEELWL--YLKDTVSASNP 299
P P+ PP P PE + P +P P P +E + YL +
Sbjct: 630 PKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKET 689
Query: 300 VSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEG 359
+ L E S + T + E +P G+ A+ E
Sbjct: 690 KTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEF 749
Query: 360 APPAE 364
P E
Sbjct: 750 FTPPE 754
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 32.9 bits (75), Expect = 0.41
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP---PAEGAPAPPAEGAPAPPAE 475
+ A G P P A P EG P+ P P +G+ A P P
Sbjct: 118 EQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPP-TAFYPGN 176
Query: 476 GAPAPPADAPPAEPAP 491
G PP + P P
Sbjct: 177 GVTPPPQVTYQSVPVP 192
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 32.9 bits (75), Expect = 0.42
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P++ APA + P+PP P+ E +P P A APP+ G
Sbjct: 202 PSSSAAPAAPKAKPSPP---PPKEEEVEKPASSPEPKASKPSAPPSSG 246
Score = 30.6 bits (69), Expect = 2.2
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
P + P A A P+ PP E +P P P+ P R +P A
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLA 255
Score = 29.8 bits (67), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 456 PPAEGAPAPP-AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
P + APA P A+ +P PP E PA +P + + P+ P +
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246
Score = 29.8 bits (67), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 464 PPAEGAPAPP-AEGAPAPP----ADAPPAEPAPPAEAPPAESAP 502
P + APA P A+ +P PP + P + P P A P A +
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSS 245
Score = 29.4 bits (66), Expect = 5.0
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
P + APAA P PPP E A P A P+ + A P
Sbjct: 202 PSSSAAPAA---PKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPL 254
Score = 28.7 bits (64), Expect = 8.4
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 251 PPVEEVPPPPEPEPEPPVEEI---PPTPPSPVTPNPEE 285
P +P P PP EE P + P P P
Sbjct: 204 SSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSA 241
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.1 bits (76), Expect = 0.42
Identities = 35/208 (16%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
AE + E RL++ ELE + E+++ + + + +++L L R+
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
Query: 73 AEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDR 132
E + E+ L+ E + + + +E + LE+ EL+
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
Query: 133 EIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKK- 191
++ ++ +L Q+ L + R + ++ + E++ +LQ++ E + + +K+
Sbjct: 380 QLETLRSKVAQLELQIASLNNEIER-LEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
Query: 192 -REFSMEDAEKEKKPEWVKEPESKKKRI 218
E + E E+ E ++ E + +
Sbjct: 439 QAELEELEEELEELQEELERLEEALEEL 466
Score = 30.8 bits (70), Expect = 2.2
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 15/163 (9%)
Query: 7 AAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRL 66
AA + A +LE+LE + E+ +E + + + E + +L
Sbjct: 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
Query: 67 LLRKKAAEELKREQERRALERK----RVIDERCGEPKDTDDMAEDEIGDL---CQEYWQR 119
LL ++A+ E R LE R ++ + E + + +++ L + R
Sbjct: 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 120 IYNLEAI---KYELDREIMLK-----DFEITELGKQVNDLRGK 154
I NL+ +Y L E + + E +++ L K
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 32.9 bits (75), Expect = 0.44
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE--GAPAPPAEGAPRAEGAPPAEG 460
P PPP E PP+ E A + AE + P GA + +
Sbjct: 41 PPRGVCFPPPPEHDPPSPHGARDEAARLCQIQELLAEMRSSEEYPDSGAEAEDDD--DDD 98
Query: 461 AP---APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
AP A P E A G AP D P PAPP P E
Sbjct: 99 APDDVAYPDEYAEDDFLPGDGAPDHDPAPCGPAPPGGLTPEE 140
Score = 29.5 bits (66), Expect = 4.3
Identities = 32/121 (26%), Positives = 35/121 (28%), Gaps = 19/121 (15%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA-------- 421
E A E P P P PP PP GA A
Sbjct: 15 EDAGREEAVEPETTTRCVFPPETFYNPPRGVCFPPPPEHDPPSPHGARDEAARLCQIQEL 74
Query: 422 --------PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP-APPAEGAPAP 472
P GA A + A A P E A + P +GAP PA PAP
Sbjct: 75 LAEMRSSEEYPDSGAEAEDDDDDDAPDDVAYPDEYA--EDDFLPGDGAPDHDPAPCGPAP 132
Query: 473 P 473
P
Sbjct: 133 P 133
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 32.7 bits (75), Expect = 0.45
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
+S+ +A+ VE + + P PP+ P E P PP+ ++ +P
Sbjct: 288 NADSSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETP--PPASLSHSP 343
>gnl|CDD|184735 PRK14547, rplD, 50S ribosomal protein L4; Provisional.
Length = 298
Score = 32.2 bits (73), Expect = 0.48
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A E + A A P A A+ AP E + P +G +E
Sbjct: 197 QSALEAFVGAKSRWGSAAAAAAPVPATNVADQAPYGEDSARPGNPPEGQAIKGNEDSE-- 254
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P+ P G A A+A A A++
Sbjct: 255 --KFHTPSSPWYGRTQAEVWFRSAAAAEAAGFVNAVKADS 292
Score = 29.5 bits (66), Expect = 4.3
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A AA A+ P E + PP + E + P+ P G +AE
Sbjct: 215 AAAAPVPATNVADQAPYGEDSARPGNPPEGQAIKGNEDSEKFHT--PSSPWYGRTQAE-- 270
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A AE A A A + DA
Sbjct: 271 --VWFRSAAAAEAAGFVNAVKADSEEEDA 297
>gnl|CDD|235357 PRK05177, minC, septum formation inhibitor; Reviewed.
Length = 239
Score = 32.2 bits (74), Expect = 0.49
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 459 EGAPAPPAE-GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
EGA G P G PA + P EPA P AP A APA
Sbjct: 84 EGARPSLLGPGMPPALVGGRPAGDVEIPEEEPAAPPPAPAAPEAPA 129
Score = 29.5 bits (67), Expect = 3.3
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
EGA + P P P G P + P E A APA E A P+
Sbjct: 84 EGARPSLLGPGMP---PALVGGRPAGDVEIPEEEPAAPPPAPAAPEAPAAVPS 133
Score = 29.5 bits (67), Expect = 3.8
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 453 EGAPPAE---GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
EGA P+ G P G PA E PA PPA AP A A
Sbjct: 84 EGARPSLLGPGMPPALVGGRPAGDVEIPEEEPAAPPPAPAAPEAPAAVP 132
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 32.7 bits (74), Expect = 0.51
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 223 PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
P E + +A+ ++ T P +P VE + + + P E+ P
Sbjct: 57 PADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAA-KQVEKAP 115
Query: 283 PEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSV 324
E + D ++S+ + +L++K AT Q ++++
Sbjct: 116 AEPATVSNPDNATSSSTPATYNLLQKSALRSGATVQSFIQTI 157
Score = 29.3 bits (65), Expect = 5.9
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEG-APPAEGAPAPPAEGAPAPPAEGAP-APPAD 483
E APA E A AE A E P + P E P A +
Sbjct: 54 ETAPADE-ASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAAKQVE 112
Query: 484 APPAEPAPPAEAPPAESAP 502
PAEPA + A S+
Sbjct: 113 KAPAEPATVSNPDNATSSS 131
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 31.9 bits (73), Expect = 0.54
Identities = 25/105 (23%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G P P A A G P +GA GA A G
Sbjct: 89 GGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGSFLGGAAQTAAGV- 147
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A G G G + PAE A G + PA A
Sbjct: 148 ---AGGMLLGNGLENLFGGHSQPAEIVDAIGEGGDGSGPAPADDT 189
Score = 30.8 bits (70), Expect = 1.3
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
PPA A PPA A G P+ A P
Sbjct: 95 PPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPG 132
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.5 bits (74), Expect = 0.54
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 240 KETPLPPEGEQPPVEEVPPPPEPEPEPPVE------EIPPTPPSPVTPNPEEL 286
+ T LP QPP PPPP PEP P E + P PEEL
Sbjct: 262 RATRLPEPEPQPP----PPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 32.9 bits (75), Expect = 0.56
Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 179 EFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVED 238
EFN LK K + E+ + E V
Sbjct: 1417 EFNQEEALKVTK---------TNKLFIEFEDSIGN-------QLNAEEHTGNVGEEYVFK 1460
Query: 239 GKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
K EG+QP E PP+P+PE + + EE
Sbjct: 1461 AKNPGHYKEGDQPITFEPTEPPKPDPEKR---LDSNNKIDLPSTGEE 1504
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 32.6 bits (75), Expect = 0.60
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
P A A P A G AP A AP A+ AP+ +
Sbjct: 18 FPAFATAAAPATQPLANAAGQVMP-AAPAAAAPVVAQAAPSRDVT 61
Score = 31.8 bits (73), Expect = 1.1
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A + P A AP + PA PA A
Sbjct: 10 ALALGMSAFPAFATAAAPATQPLANAAGQVMPAAPAAAAPVVAQ 53
Score = 30.3 bits (69), Expect = 3.2
Identities = 13/54 (24%), Positives = 14/54 (25%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
P A P A A P A AP A+ PAP
Sbjct: 18 FPAFATAAAPATQPLANAAGQVMPAAPAAAAPVVAQAAPSRDVTLTFAQLGPAP 71
Score = 29.5 bits (67), Expect = 4.8
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
P A AP + + PA PA A P AP +
Sbjct: 18 FPAFATAAAPATQPLANAAGQVMPAAPAAAA---PVVAQAAPSRDVT 61
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 32.3 bits (74), Expect = 0.60
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKL 309
PPP P EE P EE ++ V A+ +I L E+L
Sbjct: 297 RPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEEL 349
Score = 28.8 bits (65), Expect = 8.6
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 245 PPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS 277
PP P EE E PE EE +
Sbjct: 298 PPPSPPEP-EEEEEEEEEVPEEEEEEEEEEERT 329
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 32.7 bits (75), Expect = 0.61
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 24/92 (26%)
Query: 133 EIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKR 192
E++ K+ E+ +L ++ KKV + K++K E+ R QLKA+KK
Sbjct: 196 ELLKKELELLKLQNKIT-----------KKVEE------KMEKTQREYYLREQLKAIKK- 237
Query: 193 EFSMEDAEKE------KKPEWVKEPESKKKRI 218
E +E +K+ +K E +K PE KK I
Sbjct: 238 ELGIEKDDKDELEKLKEKLEELKLPEEVKKVI 269
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 32.3 bits (73), Expect = 0.62
Identities = 27/99 (27%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
A +PP P + ++ PP EG + P E P E P GP
Sbjct: 49 APPSPPLSRRLPVDHPVTSQHDPPFEGQSEVQPPPSPEDIPVYEEDWPTFLNPNVDKAGP 108
Query: 411 PPAEGAPP--AEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
+ A P E PPP E PAP P E
Sbjct: 109 AVPQEAIPLQKELPPPQVPIEQKEVKPAPLADQSPPEPE 147
Score = 30.0 bits (67), Expect = 3.2
Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
APP+ PP P + ++ PP EG + P+P P E P
Sbjct: 49 APPS---PPLSRRLPVDHPVTSQHDPPFEGQSEVQPPPSPEDI-PVYEEDWPTFL----- 99
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
P + PA P E P + PP + P E PAP A+ +P P
Sbjct: 100 --------NPNVDKAGPAVPQEAIPLQKELPPPQ-VPIEQKEVKPAPLADQSPPEPESWN 150
Query: 486 PAE 488
PA+
Sbjct: 151 PAQ 153
Score = 28.8 bits (64), Expect = 7.4
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
PP EG + PPP+ P P G + A P + PP P
Sbjct: 71 PPFEGQSEVQ-PPPSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKELPPPQ--VP 127
Query: 471 APPAEGAPAPPADAPPAEP 489
E PAP AD P EP
Sbjct: 128 IEQKEVKPAPLADQSPPEP 146
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 30.4 bits (69), Expect = 0.62
Identities = 17/69 (24%), Positives = 18/69 (26%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
P GA APP G P P P PP + P
Sbjct: 43 ESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEP 102
Query: 479 APPADAPPA 487
PP PP
Sbjct: 103 PPPYPGPPQ 111
Score = 28.9 bits (65), Expect = 2.2
Identities = 21/77 (27%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
A P P A A APP G PP P PP
Sbjct: 37 AQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYM 96
Query: 414 EGAPPAEAPPPAEGAPA 430
P E PPP G P
Sbjct: 97 AD--PQEPPPPYPGPPQ 111
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 31.2 bits (71), Expect = 0.67
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
G P AEG + A P A A+G P AE P + AE A A APA
Sbjct: 85 GLPGAEG--TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPA 142
Query: 437 PAEGAPAPPAEGA 449
A A E A
Sbjct: 143 AEAAAAAAAEEEA 155
Score = 30.8 bits (70), Expect = 0.87
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
GA + A P++ A+G P A A + A A AP
Sbjct: 87 PGAEGTLKVAEPKPSKLELFNAALAEADGGP-----TAEATTPKKKKAAAEAAAAEAAAP 141
Query: 492 PAEAPPAESAPA 503
AEA A +A
Sbjct: 142 AAEAAAAAAAEE 153
Score = 30.0 bits (68), Expect = 1.6
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G P AEG + A A+G P AEA P + AAE A A A
Sbjct: 85 GLPGAEG--TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPA 142
Query: 443 APPAEGAPRAEGA 455
A A A E A
Sbjct: 143 AEAAAAAAAEEEA 155
Score = 28.5 bits (64), Expect = 4.4
Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
G P AEG A P A A A+G P A + + A A A A
Sbjct: 85 GLPGAEG-TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAA 143
Query: 469 APAPPAEGAPA 479
A A
Sbjct: 144 EAAAAAAAEEE 154
Score = 28.5 bits (64), Expect = 4.6
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
G P AEG AE P+ A A A + A A A A AP
Sbjct: 85 GLPGAEGTLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAE--AAAAEAAAPA 142
Query: 487 AEPAPPAEAPPAE 499
AE A A A
Sbjct: 143 AEAAAAAAAEEEA 155
Score = 28.1 bits (63), Expect = 6.5
Identities = 17/59 (28%), Positives = 19/59 (32%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
EPKP + A P A + A A AE A PA A A A
Sbjct: 97 EPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 8.0
Identities = 17/69 (24%), Positives = 20/69 (28%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
GA + + A A A + A A AEA PA A
Sbjct: 87 PGAEGTLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
Query: 430 AAEGAPAPA 438
AA A A
Sbjct: 147 AAAAAEEEA 155
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 31.8 bits (71), Expect = 0.68
