RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9560
(503 letters)
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 153 bits (389), Expect = 2e-44
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 47 SGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAE 106
+KK ++ RK +L+ LL + A +EL+RE E R E+ R + R +P + +
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGF 60
Query: 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKY 166
E+ DL ++ R+ ++ +Y+++ ++ EI +L +++ DLRGKF RP L++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRIS 120
Query: 167 ENKFAKL---QKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKK 215
+ + + + R+ LK VKK + + E + +W K ++
Sbjct: 121 ADAMMQALLGARAKESLDLRAHLKQVKKED---TEKENREVGDWRKNIDALS 169
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 146 bits (369), Expect = 1e-41
Identities = 38/169 (22%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 50 RRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEI 109
KK R++ L+ + + A E+++E + +E++ + E M E +
Sbjct: 3 EEKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPGSMQELQ- 61
Query: 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENK 169
+L ++ +I +++ +Y+ + ++ + E+ +L +++ DLRGKF RP L++V +
Sbjct: 62 -ELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADA 120
Query: 170 FAKL---QKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKK 215
+ K + R+ LK VKK E + ++ + +W K E K
Sbjct: 121 MLRALLGSKHKVNMDLRANLKQVKK-EDTEKEKDLRDVGDWRKNIEEKS 168
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 126 bits (319), Expect = 4e-35
Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 47 SGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAE 106
+KK ++ RK +L+ LL + A +EL+RE E R E+ R + R +P + +
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGF 60
Query: 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSK 165
E+ DL ++ R+ ++ +Y+++ ++ EI +L +++ DLRGKF RP L++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRI 119
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 76.1 bits (187), Expect = 4e-17
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 67 LLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI 126
L K + K++ R +K+V+ ER +P + D + ED++ D +E W +Y L+
Sbjct: 8 YLAKADQKRGKKQTARE--TKKKVLAERR-KPLNIDHLNEDKLRDKAKELWDWLYQLQTE 64
Query: 127 KYELDREIMLKDFEITELGKQVNDLRGKFVRPILKK 162
KY+ +I K +EI L +++ + + K
Sbjct: 65 KYDFAEQIKRKKYEIVTLRNRIDQAQKHSKKAGAKG 100
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 70.8 bits (172), Expect = 5e-13
Identities = 29/141 (20%), Positives = 34/141 (24%), Gaps = 2/141 (1%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
E A P E E EG A E +E A PA
Sbjct: 21 GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
A A P E A AE + A P A E PA
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAE--TPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 482 ADAPPAEPAPPAEAPPAESAP 502
A+ E P ++
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLK 159
Score = 67.3 bits (163), Expect = 7e-12
Identities = 26/127 (20%), Positives = 31/127 (24%), Gaps = 4/127 (3%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
E E + + E + AEG A +PA
Sbjct: 21 GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80
Query: 441 ----APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A A + E A P AE P E P A E P AEA
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
Query: 497 PAESAPA 503
E
Sbjct: 141 KTEKEVQ 147
Score = 65.4 bits (158), Expect = 2e-11
Identities = 24/117 (20%), Positives = 30/117 (25%), Gaps = 3/117 (2%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
P GA G EA EG A E AEG
Sbjct: 17 LYFQGEETAVPENSGANTELVSGESEH---STNEADKQNEGEHARENKLEKAEGVATASE 73
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+P + A E A A A +E P+ + EA P +
Sbjct: 74 TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Score = 56.9 bits (136), Expect = 1e-08
Identities = 28/198 (14%), Positives = 42/198 (21%), Gaps = 4/198 (2%)
Query: 303 DDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEG--- 359
+E L T P + + ++ H E + A + AEG
Sbjct: 11 HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
A E A + P + + P+AE P E E
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
+ PA A E P + E P
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGA-REDDAINRGSV 189
Query: 480 PPADAPPAEPAPPAEAPP 497
A +
Sbjct: 190 VLASRRTGHLVNEKASKE 207
Score = 52.3 bits (124), Expect = 3e-07
Identities = 36/233 (15%), Positives = 54/233 (23%), Gaps = 37/233 (15%)
Query: 197 EDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEV 256
+ + E PE+ + E E + E EGE E
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHST----------NEADKQNEGEHAR-ENK 61
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
E P + + T E +A +A
Sbjct: 62 LEKAEGVATASETASPASNEAATTETAE--------------------------AASAAK 95
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
P+ VV +T +A + + E KPE D + PA A E + E
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTE 155
Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
+ + P A A A A
Sbjct: 156 KTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEA 208
Score = 51.9 bits (123), Expect = 4e-07
Identities = 25/265 (9%), Positives = 35/265 (13%), Gaps = 57/265 (21%)
Query: 233 ASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKD 292
+ E P E + E
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAREN------- 60
Query: 293 TVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPAD 352
E+ EG E +PA
Sbjct: 61 -----------------------------------------KLEKAEGVATASETASPAS 79
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
A A E A + E P A
Sbjct: 80 NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT---------NQG 130
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
E P AEA + P +
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVV 190
Query: 473 PAEGAPAPPADAPPAEPAPPAEAPP 497
A + ++ A
Sbjct: 191 LASRRTGHLVNEKASKEAKVQALSN 215
Score = 50.3 bits (119), Expect = 1e-06
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPP 246
+ E S +A+K+ + E +E + +K E ++ +A+ E E
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTE-TAEAASAA 94
Query: 247 EGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
+ E+ E V P E +P ++ P E
Sbjct: 95 KPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDES 133
Score = 33.8 bits (76), Expect = 0.14
Identities = 12/96 (12%), Positives = 25/96 (26%)
Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPP 246
+ + +A KPE + +P+ + E+ G E+
Sbjct: 78 ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 247 EGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
E + E P P+ + +
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLK 173
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 62.7 bits (152), Expect = 2e-12
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 68 LRKKAAEELKREQERRALERKR-VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI 126
++K+A E K + + E+K+ ++ ER + D + ED++ + +E WQ IYNLEA
Sbjct: 6 IQKQAQTERKSGKRQTEREKKKKILAERR-KVLAIDHLNEDQLREKAKELWQTIYNLEAE 64
Query: 127 KYELDREIMLKDFEITELGKQVNDLR 152
K++L + + +EI L ++ND +
Sbjct: 65 KFDLQEKFKQQKYEINVLRNRINDNQ 90
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 68.3 bits (166), Expect = 3e-12
Identities = 25/154 (16%), Positives = 33/154 (21%), Gaps = 2/154 (1%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
G PA+ PP P A G + P +GA P+ G
Sbjct: 13 QLQYGQNATPLQQPAQFMPP--QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
+ P + A PA G P+
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P + P P PP P
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIP 164
Score = 66.8 bits (162), Expect = 9e-12
Identities = 22/143 (15%), Positives = 27/143 (18%), Gaps = 6/143 (4%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
A G PA+ PP PA P A
Sbjct: 12 AQLQYGQNATPLQQPAQFMPP---QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
+ + P A P P G P + A PA G P+
Sbjct: 69 LHQQIDQATTSMNDMHLHNVPLVDPNAYMQP---QVPVQMGTPLQQQQQPMAAPAYGQPS 125
Query: 480 PPADAPPAEPAPPAEAPPAESAP 502
P
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTELP 148
Score = 64.8 bits (157), Expect = 4e-11
Identities = 25/144 (17%), Positives = 33/144 (22%), Gaps = 6/144 (4%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
+ + P + A P PA+ PP A + G PP P
Sbjct: 2 SHHKKRVYPQAQLQYGQNATP--LQQPAQFMPPQ---DPAAAGMSYGQMGMPPQGAVPSM 56
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA-EGAPAPPAEGAP 478
A P A P P G P +
Sbjct: 57 GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116
Query: 479 APPADAPPAEPAPPAEAPPAESAP 502
A PA P+ P + P
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYP 140
Score = 62.9 bits (152), Expect = 1e-10
Identities = 28/168 (16%), Positives = 42/168 (25%), Gaps = 6/168 (3%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
+R + + G+ + PA PP P A G + P +GA P+ G
Sbjct: 6 KRVYPQAQLQYGQNATPLQQPAQFMPP--QDPAAAGMSYGQMGMPPQGAVPSMGQQQ--F 61
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
PA+ + A + P P A P P
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPL--VDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+ + P + P P P D P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPER 167
Score = 62.2 bits (150), Expect = 2e-10
Identities = 17/132 (12%), Positives = 28/132 (21%), Gaps = 1/132 (0%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
+ + P + A P + P A G + P + P+ G
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
PA + + P A P P + P
Sbjct: 62 -LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 492 PAEAPPAESAPA 503
+ A
Sbjct: 121 YGQPSAAMGQNM 132
Score = 58.3 bits (140), Expect = 4e-09
Identities = 25/150 (16%), Positives = 32/150 (21%), Gaps = 2/150 (1%)
Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
P P A + G PP P A + +
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85
Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P P P G P + A A P+ +
Sbjct: 86 HNVPLVDPNAYMQPQ--VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143
Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
E P P PP PP P+E
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSE 173
Score = 50.6 bits (120), Expect = 9e-07
Identities = 22/154 (14%), Positives = 28/154 (18%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
G PP P A + A P
Sbjct: 43 GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
+ P A A E PP PP
Sbjct: 103 VQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLV 162
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P+ ++A P A P S+
Sbjct: 163 IPPERMLVPSELSNASPDYIRSTLNAVPKNSSLL 196
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 57.8 bits (139), Expect = 3e-09
Identities = 18/101 (17%), Positives = 23/101 (22%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
P + P+ + A A P PAPP AP A P
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 463 APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P G + P A A
Sbjct: 69 SVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Score = 57.1 bits (137), Expect = 6e-09
Identities = 24/121 (19%), Positives = 30/121 (24%), Gaps = 3/121 (2%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G+ + P P A A A PP PA P P A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPA---PPPPPAPAA 58
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P + P P + AP P +AP + P A P
Sbjct: 59 GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 503 A 503
Sbjct: 119 P 119
Score = 57.1 bits (137), Expect = 7e-09
Identities = 29/133 (21%), Positives = 34/133 (25%), Gaps = 4/133 (3%)
Query: 359 GAPPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
G+ + P P+ A A P P P PA G P
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P + G P + AP P A APPA G P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAP---AVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 478 PAPPADAPPAEPA 490
P P D E
Sbjct: 119 PVPEPDPVRVEEV 131
Score = 49.4 bits (117), Expect = 2e-06