Identities = 42/140 (30%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
P A PA PP P + E + A A G P +P
Sbjct: 30 PQATIPAPAAPCPPDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACA 89
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
AP PA PA A APAP A PPA PP PAP P
Sbjct: 90 APAPA--------CPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACP 141
Query: 481 PA--DAPPAEPAPPAEAPPA 498
P+ PPA P P + PA
Sbjct: 142 PSTRQCPPAPPLPTPKPAPA 161
Score = 31.4 bits (70), Expect = 1.1
Identities = 36/130 (27%), Positives = 43/130 (33%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
G P +P PA A A PAP PP P A PA PA
Sbjct: 78 GQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
P+ + PAPP A A P P PA PA +P EP
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197
Query: 491 PPAEAPPAES 500
P + A++
Sbjct: 198 IPDKIIDADN 207
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 32.4 bits (74), Expect = 0.70
Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 8 AAETPAEAAAASAEDEAKRLKLEE----LERKRAEVRRRMEEASGARRKKGFMTPERKKK 63
+ + A+AE E ++ E L++ R +++R E + K ERK++
Sbjct: 623 QKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQ 682
Query: 64 -----------LRLLLRKKAA--EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
L+ LL ++ A E LK + ER GE + I
Sbjct: 683 AETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIE 742
Query: 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFE---ITELGKQVNDL 151
Q L+ +K + DRE+ D + + EL +Q+ +L
Sbjct: 743 ---AARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEEL 783
Score = 30.8 bits (70), Expect = 2.3
Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 34/183 (18%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPE-----RKKKLRLL 67
A A AE++ + E E+KRAE R AR + E K +L +
Sbjct: 619 AVAKQKQAEEQLVQANAELEEQKRAEAEAR-TALKQARLDLQRLQNEQQSLKDKLELAIA 677
Query: 68 LRKKAAEELKR--EQERRALERKRVIDERCGEPKDTDDMAEDEIGDL------CQEYWQ- 118
RK+ AE R + + + L + E D WQ
Sbjct: 678 ERKQQAETQLRQLDAQLKQLLEQ------------QQAFLEALKDDFRELRTERLAKWQV 725
Query: 119 ----RIYNLEAIKYELDREIMLKDFEITELGKQVN-DLRGKFVRPILKKVSKYENKFAKL 173
L + ++ + EL KQ + +L V P V + + + +L
Sbjct: 726 VEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPN--TVKELKRQIEEL 783
Query: 174 QKK 176
+
Sbjct: 784 ETT 786
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 30.8 bits (70), Expect = 0.71
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
G A A A PA AP A A A P +A
Sbjct: 11 GEAAAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45
Score = 30.4 bits (69), Expect = 0.83
Identities = 12/39 (30%), Positives = 12/39 (30%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A AP APA A A A P A A
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 30.4 bits (69), Expect = 0.88
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
A A APAA A AP A PPA A
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVA 49
Score = 30.0 bits (68), Expect = 1.3
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A APAP A A AP A A A A P A + A
Sbjct: 14 AAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
A AP APA A A P A
Sbjct: 14 AAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45
Score = 28.8 bits (65), Expect = 2.5
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 474 AEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A PA AP PA A A PA + PA
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPA 42
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
A A AP A A A A A PPA + A
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 28.5 bits (64), Expect = 3.8
Identities = 16/39 (41%), Positives = 16/39 (41%)
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
E A AA A PA P A A PA PP A A
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 28.5 bits (64), Expect = 4.3
Identities = 9/33 (27%), Positives = 9/33 (27%)
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A AP APA A A A
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAA 44
Score = 28.1 bits (63), Expect = 4.8
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 463 APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
A A APA APA A A PA P A +
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVA 49
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
A A PA A A A A A A P A +
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 27.7 bits (62), Expect = 7.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
A PA A PA AP A A A PA A
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAAA 44
Score = 27.3 bits (61), Expect = 8.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
G A A A PA A A AP A P A
Sbjct: 11 GEAAAAAPAPAAAPATAPAAAAAAAPAATPPAAA 44
Score = 27.3 bits (61), Expect = 9.3
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
E P A AP A A PPA +
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVA 49
>gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1). All
proteins in this family for which functions are known
are part of a multiprotein complex made up of homologs
of RPA1, RPA2 and RPA3 that bind ssDNA and function in
the recognition of DNA damage for nucleotide excision
repairThis family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford University)
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 608
Score = 32.4 bits (74), Expect = 0.71
Identities = 18/75 (24%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P G P A PA PP AP+ E A A P
Sbjct: 106 PELKVRDKIGNPVTYEKYLDSWHEEQVLASKPATNPANPPNAKAPKNEVASYNN-AANPE 164
Query: 466 AEGAPAPPAEGAPAP 480
AP P G+
Sbjct: 165 RGNAPPAPNSGSTRR 179
Score = 32.0 bits (73), Expect = 0.87
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P + + + PA P PP P E A A AP P
Sbjct: 117 PVTYEKYLDSWHEEQVLASKPATNPA----NPPNAKAPKNEVASYNNAANPERGNAPPAP 172
Query: 446 AEGAPR 451
G+ R
Sbjct: 173 NSGSTR 178
Score = 28.5 bits (64), Expect = 9.8
Identities = 14/71 (19%), Positives = 17/71 (23%), Gaps = 8/71 (11%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
P + + A PP P E A A P G
Sbjct: 117 PVTYEKYLDSWHEEQVLASKP----ATNPANPPNAKAPKNEVASYNNAANPERGNA---- 168
Query: 434 APAPAEGAPAP 444
PAP G+
Sbjct: 169 PPAPNSGSTRR 179
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 32.1 bits (73), Expect = 0.75
Identities = 27/110 (24%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA-EGAPAPPAEGAPR 451
A A E + P E P P P + P P GAP P +
Sbjct: 42 ALIALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPL---PPPLPVDLGAPVLPDQQVEE 98
Query: 452 AEGAPPAEGAPAPPAEGAPAPP----AEGAPAPPADAPPAEPAPPAEAPP 497
A+ P A A A A+A PA APP P
Sbjct: 99 AKDQPRRLRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQP 148
Score = 30.1 bits (68), Expect = 2.9
Identities = 20/101 (19%), Positives = 24/101 (23%), Gaps = 2/101 (1%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
+ G P P P PP P +
Sbjct: 47 QGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEEAKDQPRRL 106
Query: 437 PAEGAPAPP--AEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
A A + RA G A A A PA AP P +
Sbjct: 107 RAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQ 147
Score = 29.4 bits (66), Expect = 4.4
Identities = 26/109 (23%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
A A E P E P P + P P P GAP + A
Sbjct: 42 ALIALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLP-PPLPVDLGAPVLPD-QQVEEA 99
Query: 447 EGAPRAEGAP--PAEG--APAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+ PR A A A AP A APP P
Sbjct: 100 KDQPRRLRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQP 148
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 31.8 bits (72), Expect = 0.79
Identities = 14/51 (27%), Positives = 15/51 (29%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
PR GA P + P A G P P A P P A
Sbjct: 192 EPRTTRRGRRRGARRPRSRRRPRGGAAGPPVPAEPAAPERPPADPTPTSAR 242
Score = 29.9 bits (67), Expect = 3.0
Identities = 14/50 (28%), Positives = 15/50 (30%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
P G R P + P A G P P AP P P A
Sbjct: 192 EPRTTRRGRRRGARRPRSRRRPRGGAAGPPVPAEPAAPERPPADPTPTSA 241
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.0 bits (71), Expect = 0.79
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 22/68 (32%)
Query: 26 RLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRAL 85
++++LE ++ E+ +R+ E L K KRE+E R +
Sbjct: 126 EQEIKKLEEEKEELEKRVAE----------------------LEAKLEAIEKREEEERQI 163
Query: 86 ERKRVIDE 93
E KR DE
Sbjct: 164 EEKRHADE 171
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 31.8 bits (72), Expect = 0.80
Identities = 45/263 (17%), Positives = 77/263 (29%), Gaps = 17/263 (6%)
Query: 224 EPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPV--EEIPPTPPSPVTP 281
E S + V+ K+ P P + + + + P PP + P +
Sbjct: 32 EEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQ 91
Query: 282 NPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341
P + V QP + Q +
Sbjct: 92 APPSHQYPSQLPPQQVQSV---------------PQQPTPQQEPYYPPPSQPQPPPAQQP 136
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+ + P +PP + P A+ AP G P E + P E
Sbjct: 137 QAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEP 196
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P+ A PP + P + P + +P G P + P + P ++G +
Sbjct: 197 LPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYS 256
Query: 462 PAPPAEGAPAPPAEGAPAPPADA 484
PP++G A AP + +
Sbjct: 257 GPPPSKGNHGSVASYAPQGSSQS 279
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 32.1 bits (73), Expect = 0.80
Identities = 19/90 (21%), Positives = 22/90 (24%), Gaps = 3/90 (3%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAP---PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
P A PA + P A P A A + + AE
Sbjct: 22 NPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETS 81
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
P A PAA P EG
Sbjct: 82 DPTSEATDTTTSEARTVTPAATETSKPVEG 111
Score = 32.1 bits (73), Expect = 0.86
Identities = 15/93 (16%), Positives = 22/93 (23%), Gaps = 2/93 (2%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
A P PA + + P A A+ P A +
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE 79
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
+ P A + A E + P E
Sbjct: 80 TSDPTSE--ATDTTTSEARTVTPAATETSKPVE 110
Score = 31.7 bits (72), Expect = 1.0
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P A PA A + P ++ P A A AP+
Sbjct: 22 NPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATT--AAEAPSSSETAE 79
Query: 470 PAPPAEGA-PAPPADAPPAEPAPPAEAPPAE 499
+ P A ++A PA + P E
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETSKPVE 110
Score = 31.0 bits (70), Expect = 1.7
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P A PA + P A P AEAP +E A +
Sbjct: 22 NPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETS 81
Query: 432 EGAPAPAEGAPA-PPAEGAPRAEGAPPAEG 460
+ + + E + P EG
Sbjct: 82 DPTSEATDTTTSEARTVTPAATETSKPVEG 111
Score = 31.0 bits (70), Expect = 1.8
Identities = 21/100 (21%), Positives = 26/100 (26%), Gaps = 11/100 (11%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPA-PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
P A PA A + P A P A A AP+
Sbjct: 22 NPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAAT--------TAAEAPS 73
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
+E A A +E PA + P EG
Sbjct: 74 SSETAETSDP--TSEATDTTTSEARTVTPAATETSKPVEG 111
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 31.6 bits (72), Expect = 0.80
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 14 EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
E A A +E +L + L+ + A + R+ + + ++ L +
Sbjct: 44 EEALEGATNEDGKLAADLLKLEVARKKERLNQI--------------RARISQLKEEIEQ 89
Query: 74 EELKREQERRALERKR 89
+ + E+ +RAL ++R
Sbjct: 90 KRERIEELKRALAQRR 105
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 31.9 bits (73), Expect = 0.80
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
E A PPP A PA A P +E A A AP PA+
Sbjct: 110 EEGEEILASSPPPIPEAVPATAEP-SESANAQFPAPPLTRAVCQSPAKSKRFT 161
Score = 31.2 bits (71), Expect = 1.6
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A +PP A PA P+ A+A P P A A
Sbjct: 117 ASSPPPI-PEAVPATAEPSESANAQFPAP-PLTRAVCQSPAK 156
Score = 30.8 bits (70), Expect = 2.0
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 244 LPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
+ P E VP EP + P V +P +
Sbjct: 115 ILASSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAK 156
Score = 29.6 bits (67), Expect = 4.6
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
A PP A PA P+ PA A PA++
Sbjct: 116 LASSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKSKRFT 161
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 32.0 bits (73), Expect = 0.81
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
G PA PA A +GA A A + P++ P P
Sbjct: 8 EDAGRPAAPAASDDAAATDGAGANAAAPAAPAESDPSKKRPGVMLP 53
Score = 29.3 bits (66), Expect = 5.4
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
PA APA ++ A A GA A A PAE P+ G P G
Sbjct: 5 PATEDAGRPAAPAASDDAAATDGAGANAAAPAAPAESDPSKKRPGVMLPLEVGT 58
Score = 29.0 bits (65), Expect = 7.4
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
APA G PA PA A D A A PA ++ +
Sbjct: 4 APATEDAGRPAAPAASDDAAATDGAGANAAAPAAPAESDPSKK 46
Score = 28.6 bits (64), Expect = 8.5
Identities = 15/46 (32%), Positives = 16/46 (34%)
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
APA E A PA A + A A A APA P
Sbjct: 4 APATEDAGRPAAPAASDDAAATDGAGANAAAPAAPAESDPSKKRPG 49
>gnl|CDD|163521 TIGR03809, TIGR03809, TIGR03809 family protein. This protein
family contains proteins with a median length of about
175, including a strongly conserved N-terminal region of
about 55 amino acids, a conserved extreme C-terminal
region of about 15 amino acids, and highly variable
sequence in between the two. Members are found
invariably with a member of family TIGR03808.
Length = 168
Score = 31.0 bits (70), Expect = 0.84
Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P + + P E APPA PA P A
Sbjct: 63 NRPVDLSWLGRNKKLPPRAPFYAADETVEPRRFAPPAA-LPASAPAIVALPEEAAAEPRA 121
Query: 482 ADAPPAEPAPPAEAPPAESA 501
A PAEP ++A AE A
Sbjct: 122 APDVPAEPNDASDADVAEVA 141
Score = 30.2 bits (68), Expect = 1.6
Identities = 23/101 (22%), Positives = 26/101 (25%), Gaps = 4/101 (3%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
E P + PP A A E PA AP P
Sbjct: 56 TREATPDNRPVDLSWLG--RNKKLPPRAPFYAADETVEPRRFAPPAALPASAPAIVALPE 113
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A A PA P + + A AEP E A
Sbjct: 114 EAAAEPRAAPDVPAEPND--ASDADVAEVAEPDVVPEWQHA 152
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 31.7 bits (72), Expect = 0.85
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+G A PA + APP PP P+ P + ESA +
Sbjct: 212 KGPVAAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISNSVESASS 256
Score = 28.3 bits (63), Expect = 9.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPP--AEPAPPAEAPPAESA 501
A PA + APP P PP+ + + +++ A
Sbjct: 216 AAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISNSVESASSDSKGGRGA 264
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 31.8 bits (72), Expect = 0.87
Identities = 31/121 (25%), Positives = 33/121 (27%), Gaps = 3/121 (2%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
AP A PAA G AP E P A E G +
Sbjct: 87 RAPVLLAAWYGRPDPAATGGLAPGPEFAWPPRVAVVNGTLVLREARETDSGMYVLSVSRA 146
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA-PAPPADAPPAEPAPPAEAPPAESA 501
P A RA P P G PP + A A PA P P AP
Sbjct: 147 --PNSTAARAVVFLVVGPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPI 204
Query: 502 P 502
Sbjct: 205 A 205
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 31.9 bits (73), Expect = 0.90
Identities = 25/96 (26%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA----PAEGAPAPP 445
AP A PA P PPP E A + A A A PP
Sbjct: 252 APRATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAALPP 311
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
A A G A A A A G P
Sbjct: 312 DLLARLAAGGARARARSAGGAGAAQKGNRRGRPLGS 347
Score = 31.5 bits (72), Expect = 1.2
Identities = 27/107 (25%), Positives = 29/107 (27%), Gaps = 14/107 (13%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP--------AEAPP 423
AP A P P E PP + P E + A A PP
Sbjct: 252 APRATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAALPP 311
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
AA GA A A A G A G P G P
Sbjct: 312 DLLARLAAGGARARARSA------GGAGAAQKGNRRGRPLGSRPGEP 352
Score = 30.8 bits (70), Expect = 2.0
Identities = 26/99 (26%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAP--PAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
PA PP E PP P + PP + AE E A A PP A
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAALPPDLLARLA 318
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
G A A G P G PR
Sbjct: 319 AGGARA---RARSAGGAGAAQKGNRRGRPLGSRPGEPRG 354
Score = 29.2 bits (66), Expect = 5.9
Identities = 43/159 (27%), Positives = 46/159 (28%), Gaps = 33/159 (20%)
Query: 370 EGAPPAEGAPPA-----------EGAPPAE-GAPPAEGAPAAEGAPAPPAEGPPPAEGA- 416
EGA E AP A +G + P + A PA GPPP A
Sbjct: 144 EGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAA 203
Query: 417 --------------PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE--GAPRAEGAPPAEG 460
P A A A A G A E A A APRA P
Sbjct: 204 LCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLP---- 259
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
AP P E P PP E AE E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 29.2 bits (66), Expect = 6.1
Identities = 12/40 (30%), Positives = 13/40 (32%)
Query: 246 PEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
P QPP EE PPPP P + E
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 31.7 bits (72), Expect = 0.92
Identities = 43/163 (26%), Positives = 46/163 (28%), Gaps = 24/163 (14%)
Query: 351 ADGAPPAEGAPPAEGAPP----AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE------ 400
ADG A G P A A A G PA GAP P + AA
Sbjct: 213 ADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPATGAPTVTPLPDPDRTEAAADTRVHV 272
Query: 401 ---GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP------- 450
G PA A A GA + P P A A E PP +
Sbjct: 273 VGGGQPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEA 332
Query: 451 ----RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
A A A G A G A AP A P
Sbjct: 333 TDLIIAADAVVAAGVAAAARSGVIGLLAGNAPTLTVTDAAAAP 375
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 31.4 bits (71), Expect = 0.98
Identities = 22/80 (27%), Positives = 25/80 (31%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
+ P A P P + A A G G P GAP P G
Sbjct: 3 NMQNYPQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGG 62
Query: 452 AEGAPPAEGAPAPPAEGAPA 471
G PP G A AE A +
Sbjct: 63 GSGGPPGGGEVAGEAEDAMS 82
Score = 31.4 bits (71), Expect = 1.0
Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
P P G PA G PA G P G GAP P G
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQ-GMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGG 66
Query: 484 APPAEP-APPAEAPPAE 499
P A AE +E
Sbjct: 67 PPGGGEVAGEAEDAMSE 83
Score = 30.6 bits (69), Expect = 1.5
Identities = 24/77 (31%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 362 PAEGAPPAEGAP-PAEGAPPAEG-APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P P G PA G P +G A G P G G AP GP G
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAP--GGPVGGGGGGSG 65
Query: 420 EAPPPAEGAPAAEGAPA 436
P E A AE A +
Sbjct: 66 GPPGGGEVAGEAEDAMS 82
Score = 30.2 bits (68), Expect = 1.9
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 356 PAEGAPPAEGAP-PAEGAPPAEG-APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P P G PA G P +G A G P G P G GAP P G
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGG----GAPGGPVGGGGGG 63
Query: 414 EGAPP--AEAPPPAEGAPA 430
G PP E AE A +
Sbjct: 64 SGGPPGGGEVAGEAEDAMS 82
Score = 29.9 bits (67), Expect = 2.7
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA-PAPPAEGAPRAEGAPPAEGAP 462
P A P G PA P +G A +G P G GAP G+
Sbjct: 7 YPQAMNPQMGGGNYPAPGQPAQQGY-ANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSG 65
Query: 463 APPAEGAPAPPAEGAPAPPAD 483
PP G A AE A + D
Sbjct: 66 GPPGGGEVAGEAEDAMSEFDD 86
Score = 29.5 bits (66), Expect = 4.2
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 380 PAEGAPPAEGAP-PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
P P G PA G PA +G GP G A A G P G
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPV--GGGGGPGAGGGAPGGPV--GGGGGG 63
Query: 439 EGAPAPPAEGAPRAEGAP 456
G P E A AE A
Sbjct: 64 SGGPPGGGEVAGEAEDAM 81
Score = 28.7 bits (64), Expect = 5.8
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 374 PAEGAPPAEGAP-PAEGAPPAEG-APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA--- 428
P P G PA G P +G A G P GP GAP G+
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGP 67
Query: 429 PAAEGAPAPAEGAPA 443
P AE A +
Sbjct: 68 PGGGEVAGEAEDAMS 82
Score = 28.3 bits (63), Expect = 7.5
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA-EG 389
+ G+P +G A P G A G P G + G P E
Sbjct: 14 QMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGPPGGGEV 73
Query: 390 APPAEGAPA 398
A AE A +
Sbjct: 74 AGEAEDAMS 82
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.1 bits (71), Expect = 1.00
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 24 AKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERR 83
+ +LE+L+++ E+++R+ E A+ +K E ++ LL + E + ++ +
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQ-AQIEKLKKGREETEERTELLEELKQLEKELKKLKA 124
Query: 84 ALERKR-----VIDERCGEPKDTDDMAE---DEIGDLCQEYWQRIYNLEAIKYELDREIM 135
LE+ I++ E K + A D I L + Y + K+ LD +
Sbjct: 125 ELEKYEKNDPERIEKLKEETKVAKEAANRWTDNIFSL-KSYLSK-------KFGLDEAQL 176
Query: 136 LKDFEITE 143
K+F I E
Sbjct: 177 RKEFGIPE 184
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 30.6 bits (70), Expect = 1.0
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 15 AAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAE 74
A A + + L++ +L + +++ +E A + + K +K
Sbjct: 30 ALAQKKKGKKGELEITDLNEEYKDLKESLEAA--------LLDKKELKAWEKAEKKAEKA 81
Query: 75 ELKREQERRALERKR----VID 92
+ K E+++ E + V+D
Sbjct: 82 KAKAEKKKAKKEEPKPRLFVLD 103
>gnl|CDD|220880 pfam10812, DUF2561, Protein of unknown function (DUF2561). This
family of proteins with unknown function appears to be
restricted to Mycobacterium spp.
Length = 207
Score = 30.9 bits (70), Expect = 1.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A+ P P ++G P + A A A + + PA P+ +
Sbjct: 91 ADDEPPPRSQGLRRRPGQPVRAGYAAARTEKESVPATHAPSRTDAG 136
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 31.9 bits (72), Expect = 1.0
Identities = 17/69 (24%), Positives = 22/69 (31%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
A AP +PP PA+ A A P P A + P+ A
Sbjct: 1143 ISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAA 1202
Query: 450 PRAEGAPPA 458
P+A A
Sbjct: 1203 PQASVNDSA 1211
Score = 30.7 bits (69), Expect = 2.6
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 412 PAEGAPPAEAP------PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P + +AP A AP +P + AP A AP AE A P
Sbjct: 1127 PVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVP 1186
Query: 466 AEGA--PAPPAEGAPAPPADAPPAEPAPP 492
+ + P A AP A +
Sbjct: 1187 VQQSVDYMPSVAQAAAPQASVNDSAIQQV 1215
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.8 bits (72), Expect = 1.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQER 82
E KR +LE+L ++ AE R+ EE R +KAA E R Q +
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQ------------------RRREEEKAAMEADRAQAK 293
Query: 83 RALERKR 89
+E++R
Sbjct: 294 AEVEKRR 300
Score = 29.8 bits (67), Expect = 3.9
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 20 AEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
A++EA+R + E +R+R E + M EA A+ K +R++KL+ LL+K +
Sbjct: 262 AKEEAERERQAEEQRRREEEKAAM-EADRAQAKA--EVEKRREKLQNLLKKASR 312
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 30.2 bits (68), Expect = 1.1
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
GAPA APA PA P P + A AA GA A P
Sbjct: 22 GAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMP 69
Score = 29.0 bits (65), Expect = 2.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
GAP APA PA P E +P A AP A A+A P+
Sbjct: 22 GAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPS 66
Score = 28.6 bits (64), Expect = 3.5
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
PA+ A P P + A P A +
Sbjct: 24 PAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAG 60
Score = 27.5 bits (61), Expect = 9.1
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
PA+ A PA P E +P AP P A A +P
Sbjct: 24 PAQAAAPA-QPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSP 67
Score = 27.5 bits (61), Expect = 9.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
GAPA APA P P A A + A A A+ P+P
Sbjct: 22 GAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSP 67
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.8 bits (72), Expect = 1.1
Identities = 23/134 (17%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 19 SAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR 78
++ + + + L +L+++ ++ ++ A++K +K+L+ + E +
Sbjct: 440 TSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQL 499
Query: 79 EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
+E++ RK+ +E + +E + + Q +LE +L+ ++ LK+
Sbjct: 500 AEEKK---RKKEEEETAARAAAQAAASREECAESLK---QAKQDLEMEIKKLEHDLKLKE 553
Query: 139 FEITELGKQVNDLR 152
E L K+ +LR
Sbjct: 554 EECRMLEKEAQELR 567
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 31.2 bits (71), Expect = 1.1
Identities = 26/112 (23%), Positives = 31/112 (27%), Gaps = 11/112 (9%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
A E G +P A A + G G +
Sbjct: 215 TAACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASP 274
Query: 462 PAPPAEGA----------PAPPAEGAP-APPADAPPAEPAPPAEAPPAESAP 502
A + A A P P APPAE APPA APP + P
Sbjct: 275 AALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 30.1 bits (68), Expect = 2.6
Identities = 25/104 (24%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPP-AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A G A P + PA + A +PA
Sbjct: 223 VASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMV 282
Query: 451 RAEGA-----PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ PP PAPPAE AP PA PPA P
Sbjct: 283 YVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 29.7 bits (67), Expect = 4.1
Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
A G P AP + P+ + P + PP + A + A +
Sbjct: 223 VASKGGNDRGVSP-GTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDM 281
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P + A +A PP PAPPAE AP PA PA P
Sbjct: 282 VYVPLDAYNQLL---AGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
>gnl|CDD|114299 pfam05568, ASFV_J13L, African swine fever virus J13L protein. This
family consists of several African swine fever virus
J13L proteins.
Length = 189
Score = 31.0 bits (69), Expect = 1.1
Identities = 24/70 (34%), Positives = 25/70 (35%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P G GA A A P PA A P + A G P A APA
Sbjct: 84 PQPGIAKPAGASTASAGKPVMDRPATNRLVADKPATNKPVMDNLGMAAGGPAAASAPASA 143
Query: 466 AEGAPAPPAE 475
A PA PAE
Sbjct: 144 AASDPAHPAE 153
Score = 28.3 bits (62), Expect = 8.2
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
P G GA A P PA A PA P + A G PA
Sbjct: 81 EVTPQPGIAKPAGASTASAGKPVMDRPATNRLVADK-----PATNKPVMDNLGMAAGGPA 135
Query: 431 AEGAPAPAEGA-PAPPAE 447
A APA A + PA PAE
Sbjct: 136 AASAPASAAASDPAHPAE 153
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 31.2 bits (70), Expect = 1.1
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
E P+ E A + + E+ + QP EE P +E T TP
Sbjct: 71 ERTPKLEKAPNTN--EEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTP 128
Query: 282 NPE 284
+
Sbjct: 129 KTK 131
Score = 28.6 bits (63), Expect = 9.5
Identities = 21/94 (22%), Positives = 33/94 (35%)
Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPP 246
+A R+ EK K SK ++I P+ E + A+ +++
Sbjct: 64 QAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTT 123
Query: 247 EGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
E P + PP P+P TP SP
Sbjct: 124 ESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTI 157
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 31.8 bits (72), Expect = 1.1
Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
E P PP + A GA A A PA A A+ A
Sbjct: 846 EFEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPA--------KKAAAKKVAAKTAA 897
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGA 455
A A + A P A P A A
Sbjct: 898 AKTPRKAAKKKAAPPAAGLKPSAALA 923
Score = 31.1 bits (70), Expect = 1.5
Identities = 21/83 (25%), Positives = 26/83 (31%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G+ E E PP + A GA A A A+ A A
Sbjct: 839 EAGKVNFEFEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAA 898
Query: 399 AEGAPAPPAEGPPPAEGAPPAEA 421
A + PPA G P+ A
Sbjct: 899 KTPRKAAKKKAAPPAAGLKPSAA 921
Score = 29.9 bits (67), Expect = 3.7
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
E P PP + A A GA + G + A PA+ A A A
Sbjct: 846 EFEPRESKFPPRKTA-------AAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAA 898
Query: 474 AEGAPA-PPADAPPAEPAPPAEAPPA 498
A APPA P+ A A
Sbjct: 899 KTPRKAAKKKAAPPAAGLKPSAALAA 924
Score = 29.2 bits (65), Expect = 6.0
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 358 EGAPPAEGAPPAEGAPPAEGA--PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
E P PP + A GA G + A PA+ A A + A A A P +
Sbjct: 846 EFEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVA-AKTAAAKTPRKA 904
Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
A APP A P+A A A P
Sbjct: 905 AKKKAAPPAAGLKPSAALAAVIGAEPVARP 934
Score = 29.2 bits (65), Expect = 6.0
Identities = 16/76 (21%), Positives = 21/76 (27%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P E P A+ A+ A PA+ A + A A P
Sbjct: 849 PRESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKK 908
Query: 472 PPAEGAPAPPADAPPA 487
A P+ A A
Sbjct: 909 AAPPAAGLKPSAALAA 924
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved
in a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 29.9 bits (68), Expect = 1.1
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 30 EELERKRAEVRRRMEEASG-ARRKKGFMTPERKKKLRLLLRKKAAEELKR-EQERRALER 87
E ER +++ +E+A +RKK ++ +R RKKA LK+ E++
Sbjct: 24 VEKERALEALKKELEDAERRKKRKKMA---KKYHMVRFFERKKATRRLKQLEKKLEETSD 80
Query: 88 KRVIDE 93
++ I +
Sbjct: 81 EKEIKD 86
>gnl|CDD|234273 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are found
in endospore-forming bacteria such as Bacillus subtilis
appear redundant during vegetative growth, although the
member designated spoIIIJ (stage III sporulation protein
J) has a distinct role in spore formation. YidC, its
mitochondrial homolog Oxa1, and its chloroplast homolog
direct insertion into the bacterial/organellar inner (or
only) membrane. This model describes an N-terminal
sequence region, including a large periplasmic domain
lacking in YidC members from Gram-positive species. The
multifunctional YidC protein acts both with and
independently of the Sec system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 366
Score = 31.5 bits (72), Expect = 1.1
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
P P A A+ A A A P ADAP A A A A A+
Sbjct: 25 PGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAAAAAADAAAATAK 74
Score = 30.4 bits (69), Expect = 2.0
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
G PP + AA+ A A A A P A PA A A A
Sbjct: 23 SDPGPPPPKPPAAAQTASAQSATAAATPA-AAPPAADAPAAAAAADAAAATAKR 75
Score = 29.6 bits (67), Expect = 3.5
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
P P P A+ A A A APPA APA A A
Sbjct: 25 PGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAAAAAADAAAATA 73
Score = 29.6 bits (67), Expect = 4.0
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
P PP PP A A A PAA A A A A A A+
Sbjct: 25 PGPPPPKPPAAAQTASA-QSATAAATPAAAPPAADAPAAAAAADAAAATAK 74
Score = 28.8 bits (65), Expect = 6.6
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
P PP A + + A A PA A P A+ A A A A
Sbjct: 26 GPPPPKPPAAAQTASAQSATAAATPA--AAPPAADAPAAAAAADAAAATAK 74
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 31.0 bits (70), Expect = 1.1
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
A G A GA E A A A A+ AP A P A APPA A A+
Sbjct: 108 ASGVKAATGAGKVEVAAEAAPA-KAKKEAAPKAAPAPAAAAAPPAAAAAGAD 158
Score = 30.6 bits (69), Expect = 1.4
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
G A GA E A A A E AP A AP A APPA A A+
Sbjct: 107 DASGVKAATGAGKVEVAAEAAPA-----KAKKEAAPKAAPAPAAAAAPPAAAAAGADDLT 161
Query: 404 APPAEGP 410
GP
Sbjct: 162 KITGVGP 168
Score = 29.1 bits (65), Expect = 5.0
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
A+ + A + AAE APA A+ AP A AP A APPA A
Sbjct: 106 ADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGA 157
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 30.9 bits (70), Expect = 1.1
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
PAE P + P++G+ P AP G P A+ P PAE
Sbjct: 138 PAEYYSPKHSSSQGTSTTRPSDGSATPN-TSAPPTPGNPAAQ--PEKPAE 184
Score = 29.4 bits (66), Expect = 3.0
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
PAE P + A P PP G P A+ PAE
Sbjct: 138 PAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAE 184
Score = 29.4 bits (66), Expect = 3.6
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 374 PAEGAPPAEGAPPAE-GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
PAE P + P++G A APP G P A+ PAE P
Sbjct: 138 PAEYYSPKHSSSQGTSTTRPSDG-SATPNTSAPPTPGNPAAQPEKPAETPKG 188
>gnl|CDD|236196 PRK08241, PRK08241, RNA polymerase factor sigma-70; Validated.