Identities = 24/115 (20%), Positives = 26/115 (22%), Gaps = 2/115 (1%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
P+ A A PP P PA G PP +
Sbjct: 17 RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILR 76
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
G P PA P AP A G P P R E
Sbjct: 77 GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131
Score = 35.1 bits (80), Expect = 0.050
Identities = 12/91 (13%), Positives = 13/91 (14%)
Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
AS P P P + P G
Sbjct: 25 SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
A P P A P
Sbjct: 85 SLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115
Score = 29.3 bits (65), Expect = 2.8
Identities = 11/65 (16%), Positives = 11/65 (16%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
S PPV P P P P P P T
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 279 VTPNP 283
Sbjct: 69 SVLQR 73
Score = 29.3 bits (65), Expect = 3.4
Identities = 19/115 (16%), Positives = 21/115 (18%), Gaps = 4/115 (3%)
Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAP 373
P + S D L P P A P P
Sbjct: 21 MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD--SVLQRILRGP 78
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
G A P E +A A P P P E
Sbjct: 79 TGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV--PGLYHHPVPEPDPVRVEEV 131
Score = 28.6 bits (63), Expect = 5.5
Identities = 13/77 (16%), Positives = 16/77 (20%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P IP A P PP P P +
Sbjct: 16 PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75
Query: 271 IPPTPPSPVTPNPEELW 287
PT P + P +
Sbjct: 76 RGPTGPGTTSLAPAVRY 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 4e-07
Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 57/213 (26%)
Query: 29 LEEL--ERKRAEVRRRMEEASGARRKKGFMTPERKKKLR-----LLLRKKAAEELKREQE 81
L + + +++V + + K + ++ K+ + L K E +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL----HKYS-LVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 82 RRALERKRVIDERCGE--PKDTDDMAEDEIGDLCQEYW-QRI-YNLEAI----KYELDRE 133
R ++ + + D Y+ I ++L+ I + L R
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ-----------YFYSHIGHHLKNIEHPERMTLFRM 495
Query: 134 IMLKDFE-----ITELGKQVN----------DLRGKFVRPILKKVSKYENKFAKLQK--- 175
+ L DF I N L+ + I KYE +
Sbjct: 496 VFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLP 553
Query: 176 KAAEFNFRS------QLKAVKKREFSMEDAEKE 202
K E S ++ + + E E+A K+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 50.6 bits (120), Expect = 9e-07
Identities = 53/411 (12%), Positives = 103/411 (25%), Gaps = 152/411 (36%)
Query: 15 AAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMT-PERKKKLRLLLRK--- 70
+ E + +R + K ++ + KLR L +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 71 -------------K---AAEELKREQERRALERKRV--ID-ERCGEPKDTDDMAEDEIGD 111
K A + + + ++ K + ++ + C P+ +M + +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 112 LCQEYWQR-------IYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164
+ + R + +I+ EL R + K +E L +L V
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------------VLLNVQ 254
Query: 165 KYENKFAKLQKKAAE-FNFRSQ-------------LKAVKKREFSMEDAEKEKKPEWVKE 210
KA FN + L A S++ +
Sbjct: 255 ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTP 300
Query: 211 PESKK---KRIPIPEPEPEPESATD---------ASDVEDGKETP--------------- 243
E K K + P+ P A + DG T
Sbjct: 301 DEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 244 ------LPPEGEQP--------PVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLY 289
L P + P P + + +W
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTI------LLSL--------------IWFD 398
Query: 290 LKDTVSASNPVSIDDLVEKLM--SAVSATPQPLLKSV--VKDTLRRQASHE 336
+ + + +V KL S V P+ S+ + L+ + +E
Sbjct: 399 VIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Score = 38.3 bits (88), Expect = 0.006
Identities = 38/257 (14%), Positives = 65/257 (25%), Gaps = 91/257 (35%)
Query: 138 DFEITELGKQVNDL----RGKFVRPI--------LKKV-SKYENKFAKLQKKAAEFNFR- 183
DFE E Q D+ FV K + SK E + K A R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 184 ------SQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVE 237
Q + V+K F +E+ +++ P ++R +P + D
Sbjct: 68 FWTLLSKQEEMVQK--F-VEEVL-RINYKFLMSPIKTEQR----QPSMMTRMYIEQRDRL 119
Query: 238 DGKETPLPPEGEQPPVEEVPPPPEP-----------EPEPPV------------------ 268
V +P P V
Sbjct: 120 YNDNQVFAKY----NV----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 269 --EEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMS------------AVS 314
++ + WL + N S + ++E L +
Sbjct: 172 LSYKVQCKMDFKI------FWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 315 ATPQPLLKSVVKDTLRR 331
++ L ++ LRR
Sbjct: 220 SSNIKLRIHSIQAELRR 236
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 51.1 bits (123), Expect = 4e-07
Identities = 23/140 (16%), Positives = 25/140 (17%), Gaps = 16/140 (11%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
EG G P +G E E E PA A
Sbjct: 62 PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP------------AEGAPAPPAEG 476
A A P R +G G P
Sbjct: 122 EAGPNRRVIA----MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAA 177
Query: 477 APAPPADAPPAEPAPPAEAP 496
A A A E P
Sbjct: 178 AEEKAAPAAAKPATTEGEFP 197
Score = 47.6 bits (114), Expect = 6e-06
Identities = 26/138 (18%), Positives = 31/138 (22%), Gaps = 30/138 (21%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
EG G + A+ E E A A APA A
Sbjct: 62 PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 447 EGAPRAEG-APPA-----------------------------EGAPAPPAEGAPAPPAEG 476
E P A P+ + A A+ APA E
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181
Query: 477 APAPPADAPPAEPAPPAE 494
A A E P
Sbjct: 182 AAPAAAKPATTEGEFPET 199
Score = 45.3 bits (108), Expect = 3e-05
Identities = 17/136 (12%), Positives = 20/136 (14%), Gaps = 18/136 (13%)
Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
EG G P +G E + E PA
Sbjct: 62 PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 423 PPAEGAP----------AAEGAPAPAEGAPAPPA--------EGAPRAEGAPPAEGAPAP 464
A E + P A
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181
Query: 465 PAEGAPAPPAEGAPAP 480
A A P P
Sbjct: 182 AAPAAAKPATTEGEFP 197
Score = 38.4 bits (90), Expect = 0.005
Identities = 8/71 (11%), Positives = 13/71 (18%), Gaps = 2/71 (2%)
Query: 435 PAPAEG--APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P+P +G EG G +
Sbjct: 49 PSPVKGKVLEILVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 493 AEAPPAESAPA 503
+A + A
Sbjct: 109 VDAVAPNAPAA 119
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 51.1 bits (122), Expect = 5e-07
Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 16/119 (13%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
D + P E + A A A+ + A PP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQA----AYPPQGY 393
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
PP +G PP PP P +G P PP +GAPP PA P +G
Sbjct: 394 APPPQGYPPQGYPPQGYPPQGY-----PPQGYPPPP-------QGAPPQGAPPAAPPQG 440
Score = 50.7 bits (121), Expect = 7e-07
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 323 SVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 382
KD + E ++ + A + PP APP +G PP
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPP-- 402
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
P +G PP +G P +G P PP PP +GAPPA APP
Sbjct: 403 QGYPPQGYPP-QGYPP-QGYPPPPQGAPP--QGAPPA-APPQG 440
Score = 49.2 bits (117), Expect = 2e-06
Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
P E A A A+ + A PP AP +G PP
Sbjct: 354 IPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY-----PPQGYAPPPQGYPP--QGYP 406
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P P +G P PP APP + APPA P
Sbjct: 407 PQGYPPQGYPPQGYPPPPQGAPP-QGAPPAAPPQG 440
Score = 48.8 bits (116), Expect = 2e-06
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
E + A ++ AP+A+ A A + PP AP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAYPPQGYAP 395
Query: 463 APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P P +G P P P P PP APP + PA
Sbjct: 396 PPQGYPPQGYPPQGYP-PQGYPPQGYPPPPQGAPPQGAPPA 435
Score = 48.8 bits (116), Expect = 3e-06
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 319 PLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGA 378
P + + + + ++ E P E A A A+ +
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAY 388
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
PP APP +G PP P P +G PP PP APP +GAP A AP
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP----PPQGAPP--QGAPPA----APP 438
Query: 439 EG 440
+G
Sbjct: 439 QG 440
Score = 46.8 bits (111), Expect = 1e-05
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
+ + A PA + P+ A + + A P +G APP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGY-APP 396
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+G P P P +G P PP APP APPA P
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPP---QGAPPQGAPPAAP 437
Score = 44.5 bits (105), Expect = 6e-05
Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 23/127 (18%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
E + ++ AP A+ A E + A PP P
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P PP P +G P +G PP +G P PP APP
Sbjct: 397 PQGYPPQG------------------YPPQGYP-PQGYPP-QGYPPPP---QGAPPQGAP 433
Query: 478 PAPPADA 484
PA P
Sbjct: 434 PAAPPQG 440
Score = 43.0 bits (101), Expect = 2e-04
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 14/129 (10%)
Query: 320 LLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP 379
+ ++ Q +ETE + + + A A A+ +
Sbjct: 326 ISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ 385
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
PP APP +G P +G PP P + PP P +GAP P
Sbjct: 386 --AAYPPQGYAPPPQG---------YPPQGYPPQ--GYPPQGYPPQGYPPPPQGAP-PQG 431
Query: 440 GAPAPPAEG 448
PA P +G
Sbjct: 432 APPAAPPQG 440
Score = 34.9 bits (80), Expect = 0.062
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 7/111 (6%)
Query: 181 NFRSQLKAV-----KKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASD 235
FR + +F ++ E +K E P + E
Sbjct: 321 KFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQK 380
Query: 236 VEDGKETPLPPEGEQPPVEEVPP-PPEPEPEPPVEEIPPTPPSPVTPNPEE 285
++ + PP+G PP + PP P+ PP P P P P +
Sbjct: 381 MQQQ-QAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQ 430
Score = 32.6 bits (74), Expect = 0.31
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 212 ESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP--PPEPEPEPPVE 269
++ + + + + + P PP P PP+ P PP +
Sbjct: 367 DAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPP-Q 425
Query: 270 EIPPTPPSPVTP 281
PP P P
Sbjct: 426 GAPPQGAPPAAP 437
Score = 28.4 bits (63), Expect = 7.3
Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 2/78 (2%)
Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
E P E + A A A+ P P
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396
Query: 486 PAEPAPPAEAPPAESAPA 503
P P + P + P
Sbjct: 397 P--QGYPPQGYPPQGYPP 412
Score = 28.0 bits (62), Expect = 8.1
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 195 SMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETP-LPPEGEQPPV 253
S + A+ ++ +++ + ++ P P P+ G PP+G PP
Sbjct: 365 SADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPP 424
Query: 254 EEVPPPPEPEPEPP 267
+ PP P PP
Sbjct: 425 QGAPPQGAPPAAPP 438
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 50.9 bits (122), Expect = 6e-07
Identities = 25/175 (14%), Positives = 42/175 (24%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
PE E E + VE+ + P + + VEE P V
Sbjct: 20 QTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVA 79
Query: 281 PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEG 340
+ + + V + ++V + + +A E
Sbjct: 80 ESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVE 139
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
+ + PPAE P E + P EG
Sbjct: 140 AAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEG 194