Length = 339
Score = 31.4 bits (72), Expect = 1.2
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P GAPA + P EP P A PA + PA
Sbjct: 93 PLPTDLGAPAADPVDELVERPEVPWLEPYPDALLDPAAADPA 134
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
AP A AP PA APA A + A A PA A A
Sbjct: 80 GADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREA 126
Score = 30.8 bits (70), Expect = 1.9
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
EGA AP A AP PA A PA A + A A
Sbjct: 78 EEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLA 115
Score = 30.1 bits (68), Expect = 3.4
Identities = 31/116 (26%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
EG+ GA A AP A APP A AP + A A+
Sbjct: 62 EEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRR 121
Query: 405 PPAE---------GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
E G P + AA APAPA APA A R
Sbjct: 122 LAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEER 177
Score = 29.7 bits (67), Expect = 3.5
Identities = 14/41 (34%), Positives = 14/41 (34%)
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A PA E A A APA A A A PA
Sbjct: 78 EEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPA 118
Score = 29.7 bits (67), Expect = 4.4
Identities = 31/104 (29%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
+ +APA P E A A PA + PA A A G A A A
Sbjct: 78 EEGADAPAAAEAPPEPAA----AAPA--SAPATAASAAAGRVLASPAVRRLAREAGIDLS 131
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
GP EA + A AA APA A A A E
Sbjct: 132 KVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEE 175
Score = 28.5 bits (64), Expect = 9.0
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
EGA AP A AP PA APA + A A PA
Sbjct: 78 EEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPA 118
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.4 bits (71), Expect = 1.2
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA--PPAEAPPPAEGAPAAEGAPAPA 438
P PP + + + P +GP G PA++ P + + P
Sbjct: 485 GSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKP 544
Query: 439 EGAPAPPAEGAPRAE---GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
E A A R E G P + P + A P P + P AE
Sbjct: 545 EKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAE 603
>gnl|CDD|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein.
Length = 335
Score = 31.0 bits (71), Expect = 1.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 70 KKAAEE-LKREQERRALERKRVIDERCGEP----KDTDDMAEDEIGDLCQEYWQR 119
+A EE L+ E+++R ++R +P K D + +E YW+R
Sbjct: 281 DEAEEEKLRLEEKQRERRKEREEKGEEWKPRWFVKVKDPLTGEEDWVYKGGYWER 335
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 30.8 bits (70), Expect = 1.3
Identities = 26/106 (24%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
PA+ PP PP E E P P E P A P P P P + P P +
Sbjct: 55 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPK---PKPKPKPKPVK 111
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
P E P + PA + A P
Sbjct: 112 KVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVS 157
Score = 30.0 bits (68), Expect = 2.5
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 241 ETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
E P + PV E P PEP PEPP E P P P+
Sbjct: 59 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPK 102
Score = 28.9 bits (65), Expect = 5.2
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 205 PEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEP 264
PE V EPE P PEP PEP + + P+ + PV++V P+ E
Sbjct: 68 PEPVVEPE------PEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121
Query: 265 EPPVEEIPPTPPSPVTPNP 283
+P P P SP
Sbjct: 122 KPVE----PRPASPFENTA 136
Score = 28.9 bits (65), Expect = 6.3
Identities = 26/118 (22%), Positives = 34/118 (28%), Gaps = 1/118 (0%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
PA P + A P A PPP P P P P P P P
Sbjct: 42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKP-EPKPK 100
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P+ + E P + PA P + A A + P S +
Sbjct: 101 PKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSS 158
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
+ ++ PAA P AEG A P+ PA P + AP
Sbjct: 47 KKLEQSSDAKPAAASLPR-LAEGNFRTMPVQTVTATTPSGSRPAV--TATPEQKLLAPRP 103
Query: 447 EGAPRAEGAPPAEGAPAPP 465
E + P
Sbjct: 104 LFTAAREVKTVVPVSSVTP 122
>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
Length = 732
Score = 31.5 bits (71), Expect = 1.3
Identities = 14/86 (16%), Positives = 21/86 (24%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A AEG A P + P P + P + P + P +
Sbjct: 591 AREAEGRQMASLFEPDVPEVASGEDVTQAEQPQQPQQPQQPQQPQQPQQPVSPVINDKKS 650
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPP 457
+ G + P E
Sbjct: 651 DAGVNVPAGGIEQELKMKPEEEMEQQ 676
Score = 30.3 bits (68), Expect = 2.7
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
E EG + E E AE P + P P + P + P
Sbjct: 593 EAEGRQMASLFEPDVPEVASGEDVTQAE--QPQQPQQP---QQPQQPQQPQQPVSPVIND 647
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAE 420
++ PA G P E
Sbjct: 648 KKSDAGVNVPAGGIEQELKMKPEE 671
Score = 29.2 bits (65), Expect = 6.2
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
P E AE P + P P + + P ++ PA G
Sbjct: 605 PDVPEVASGEDVTQAEQPQQPQQ--PQQPQQPQQPQQPVSPV--INDKKSDAGVNVPAGG 660
Query: 477 AP---APPADAPPAEPAPP 492
+ + PP
Sbjct: 661 IEQELKMKPEEEMEQQLPP 679
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 31.3 bits (71), Expect = 1.4
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 114 QEYWQRI--YNLEAIK-YELDREIMLKDFEITELGKQVNDLRGKF--------VRPILKK 162
+E W ++ YN + + +L E T L + DL + V ILKK
Sbjct: 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248
Query: 163 VSKYENKFAKLQKKAAEFNFRSQLKAVKKRE--FSMEDAEKEKKP 205
+ +++NK K +++ F ++ + K E M D +KP
Sbjct: 249 ILEHDNKNNKAREELIRF-YKEKYKDHSLLEDYLKMSDIGNNRKP 292
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 31.0 bits (70), Expect = 1.5
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P PPA P PPA P A+PAP A A PA
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPA 185
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
P PP PA P PAP A A P P + P
Sbjct: 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAP 193
Score = 29.8 bits (67), Expect = 2.8
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
R + A P PAP P PP PA P A PA AP + PP ++P
Sbjct: 136 RKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPP 188
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.0 bits (70), Expect = 1.5
Identities = 48/230 (20%), Positives = 74/230 (32%), Gaps = 28/230 (12%)
Query: 60 RKKKL-RLLLRKKAAEELKREQERRALERKRV--IDERCGEPKDTDDMAEDEIGDLCQEY 116
RK K+ + +A + E E + E + ER E D D
Sbjct: 136 RKNKIKPFMKDTEAPARTQAEAETMSAEPTVATPLQERSVESADDVVNRADP------NI 189
Query: 117 WQRIYNLE--AIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQ 174
RI N E I EL +E + IT F R + ++ Y NK
Sbjct: 190 ITRIKNAEPKTIATELVQESNESEPVIT--------NEQDFDRLNIDQLVDYINKNND-- 239
Query: 175 KKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDAS 234
+FNF + R F+ ++ P PE + P P +T +
Sbjct: 240 ---GQFNFDAHDSVDDVRNFAKTVWRQKNTPAQTPMPE---RSWQTPAQTPARRISTPMT 293
Query: 235 DVEDGKETPLP-PEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
+ +TPL P + P P E + E P+ ++ P
Sbjct: 294 EEIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEELLRERFPSDLFAISSLP 343
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.0 bits (70), Expect = 1.5
Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 5/130 (3%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
A A A A P A+ A A A + A AA+ A
Sbjct: 192 AAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKK 251
Query: 437 PAEGAPAPPAEGAPRAEGAP-----PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+ A + A + A A A A+ A A ++
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKA 311
Query: 492 PAEAPPAESA 501
A+AP +
Sbjct: 312 TAKAPKRGAK 321
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 30.7 bits (70), Expect = 1.6
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 9 AETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLL 68
A+A AA AE E R K +E E+ R +E ++ M ER+K L
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEH--VKQLIEKMEAEREKLLAEQ- 263
Query: 69 RKKAAEELKREQERRALE 86
++ E +EQE E
Sbjct: 264 -ERMLEHKLQEQEELLKE 280
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 30.8 bits (70), Expect = 1.6
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
P A A P P P AP P AP A P A A AE
Sbjct: 129 QPPATTAQPQPVTP-PRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
Score = 30.0 bits (68), Expect = 2.5
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
PPA A P AP P AP AP A AP AE
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAP----VRTQPAAPVTQAVEAPKVEAEKE 180
Score = 30.0 bits (68), Expect = 2.9
Identities = 13/49 (26%), Positives = 15/49 (30%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
PPA A P PP + + P P A EAP
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177
Score = 29.2 bits (66), Expect = 4.5
Identities = 14/49 (28%), Positives = 15/49 (30%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
PPA A P A P PA AP +A A A
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177
Score = 28.5 bits (64), Expect = 8.2
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
PPA A P PP + P + PA AP + AP E E
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAP-VRTQPAAPVTQAVEAPKVEAEKEKE 182
Score = 28.1 bits (63), Expect = 9.2
Identities = 13/52 (25%), Positives = 14/52 (26%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
PPA A P P + P P A A E AE
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
>gnl|CDD|227676 COG5386, COG5386, Cell surface protein [Cell envelope biogenesis,
outer membrane].
Length = 352
Score = 30.6 bits (69), Expect = 1.7
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 19/139 (13%)
Query: 166 YENKFAKLQKKAAEFNFRSQLKAVK-KREFSMEDAEKEKKPEWVKEPESKKKRI---PIP 221
Y K AKL + ++ + + K F E +E V + + R +
Sbjct: 87 YFEKPAKLIVQNGKYTVQMTVNHSKWITGFKTEGNGQELDVTVVSKNTAADTRTVEFEV- 145
Query: 222 EPEPEPESATDASDVEDGK-------------ETPLPPEGEQPPVEEVPPPPEPEPEPPV 268
+P +A + + +T + + +P P
Sbjct: 146 SDLSKPLTAKIHVVIPELGINYDHEYTIRLEFDTAIDQAANAATPNDDKNVAQPGTTTPK 205
Query: 269 EEIPPTPPS-PVTPNPEEL 286
P T P+ P NP+
Sbjct: 206 TPTPQTTPNKPKVENPKTG 224
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 30.4 bits (69), Expect = 1.7
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 193 EFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPP 252
E ++ + KE ESKK + E + S+++ S V+ P E E+
Sbjct: 115 ENLNDEDTSSESSYGFKE-ESKKGSAETLKLEEKDSSSSEGSTVD----LEPPEEEEEEI 169
Query: 253 VEEVPPPPEPE 263
EE EPE
Sbjct: 170 AEEEEEVKEPE 180
>gnl|CDD|234185 TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812).
Length = 353
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
A+ + APA + P A A A AA G A E A
Sbjct: 246 FAADRPQDLQEAPAAAPDASEDGGHGPAAAPATSANPASAARGEIASREDA 296
Score = 30.8 bits (70), Expect = 1.8
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
A+ + AP A + PA + P + A E A +A
Sbjct: 246 FAADRPQDLQEAPAAAPDASEDGGHGPAAAPATSANPAS-AARGEIASREDA 296
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.6 bits (69), Expect = 1.7
Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
EE P E + + L+E + ++ R E +
Sbjct: 170 EEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAELVE 229
Query: 63 KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
+ L ++ + K ++ +ER ++ GE D++D + EY +RI
Sbjct: 230 MINWNLEERRRDLRKEQELEENVERDSDDEDEHGE--DSEDGETKPESYITSEYIERI-- 285
Query: 123 LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYEN 168
+KD ++ L + G+F I K K++N
Sbjct: 286 --------SEIRKMKDERLSSLASMMPQASGEFDGMIFTKKCKWDN 323
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 30.7 bits (70), Expect = 1.9
Identities = 13/40 (32%), Positives = 13/40 (32%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
A G P A A A AP A G A G P
Sbjct: 133 AAGGEPWGPSAAAADADPAKSAAPPAPTAPGWTGARGTPT 172
Score = 29.6 bits (67), Expect = 4.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
A G P A A+ P APPA AP GA P
Sbjct: 133 AAGGEPWGPSAAAADADPAKSAAPPAPTAPGWTGARGTPT 172
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 31.0 bits (70), Expect = 1.9
Identities = 34/109 (31%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
P + PP + G P G AP A A E P P A A AP+ A
Sbjct: 565 PELDDLPPVDRTVVPVGQPPLHGGRAPAEGVSRAAAPATAPEPPSPRILAVLALDAPSVA 624
Query: 439 EGAP--APPAEGAPRA------EGAPPAEGAPAPPAEGAPAPPAEGAPA 479
E AP A P G R E PP G A G A A A
Sbjct: 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAA 673
>gnl|CDD|185219 PRK15319, PRK15319, AIDA autotransporter-like protein ShdA;
Provisional.
Length = 2039
Score = 30.8 bits (69), Expect = 1.9
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 331 RQASHEETEGGEPKPE--GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
+ S ++ GG+ P G+ + PP +G PP +G + PP G A
Sbjct: 1666 KAQSDDDDSGGDDTPSDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVA 1724
>gnl|CDD|221263 pfam11847, DUF3367, Domain of unknown function (DUF3367). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 667 to 694 amino acids in length.
Length = 677
Score = 30.8 bits (70), Expect = 1.9
Identities = 22/104 (21%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAP----PAEGAPPAEGAPPAEGA---PPAEGAPPAE 394
+ + A P P G A+G G PA
Sbjct: 518 DAEGSRTPRPALVHRALTRSPGLTRVATFGPQVGPDDADGTLNDSGLRPRYPALEVYTVA 577
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
G A A A+G +G P E+ A G P PA
Sbjct: 578 GGGAPGLAYLVDADGTLVVDGGP--ESLLRLAAAGLLSGDPGPA 619
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 30.5 bits (70), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 287 WLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
+ LKDTV + P + +LV+ L A+ P
Sbjct: 162 EISLKDTVGLATPEEVAELVKALREALPDVP 192
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 30.8 bits (70), Expect = 2.0
Identities = 19/83 (22%), Positives = 22/83 (26%), Gaps = 8/83 (9%)
Query: 426 EGAPAAEGAPAPAEGAPAPPAEG-------APRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
G +EG +E A G PP A P A P EGA
Sbjct: 227 TGETMSEGLVT-SEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGAT 285
Query: 479 APPADAPPAEPAPPAEAPPAESA 501
A + P PA
Sbjct: 286 PAAAQIELSAGVLPNAISPATPV 308
Score = 30.5 bits (69), Expect = 2.3
Identities = 18/88 (20%), Positives = 25/88 (28%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
GE ++G +E E + AE AP + A P
Sbjct: 227 TGETMSEGLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATP 286
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
A + G P P PA+ G
Sbjct: 287 AAAQIELSAGVLPNAISPATPVRPASNG 314
Score = 28.9 bits (65), Expect = 7.3
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA-----EGAPPAEGAPPAEGAPP 386
Q EE G + E+ PP A PA + P P A + G P
Sbjct: 240 QDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATPAAAQIELSAGVLP 299
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPA 413
+P PA+ G A P
Sbjct: 300 NAISPATPVRPASNGVTPSQAPSAEPQ 326
>gnl|CDD|233947 TIGR02600, Verru_Chthon_A, Verru_Chthon cassette protein A. In
Verrucomicrobium spinosum and Chthoniobacter flavus, a
four-gene operon that includes proteins with an
N-terminal signal sequence for cleavage and methylation
recurs many times. Each operon is likely to encode a
membrane complex, the function of which is unknown. This
model represents a long protein from this putative
membrame complex, with members averaging about 1300
amino acids. The N-terminal region includes an apparent
signal sequence. The function is unknown. Most cassettes
are adjacent to an unusually large protein with both an
outer membrane autotransporter region and PEP-CTERM
putative protein-sorting motif [Cell envelope, Surface
structures].
Length = 1265
Score = 31.0 bits (70), Expect = 2.0
Identities = 28/129 (21%), Positives = 30/129 (23%), Gaps = 22/129 (17%)
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
GA A P AP A E G P E P
Sbjct: 97 VGAAFATALALESDVPATWDAPKALYTDLNEPVATLADNGTRG--HVPTDEPGMDTPAYP 154
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE--------------GAPAPPAE 475
A+ G G P A APP A +P P PA
Sbjct: 155 ASTG------GYPVKGAVKGTSGTVAPPGTDATSPRLPMPVRWLYVLQDGTLDVPDGPAG 208
Query: 476 GAPAPPADA 484
G A A
Sbjct: 209 GVAFFGALA 217
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 30.8 bits (69), Expect = 2.0
Identities = 34/140 (24%), Positives = 41/140 (29%), Gaps = 7/140 (5%)
Query: 367 PPAEGAPPAE--GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
PP PA P A A A A GA GP A P+ + P
Sbjct: 284 PPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVL---GPRAQSPATPSSSLPT 340
Query: 425 AEGAPAAEGAP--APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
G A + E P P A A G PP P+ A P
Sbjct: 341 DIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPT 400
Query: 483 DAPPAEPAPPAEAPPAESAP 502
+ P+ A P + E P
Sbjct: 401 EINPSFLASPRKKMKREKLP 420
Score = 30.0 bits (67), Expect = 3.0
Identities = 28/133 (21%), Positives = 36/133 (27%), Gaps = 7/133 (5%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P A+ + P + A + + A P A A G P PPP
Sbjct: 325 GPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPG 384
Query: 414 EGAPPAEAPP----PAEGAP---AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
P APP P E P A+ E P P++
Sbjct: 385 LAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSED 444
Query: 467 EGAPAPPAEGAPA 479
A E A A
Sbjct: 445 GKMLAIMGEAAAA 457
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 30.7 bits (70), Expect = 2.0
Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 342 EPKPEGEAPADGAPPAEGAPPA-----EG----APPAEGAPPAEGAPPAEGAPPAEGAPP 392
EP P+ EA A EG +EG ++ P A A PA A
Sbjct: 458 EPVPQAEAAQPAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAAAAA 517
Query: 393 AEGAPAAEGAPAPPA 407
A A A E AP A
Sbjct: 518 APAAAAGEPVTAPLA 532
Score = 29.1 bits (66), Expect = 5.6
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEG-------APAPPAEGAPAPPAEGAPAPPADAPPA 487
P P A P A+ P E + + + PA A AP A A A
Sbjct: 459 PVPQAEAAQPAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAAAAAA 518
Query: 488 EPAPPAEAPPA 498
A E A
Sbjct: 519 PAAAAGEPVTA 529
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/120 (16%), Positives = 28/120 (23%), Gaps = 9/120 (7%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
A + A +P + AP E A A AP + APA P
Sbjct: 358 LEAAPASDAA--SPLLQRAPRLEQELVLKANVSL-------AAAPAQSPQAPALSKNPEL 408
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+ A A+A + + P A P
Sbjct: 409 KAREQLATKIKKSEPAPESSEPSLAPVRSFWGELLDEVTAQKLKAEAKVLKDSDPVLAKP 468
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 30.2 bits (68), Expect = 2.1
Identities = 31/107 (28%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP--------PAE 394
PKP+G+ PA A P EG A + P
Sbjct: 45 PKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPA 104
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
G P A P P P GA PA+ P E P AE A AP A
Sbjct: 105 GVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQA 151
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.4 bits (68), Expect = 2.1
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 403 PAPPAEGPPP--------AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
P PP E P P + G AP P + A P PA + P+ +
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233
Query: 455 APPAEGAPAPPAEGAPAPPAEG 476
PA+ P +G
Sbjct: 234 VQPAQQPTPQNPAQQPPQTEQG 255
Score = 30.0 bits (67), Expect = 3.1
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 223 PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPP 276
P+P + + + P +QP + V P +P P+ P ++ P T
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254
>gnl|CDD|234700 PRK00249, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 222
Score = 29.8 bits (68), Expect = 2.2
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELW 287
P + V P P +P P+ LW
Sbjct: 14 PRLPLVGGAPAAAPVEAPTPLPNPAPNGSIFQAGSLW 50
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 30.5 bits (68), Expect = 2.3
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 25 KRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRA 84
K L+++ LE+KR E R E R + + ER ++ RL + + L+R++ R
Sbjct: 448 KALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDR- 506
Query: 85 LERKRV 90
LER+RV
Sbjct: 507 LERERV 512
Score = 29.3 bits (65), Expect = 6.1
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL---LRKKAAEELKRE 79
E K L+ + +ER E R R+E R ++ + ER ++ RL L + + L+RE
Sbjct: 451 EMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERE 510
Query: 80 QERRALERKRVIDER 94
+ R LER R+ R
Sbjct: 511 RVDR-LERDRLEKAR 524
>gnl|CDD|237158 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 30.8 bits (70), Expect = 2.3
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
G G A P + PA P P D EP PA P +
Sbjct: 910 GGYLRPGTDYAALDYDPRDQPLPATP-TVEPEEDGDTDWPEPVNPASDPSPVAN 962
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.4 bits (69), Expect = 2.3
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 21 EDEAKRLKLEELERKRAEVRR-RM----EEASGARRK----KGFMTPERKKKLRLLLRK- 70
E E K+L EE + +RAE+R+ R EEA R K K + +K+KL+ L++
Sbjct: 188 ELELKKLSPEEAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKEF 247
Query: 71 ---KAAEELKREQERRALERKRV 90
A+ +E LER+R
Sbjct: 248 EELVKADPEAALEELEKLERRRA 270
>gnl|CDD|135173 PRK04654, PRK04654, sec-independent translocase; Provisional.
Length = 214
Score = 29.8 bits (66), Expect = 2.4
Identities = 26/98 (26%), Positives = 30/98 (30%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
A+ + A+ A P A A P P A P P PA PA
Sbjct: 117 ADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPH 176
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
A P+ A AP G A P P E P
Sbjct: 177 AAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
Score = 29.0 bits (64), Expect = 5.5
Identities = 32/109 (29%), Positives = 38/109 (34%), Gaps = 3/109 (2%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
A P E A A A A A G A PA AP A+ P APAP +
Sbjct: 109 ATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPI---APAPHQTLVP 165
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P + A A APA P AP A P++ + P
Sbjct: 166 APHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding
a polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 30.0 bits (68), Expect = 2.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 31 ELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALE 86
+LE K AE R E + + KKG + RK + +K+ + + +ER+ L+
Sbjct: 2 DLEAKVAERLLRKEMSKIKQEKKGRII-LRKLSPAQVAKKREKLKREEREERQFLQ 56
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 30.3 bits (68), Expect = 2.4
Identities = 17/94 (18%), Positives = 20/94 (21%), Gaps = 5/94 (5%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
+ PPA + P PP P E + E P PA
Sbjct: 57 QSGIPPPAGTSNRLGLRQPTPITPPLRDWHPEEDQKNSTAFHQYQEERPRVRGTYLPAGG 116
Query: 422 PPPAEGAPAAEGA-----PAPAEGAPAPPAEGAP 450
P P G P E
Sbjct: 117 KSSPTVDPLLNIKSLISSIVPRIGDPVLNMENTF 150
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 29.8 bits (67), Expect = 2.5
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 435 PAPAEGAPAP-PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
+ P P P AP G P PP G PAPP PP P P P
Sbjct: 119 STTVQTTPLPQPPSTAPSYPGPQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQGPPP 176
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting
transactivator with ED-rich tail, are characterized by a
conserved 32-amino acid sequence at the C-terminus.
CITED proteins do not bind DNA directly and are thought
to function as transcriptional co-activators.
Length = 206
Score = 29.9 bits (67), Expect = 2.5
Identities = 20/108 (18%), Positives = 24/108 (22%), Gaps = 3/108 (2%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P G A G P + + P G P + P P+ P G
Sbjct: 47 HYPGGGMDASGRPRSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPF---MLVPGPQLMASM 103
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
PA P GA P P P
Sbjct: 104 QLQKLNTQYQGHAGAPAGHPGGGGPQQFRPGAGQPPGMQHMPAPALPP 151
Score = 28.3 bits (63), Expect = 8.7
Identities = 18/102 (17%), Positives = 24/102 (23%), Gaps = 4/102 (3%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
A G P + + P G + PA P P + + +G
Sbjct: 55 ASGRPRSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQG 114
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
PA GA PP PP
Sbjct: 115 HAGAPAGHPGGGGPQQFRPGAGQPP----GMQHMPAPALPPN 152
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 2.5
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 209 KEPESKKKRIPIPEPEPEPESATDAS-----------------DVEDGKETPLPPEGE-- 249
+E E + P+P P P P + D + DV D + P+PP E
Sbjct: 278 EEEECPVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGK 337
Query: 250 -QPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNP 299
P EE PP + P +PP PP+ + E +++ + NP
Sbjct: 338 DGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNP 388
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 30.2 bits (68), Expect = 2.6
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPP 259
+ EKKPE +P +IP EP S+ + K + E P
Sbjct: 33 QPEKKPE--IKPNENTPKIPKKPDNKEP------SENNNNKSNNENKDEENPS----STN 80
Query: 260 PEPEPEPPVEEIPPTPPSPVTPNPEE 285
PE +P+P + P P++
Sbjct: 81 PEKKPDPSKNKEEIEKPKDEPKKPDK 106
Score = 29.0 bits (65), Expect = 6.1
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKK---RIPIPEPEPEPESATDASDVEDGKETP 243
K+ E E E P+ K+P++K+ E + E +++ E +
Sbjct: 29 SNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPS 88
Query: 244 LPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEEL 286
E + P +E P +P+ +P ++ P+ V +
Sbjct: 89 KNKEEIEKPKDE---PKKPDKKPQADQ-----PNNVHADQPNN 123
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 30.6 bits (69), Expect = 2.6
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 6/76 (7%)
Query: 395 GAPAAEGAPAPPAEG------PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
G A PP E PP + P ++ +G
Sbjct: 1005 GGIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENGETPKG 1064
Query: 449 APRAEGAPPAEGAPAP 464
+ P +GA P
Sbjct: 1065 NEEKKEEQPDKGANLP 1080
Score = 30.2 bits (68), Expect = 3.3
Identities = 12/64 (18%), Positives = 14/64 (21%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
EAP PP E P A P + PP E
Sbjct: 1006 GIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENGETPKGN 1065
Query: 406 PAEG 409
+
Sbjct: 1066 EEKK 1069
Score = 30.2 bits (68), Expect = 3.6
Identities = 22/106 (20%), Positives = 26/106 (24%), Gaps = 7/106 (6%)
Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA 369
++A PL +VV R E E P PE E A P +
Sbjct: 987 LTAEGLKLDPLTAAVV-----RVGGIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVD 1041
Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
PP G P E P A P
Sbjct: 1042 PKDNKDPLTPPGSDD--ENGETPKGNEEKKEEQPDKGANLPNTGTK 1085
>gnl|CDD|219781 pfam08287, DASH_Spc19, Spc19. Spc19 is a component of the DASH
complex. The DASH complex associates with the spindle
pole body and is important for spindle and kinetochore
integrity during cell division.
Length = 150
Score = 29.2 bits (66), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 23 EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQER 82
E + +L E + + R + + S T E+ ++L+ L +KK E LK ER
Sbjct: 92 ELNKGRLSNSESRSTDSRLGLNKVSDDPVNMASSTEEKLERLKELKQKK--ERLKYSLER 149
>gnl|CDD|218882 pfam06074, DUF935, Protein of unknown function (DUF935). This
family consists of several bacterial proteins of unknown
function as well as the Bacteriophage Mu gp29 protein.
Length = 516
Score = 30.3 bits (69), Expect = 2.7
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 259 PPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQ 318
P E + P P ++ ++D ++ L + A
Sbjct: 403 PEPEIDEAVLGPPAPAPAPAPAAAFAGAEAAAASAAPPADQDALDAALDALAGELEAAAD 462
Query: 319 PLLKSVVKDTLRRQASHEE 337
PLL+ ++ D L+ S EE
Sbjct: 463 PLLEPLL-DALQAAESLEE 480
>gnl|CDD|217439 pfam03229, Alpha_GJ, Alphavirus glycoprotein J.
Length = 126
Score = 28.9 bits (64), Expect = 2.7
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
A A G GA A A GA AA G+ G PP + P E P
Sbjct: 20 TPKAALATGTTATVGAANATAVATATGA---NATSAAAGSTIAATAGAPPTDSTPAGETP 76
Query: 423 PP 424
P
Sbjct: 77 GP 78
Score = 28.9 bits (64), Expect = 3.1
Identities = 19/69 (27%), Positives = 22/69 (31%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
A A G A A A A A A G+ GAP + A P
Sbjct: 20 TPKAALATGTTATVGAANATAVATATGANATSAAAGSTIAATAGAPPTDSTPAGETPGPF 79
Query: 485 PPAEPAPPA 493
PP + A P
Sbjct: 80 PPTDFALPL 88
Score = 28.1 bits (62), Expect = 5.4
Identities = 16/54 (29%), Positives = 18/54 (33%)
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A A G GA A A + A A A APP + P E P
Sbjct: 23 AALATGTTATVGAANATAVATATGANATSAAAGSTIAATAGAPPTDSTPAGETP 76
Score = 27.8 bits (61), Expect = 6.1
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP-P 411
A A G GA A A GA A A GAP + PA GP P
Sbjct: 22 KAALATGTTATVGAANATAVATATGAN-ATSAAAGSTIAATAGAPPTDSTPAGETPGPFP 80
Query: 412 PAEGAPPA 419
P + A P
Sbjct: 81 PTDFALPL 88
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 30.2 bits (69), Expect = 2.8
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P PP A APA A AP A+ A P
Sbjct: 369 PPPP----IQVSA--APAAAAAAPAAKEEEKKPASPW 399
>gnl|CDD|237810 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.