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/191 (15%), Positives = 43/191 (22%), Gaps = 16/191 (8%)
Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
PE E E E+ + S + E+ + A
Sbjct: 20 QTPEKETEVQNEQPVVEEIVQAQEPVKA---------------SEQAVEEQPQAHTEAEA 64
Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEG 377
+ VV+ T + S + E + E + P E P E
Sbjct: 65 ETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREE-LPLPEDVNAEAV 123
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+P A A E EA A +
Sbjct: 124 SPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEI 183
Query: 438 AEGAPAPPAEG 448
A+ P EG
Sbjct: 184 AQEQEKPTKEG 194
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 48.9 bits (116), Expect = 1e-06
Identities = 31/144 (21%), Positives = 32/144 (22%), Gaps = 3/144 (2%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
PP + A P G G P P APA P GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG---VPMPQAPAGLAGPVRGVGGPSQQ 140
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
P A A A P P P G PP P
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
Query: 474 AEGAPAPPADAPPAEPAPPAEAPP 497
P P P P PP
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRPPP 224
Score = 48.5 bits (115), Expect = 1e-06
Identities = 36/139 (25%), Positives = 39/139 (28%), Gaps = 2/139 (1%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP--AEGPPPAEGAPPAEAPP 423
PP + A P G G PA P P GP G P +
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
P A A A P + P G PP G APP PP P P
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Query: 484 APPAEPAPPAEAPPAESAP 502
P P PP P
Sbjct: 204 GIPPGRGTPMGMPPPGMRP 222
Score = 46.6 bits (110), Expect = 7e-06
Identities = 27/141 (19%), Positives = 28/141 (19%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
P A P G G P P A +
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
A A A GAP P P G PP P P G
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 469 APAPPAEGAPAPPADAPPAEP 489
P PP P P
Sbjct: 205 IPPGRGTPMGMPPPGMRPPPP 225
Score = 44.3 bits (104), Expect = 3e-05
Identities = 29/139 (20%), Positives = 33/139 (23%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
++T G A G A G G P + G G P + P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
A A A A PP PP A P G P
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206
Query: 455 APPAEGAPAPPAEGAPAPP 473
PP P PP
Sbjct: 207 PGRGTPMGMPPPGMRPPPP 225
Score = 40.4 bits (94), Expect = 7e-04
Identities = 26/96 (27%), Positives = 29/96 (30%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
PP + A A P G A G PA AP P P++
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P G A A A A A AP P PP
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177
Score = 40.0 bits (93), Expect = 9e-04
Identities = 28/128 (21%), Positives = 32/128 (25%), Gaps = 3/128 (2%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G + G G P + G G P + P A A A + A
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
PP G PP P PP G P P PP
Sbjct: 165 PTQYPPGRGGPPP---PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221
Query: 461 APAPPAEG 468
P P G
Sbjct: 222 PPPPGMRG 229
Score = 36.5 bits (84), Expect = 0.011
Identities = 24/109 (22%), Positives = 27/109 (24%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
P P++ +G A A A A P
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
GAP P GPPP P G G P P P P G
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
Score = 36.5 bits (84), Expect = 0.011
Identities = 19/114 (16%), Positives = 22/114 (19%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
PP + A A A GP A A A
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P+ G A A A + P PP P
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Score = 35.0 bits (80), Expect = 0.035
Identities = 20/104 (19%), Positives = 21/104 (20%), Gaps = 1/104 (0%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE-GAPRAEG 454
A P P G PA P G P G P +
Sbjct: 82 VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P A A GAP P P P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP 185
Score = 32.7 bits (74), Expect = 0.18
Identities = 25/104 (24%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
E + EGPPP + A G P A G PA A A P
Sbjct: 75 ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGI--GRAAGRGIPAGVPMPQAPAGLAGPVR 132
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G P + A A A + P + PP P
Sbjct: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPP 176
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 50.0 bits (119), Expect = 2e-06
Identities = 29/101 (28%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
AP + G P A A + A PA PPA GA P P P + P G
Sbjct: 3 AAPTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
A A G A E AE A P A
Sbjct: 61 ATVAAGH-----ATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 47.6 bits (113), Expect = 8e-06
Identities = 26/93 (27%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 397 PAAEGAPAPPAEGPPPAEGAP--PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
PAA +P P + A PA PPA GA P P P +
Sbjct: 2 PAAPTSPGTP-GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A A G A E AE A PP
Sbjct: 61 ATVAAG-HATLREHLRDIKAENTDANFYVCPPP 92
Score = 46.1 bits (109), Expect = 2e-05
Identities = 26/94 (27%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
AP + G P A A PA APPA GA P P P PP
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT--GDPKPKKNKKPKNPTPPRPAGDN 60
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
A A AE A P P
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94
Score = 45.7 bits (108), Expect = 3e-05
Identities = 20/74 (27%), Positives = 21/74 (28%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
PAA +P A A A A APPA GA P PP A
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 489 PAPPAEAPPAESAP 502
A E
Sbjct: 62 TVAAGHATLREHLR 75
Score = 45.7 bits (108), Expect = 3e-05
Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
P A +P G A + A PA AP A GA P G P P P P PA
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT-GDPKPKKNKKPKNPTPPRPAGDN 60
Query: 483 DAPPAEPAPPAEAPPAESA 501
A A E A
Sbjct: 61 ATVAAGHATLREHLRDIKA 79
Score = 45.7 bits (108), Expect = 3e-05
Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
AP + G P A +A PA A G P P P+ P G A
Sbjct: 4 APTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
A A A PP A
Sbjct: 62 TV----AAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
Score = 43.8 bits (103), Expect = 1e-04
Identities = 19/83 (22%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 418 PAEAPPPAE--GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
PA P A A + A P AP + P P P PA
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 476 GAPAPPADAPPAEPAPPAEAPPA 498
A A AE A
Sbjct: 62 TVAAGHATLREHLRDIKAENTDA 84
Score = 42.3 bits (99), Expect = 3e-04
Identities = 18/94 (19%), Positives = 22/94 (23%), Gaps = 2/94 (2%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
AP + G P A + A P AA P + P PP A
Sbjct: 3 AAPTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A A A + P
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94
Score = 41.5 bits (97), Expect = 5e-04
Identities = 28/95 (29%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 362 PAEGAPPAE--GAPPAEGAP--PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
PA P A + A PA APPA GA P G P + P PP G
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT-GDPKPKKNKKPKNPTPPRPAGDN 60
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAP---APPAEGA 449
A A A A PP GA
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
Score = 41.5 bits (97), Expect = 5e-04
Identities = 18/96 (18%), Positives = 18/96 (18%), Gaps = 1/96 (1%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
PA P A A G P A P P PA
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDN 60
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
A AE A P A
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 41.1 bits (96), Expect = 7e-04
Identities = 22/87 (25%), Positives = 24/87 (27%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P A PA APPA GA P P + P PP A A
Sbjct: 9 GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEG 427
+ A PPP
Sbjct: 69 TLREHLRDIKAENTDANFYVCPPPTGA 95
Score = 41.1 bits (96), Expect = 9e-04
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 342 EP-KPEGEAPADGAPPAEGAP--PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+P P A + A PA APPA GA P P + P PP A
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRP-AGD 59
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
A A P GA
Sbjct: 60 NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
Score = 39.6 bits (92), Expect = 0.002
Identities = 14/52 (26%), Positives = 16/52 (30%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A P A + A PA AP AP +P P P P
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP 54
Score = 34.9 bits (80), Expect = 0.069
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P A +P P A A+ PA PAPPA P
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPK 41
Score = 31.9 bits (72), Expect = 0.56
Identities = 22/96 (22%), Positives = 23/96 (23%), Gaps = 10/96 (10%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P A G P P + P PP A A AE
Sbjct: 28 APPALGAAPTGDP-----KPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENT 82
Query: 403 PAPPAEGPPPAEG-----APPAEAPPPAEGAPAAEG 433
A PPP P P EG EG
Sbjct: 83 DANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 31.9 bits (72), Expect = 0.64
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 224 EP-EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
+P P S + P PP P +P+P+ + PTPP P N
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 283 P 283
Sbjct: 61 A 61
Score = 31.9 bits (72), Expect = 0.66
Identities = 6/69 (8%), Positives = 12/69 (17%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
P + + P P + ++P P P
Sbjct: 18 QAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDI 77
Query: 281 PNPEELWLY 289
+
Sbjct: 78 KAENTDANF 86
Score = 31.5 bits (71), Expect = 0.68
Identities = 18/139 (12%), Positives = 28/139 (20%), Gaps = 26/139 (18%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
P P + P +P P +A +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALG--------------------------AAPTGD 39
Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
P+P K+ + + + PP GA +
Sbjct: 40 PKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ 99
Query: 377 GAPPAEGAPPAEGAPPAEG 395
P EG EG
Sbjct: 100 FEQPRRCPTRPEGQNYTEG 118
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 47.9 bits (113), Expect = 4e-06
Identities = 27/165 (16%), Positives = 40/165 (24%), Gaps = 1/165 (0%)
Query: 334 SHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
+++ E E +A + G A G ++G A G+P G
Sbjct: 219 REFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSI 278
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP-RA 452
P P A P P + G P P P R
Sbjct: 279 GNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 338
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
E P P G+ G+ + P +
Sbjct: 339 EPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSS 383
Score = 47.9 bits (113), Expect = 5e-06
Identities = 18/197 (9%), Positives = 32/197 (16%)
Query: 307 EKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGA 366
+ + L G P+ + + +
Sbjct: 182 KNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQT 241
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
+G + G P + G + P
Sbjct: 242 KMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEP 301
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
G+ P G+ G P A P P P
Sbjct: 302 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNT 361
Query: 487 AEPAPPAEAPPAESAPA 503
+ P +
Sbjct: 362 GSSGSSSFRPDSSGHGN 378
Score = 46.4 bits (109), Expect = 1e-05
Identities = 25/146 (17%), Positives = 39/146 (26%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
++T+ G+ A G ++G A G+P G P P + G