Length = 209
Score = 29.6 bits (67), Expect = 2.8
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P P AE A AP PP
Sbjct: 7 DEPTGSATPVTGAEEAGGAGGAAAPRPPG 35
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 30.4 bits (69), Expect = 2.8
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAP-PAEGAPAPPADAPPAEPAPPAEAP 496
E PR A A+ A A A PA A+ +
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 30.2 bits (67), Expect = 2.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 226 EPESATDASDVEDGKETPLPPEGEQP-PVEEVPPPPE-PEPEPPVEEIPPTPPSPVTPNP 283
EP+ V+ P+ P+ P PV+ V P P P+P P + + P P PV P+P
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDP 617
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 30.4 bits (68), Expect = 3.0
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 404 APPAEGPPPAE----GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
A +GPP A G PPA A A G PAA A A AP ++ A R
Sbjct: 311 ATGPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQAAAAAAPTESSKSATR 362
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 30.0 bits (67), Expect = 3.1
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLE--ELERKRAEVRRRMEEASGARRKKGFMTPER 60
+ P + E A + +R+ E +L+R++ E + + A A+ K R
Sbjct: 273 DHLPGIMSSKIEELARGLRADIERVARENADLQRQKLEAEQAAQAAQEAKAKAEKEAQAR 332
Query: 61 KKKLR--------LLLRKKAAEELKREQERRALERKR 89
+ KL+ L L +KAA +R+ + LE K+
Sbjct: 333 EAKLQAECARQTQLALEEKAALRAERDNLAKELEAKK 369
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 822
Score = 30.3 bits (68), Expect = 3.1
Identities = 7/29 (24%), Positives = 7/29 (24%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
G PPA A P P
Sbjct: 793 GVPPAVSADLIPGASCPVDAQAPQQCESC 821
Score = 29.5 bits (66), Expect = 5.7
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
GA PPA A P + P + P +
Sbjct: 791 GAGVPPAVSADLIPGASCPVDAQAPQQCESCR 822
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 30.0 bits (68), Expect = 3.2
Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 16/92 (17%)
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE-GAPAPPADAP 485
A A P PA+G R P A + A P APAP A
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDW-DPVGLPVEAAQTDTLEALPDWLRAPAPAEPAL 945
Query: 486 P--------------AEPAPPAEAPPAESAPA 503
P A P + APA
Sbjct: 946 PRPLAPSGLGGAIDSALPGEAVRSSLGTQAPA 977
Score = 30.0 bits (68), Expect = 3.4
Identities = 20/91 (21%), Positives = 21/91 (23%), Gaps = 6/91 (6%)
Query: 395 GAPAAEGAPAPPAEGPPPAE----GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A A P P P A APAP P
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALPDWLRAPAPAEPALP 946
Query: 451 RAEGAPPAEGAP--APPAEGAPAPPAEGAPA 479
R GA A P E + APA
Sbjct: 947 RPLAPSGLGGAIDSALPGEAVRSSLGTQAPA 977
Score = 29.7 bits (67), Expect = 4.2
Identities = 17/91 (18%), Positives = 18/91 (19%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
A A P G P A P PAE A P
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALPDWLRAPAPAEPALP 946
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P G P A + A
Sbjct: 947 RPLAPSGLGGAIDSALPGEAVRSSLGTQAPA 977
Score = 29.3 bits (66), Expect = 6.5
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
A A P P A+ EA P APA
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQ-TDTLEALPDWLRAPA---PAE 942
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
PA P P+ + A P E + APA
Sbjct: 943 PALPRPLAPSGLGGAIDSALPGEAVRSSLGTQAPA 977
Score = 29.3 bits (66), Expect = 7.0
Identities = 18/87 (20%), Positives = 21/87 (24%), Gaps = 2/87 (2%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEG 395
EP P G P A P PAE A P
Sbjct: 890 IAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALPDWLRAPAPAEPALPRPL 949
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAP 422
AP+ G A + +AP
Sbjct: 950 APSGLGGAIDSALPGEAVRSSLGTQAP 976
Score = 28.9 bits (65), Expect = 7.5
Identities = 17/92 (18%), Positives = 19/92 (20%), Gaps = 2/92 (2%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
A A P G P A P PA A P
Sbjct: 887 AAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLP--VEAAQTDTLEALPDWLRAPAPAEPA 944
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
A G + A A + AP
Sbjct: 945 LPRPLAPSGLGGAIDSALPGEAVRSSLGTQAP 976
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 28.8 bits (65), Expect = 3.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 33 ERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALE 86
E+ + E ++ +++ + K M+ E K + L +K EEL+ E RR L+
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAK--MSAEEKAEYELEKLEKELEELEAELARRELK 71
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 30.2 bits (68), Expect = 3.3
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
A + PP A P P+ + ++ AP PA
Sbjct: 371 DNVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPA 414
Score = 29.8 bits (67), Expect = 4.4
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
AP AP P G P+ + + + PP P++
Sbjct: 371 DNVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPATDPSS 419
Score = 29.4 bits (66), Expect = 5.7
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G P AP P A +P + + + APP + P+
Sbjct: 372 NVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPATDPS 418
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 28.8 bits (65), Expect = 3.4
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 26 RLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRAL 85
+ +L L+++ R R+ EA K L L KK E E+ +R
Sbjct: 81 QQELALLQQEVEAKRERLLEAR-----------RELKALEKLKEKKQKEYRA-EEAKR-- 126
Query: 86 ERKRVIDE 93
E+K +DE
Sbjct: 127 EQKE-MDE 133
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 29.8 bits (66), Expect = 3.4
Identities = 38/155 (24%), Positives = 47/155 (30%), Gaps = 6/155 (3%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
E A AD A A A P + A A +P A G E +
Sbjct: 312 EARASADAKAGAHTHAAAMPAVPEQ-ADDAARSPATTPVAVIRAAHVEHGLDKGEPRASK 370
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAP-----APAEGAPAPPAEGAPRAEGAPPAEG 460
PAE P A PP +A +E P + + P AE A P
Sbjct: 371 PAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADKPDAA 430
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
A P P A A + A P A+A
Sbjct: 431 ARLPAETADRPPRARDASSSAEPDLAAAPVRVADA 465
Score = 29.8 bits (66), Expect = 4.3
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
+A+H E + +P PA+ A PP + + +E P + +
Sbjct: 353 RAAHVEHGLDKGEPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSS 412
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P AE A A+ P A P A P A+ A AP A+
Sbjct: 413 ----EPVAEKALDKTADKPDAAARLPAETADRPPRARDASSSAEPDLAAAPVRVADAG 466
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 30.1 bits (68), Expect = 3.5
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA--PPAEGAPAPPAEGAPA---------PP 481
GAPA A P + + P E A A A + +
Sbjct: 13 GAPAHAVSIPGVTTTTSTDSTTEPAPEPDIEQKKAAYAALADVLDNDTSRKELIDQLRTA 72
Query: 482 ADAPPAEPAPPAEAPPAE 499
A PPAEP P PP
Sbjct: 73 AATPPAEP-VPKIVPPTL 89
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 29.6 bits (67), Expect = 3.5
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRL--KLEELERKRAEVRRRMEEASGARRKKGFMTPER 60
E+ A A+ AE E + K EEL+++R + + +E + A R++ + R
Sbjct: 38 EKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQR-LLDEAR 96
Query: 61 KKKLRLLLRKKAAEELKREQERRALE-RKRVIDE 93
++ +R+K E L+REQ + E R+R E
Sbjct: 97 EEADE--IREKWQEALRREQAALSDELRRRTGAE 128
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and
secretion].
Length = 490
Score = 29.9 bits (67), Expect = 3.5
Identities = 22/137 (16%), Positives = 25/137 (18%), Gaps = 1/137 (0%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
G A G G GA A G A G A +
Sbjct: 278 LGNIGATNIGLAAAGTGNIGSGNAVDSGGSALVGAIGQTSQATANA-GSVNATGGAAAGS 336
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
+ AP GA GA G P G P
Sbjct: 337 GNLGVANSGSAAAPFGIAGANQAALGGANSGAGNFGLGNNPGGGLGGKPLGGTGNGGIGA 396
Query: 482 ADAPPAEPAPPAEAPPA 498
+ A
Sbjct: 397 SGIGNTGYGNSGIANAG 413
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 140 EITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDA 199
+ E + + + + + + + K + +++A + K KK + +
Sbjct: 61 SLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQ-ELWAK 119
Query: 200 EKEKKPEWVKEPESK 214
+K E +E K
Sbjct: 120 LAKKADEEYREQVEK 134
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.0 bits (67), Expect = 3.6
Identities = 21/70 (30%), Positives = 25/70 (35%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
+ + E GGE + EGE G +EG PAE EG E
Sbjct: 656 EGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEV 715
Query: 392 PAEGAPAAEG 401
EG AEG
Sbjct: 716 EHEGETEAEG 725
Score = 29.2 bits (65), Expect = 6.3
Identities = 35/145 (24%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
E G E + EA + + G EG +G +EG PAE EG E
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Query: 397 PAAEG----APAPPAEGPPPAEGAPP-AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
A A EG AEG E EG + AEG EG +
Sbjct: 703 EADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEG 476
A E A
Sbjct: 763 ETEHEGETEAEGKEDEDEGEIQAGE 787
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 29.0 bits (65), Expect = 3.7
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPA-----EGAPAPPAEGAPAPPAEGAPAPPADAPPAEP- 489
APA AP A A G PAPP A P A APPA P
Sbjct: 1 APAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPR 60
Query: 490 APPAEAPPAESAPA 503
A + P A A
Sbjct: 61 ATDGDRDPQPLADA 74
>gnl|CDD|238414 cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain.
Cre-like recombinases belong to the superfamily of DNA
breaking-rejoining enzymes, which share the same fold in
their catalytic domain and the overall reaction
mechanism. The bacteriophage P1 Cre recombinase
maintains the circular phage replicon in a monomeric
state by catalyzing a site-specific recombination
between two loxP sites. The catalytic core domain of
Cre recombinase is linked to a more divergent helical
N-terminal domain, which interacts primarily with the
DNA major groove proximal to the crossover region.
Length = 287
Score = 29.7 bits (67), Expect = 3.8
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 276 PSPVTPNPEELWL-YLKDTVSASNPVSIDDLVEKLMSAVS------ATPQPLLKSVVKDT 328
P P +P L+L L D+++ S + + +SA+S P P +V+
Sbjct: 25 PLPASPETVTLYLTDLADSLAPST-------ISRRLSALSQLHRRSGLPSPADSPLVRLV 77
Query: 329 LRRQASHEETEGGEPKP 345
LR E +
Sbjct: 78 LRGIRREEARPKRQALA 94
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii [Protein
fate, Protein and peptide secretion and trafficking].
Length = 762
Score = 30.0 bits (68), Expect = 3.9
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 148 VNDLRGKFVRPILKKVSKYENKFA-----KLQKKAAEFNFRSQLKA 188
+N+LR K +R IL K++ + K A +LQ K AE F+++L
Sbjct: 1 INNLRLKKLRKILNKINALKGKMATLSDEELQAKTAE--FKNRLVE 44
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.5 bits (66), Expect = 4.0
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 74 EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDRE 133
+ELK+E+ER E + + + DD + E+ +L QE +++ N E RE
Sbjct: 73 DELKKEEERLLDELEEL--------EKEDDDLDGELVEL-QEEKEQLENEELQYL---RE 120
Query: 134 IMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQK 175
L D +L + L ++ + S N+ KL+K
Sbjct: 121 YNLFDRNNLQLEDNLQSLELQY------EYSL--NQLDKLRK 154
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 29.3 bits (66), Expect = 4.1
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 242 TPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVS 301
P+ P E+P +E PPPP P P PP T + + T+ S P S
Sbjct: 170 FPISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKERKGQRSAAGKTLVLSKPKS 229
Query: 302 ID 303
+
Sbjct: 230 PE 231
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.8 bits (68), Expect = 4.3
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 14 EAAAASAEDEAKRL--KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
E E +A+ L+E E+ + E+ + E+ E + KL K+
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ-----------EEEDKLLEEAEKE 574
Query: 72 AAE---ELKREQER 82
A + E K+E +
Sbjct: 575 AQQAIKEAKKEADE 588
>gnl|CDD|116017 pfam07395, Mig-14, Mig-14. This family contains a number of
bacterial mig-14 proteins (approximately 270 residues
long). In Salmonella, mig-14 contributes to resistance
to antimicrobial peptides, although the mechanism is not
fully understood.
Length = 264
Score = 29.5 bits (66), Expect = 4.3
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 60 RKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQR 119
+K++L + +A E+ ++ R+ +E GE + + + E+ + E +QR
Sbjct: 94 QKEQLAMA---RAPEDFSKKFRYNQRREVRLFEEAGGEVRPVSEFSSAELASIYIELFQR 150
Query: 120 IYNLEAIKYE 129
+ A +
Sbjct: 151 RWGFPATGAD 160
>gnl|CDD|204415 pfam10212, TTKRSYEDQ, Predicted coiled-coil domain-containing
protein. This is the C-terminal 500 amino acids of a
family of proteins with a predicted coiled-coil domain
conserved from nematodes to humans. It carries a
characteristic TTKRSYEDQ sequence-motif. The function is
not known.
Length = 518
Score = 29.5 bits (66), Expect = 4.3
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 161 KKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPI 220
++V + K +KL+++ + +QL +K + + A+ EK + E + +
Sbjct: 309 QQVQQSLEKISKLEQEKEHWMLEAQLAKIKLEKENQRIADLEKGTLKGQLAEKLHENATL 368
Query: 221 PEPEPEPESATDASDVEDGKETPL------PPEGEQPPVE 254
+ +PE + S+ E K T L E E P E
Sbjct: 369 TQAHEQPEEFSSKSEREPTKSTSLIGMLTVTDETEAPDEE 408
>gnl|CDD|221827 pfam12881, NUT_N, NUT protein N terminus. This family includes the
NUT protein. The gene encoding for NUT protein (Nuclear
Testis protein) is found fused to BRD3 or BRD4 genes, in
some aggressive types of carcinoma, due to chromosomal
translocations. Proteins of the BRD family contain two
bromodomains that bind transcriptionally active
chromatin through associations with acetylated histones
H3 and H4. Such proteins are crucial for the regulation
of cell cycle progression. On the other hand, little is
known about NUT protein. NUT is known to have a Nuclear
Export Sequence (NES) as well as a Nuclear Localization
Signal (NLS), both located towards the C-terminal end of
the protein. A fused NUT-GFP protein showed either
cytoplasmic or nuclear localization, suggesting that it
is subject to nuclear/cytoplasmic shuttling. Consistent
with this possibility, treatment with leptomycin B an
inhibitor of CRM1-dependent nuclear export resulted in
re-distribution of NUT-GFP to the nucleus. Inspection of
NUT revealed a C-terminal sequence similar to known
nuclear export sequences (NES) which are often regulated
by phosphorylation.
Length = 328
Score = 29.5 bits (66), Expect = 4.4
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGA-PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
P EG PP A + PA P EG P P P A+ P
Sbjct: 110 APGTPCGGVEGPPPFVTASNVKTILPARAVGVSQPQEGTWILGLPLPPPPPPVAQLVPIV 169
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
+ P +GA EG P A P+P
Sbjct: 170 SLENAWPGPQGA-TGEGGPAAIQKPSPG 196
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 29.4 bits (67), Expect = 4.4
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 15 AAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAE 74
+ A + + L++ L + E++ ++ A + + K +KK +
Sbjct: 28 SLAQRKKSQKGELEVTNLNEQYKEMKEELKAA--------LLDKKELKAWHKAQKKKEKQ 79
Query: 75 ELKREQERRALERKR--VID 92
E K + + + R V+D
Sbjct: 80 EAKAAKAKS---KPRLFVLD 96
>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional.
Length = 230
Score = 29.3 bits (65), Expect = 4.5
Identities = 38/145 (26%), Positives = 43/145 (29%), Gaps = 2/145 (1%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
P + D P PP PPA+ P PP P EG AP A A
Sbjct: 42 PNPQEDPDKNPSPPPDPPLTPRPPAQ--PNGHNKPPVTKQPGGEGTEEDHQAPLAADADD 99
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P G A + P G P PP PP G +
Sbjct: 100 DPRPGKRSKADEHGPAPGRAALAPFKLDLDQDPLHGDPDPPPGATGGQGEEPPEGGEESQ 159
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEP 489
P G EG P P AP +P
Sbjct: 160 PPLGEGEGAVEGHPPPLPPAPEPKP 184
>gnl|CDD|221112 pfam11445, DUF2894, Protein of unknown function (DUF2894). This is
a bacterial family of uncharacterized proteins.
Length = 193
Score = 28.9 bits (65), Expect = 4.5
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP-PAEGAPAPPAEGAPAPPADAPP 486
A AA A A A A PA A A A A P APA PPA +P
Sbjct: 54 ARAASAADACAAAGAASPAAPARGPLAALLAYIASRERPTAAAPADRRAAPSEPPASSPA 113
Query: 487 AEPAPPAE 494
A P
Sbjct: 114 ALPPELPL 121
>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 281
Score = 29.4 bits (66), Expect = 4.6
Identities = 22/78 (28%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P PA A A AP P E P + A PA G A GA
Sbjct: 82 PYRPQRPAYDAAQASVAPDNYVTLPRAPEAQPASAADIPAAGDAIGGAGGPLAAGA-RAV 140
Query: 446 AEGAPRAEGAPPAEGAPA 463
P + A GA A
Sbjct: 141 HNADPSFDPARFLNGARA 158
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.3 bits (66), Expect = 4.6
Identities = 15/61 (24%), Positives = 21/61 (34%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
E A E+ + ASAE A + + + A R R EA PE+
Sbjct: 226 LEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKML 285
Query: 63 K 63
Sbjct: 286 I 286
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 29.4 bits (66), Expect = 4.6
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+ P P+E AP A P + +P P+ AP E R +P A
Sbjct: 95 SPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLA 146
Score = 29.4 bits (66), Expect = 4.8
Identities = 29/135 (21%), Positives = 40/135 (29%), Gaps = 10/135 (7%)
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
E D A + A PA P+E AP A + P + +P P +
Sbjct: 76 EEKEDVADAFKNYKLESSASPAP--------KPSEIAPTAPPSAPKPSPAPQKQSPEPSS 127
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA--EGAPPAEGAPAPP 465
P + + P A E + A + P + E P A A
Sbjct: 128 PAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANQ 187
Query: 466 AEGAPAPPAEGAPAP 480
A P A AP
Sbjct: 188 QAAATTPATYPAAAP 202
Score = 28.6 bits (64), Expect = 7.7
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A AP P APP+ P+P EP+ PA ES
Sbjct: 90 LESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKES 136
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 29.4 bits (66), Expect = 4.7
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 137 KDFEITELGKQVNDLRGKFVRPILKKVSKYE--NKFAKLQKKAAEFNFRSQLKAVKKR-- 192
++ +I ++ Q+ GK + ILK E K +K+ E ++K++KK
Sbjct: 384 EELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFP 443
Query: 193 EFSMEDAEKEKKPEWVKEPESKK 215
E+ +KEK+ E + +K
Sbjct: 444 FIEFEEVKKEKEKEKERPEFVEK 466
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.4 bits (64), Expect = 4.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 49 ARRKKGFMTPERKKKL-RLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED 107
RRKK + K++ R+ RK+ EE K+E E++ ERK + E D +D +
Sbjct: 33 QRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETE 92
Query: 108 EIGDLCQEYWQRIYNLEAIKYE 129
+ D+ + W+ YE
Sbjct: 93 DTEDVEDDEWEGFPEPTVTDYE 114
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 28.7 bits (64), Expect = 4.9
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
G P +G + P + A + A + PAP P PA
Sbjct: 112 GGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPA 160
>gnl|CDD|187655 cd08952, KR_1_SDR_x, ketoreductase (KR), subgroup 1, complex (x)
SDRs. Ketoreductase, a module of the multidomain
polyketide synthase (PKS), has 2 subdomains, each
corresponding to a SDR family monomer. The C-terminal
subdomain catalyzes the NADPH-dependent reduction of the
beta-carbonyl of a polyketide to a hydroxyl group, a
step in the biosynthesis of polyketides, such as
erythromycin. The N-terminal subdomain, an interdomain
linker, is a truncated Rossmann fold which acts to
stabilizes the catalytic subdomain. Unlike typical SDRs,
the isolated domain does not oligomerize but is composed
of 2 subdomains, each resembling an SDR monomer. The
active site resembles that of typical SDRs, except that
the usual positions of the catalytic Asn and Tyr are
swapped, so that the canonical YXXXK motif changes to
YXXXN. Modular PKSs are multifunctional structures in
which the makeup recapitulates that found in (and may
have evolved from) FAS. Polyketide synthesis also
proceeds via the addition of 2-carbon units as in fatty
acid synthesis. The complex SDR NADP-binding motif,
GGXGXXG, is often present, but is not strictly conserved
in each instance of the module. This subfamily includes
KR domains found in many multidomain PKSs, including six
of seven Sorangium cellulosum PKSs (encoded by
spiDEFGHIJ) which participate in the synthesis of the
polyketide scaffold of the cytotoxic spiroketal
polyketide spirangien. These seven PKSs have either a
single PKS module (SpiF), two PKR modules
(SpiD,-E,-I,-J), or three PKS modules (SpiG,-H). This
subfamily includes the single KR domain of SpiF, the
first KR domains of SpiE,-G,H,-I,and #J, the third KR
domain of SpiG, and the second KR domain of SpiH. The
second KR domains of SpiE,-G, I, and #J, and the KR
domains of SpiD, belong to a different KR_FAS_SDR
subfamily. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
prostaglandin dehydrogenase (PGDH) numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107,
PGDH numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type KRs have
a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 480
Score = 29.4 bits (67), Expect = 5.0
Identities = 20/91 (21%), Positives = 22/91 (24%), Gaps = 6/91 (6%)
Query: 406 PAEGPPPAEG-----APPAEAPPPAEGAPAA-EGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
P G P A A A A A+ A A A
Sbjct: 24 PDPPAARLTGTWLVVVPAGADDALAAAVARALAAAGAEVVVLEVDAADADAAAAAALAAA 83
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A P A + P P A PA A
Sbjct: 84 AAGGPVAGVLSLLALDERPHPDHPAVPAGLA 114
>gnl|CDD|234519 TIGR04244, nitrous_NosZ_RR, nitrous-oxide reductase, TAT-dependent.
Members of this family are the nitrous-oxide reductase
structural protein, NosZ, with an N-terminal
twin-arginine translocation (TAT) signal sequence (see
TIGR01409). The TAT system replaces the Sec system for
export of proteins with bound cofactor.
Length = 627
Score = 29.3 bits (66), Expect = 5.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
GA A A GA A A A A A P E
Sbjct: 16 LAGAGAAGAAGAAAAAAAAAAAAAAGKYHVAPGE 49
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 29.3 bits (65), Expect = 5.4
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 412 PAEGAPP-----AEAPPPAEGAPAAEGAPAPAEGAPAPPAEG-APRAEGAPPAEGAPAPP 465
P +G P A P P A + + P+ AP +PPA +PP
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPST--SPPAGHLGSPP 608
Query: 466 AEGAPAPPAEGAPAPPAD---APPAEPAPPAEAPPAESAPA 503
A P+ + +PPA +P P+ P + S
Sbjct: 609 A--TPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTET 647
>gnl|CDD|236234 PRK08312, PRK08312, putative indolepyruvate oxidoreductase subunit
B; Reviewed.
Length = 510
Score = 29.2 bits (66), Expect = 5.4
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A G AA+ A P PPPA AP A P P A A
Sbjct: 206 AAGFAAAQQGGAAP---PPPAAAAPTAPRPRPPALAARA 241
>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 27.4 bits (61), Expect = 5.5
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
++ A A AP P P A E+ PA
Sbjct: 48 SDNKAEASAAAAQAPYQVATPTPVQSQRVDPAAAS-GQDSTEARPA 92
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 28.7 bits (65), Expect = 5.5
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 21 EDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQ 80
E E + E++ER+R E+ + E A ++K L+ LL ++ E L E
Sbjct: 108 ESEVLEQRFEKVERERDELYDKFEAA--------IQDVQQKTGLKNLLLEQKLEALNEEL 159
Query: 81 ERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNL 123
E++ + V+ +++ D+ +E Q I +L
Sbjct: 160 EKKEAQLNEVL-AAANLDPAALQAVSEKLDDVLEEKNQLIKDL 201
>gnl|CDD|115333 pfam06670, Etmic-2, Microneme protein Etmic-2. This family
consists of several Microneme protein Etmic-2 sequences
from Eimeria tenella. Etmic-2 is a 50 kDa acidic
protein, which is found within the microneme organelles
of Eimeria tenella sporozoites and merozoites.
Length = 379
Score = 29.1 bits (64), Expect = 5.5
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 294 VSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADG 353
++ N +S+D+ ++ + + + + + S+V D R+ E+EG G PA
Sbjct: 76 LTVRNGLSVDETIKVTSAGWTKSERDFIVSLVADETRKVVQLRESEGAS-GASGPGPAPA 134
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
P G AE AP EG P G E AP +
Sbjct: 135 EKPPSGQGSAEEAPKGEGGQEKPSVPLIAVRIHGSGGDKGESAPQS 180
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 28.0 bits (63), Expect = 5.5
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 27 LKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR-EQERRA- 84
+ L++ K + R +E R++ G KK R+ LR + +R E+E+R
Sbjct: 62 IDLKKHNAKVEKELLREKEKKKKRKRPG-------KKRRIALRLRRERTKERAEKEKRTR 114
Query: 85 LERKRVIDERCGE 97
R++ R E
Sbjct: 115 KNREKKFKRRQKE 127
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 29.2 bits (66), Expect = 5.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 474 AEGAPAPPADAPPAEPAPPAEAPP 497
EG P D P A A PA P
Sbjct: 237 LEGVQLPEPDEPSARHALPANEPR 260
>gnl|CDD|221404 pfam12067, Sox_C_TAD, Sox C-terminal transactivation domain. This
domain is found at the C-terminus of the Sox family of
transcription factors. It is found associated with
pfam00505. It binds to the Armadillo repeats (pfam00514)
in Catenin beta-1 (CTNNB1), which is involved in
transcriptional regulation. It functions as a
transactivating domain (TAD).
Length = 197
Score = 28.5 bits (64), Expect = 5.7
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 1/91 (1%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA-EG 460
+P + G + AP A PA P G
Sbjct: 41 SPPCQEDCQMMPYGYNSSYAPQNAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMYYG 100
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
P P G +PP ++ +
Sbjct: 101 QMYVPECAKHHPVQLGQLSPPPESQHLDTLD 131
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 28.7 bits (65), Expect = 5.7
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 171 AKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPE-PEPEPES 229
AK+Q + AE + KKRE + E + ++ K +KKR P + PEP+
Sbjct: 108 AKVQAQRAE-------QQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Query: 230 ATDASDVEDGKE 241
+D S++ G+
Sbjct: 161 VSDISELTVGQA 172
>gnl|CDD|216989 pfam02354, Latrophilin, Latrophilin Cytoplasmic C-terminal region.
This family consists of the cytoplasmic C-terminal
region in latrophilin. Latrophilin is a synaptic Ca2+
independent alpha- latrotoxin (LTX) receptor and is a
novel member of the secretin family of G-protein coupled
receptors that are involved in secretion. Latrophilin
mRNA is present only in neuronal tissue. Lactrophillin
interacts with G-alpha O.
Length = 366
Score = 29.2 bits (65), Expect = 5.7
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPV 300
P + + P P P E +PP PP+ E++ + A N +
Sbjct: 282 PNLRDSPTYPSSSPSTQTEALPPPPPAK--CGDAEIYYKSMPNLGARNQL 329
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 28.7 bits (65), Expect = 5.8
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
G + + A AP A A A GA A A A APPA
Sbjct: 6 GGSDSAASEAAAAPAAAAAAAADAGAGAEAPAAAAPPAAD 45
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 29.1 bits (65), Expect = 5.9
Identities = 11/55 (20%), Positives = 15/55 (27%)
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
+ PAE + P PA PA+ P G P +
Sbjct: 253 DSVKTPAEHQAQTPSGVPTVSGPARPAQTGKPAPVLGPLGDGCTGSGCGNEPYHD 307
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.4 bits (67), Expect = 6.0
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 33/130 (25%)
Query: 13 AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
AEA AE+EAKR+ LEE +K AE KK LL K+
Sbjct: 29 AEAKIKEAEEEAKRI-LEE-AKKEAEA---------------------IKKEALLEAKEE 65
Query: 73 AEELKREQERRALER--------KRVID--ERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
+L+ E E+ ER KR++ E + + E+E+ +E Q+
Sbjct: 66 IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125
Query: 123 LEAIKYELDR 132
LE + EL+
Sbjct: 126 LEKKEEELEE 135
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.4 bits (66), Expect = 6.0
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 14 EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
E A E+ + E LER+ +R R+E G+ + ER + L+ AA
Sbjct: 291 ELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA 350
Query: 74 EELK--REQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQE 115
+ + RE E R E +R +DE G D + L +
Sbjct: 351 DARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARA 394
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 59 ERKKKLRLLLRKKAAEELKREQERRALERKRVIDERC 95
R KKL +K +E+L+++ +R+ KR E+
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKG 61
>gnl|CDD|220494 pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 120
Score = 27.7 bits (62), Expect = 6.2
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 22 DEAKRL------KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEE 75
+EA L LEE+ +AE+ S R K
Sbjct: 6 EEANELLPELRRLLEEVREAKAELEELEAALSEGERSLEARG------------LKEELR 53
Query: 76 LKREQERRALERKRVIDERCGEPKDTD 102
EQ R A+ I+E E KD D
Sbjct: 54 ELEEQIRAAIAE---IEELGIEVKDLD 77
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 29.3 bits (66), Expect = 6.5
Identities = 10/77 (12%), Positives = 16/77 (20%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
A A P A + + G+ A EG
Sbjct: 1291 AFAPASATPGAPESVGTTAVSTASSASSATVTGSDAGSGADSTGPSLGAAGSVTGAGEGY 1350
Query: 429 PAAEGAPAPAEGAPAPP 445
+ A + +E
Sbjct: 1351 EMTKEAVSGSESTGMSF 1367
>gnl|CDD|225463 COG2911, COG2911, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1278
Score = 29.2 bits (66), Expect = 6.5
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 24/143 (16%)
Query: 255 EVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVS 314
V PP P+ EP + P P++ + + L D + ++I L +S
Sbjct: 116 AVLRPPTPDKEPSGPSSRISTPLPISLDLDAL-----DVIR----ITIGKTTVGLEDFLS 166
Query: 315 A-----TPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPA-EGAPPAEGAPP 368
A L + PK A P A A+ P
Sbjct: 167 AASLNNEAALGLHPTSLNAALVDL---------PKLNAAADVALVRPKALRALDAKAKEP 217
Query: 369 AEGAPPAEGAPPAEGAPPAEGAP 391
GA + + P P
Sbjct: 218 GGGAIASLLSLPLLTPLVDIRLP 240
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family.
Length = 850
Score = 28.9 bits (65), Expect = 6.8
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
E PA P PPP E PP PPP E P E A+ P
Sbjct: 630 EDEPADP-RPPPPVETEPPPRPPPPPETDREEM-RRLPPEEKAKIAAQVQP 678
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 28.8 bits (64), Expect = 6.9
Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
P +G P P A E A A A GA P AP
Sbjct: 354 PEEPRMDGLCVFPTPAEPAALFVDGNEVIAAGAAAAMIAAAERAANGARGSPMA-APEEG 412
Query: 454 GAPPAEGAPAPPA----EGAPAPPAEGAPAPPADAPPAE 488
A A A PA E + P PA A A+
Sbjct: 413 RAAAAAAAANAPADQDVEAEAHDEFDQDPGAPAHADRAD 451
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 29.3 bits (65), Expect = 6.9
Identities = 32/138 (23%), Positives = 40/138 (28%), Gaps = 2/138 (1%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
P G P P P + + G+ P P P P A+
Sbjct: 411 PTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPVAQL 470
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP-P 486
P P + P +G P P G P E + + A AP P P
Sbjct: 471 PPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMP 530
Query: 487 AEPAP-PAEAPPAESAPA 503
EP P P A PA
Sbjct: 531 VEPVPVPTVALERPVCPA 548
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.2 bits (65), Expect = 7.1
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 106 EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL---RGKFVRPILKK 162
++EI L Q E EL+ M K F+ T+ +Q+NDL + VR
Sbjct: 268 DNEIKALKSRKKQM----EKDNSELE-LKMEKVFQGTD--EQLNDLYHNHQRTVR----- 315
Query: 163 VSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKE 210
+ E + Q++ + N +L +K E +E + + + +E
Sbjct: 316 --EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE 361
>gnl|CDD|218950 pfam06236, MelC1, Tyrosinase co-factor MelC1. This family consists
of several tyrosinase co-factor MELC1 proteins from a
number of Streptomyces species. The melanin operon
(melC) of Streptomyces antibioticus contains two genes,
melC1 and melC2 (apotyrosinase). It is thought that
MelC1 forms a transient binary complex with the
downstream apotyrosinase MelC2 to facilitate the
incorporation of copper ion and the secretion of
tyrosinase indicating that MelC1 is a chaperone for the
apotyrosinase MelC2.
Length = 124
Score = 27.5 bits (61), Expect = 7.1
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
GA A A A A G A A A A P + A A
Sbjct: 2 GAAAALAAAAGLAAGGEAAAAPDAAAHPGPSTGRGAPGGAPA 43
>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
Length = 587
Score = 29.0 bits (65), Expect = 7.2
Identities = 13/70 (18%), Positives = 16/70 (22%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+ + A A E A A PPA A A+ P
Sbjct: 10 CTLSSTLLRSTSARRVSAVRAVEREVAAAATVSPPATAAVDADRLEPRVEERDGYWVLKE 69
Query: 438 AEGAPAPPAE 447
P E
Sbjct: 70 EFRKGINPQE 79
>gnl|CDD|165528 PHA03270, PHA03270, envelope glycoprotein C; Provisional.