Sbjct: 239 QQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGR 298
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
P P + G P P G P P P P + G
Sbjct: 299 PEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGT 358
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPP 481
+ + + P+ P
Sbjct: 359 WNTGSSGSSSFRPDSSGHGNIRPSSP 384
Score = 41.8 bits (97), Expect = 4e-04
Identities = 29/204 (14%), Positives = 49/204 (24%), Gaps = 4/204 (1%)
Query: 273 PTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQ 332
+ P YL ++ + + + + LL+ +
Sbjct: 188 LEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLET 247
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
+ G+ +G A G+P G + G P G P A
Sbjct: 248 FGGDGHARGDSVSQGTGLAPGSPRKPG-TSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGT 306
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
G+ G P A P P + G P P +
Sbjct: 307 WNPGRPEPGSAGTWNPGRPEPGSAGT---WNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
Query: 453 EGAPPAEGAPAPPAEGAPAPPAEG 476
G+ + P+ P G
Sbjct: 364 SGSSSFRPDSSGHGNIRPSSPDWG 387
Score = 37.5 bits (86), Expect = 0.008
Identities = 27/203 (13%), Positives = 47/203 (23%), Gaps = 1/203 (0%)
Query: 249 EQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEK 308
EQ + P + + P ++ T P P + L+ + L
Sbjct: 189 EQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETF 248
Query: 309 LMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPP 368
+ + + R+ P G + P P + G
Sbjct: 249 GGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWN 308
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
P G P A G+ G P G+ + +
Sbjct: 309 PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEP-GSAGTWNTGSSGSS 367
Query: 429 PAAEGAPAPAEGAPAPPAEGAPR 451
+ P+ P G R
Sbjct: 368 SFRPDSSGHGNIRPSSPDWGTFR 390
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 48.2 bits (115), Expect = 6e-06
Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 37/197 (18%)
Query: 13 AEAAAASAEDEAKRLKLEE-----LERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL 67
A+ + EA+ ++ + LE K +++R+++ E+ K+ + L
Sbjct: 902 AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID--------------EQNKEYKSL 947
Query: 68 LRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK 127
L K E+ E L D + + E + + R+ +L+
Sbjct: 948 LEKMNNLEITYSTETEKLR------------SDVERLRMSE--EEAKNATNRVLSLQEEI 993
Query: 128 YELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLK 187
+L +E+ E + + + + + + VS+ + + L+ + E N R +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHE----TEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 188 AVKKREFSMEDAEKEKK 204
A + E + +E K
Sbjct: 1050 AKEITETMEKKLVEETK 1066
Score = 40.1 bits (94), Expect = 0.002
Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 32/192 (16%)
Query: 28 KLEELERKRAEVRRRMEEASGARRKKGFMTPERK-KKLRLLLRKKAAEELKREQERRALE 86
K + R + + R K M E K ++ +R A + +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 87 RKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGK 146
+ MA+ E+ L E + + + + L+ +IM +L +
Sbjct: 893 LQCCYRRM---------MAKRELKKLKIE-ARSVERYKKLHIGLENKIM-------QLQR 935
Query: 147 QVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPE 206
++++ K+ K L+ + + + ++ + +E+E K
Sbjct: 936 KIDEQN--------KEYKSLLEKMNNLEITYST-----ETEKLRSDVERLRMSEEEAK-N 981
Query: 207 WVKEPESKKKRI 218
S ++ I
Sbjct: 982 ATNRVLSLQEEI 993
Score = 32.0 bits (73), Expect = 0.50
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 1 MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPER 60
+ + +T E + + + E+L + E ++ ++ ++
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR---IHDQ 1049
Query: 61 KKKLRLLLRKKAAEELKREQERRALERKRV 90
K++ + KK EE K+ + ER R
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRY 1079
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 46.8 bits (111), Expect = 2e-05
Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 17/218 (7%)
Query: 14 EAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
+A + + L+ LEE E R +++ A G +K + + L +++
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Query: 72 AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131
E + L + + + K+ + E+ ++ + LE IK +L+
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 132 REIMLKDFEITELGKQVNDLRGKFVR------PILKKVSKYENKFAKLQKKAAEF----- 180
E +I EL Q+ +L+ + + L ++ ++ KK E
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 181 NFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRI 218
+ + L++ K + AEK+K+ + +E E+ K +
Sbjct: 1127 DLQEDLESEKA---ARNKAEKQKR-DLSEELEALKTEL 1160
Score = 37.5 bits (87), Expect = 0.010
Identities = 33/209 (15%), Positives = 80/209 (38%), Gaps = 12/209 (5%)
Query: 14 EAAAASAEDEAKRL--KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL---L 68
E +E L KL+ AE + +++ + E + ++
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 69 RKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKY 128
++ AE+ K +Q+ LE + +E + + + D ++ I +E
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK---IKKMEDDILIMEDQNN 1000
Query: 129 ELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKA 188
+L +E L + +++L + + K + + K +K+E+ ++L+ + + Q
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEK-AKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 189 VKKREFSMEDAEKEKKPEWVKEPESKKKR 217
KR+ + E E + E +++
Sbjct: 1060 KIKRKL---EGESSDLHEQIAELQAQIAE 1085
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 46.6 bits (111), Expect = 2e-05
Identities = 25/193 (12%), Positives = 59/193 (30%), Gaps = 10/193 (5%)
Query: 32 LERKRAEVRRRMEEASGARRK-KGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRV 90
E K+ E + +E S T R K + + + ALE+
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE- 859
Query: 91 IDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK--YELDREIMLKDFEITELGKQV 148
+ E + + +I L Q+Y + + LE + IT + ++
Sbjct: 860 --QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKL 917
Query: 149 NDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEK---EKKP 205
+L F + + + + E N+ + ++++
Sbjct: 918 KNLE-AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 976
Query: 206 EWVKEPESKKKRI 218
+ ++ +R+
Sbjct: 977 TYKNTLLAELERL 989
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 44.3 bits (105), Expect = 7e-05
Identities = 44/157 (28%), Positives = 56/157 (35%), Gaps = 2/157 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P GE + G +G+P G P G P A+G + G+P +G G +
Sbjct: 341 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGED 400
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P P GPP A G P +GA G P A G +G A+G
Sbjct: 401 GRPGPA--GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 458
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P P A +P P PP EA
Sbjct: 459 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK 495
Score = 43.2 bits (102), Expect = 2e-04
Identities = 41/154 (26%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE G A G+P G P G P A+G + G+P +G G +G P
Sbjct: 347 GERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G G P + G G P P +G A+G P G
Sbjct: 407 GPPGAR--GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 464
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
E PA P PP E P E
Sbjct: 465 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE 498
Score = 42.8 bits (101), Expect = 2e-04
Identities = 40/155 (25%), Positives = 46/155 (29%), Gaps = 1/155 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G ADG +G G+P G + G G GA G+P
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 383
Query: 399 AEGAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
+ G GP +G P PP A G G P P A P G G P
Sbjct: 384 SPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 443
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
A G E P A P
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 478
Score = 42.4 bits (100), Expect = 3e-04
Identities = 38/154 (24%), Positives = 45/154 (29%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G A G + G+P +G G +G P G P A G G P
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPG 422
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+GA P G G P G GA P A G G+P
Sbjct: 423 PKGAAGEP--GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+G P P A P P
Sbjct: 481 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR 514
Score = 41.6 bits (98), Expect = 6e-04
Identities = 37/157 (23%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G +G G P A G G P +GA G G P GA G
Sbjct: 395 GPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 454
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GA PP GP G + P + G G P A P +G P GAP G
Sbjct: 455 GAQGPP--GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A P
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGD 549
Score = 41.2 bits (97), Expect = 7e-04
Identities = 49/160 (30%), Positives = 56/160 (35%), Gaps = 1/160 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ G+ P+G A G G G P GAP +G G GA A G
Sbjct: 582 DRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRG 641
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P P GPP A+G P A+ P GA G P PA A P G A G
Sbjct: 642 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKG 701
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A G+ PP A P P PP A
Sbjct: 702 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 741
Score = 40.9 bits (96), Expect = 0.001
Identities = 37/152 (24%), Positives = 40/152 (26%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G+A G P +GA G G P GA G GA G
Sbjct: 407 GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 466
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G GP + G P G G AP GA G P G
Sbjct: 467 GERGEQ--GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG 524
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
PP P A P P
Sbjct: 525 VEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556
Score = 40.5 bits (95), Expect = 0.001
Identities = 44/155 (28%), Positives = 49/155 (31%), Gaps = 1/155 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ GEP P G A G P A+G P A+G P GA G P G G GAP
Sbjct: 639 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 698
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
+GA G GA PP G G P PA + G G P
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPG 758
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P PP A P
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIA 793
Score = 40.5 bits (95), Expect = 0.001
Identities = 41/160 (25%), Positives = 45/160 (28%), Gaps = 1/160 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ GE P G A GA A G G P G GA GA G A+G
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 677
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P GP GAP + + G P A G P A P G G P
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 737
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
G PA PP
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGA 777
Score = 40.5 bits (95), Expect = 0.001
Identities = 45/162 (27%), Positives = 56/162 (34%), Gaps = 6/162 (3%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G G G + G +G+P G P G P A+G + G+P +
Sbjct: 329 GSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 388
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G PP GP +G P PP A G G P P A P G G P A G
Sbjct: 389 GKTGPP--GPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 446
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A+G P P A PA +P + P
Sbjct: 447 PAGKD----GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 484
Score = 39.7 bits (93), Expect = 0.002
Identities = 38/127 (29%), Positives = 44/127 (34%), Gaps = 5/127 (3%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE GE +G P G A GAP +GA GAP GAP ++GAP +G P
Sbjct: 515 GERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAP---GAPGSQGAPGLQGMPGER 571
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GA P GP G + A G G P A G G G
Sbjct: 572 GAAGLP--GPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAG 629
Query: 461 APAPPAE 467
Sbjct: 630 PTGARGA 636
Score = 39.3 bits (92), Expect = 0.003
Identities = 38/152 (25%), Positives = 43/152 (28%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P +G+ A G P GA G P G G GAP +GA + G P A
Sbjct: 653 GPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGAT 712
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G G PP G EG+ P G G P G
Sbjct: 713 GFPGAA--GRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAG 770
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P PA P
Sbjct: 771 EKGAPGADGPAGAPGTPGPQGIAGQRGVVGLP 802
Score = 39.3 bits (92), Expect = 0.003
Identities = 43/155 (27%), Positives = 51/155 (32%), Gaps = 1/155 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
GE GE G A G A G G EG P G A GAP +GA
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
GAP P ++G P +G P G G P AP +G G
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIG 608
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P + A P+ A A P + P
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEP 643
Score = 39.3 bits (92), Expect = 0.003
Identities = 45/157 (28%), Positives = 51/157 (32%), Gaps = 2/157 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G GE G+P +G P G P G P +G P GAP GA G P
Sbjct: 464 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGER 523
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G PP GP A GAP + GAP A G+ P GA G
Sbjct: 524 GVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR 583
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
G P P +G P PA
Sbjct: 584 GDAGPKGADGA-PGKDGVRGLTGPIGPPGPAGAPGDK 619
Score = 39.3 bits (92), Expect = 0.003
Identities = 42/152 (27%), Positives = 49/152 (32%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G+ G P GAP GA G P G G GA A G A+
Sbjct: 488 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAK 547
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G P ++GAP + P GA G A A+GAP +G G
Sbjct: 548 GDAGAP--GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTG 605
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
PP A P P
Sbjct: 606 PIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP 637
Score = 38.9 bits (91), Expect = 0.004
Identities = 36/128 (28%), Positives = 40/128 (31%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G+ G GA G GA G G +G + G G
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG 488
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P E G P GAP G P G P A A GAP +GA
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548
Query: 458 AEGAPAPP 465
GAP P
Sbjct: 549 DAGAPGAP 556
Score = 38.6 bits (90), Expect = 0.005
Identities = 39/161 (24%), Positives = 46/161 (28%), Gaps = 2/161 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P P G G GA G G +G + G G G
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 494
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P + G P GA P G G P AP +GA GAP
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPG 554
Query: 458 AEGAPAPP-AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A G+ P +G P P A+ P
Sbjct: 555 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAP 595
Score = 38.6 bits (90), Expect = 0.005
Identities = 43/127 (33%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G A GA A G A+G A GAP ++GAP +G P GA G
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 581
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G P G A G G P GAP A G A GAP
Sbjct: 582 DRGDAGPK--GADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGD 639
Query: 459 EGAPAPP 465
G P PP
Sbjct: 640 RGEPGPP 646
Score = 38.2 bits (89), Expect = 0.008
Identities = 40/126 (31%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE P G A G P G P +G G A+G G G+P GAP
Sbjct: 80 GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM 139
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P E G P A G A A GA G P P A GA G A
Sbjct: 140 GPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGAR 199
Query: 460 GAPAPP 465
G+ P
Sbjct: 200 GSEGPQ 205
Score = 38.2 bits (89), Expect = 0.008
Identities = 41/152 (26%), Positives = 46/152 (30%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G GAP +GA + G P A G P A G G G P G E
Sbjct: 683 GPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 742
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G+ P G G P PP G +GAP A AP G G G
Sbjct: 743 GSKGPR--GETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVG 800
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P E + P P
Sbjct: 801 LPGQRGERGFPGLPGPSGEPGKQGPSGASGER 832
Score = 37.8 bits (88), Expect = 0.009
Identities = 44/164 (26%), Positives = 50/164 (30%), Gaps = 4/164 (2%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE G G G P G P + G P A+G +G G+P G +
Sbjct: 302 GEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSP 361
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G GA P + G G P PA P G P A G G
Sbjct: 362 GEAGRP--GEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMG 419
Query: 461 APAPPAEGAPAPPA--EGAPAPPADAPPAEPAPPAEAPPAESAP 502
P P A G P PP PA A A
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 463
Score = 37.8 bits (88), Expect = 0.010
Identities = 41/161 (25%), Positives = 49/161 (30%), Gaps = 2/161 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G +G G GA G G P G P + G P A+G +G
Sbjct: 288 EPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAG 347
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G+P P G P G P P A+G + G+P P P G G
Sbjct: 348 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAG 407
Query: 458 AEGAPAPP-AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
GA G P P A P A P
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 448
Score = 36.2 bits (84), Expect = 0.027
Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ G P+GE + G A G G P G P A G A G A GA G
Sbjct: 117 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTG 176
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P P A G G A +G G P PA A GA GA
Sbjct: 177 PTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKG 236
Query: 458 AEGAPAPP 465
A GAP
Sbjct: 237 ANGAPGIA 244
Score = 35.9 bits (83), Expect = 0.036
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P +G G P GA G G +GA A G G G P
Sbjct: 554 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPA 613
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GAP G G A G G P PA A P A+G P A+G P G
Sbjct: 614 GAPGDK--GEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 671
Query: 461 APAPP 465
A
Sbjct: 672 AKGDA 676
Score = 35.9 bits (83), Expect = 0.037
Identities = 32/125 (25%), Positives = 36/125 (28%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P EG DG+P A+G G GAP A GAP G G G
Sbjct: 854 GAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPI 913
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G G G G + G P + G G
Sbjct: 914 GPVGPA--GARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 971
Query: 461 APAPP 465
A P
Sbjct: 972 ASGPA 976
Score = 35.9 bits (83), Expect = 0.037
Identities = 31/127 (24%), Positives = 34/127 (26%), Gaps = 2/127 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P G G ++G G G G P G A GA GAP
Sbjct: 726 PSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPG 785
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G G G P G P G P + A G P G P
Sbjct: 786 TPGPQGIA--GQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 843
Query: 459 EGAPAPP 465
G P
Sbjct: 844 AGPPGES 850
Score = 35.5 bits (82), Expect = 0.042
Identities = 47/158 (29%), Positives = 51/158 (32%), Gaps = 1/158 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P GE A GA GAP G G G P G G P G P +
Sbjct: 764 GPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 823
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G E GPP G P PP G A GA +P A+G G
Sbjct: 824 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP 883
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
GAP P P PA + P P A
Sbjct: 884 GAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGA 921
Score = 35.5 bits (82), Expect = 0.046
Identities = 41/152 (26%), Positives = 51/152 (33%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GEP +G + A G G G G EGAP AEG+P +G+P A+G
Sbjct: 818 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 877
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G PP G P A GAP P G G P A G +G +G
Sbjct: 878 GPAGPP--GAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKG 935
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+ + PP P
Sbjct: 936 ETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQ 967
Score = 35.5 bits (82), Expect = 0.048
Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G+ G A GAP A GAP G G G G GA G
Sbjct: 872 GDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPR 931
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G EG +G G P + G P+ + G P + G+P +
Sbjct: 932 GDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKD 991
Query: 460 GAPAPP 465
G P
Sbjct: 992 GLNGLP 997
Score = 35.1 bits (81), Expect = 0.061
Identities = 34/128 (26%), Positives = 37/128 (28%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G+ +G G G G P G A GA GAP G G
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRG 797
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P G P G GA G P P G EGAP
Sbjct: 798 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG 857
Query: 458 AEGAPAPP 465
AEG+P
Sbjct: 858 AEGSPGRD 865
Score = 35.1 bits (81), Expect = 0.070
Identities = 37/141 (26%), Positives = 41/141 (29%), Gaps = 6/141 (4%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GEP G + G G P G G P G G A G P G P +
Sbjct: 44 GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMK 103
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G G A+G P G+P GAP P G P A G A G
Sbjct: 104 GHRGFS--GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 161
Query: 461 APAPPAEGAPAPPAEGAPAPP 481
A G P
Sbjct: 162 NDGAA----GAAGPPGPTGPT 178
Score = 34.7 bits (80), Expect = 0.080
Identities = 42/126 (33%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P G DGA A G P G G P A GA G A G+ +G
Sbjct: 152 GAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEP 211
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P P A GP GA A GAP GAP EG A G
Sbjct: 212 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNS 271
Query: 460 GAPAPP 465
G P P
Sbjct: 272 GEPGAP 277
Score = 33.9 bits (78), Expect = 0.13
Identities = 38/154 (24%), Positives = 43/154 (27%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G G G +GA G +G P + G A G G P G P
Sbjct: 93 LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 152
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A G G A GA P G P GA A A G+ +G
Sbjct: 153 APGPAGAR--GNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGE 210
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P P PA P A P
Sbjct: 211 PGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 244
Score = 33.9 bits (78), Expect = 0.14
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE EG A+G+P +G+P A+G G GAP A GAP G G
Sbjct: 848 GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGET 907
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P GP A G + P +G EG +G P G+P +
Sbjct: 908 GPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQ 967
Query: 460 GAPAPP 465
G
Sbjct: 968 GPSGAS 973
Score = 33.9 bits (78), Expect = 0.15
Identities = 39/152 (25%), Positives = 43/152 (28%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G A G +G P G P A G G P G +G G P
Sbjct: 23 GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER 82
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P P G G G +GA A A G+P GAP G
Sbjct: 83 GPPGPQ--GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 140
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
P E A A D PP