Length = 466
Score = 28.7 bits (64), Expect = 7.2
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
GAPR + +E + A P P P PA P ++ P +S P
Sbjct: 19 LCAGAGAPRGAVSNASEAPTSGSPGSAEGPRTTPTPT-RGKGTPTGPASPPKSGPPKSPP 77
Query: 503 A 503
A
Sbjct: 78 A 78
>gnl|CDD|147144 pfam04834, Adeno_E3_14_5, Early E3 14.5 kDa protein. The E3B 14.5
kDa was first identified in Human adenovirus type 5. It
is an integral membrane protein oriented with its C
terminus in the cytoplasm. It functions to down-regulate
the epidermal growth factor receptor and prevent tumour
necrosis factor cytolysis. It achieves this through the
interaction with E3 10.4 kDa protein.
Length = 97
Score = 27.0 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 243 PLPPEGEQPPVEEVPPPPEPEPEPP 267
P P+ + P+++ PPPPEP+P P
Sbjct: 60 PRYPDPQHIPLQQPPPPPEPQPRAP 84
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 28.6 bits (64), Expect = 7.3
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P G P A + AE A A+G P + EG P E
Sbjct: 8 PDNPGDPENTDPEATSADRAEAAAEEAALAQGVP-EDDPFGDAVEGEIDPDLEADLEDLL 66
Query: 483 DAPPAEPAPPAEAPPAES 500
D E A EA E+
Sbjct: 67 DDVDPELADDGEASTVEA 84
>gnl|CDD|221170 pfam11696, DUF3292, Protein of unknown function (DUF3292). This
eukaryotic family of proteins has no known function.
Length = 641
Score = 29.0 bits (65), Expect = 7.3
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAE---GAPAPPAE--GAPAPPADAPPAEPAPP 492
A AP PP P + A +PA A E A AP +AP AE
Sbjct: 400 ANAAPLPP----PPSSSLRKAPSSPASIDHKQLNLGASEEEIDQAAAPEPEAPVAEAEEK 455
Query: 493 AEAP 496
AE P
Sbjct: 456 AEPP 459
Score = 28.6 bits (64), Expect = 9.1
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE-----APPAESAPA 503
A AP PP + A +PA A E AP E+ A
Sbjct: 400 ANAAPLPPPPSSSLRKAPSSPASIDHKQLNLGASEEEIDQAAAPEPEAPVA 450
>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein;
Provisional.
Length = 177
Score = 28.3 bits (63), Expect = 7.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
+G APA G +G G P + GA + P + APA P++ PP
Sbjct: 117 QGGGAPAGGNIGGQQQGG---WGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPP 168
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 28.6 bits (63), Expect = 7.5
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
P PP + + + + PP P A A+ PAE R P
Sbjct: 247 PPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLR----------P 296
Query: 463 APPAEGAPAPPAEGAPAPPADAPPAE----------PAPPAEAPPA 498
PP+ A PP PP+ P PP+ PP+
Sbjct: 297 LPPSADDNIKECPLALKPPPPLPPSVDDNLKECLLAPLPPSALPPS 342
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 28.6 bits (64), Expect = 7.5
Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
E E K + +S VE E P E + P P E +P
Sbjct: 97 ELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPE 156
Query: 268 VEEIPPT-PPSPVTPNPEE 285
E P P PE
Sbjct: 157 EETEIEVDEPEEPKPEPEL 175
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 28.6 bits (64), Expect = 7.8
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 242 TPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEEL 286
PP+ + ++ P+P+P +E+ + E +
Sbjct: 373 ESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAASPQTKKETI 417
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.1 bits (63), Expect = 7.9
Identities = 22/92 (23%), Positives = 23/92 (25%), Gaps = 2/92 (2%)
Query: 360 APPAEGAPPAEGAPPAE-GAPPAEGAPPAEGAPPAEGAPAAEGAPAPP-AEGPPPAEGAP 417
P EGA E EG G EG A
Sbjct: 14 VPEEEGAEEVEPEGSGRDLPETGEGEEEEVGVDAFGLDMKKEGGGYGHDASPGLGDMSEV 73
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
E PP EGAPA + P E A
Sbjct: 74 EPEEPPTPEGAPAEKRELKEEGEEPKSEPEKA 105
>gnl|CDD|139048 PRK12538, PRK12538, RNA polymerase sigma factor; Provisional.
Length = 233
Score = 28.3 bits (63), Expect = 7.9
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
APA A A P+ A A P PP
Sbjct: 9 APAEAAPATTAPSPIVAEAPDAASVSIVPDPP 40
>gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4.
The C-terminal domain of the transcription elongation
factor protein Spt5 is necessary for binding to Spt4 to
form the functional complex that regulates early
transcription elongation by RNA polymerase II. The
complex may be involved in pre-mRNA processing through
its association with mRNA capping enzymes. This CTD
domain carries a regular nonapeptide repeat that can be
present in up to 18 copies, as in S. pombe. The repeat
has a characteristic TPA motif.
Length = 121
Score = 27.5 bits (61), Expect = 8.0
Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA--PAEGAPAP-----PAEGAPRAEGA 455
PA + P A G P PA GA + PA G P PA G A G
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRTPAWGGASAWGN 74
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+EG+ + A G P PA P A SA
Sbjct: 75 KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 28.6 bits (64), Expect = 8.0
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 11 TPAEAAAASAEDEAKRLK-----LEELERKRAEVRRRMEEASGARRKKGFMTPER----- 60
T E + S DE L LEE ERK E +++ EA+ + R + +R
Sbjct: 20 TADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGD 79
Query: 61 KKKLRLLLRKKAAEELKREQE--RRALERKRVIDE 93
K++ RL R + +++Q +A+ K +
Sbjct: 80 KQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGS 114
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.9 bits (65), Expect = 8.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 233 ASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
A DV + E LP + P E+ E + E EE P P P
Sbjct: 294 AEDVREAAELVLPHRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKP 339
Score = 28.5 bits (64), Expect = 9.9
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 202 EKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPE 261
E+ ++ +K P P+PE E DA + E+ P + +
Sbjct: 315 EQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEP--DPQEEAD 372
Query: 262 PEPE 265
+
Sbjct: 373 GQGS 376
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2). DAZ
associated protein 2 has a highly conserved sequence
throughout evolution including a conserved polyproline
region and several SH2/SH3 binding sites. It occurs as a
single copy gene with a four-exon organisation and is
located on chromosome 12. It encodes a ubiquitously
expressed protein and binds to DAZ and DAZL1 through DAZ
repeats.
Length = 136
Score = 27.5 bits (61), Expect = 8.2
Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEA--PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
AP A P+ PP P A A P P+ P A+ + + P A P
Sbjct: 4 APPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMA-YYPIGA 62
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P +G A P + PP P A
Sbjct: 63 PPPVYPPGSTVLVQGGFDAGARFGPGTGSSIPPPPPGCAPNA 104
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 27.0 bits (60), Expect = 8.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 480 PPADAPPAEPAPPAEAPPAESAPA 503
P A PP PAPPA APP + P
Sbjct: 1 PAAPVPPPAPAPPAPAPPPAAPPV 24
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 28.6 bits (63), Expect = 8.4
Identities = 16/51 (31%), Positives = 16/51 (31%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
A P P GA APAP AP A PA P P
Sbjct: 91 AQLPAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPDAVQP 141
>gnl|CDD|235709 PRK06132, PRK06132, hypothetical protein; Provisional.
Length = 359
Score = 28.5 bits (64), Expect = 8.6
Identities = 16/57 (28%), Positives = 18/57 (31%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+ E AP A A A PA + A APA A A P P
Sbjct: 170 SDGEVAPVEVAHPLLLAPKAAPAPAPASDAAANGRPAAPAPAPAEAAWADADAPTGP 226
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 28.9 bits (65), Expect = 8.8
Identities = 9/43 (20%), Positives = 10/43 (23%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
A A A AE A A P + A
Sbjct: 556 WGARAREAAREKRAAAPKKTAKPRRSKAEARAEAAALNPEQRA 598
>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional.
Length = 336
Score = 28.5 bits (64), Expect = 8.8
Identities = 12/50 (24%), Positives = 14/50 (28%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
+ A A A A + A PA A PA G P
Sbjct: 24 PGDPANSSAGAASAAAAAAAAALSAAAAPAAADAAVAALPASLAGTSVPG 73
>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 402
Score = 28.6 bits (64), Expect = 8.9
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 35 KRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDER 94
RA + R + R + + K++ RL R + + R ++ E
Sbjct: 241 SRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLRYERLSPILGEL 300
>gnl|CDD|221084 pfam11336, DUF3138, Protein of unknown function (DUF3138). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 514
Score = 28.7 bits (64), Expect = 8.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 8 AAETPAEAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGA 49
A P AAAAS + K L+ L L+++ E+R + A
Sbjct: 11 AGALPGAAAAASDASQIKALQAQLTALQQQVNELRAALAAKPAA 54
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 28.8 bits (64), Expect = 9.1
Identities = 19/91 (20%), Positives = 22/91 (24%), Gaps = 3/91 (3%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
A E EG P E+ + E P PA GA E A
Sbjct: 470 AAGEEAREGRRRGPRRESKSQEPSGGESPNPEL---PANNNNSNSNNNNNNGADRKEAAA 526
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
A P +E E P
Sbjct: 527 TTGNATTTSNGSGTSVPLPVSSEPPQHKEGP 557
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 9.1
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 3 EETPAAAETPAEAAAASAEDEAKRL---KLEELERKRAEVRRRMEEASGARRKKGFMTPE 59
+ A+ + A S+ E K++ + E+E+ + E+++ EEA A+ K F +
Sbjct: 251 RQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Query: 60 RKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED 107
K K E ++++E A + ++ + +P ++ A D
Sbjct: 311 ESKASEKEAEDKELEA-QKKREPVAEDLQKTKPQVEAQPTSLNEDAID 357
Score = 28.4 bits (63), Expect = 9.4
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 3 EETPAAAETPAEAAAASAEDEAK-----RLKLEELERKRAEVRRRMEEASGARRKKGFMT 57
+E A+ E D K + +++R EVR++ +EA + +
Sbjct: 209 QEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSS 268
Query: 58 PERKKKLRLLLR----------KKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED 107
P+ K++ + KK EE + ++ +A + K+ E K ++ AED
Sbjct: 269 PKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQ-------ESKASEKEAED 321
Query: 108 E 108
+
Sbjct: 322 K 322
>gnl|CDD|173156 PRK14693, PRK14693, hypothetical protein; Provisional.
Length = 552
Score = 28.6 bits (63), Expect = 9.5
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPA--EGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
A P+ P A+ P A+GAP PA + P P PA+A A +A+G A
Sbjct: 45 AAAGAPSFAPPAADAFPQADGAPRNPAVLQFPVPGGAPAPADARVAAPVVYSAQGEQA 102
>gnl|CDD|215575 PLN03100, PLN03100, Permease subunit of ER-derived-lipid
transporter; Provisional.
Length = 292
Score = 28.2 bits (63), Expect = 9.6
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
+G P + P +E +PP
Sbjct: 14 DGHPSMSALEEETSSENNEPSSEAELPLSKWSPP 47
>gnl|CDD|105710 PRK12514, PRK12514, RNA polymerase sigma factor; Provisional.
Length = 179
Score = 27.9 bits (62), Expect = 9.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 8 AAETPAEAAAASAEDEAKRLK--LEELERKRAEVRRR 42
A +P A A DE +R+ LEELE+ RA RR
Sbjct: 104 ADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRR 140
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 28.6 bits (64), Expect = 9.8
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
PA P E P + P D P A P PPA
Sbjct: 87 EPAS--PLKVPEMPTGPASAPLPIARPDNPDAPPTPPA 122
>gnl|CDD|153355 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Protein 1. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Proline-Serine-Threonine
Phosphatase-Interacting Protein 1 (PSTPIP1), also known
as CD2 Binding Protein 1 (CD2BP1), is mainly expressed
in hematopoietic cells. It is a binding partner of the
cell surface receptor CD2 and PTP-PEST, a tyrosine
phosphatase which functions in cell motility and Rac1
regulation. It also plays a role in the activation of
the Wiskott-Aldrich syndrome protein (WASP), which
couples actin rearrangement and T cell activation.
Mutations in the gene encoding PSTPIP1 cause the
autoinflammatory disorder known as PAPA (pyogenic
sterile arthritis, pyoderma gangrenosum, and acne)
syndrome. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 242
Score = 28.0 bits (62), Expect = 9.8
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 25/90 (27%)
Query: 17 AASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEEL 76
A +E K L EE ++ E R++ E ER +K ++ L KK
Sbjct: 80 AGMLREELKSL--EEFRERQKEQRKKYEAVM-----------ERVQKSKVSLYKKT---- 122
Query: 77 KREQERRALERKRVIDERCGEPKDTDDMAE 106
+E K+ ++RC E + + E
Sbjct: 123 --------MESKKTYEQRCREADEAEQTFE 144
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 28.4 bits (64), Expect = 9.9
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Query: 50 RRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEI 109
KG + +R KK+ L +KK+ +CGE E
Sbjct: 118 IDPKGKNSKKRLKKINNLCKKKSICS------------------KCGEDNGGLKAFEG-- 157
Query: 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENK 169
C +Y +I A + +LK+ EI EL +++ L + V I KK+SK + +
Sbjct: 158 ---CGKYQPKISKDGAEAIKA----LLKNIEIEELKEKLRKLNPEKVLQIFKKISKEDEE 210
Query: 170 F 170
Sbjct: 211 I 211
>gnl|CDD|198423 cd09224, CytoC_RC, Cytochrome C subunit of the bacterial
photosynthetic reaction center. Photosynthesis in
purple bacteria is dependent on light-induced electron
transfer in the reaction center (RC), coupled to the
uptake of protons from the cytoplasm. The RC contains a
cytochrome molecule which re-reduces the oxidized
electron donor. The electron transfer reactions of
photosynthesis are performed by the following three
components: the photosynthetic reaction center (RC), the
cytochrome, and the soluble electron carrier protein.
Firstly, the RC promotes the light-induced charge
separation across the plasma membrane, which results in
the oxidation of a pair of light-harvesting complexes,
LH1 and LH2, and the reduction of quinone to quinol. The
quinol then leaves the RC and moves to the cytochrome
complex through the quinone pool of the plasma membrane.
Secondly, the cytochrome complex reoxidizes the quinol
to quinone, and the released electrons are transferred
to soluble electron carriers. Third, the soluble
electron carriers transport the electrons to the RC
through the periplasmic space. Finally, the
photo-oxidized light-harvesting complex is reduced by
the soluble electron carriers, and the RC comes back to
the initial state. In the course of the oxidation and
reduction of the quinones, a transmembrane
electrochemical gradient of protons is formed, and its
energy is used to produce ATP by the ATP synthase
complex.
Length = 300
Score = 28.1 bits (63), Expect = 9.9
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 456 PPAE----GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
PP E G E P A PA AP PA P E P A
Sbjct: 3 PPVETVQTGYRGTGMEQVKNPRALQPPADANQAPAPLPAAPNEGPKAGQVY 53
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 27.2 bits (61), Expect = 9.9
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 1 MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEE 45
EE A A+ AE AE +A+R+ + + + ++ +E
Sbjct: 75 TAEEVKANAQKEAELIIKEAEAKAERI-VNDANEEAKKLATEYDE 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.304 0.128 0.371
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,139,653
Number of extensions: 3083426
Number of successful extensions: 34554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16072
Number of HSP's successfully gapped: 3826
Length of query: 503
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 402
Effective length of database: 6,457,848
Effective search space: 2596054896
Effective search space used: 2596054896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 61 (27.5 bits)