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPP 172
Score = 33.5 bits (77), Expect = 0.20
Identities = 38/158 (24%), Positives = 42/158 (26%), Gaps = 1/158 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
P P G + G P GAP +G G P GA G G P G
Sbjct: 14 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 73
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P P E GPP +GA G G G G+P
Sbjct: 74 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 133
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
GAP AP A P
Sbjct: 134 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGP 171
Score = 33.2 bits (76), Expect = 0.22
Identities = 35/126 (27%), Positives = 39/126 (30%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G G A G P +G G A+GAP +G G G A
Sbjct: 557 GSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAP 616
Query: 401 GAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G GP GA A G P G P P A+G P GA
Sbjct: 617 GDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA 676
Query: 460 GAPAPP 465
G P P
Sbjct: 677 GPPGPA 682
Score = 33.2 bits (76), Expect = 0.26
Identities = 42/158 (26%), Positives = 45/158 (28%), Gaps = 2/158 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P+G A G G G P G G GA G P G P
Sbjct: 785 GTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA 844
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G A GA + + GA G PA AP A GAP G G
Sbjct: 845 GPPGES--GREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 902
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
P P A A P E
Sbjct: 903 DRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEE 940
Score = 32.8 bits (75), Expect = 0.31
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G G GAP +G A+G P G G EG A G P
Sbjct: 257 GPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPS 316
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P PP E G P + G P A+ +G G+P PA +P G P G P A+
Sbjct: 317 GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 376
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P P D P PP
Sbjct: 377 GLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409
Score = 32.8 bits (75), Expect = 0.36
Identities = 38/162 (23%), Positives = 41/162 (25%), Gaps = 10/162 (6%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P+G G P GA G G P G G P G G A
Sbjct: 32 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 91
Query: 401 GAPAPP----------AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
G P G A+G P G+P GAP P G P
Sbjct: 92 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 151
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
A G A G P P P
Sbjct: 152 GAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEA 193
Score = 30.8 bits (70), Expect = 1.3
Identities = 40/153 (26%), Positives = 48/153 (31%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G GAP +G GAP +G A+G P G G EG A
Sbjct: 251 GARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGAR 310
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P P GPP G P + P A+G +G +G+P G P
Sbjct: 311 GEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA 370
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P P E P
Sbjct: 371 GLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRP 403
Score = 30.5 bits (69), Expect = 1.5
Identities = 33/142 (23%), Positives = 43/142 (30%), Gaps = 1/142 (0%)
Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP-AEGP 410
+ + + P G G P GAP +G G P GA P GP
Sbjct: 1 EMSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 60
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
P G + G P G P P P G P +G G + P
Sbjct: 61 PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 120
Query: 471 APPAEGAPAPPADAPPAEPAPP 492
A P +P + P + P
Sbjct: 121 AGPKGEPGSPGENGAPGQMGPR 142
Score = 30.1 bits (68), Expect = 2.1
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 5/155 (3%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P+G + GAP +G A+G P G G EG A G P G P
Sbjct: 263 GAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPP 322
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP--AEGAPAPPAEGAPRAEGAPP 457
G P + G P A+G + P G+P G G P G P A+G
Sbjct: 323 GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA--GLPGAKGLTG 380
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+ G+P P + P PA P PP
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQA 415
Score = 29.7 bits (67), Expect = 3.1
Identities = 35/156 (22%), Positives = 42/156 (26%), Gaps = 4/156 (2%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
+ ++ P G G P GAP +G G P GA G
Sbjct: 2 MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPP 61
Query: 401 GAPAPPAE----GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
G P + G P G P A G P G P +GA G
Sbjct: 62 GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 121
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+G P P E P P P P
Sbjct: 122 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPA 157
Score = 29.3 bits (66), Expect = 3.3
Identities = 41/128 (32%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
E G G G G P GA G P A+G P A+GA A G A G P
Sbjct: 191 GEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 250
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A G P GP A G P A G GA A G EG
Sbjct: 251 GARGPSGPE--GPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRG 308
Query: 458 AEGAPAPP 465
A G P P
Sbjct: 309 ARGEPGPS 316
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B
Length = 1026
Score = 43.9 bits (104), Expect = 1e-04
Identities = 39/154 (25%), Positives = 46/154 (29%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
GEP GE G A GAP +G A+G P +G +G G P +G P
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPG 478
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G G P G P GA G P A G+ G P
Sbjct: 479 PAGPAGEA--GKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGP 536
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+G PA A P P
Sbjct: 537 DGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVP 570
Score = 41.2 bits (97), Expect = 7e-04
Identities = 31/128 (24%), Positives = 39/128 (30%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P G+ G P +G P G G A G P +G G P +G
Sbjct: 374 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVG 433
Query: 399 AEGAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
GA AP +G A+G P + +G G P G G
Sbjct: 434 LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERG 493
Query: 458 AEGAPAPP 465
G P
Sbjct: 494 LHGEFGLP 501
Score = 41.2 bits (97), Expect = 8e-04
Identities = 37/155 (23%), Positives = 40/155 (25%), Gaps = 1/155 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P G ADG G + G G G G P G G+P
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G G P +G P P G A G P P P G G
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
A GAP P P PP
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPP 471
Score = 40.5 bits (95), Expect = 0.001
Identities = 37/160 (23%), Positives = 41/160 (25%), Gaps = 2/160 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P +G G G P +G P G G P G G P GA
Sbjct: 449 AQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARG 508
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G P G G + P G +G A AP G P G
Sbjct: 509 ERGPPGER--GAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGV 566
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G P E A D P PA
Sbjct: 567 AGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPA 606
Score = 40.5 bits (95), Expect = 0.001
Identities = 36/157 (22%), Positives = 39/157 (24%), Gaps = 2/157 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G+ G G G A G G G P + G P G GAP
Sbjct: 733 GKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFL 792
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G G + P G GA P P GAP G G
Sbjct: 793 GLPGSR--GERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPG 850
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
PP P PP P
Sbjct: 851 NDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGE 887
Score = 40.1 bits (94), Expect = 0.002
Identities = 38/156 (24%), Positives = 42/156 (26%), Gaps = 2/156 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P P G G P A G G +G G A G G G P
Sbjct: 713 RTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPG 772
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+ G P PP GP GAP P + G G G P A G P
Sbjct: 773 SAGPPGPP--GPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGN 830
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
G P A +P E
Sbjct: 831 VGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGE 866
Score = 40.1 bits (94), Expect = 0.002
Identities = 47/153 (30%), Positives = 50/153 (32%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE P GE A G G+ G P +G GA GAP G P G
Sbjct: 508 GERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVA 567
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P E G P G A A G P A GAP PA GA G G A
Sbjct: 568 GVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGAR 627
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G E P P+ A A P
Sbjct: 628 GIRGERGEPGPVGPSGFAGPAGAAGQPGAKGER 660
Score = 39.7 bits (93), Expect = 0.002
Identities = 38/161 (23%), Positives = 43/161 (26%), Gaps = 1/161 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P+G A G P GA G G G P A G G G P
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
GA GP +G A G G P + G P +G
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLG 787
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A G P A + P PP P
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPP 828
Score = 39.7 bits (93), Expect = 0.002
Identities = 39/154 (25%), Positives = 44/154 (28%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
EGG P G A A G G P G G A G P A+G +G +G
Sbjct: 614 EGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVG 673
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+G GPP GA P G G P A P G G P A
Sbjct: 674 PQGPVGAA--GPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGA 731
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P + A P
Sbjct: 732 AGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEK 765
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/125 (26%), Positives = 36/125 (28%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P+G A G G+ G P G+ G G P A G P G P
Sbjct: 778 GPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVN 837
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GAP G G G G P A A G G G
Sbjct: 838 GAPGEA--GRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRG 895
Query: 461 APAPP 465
P P
Sbjct: 896 EPGPA 900
Score = 39.7 bits (93), Expect = 0.003
Identities = 35/154 (22%), Positives = 42/154 (27%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ G G A G P G P + G P A+G G + G G G
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSG 358
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G P GP G+P P EG G G A G P
Sbjct: 359 RPGEPGLM--GPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGP 416
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+G P + A A A P
Sbjct: 417 KGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQ 450
Score = 39.7 bits (93), Expect = 0.003
Identities = 37/158 (23%), Positives = 43/158 (27%), Gaps = 1/158 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P G A +G G G GA G +G G+ G P +
Sbjct: 724 GPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQ 783
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P G P + G + G P G P P G P GAP
Sbjct: 784 GLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEA 843
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
G P P P PP P
Sbjct: 844 GRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGP 881
Score = 39.3 bits (92), Expect = 0.003
Identities = 35/152 (23%), Positives = 39/152 (25%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G+ G G A G G P G G A G P A+G +
Sbjct: 604 GPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTK 663
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G GP +G A PP GA G A GA G P G
Sbjct: 664 GPVGEQ--GPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSG 721
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
PP A P
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGET 753
Score = 39.3 bits (92), Expect = 0.003
Identities = 36/153 (23%), Positives = 41/153 (26%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G A + G G G G P G G+P G EG
Sbjct: 331 GVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLP 390
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P GP G A P +G G P A GAP +G A+
Sbjct: 391 GIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQ 450
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P A P P P
Sbjct: 451 GPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPA 483
Score = 38.9 bits (91), Expect = 0.004
Identities = 36/128 (28%), Positives = 40/128 (31%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G+ A G A G P A GAP G G G GA G
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERG 634
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P GP A G P A+ +G +G P A G A G
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAG 694
Query: 458 AEGAPAPP 465
G P
Sbjct: 695 PRGDAGPT 702
Score = 38.9 bits (91), Expect = 0.005
Identities = 32/166 (19%), Positives = 36/166 (21%), Gaps = 7/166 (4%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G G P + G P A+G G + G G G G P
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPG 364
Query: 399 AEGAP-------APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
G G G P + P G G G P
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPG 424
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
G G P P E A P
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGP 470
Score = 38.5 bits (90), Expect = 0.005
Identities = 42/160 (26%), Positives = 48/160 (30%), Gaps = 1/160 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ G GE A G G G P + G P G GAP G P + G
Sbjct: 743 DQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERG 802
Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G E GP G P A PP G P GAP A P +G P +G P
Sbjct: 803 LPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPG 862
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+G P P P A
Sbjct: 863 HKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGA 902
Score = 38.5 bits (90), Expect = 0.006
Identities = 35/157 (22%), Positives = 40/157 (25%), Gaps = 2/157 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G GA G G P G G A GAP +G A+G P +
Sbjct: 397 GPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQ 456
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G G G P + P G G P G A G G
Sbjct: 457 GVQGEK--GEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPG 514
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P + P D E A
Sbjct: 515 ERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGA 551
Score = 38.2 bits (89), Expect = 0.006
Identities = 32/125 (25%), Positives = 36/125 (28%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G GE G A G G+ G P +G GA GAP G P
Sbjct: 502 GPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIP 561
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G G P +G A GA +GA AP G G G
Sbjct: 562 GERGVA--GVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAG 619
Query: 461 APAPP 465
P
Sbjct: 620 PAGPA 624
Score = 37.4 bits (87), Expect = 0.013
Identities = 40/163 (24%), Positives = 43/163 (26%), Gaps = 4/163 (2%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P G + G G +G A G A G G P G G
Sbjct: 515 ERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKG 574
Query: 399 AEGAPAPP----AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
+GAP A G A G P A P G G PA A A G G
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERG 634
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P G A P E P P
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGP 677
Score = 36.6 bits (85), Expect = 0.019
Identities = 36/125 (28%), Positives = 39/125 (31%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE GE G A G G A G G+ G P +G GA
Sbjct: 490 GERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA 549
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GAP P GPP G P +G A G A G P A GAP G
Sbjct: 550 GAPGPA--GPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAG 607
Query: 461 APAPP 465
Sbjct: 608 GAGDR 612
Score = 36.6 bits (85), Expect = 0.019
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G P P+G G P G G +G GAP +G P A G G
Sbjct: 74 ERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKG 133
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
A G P G P GA ++ G G+ P AP +G G P
Sbjct: 134 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 193
Query: 458 AEGAPAPP 465
G P
Sbjct: 194 PAGPAGPR 201
Score = 36.6 bits (85), Expect = 0.021
Identities = 37/153 (24%), Positives = 38/153 (24%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G G G +GAP G A G A G P A GAP G
Sbjct: 553 GPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDR 612
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P GP A G P G G A A G G
Sbjct: 613 GEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPV 672
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P P P A
Sbjct: 673 GPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMT 705
Score = 36.6 bits (85), Expect = 0.023
Identities = 37/159 (23%), Positives = 41/159 (25%), Gaps = 1/159 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GEP G G+P G EG G G G GA G
Sbjct: 361 GEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPT 420
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P P +G GA A P GA G G P +G P
Sbjct: 421 GEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPA 480
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G + P E PP E A
Sbjct: 481 GPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAA 519
Score = 36.2 bits (84), Expect = 0.024
Identities = 35/134 (26%), Positives = 41/134 (30%), Gaps = 1/134 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G G+ G P G+ G G P A G P G P GAP
Sbjct: 784 GLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEA 843
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P +GPP +G P + G GA P P G G A
Sbjct: 844 GRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAV 903
Query: 460 GAPAPPAEGAPAPP 473
G P+ P
Sbjct: 904 GPAGAVGPRGPSGP 917
Score = 36.2 bits (84), Expect = 0.025
Identities = 32/158 (20%), Positives = 33/158 (20%), Gaps = 1/158 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G A G G G A G G P G G A G P A+
Sbjct: 598 GAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAK 657
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G G G G A G P A G P A G
Sbjct: 658 GERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPP 717
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
G P A E
Sbjct: 718 GPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGA 755
Score = 36.2 bits (84), Expect = 0.028
Identities = 29/125 (23%), Positives = 35/125 (28%), Gaps = 2/125 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G G G+ G G P G P + G P A+G G +
Sbjct: 283 GAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSR 342
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P G G P G G+P A G P +G P G
Sbjct: 343 GTSGPA--GVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 400
Query: 461 APAPP 465
P
Sbjct: 401 PAGPR 405
Score = 35.9 bits (83), Expect = 0.032
Identities = 35/154 (22%), Positives = 41/154 (26%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G +GE+ G P A G P G EG + G G P G G+
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRG 325
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
GA G G+ P G G P G+P G
Sbjct: 326 LPGADGVA--GVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGK 383
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
EG P P A P P
Sbjct: 384 EGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPK 417
Score = 35.9 bits (83), Expect = 0.037
Identities = 41/153 (26%), Positives = 45/153 (29%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G A GA G A G P G P GA A GA G P G+
Sbjct: 217 GNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGES 276
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P A G P G E + G G P P P + G P A+G
Sbjct: 277 GNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVM 336
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G PA P P
Sbjct: 337 GPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPR 369
Score = 35.9 bits (83), Expect = 0.037
Identities = 44/153 (28%), Positives = 53/153 (34%), Gaps = 1/153 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G A +G P A+GA G A G P G P GA A GA G P
Sbjct: 211 GPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA 270
Query: 401 GAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G+ +G P A G P P EG + G PA P G P + G P A+
Sbjct: 271 GSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGAD 330
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G + A + P P
Sbjct: 331 GVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEP 363
Score = 35.9 bits (83), Expect = 0.039
Identities = 34/148 (22%), Positives = 42/148 (28%), Gaps = 3/148 (2%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
+ G P G G P + G G G P +G P G G A G P
Sbjct: 356 DSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPG 415
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+G P G P +G A G GA P +G G P
Sbjct: 416 PKGPTGEP--GKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGF 473
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPP 486
+G P P A G +
Sbjct: 474 QGLPGPAGP-AGEAGKPGERGLHGEFGL 500
Score = 35.1 bits (81), Expect = 0.057
Identities = 37/152 (24%), Positives = 43/152 (28%), Gaps = 2/152 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G +G G P G A G P G +G P G P G P +GA
Sbjct: 28 GPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFP 87
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P P G G + GAP +G P P +GA G G
Sbjct: 88 GTPGLP--GFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVG 145
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
AP P P P
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 177
Score = 35.1 bits (81), Expect = 0.058
Identities = 39/159 (24%), Positives = 41/159 (25%), Gaps = 2/159 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G G GAP G A G A G P A GAP G G G
Sbjct: 563 ERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAG 622
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
GA G G GA GA +G +G A
Sbjct: 623 PAGARGIR--GERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGA 680
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
G P P PA P A P P
Sbjct: 681 AGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGP 719
Score = 35.1 bits (81), Expect = 0.069
Identities = 31/128 (24%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
E G G A G P G P GAP G G G G G P
Sbjct: 812 EPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPG 871
Query: 399 AEGAPAPP-AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P GP G P GA GA P + G G
Sbjct: 872 NAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKG 931
Query: 458 AEGAPAPP 465
+G
Sbjct: 932 DKGIKGDR 939
Score = 34.7 bits (80), Expect = 0.075
Identities = 33/127 (25%), Positives = 36/127 (28%), Gaps = 2/127 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G G G + G P GAP +G G P G G G
Sbjct: 152 ARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSG 211
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
G P GP GA A P GAP G A A GA G P
Sbjct: 212 PVGPPGNA--GPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 269
Query: 459 EGAPAPP 465
G+
Sbjct: 270 AGSKGES 276
Score = 34.3 bits (79), Expect = 0.094
Identities = 37/154 (24%), Positives = 41/154 (26%), Gaps = 2/154 (1%)
Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
G P +G G G P G G P GA G P GA G
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIG 526
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+ G PP GP +G A P A G G P A P +G A G
Sbjct: 527 SRGPSGPP--GPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGD 584
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
GA E P
Sbjct: 585 TGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPA 618
Score = 33.2 bits (76), Expect = 0.27
Identities = 32/126 (25%), Positives = 36/126 (28%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P G GA G P G G +G GAP +G P A G
Sbjct: 70 GRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTP 129
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP-AEGAPRAEGAPPAE 459
G P A PA G+ PP GAP +G
Sbjct: 130 GQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPV 189
Query: 460 GAPAPP 465
G P P
Sbjct: 190 GNPGPA 195
Score = 32.4 bits (74), Expect = 0.48
Identities = 45/157 (28%), Positives = 51/157 (32%), Gaps = 8/157 (5%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P G+A DG P G P G P +GA G P G G +G
Sbjct: 52 GPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQP 111
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GAP G P A G A G P G GAP P GA ++G+ G
Sbjct: 112 GAPGVK--GEPGAPGENGTPGQKGARGLPGERGRV----GAPGPA--GARGSDGSVGPVG 163
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P P P P P A P
Sbjct: 164 PAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGP 200
Score = 32.0 bits (73), Expect = 0.59
Identities = 32/128 (25%), Positives = 39/128 (30%), Gaps = 2/128 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G A A G G G G +G G +G P G +
Sbjct: 898 GPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQ 957
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
GAP GP G P G A G A + ++G G P G
Sbjct: 958 GAPGAV--GPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPG 1015
Query: 461 APAPPAEG 468
P PP+ G
Sbjct: 1016 PPGPPSGG 1023
Score = 31.2 bits (71), Expect = 0.84
Identities = 37/144 (25%), Positives = 45/144 (31%), Gaps = 3/144 (2%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G G G ++G +G P A G P G EG + G G P
Sbjct: 256 GATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPP 315
Query: 401 GAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP--AEGAPAPPAEGAPRAEGAPP 457
G P + G P A+G P + G G P G P P PR P
Sbjct: 316 GLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSP 375
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPP 481
PA P +G P P
Sbjct: 376 GNIGPAGKEGPVGLPGIDGRPGPI 399
Score = 28.9 bits (65), Expect = 4.6
Identities = 38/126 (30%), Positives = 40/126 (31%), Gaps = 1/126 (0%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
G P P G G P A GAP +G G P G GA G P G
Sbjct: 7 GGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHP 66
Query: 401 GAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
G P P E G P +GA P G G P A G GAP
Sbjct: 67 GKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGEN 126
Query: 460 GAPAPP 465
G P
Sbjct: 127 GTPGQK 132
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 43.3 bits (101), Expect = 1e-04
Identities = 29/88 (32%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P GA A+ P A A APA A A E AP A P AE PA
Sbjct: 295 PLYGAQMAKDYPGL--YKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA 352
Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPPAE 499
GA PA A AP A+
Sbjct: 353 AAEPGAAEAAGSVEPAPVEEVAPAPAAQ 380
Score = 41.4 bits (96), Expect = 4e-04
Identities = 32/84 (38%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 356 PAEGAPPAEGAPPAEG-APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
P GA A+ P A E P + A A A E AP A P AE P A
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPA 438
AEA E AP E APAPA
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPAPA 378
Score = 41.0 bits (95), Expect = 6e-04
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAE--GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P GA A+ P + A A AP +E AP A AP A P AE PA
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354
Query: 482 ADAPPAEPAPPAEAPPAESAPA 503
AP E APA
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPA 376
Score = 40.6 bits (94), Expect = 9e-04
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P GA A+ P A A A A APA+ PA A A
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354
Query: 452 AEG--APPAEGAPAPPAEGAPAPPAE 475
G PAP E APAP A+
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPAPAAQ 380
Score = 36.0 bits (82), Expect = 0.023
Identities = 22/90 (24%), Positives = 24/90 (26%), Gaps = 3/90 (3%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
P GA A+ P A A A E P A A
Sbjct: 295 PLYGAQMAKDYPGLYKTAVT---QEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVP 351
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
GA A G+ PA PA A R
Sbjct: 352 AAAEPGAAEAAGSVEPAPVEEVAPAPAAQR 381
Score = 35.2 bits (80), Expect = 0.038
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG--APPAEGAPPAEGAPPAEGA 390
+ E + A A A E AP A P AE P A AE A
Sbjct: 303 KDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Query: 391 PPAEGAPAAEGAPAPPAE 408
E AP E APAP A+
Sbjct: 363 GSVEPAPVEEVAPAPAAQ 380
Score = 34.1 bits (77), Expect = 0.11
Identities = 17/64 (26%), Positives = 18/64 (28%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
A E P + A A A E AP A A A E P
Sbjct: 312 AVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVE 371
Query: 414 EGAP 417
E AP
Sbjct: 372 EVAP 375
Score = 33.7 bits (76), Expect = 0.11
Identities = 16/63 (25%), Positives = 18/63 (28%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
+ P + A A A E AP A A P A PAP E
Sbjct: 313 VTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEE 372
Query: 409 GPP 411
P
Sbjct: 373 VAP 375
Score = 33.7 bits (76), Expect = 0.13
Identities = 20/76 (26%), Positives = 26/76 (34%)
Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
K+ K E P A++A+ + P P E P E VP EP
Sbjct: 302 AKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEA 361
Query: 268 VEEIPPTPPSPVTPNP 283
+ P P V P P
Sbjct: 362 AGSVEPAPVEEVAPAP 377
Score = 33.7 bits (76), Expect = 0.15
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
G A A A PA+ P AE P A AAE A +
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 406 PAEGPPPAEGAPPAEA 421
P P E PA A
Sbjct: 366 E---PAPVEEVAPAPA 378
Score = 32.2 bits (72), Expect = 0.37
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 201 KEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPP 260
K+ + + P E P +AT+A+ +E P E E
Sbjct: 303 KDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVP-AAEAVPAAAEPGAAEA 361
Query: 261 EPEPEP-PVEEIPPTPPS 277
EP PVEE+ P P +
Sbjct: 362 AGSVEPAPVEEVAPAPAA 379
Score = 29.5 bits (65), Expect = 2.9
Identities = 13/69 (18%), Positives = 16/69 (23%), Gaps = 1/69 (1%)
Query: 199 AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLP-PEGEQPPVEEVP 257
+ P S P E A +V + P G V
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366
Query: 258 PPPEPEPEP 266
P P E P
Sbjct: 367 PAPVEEVAP 375
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 41.0 bits (96), Expect = 2e-04
Identities = 10/64 (15%), Positives = 15/64 (23%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G+ + P P P ++ P G PA G +G
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 443 APPA 446
Sbjct: 62 GSAG 65
Score = 39.9 bits (93), Expect = 4e-04
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
++ + PR P G A PA GAP AP
Sbjct: 2 GSSQHHHHHSSGLVPRG-SHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 496 PPAESAPA 503
+
Sbjct: 61 YGSAGTSV 68
Score = 39.5 bits (92), Expect = 6e-04
Identities = 8/64 (12%), Positives = 15/64 (23%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
++ G+ P G A PA + + P +
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Query: 479 APPA 482
A +
Sbjct: 64 AGTS 67
Score = 39.5 bits (92), Expect = 6e-04
Identities = 11/77 (14%), Positives = 14/77 (18%)
Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
G+ + P P G G G P G P G
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 425 AEGAPAAEGAPAPAEGA 441
+ G
Sbjct: 62 GSAGTSVTLQLDDGSGR 78
Score = 39.1 bits (91), Expect = 8e-04
Identities = 10/58 (17%), Positives = 12/58 (20%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
+ G+ P G G G P G PAP
Sbjct: 8 HHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65
Score = 38.3 bits (89), Expect = 0.002
Identities = 10/64 (15%), Positives = 15/64 (23%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
++ P P G G A PA G + +G +
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Query: 453 EGAP 456
G
Sbjct: 64 AGTS 67
Score = 36.8 bits (85), Expect = 0.005
Identities = 10/75 (13%), Positives = 17/75 (22%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+ G P G A PA + + PA G + G
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 438 AEGAPAPPAEGAPRA 452
+ + +
Sbjct: 62 GSAGTSVTLQLDDGS 76
Score = 36.4 bits (84), Expect = 0.007
Identities = 11/68 (16%), Positives = 15/68 (22%), Gaps = 1/68 (1%)
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
G+ + P P G P + P G PAP
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGG-GYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 475 EGAPAPPA 482
G+
Sbjct: 61 YGSAGTSV 68
Score = 35.6 bits (82), Expect = 0.011
Identities = 6/62 (9%), Positives = 15/62 (24%)
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
++ + G+ +G + + PA G + +G
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Query: 473 PA 474
Sbjct: 64 AG 65
Score = 35.3 bits (81), Expect = 0.019
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAP-PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
+++ + P P PA + AP G PAP G
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
Query: 457 PA 458
A
Sbjct: 63 SA 64
Score = 34.1 bits (78), Expect = 0.047
Identities = 13/77 (16%), Positives = 17/77 (22%), Gaps = 1/77 (1%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEG-APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
G + + P P G A PA + + PA G G
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 400 EGAPAPPAEGPPPAEGA 416
A G
Sbjct: 62 GSAGTSVTLQLDDGSGR 78
Score = 33.7 bits (77), Expect = 0.056
Identities = 7/64 (10%), Positives = 13/64 (20%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
+ + P + GAP + AP + G
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
Query: 455 APPA 458
+
Sbjct: 63 SAGT 66
Score = 33.3 bits (76), Expect = 0.066
Identities = 7/63 (11%), Positives = 12/63 (19%)
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
+ + P P G G + AP + +G
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
Query: 464 PPA 466
Sbjct: 63 SAG 65
Score = 33.3 bits (76), Expect = 0.088
Identities = 12/74 (16%), Positives = 16/74 (21%), Gaps = 7/74 (9%)
Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
+ P G A PA GAP G PAP +
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGY----AEPAGRDYDYGQSGAPDY---GQPAPGGYS 54
Query: 485 PPAEPAPPAEAPPA 498
+ +
Sbjct: 55 GYGQGGYGSAGTSV 68
Score = 32.9 bits (75), Expect = 0.11
Identities = 8/64 (12%), Positives = 9/64 (14%), Gaps = 3/64 (4%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
+ P G G G A P G A
Sbjct: 8 HHHSSGLVPRGSH---MPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64
Query: 422 PPPA 425
Sbjct: 65 GTSV 68
Score = 32.2 bits (73), Expect = 0.21
Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 2/74 (2%)
Query: 338 TEGGEPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
++ G P P G A PA + + PA G G
Sbjct: 4 SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Query: 396 APAAEGAPAPPAEG 409
A + G
Sbjct: 64 AGTSVTLQLDDGSG 77
Score = 29.9 bits (67), Expect = 1.2
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
S G P+G A PA + + PA G G
Sbjct: 7 HHHHSSGLVPRGSHMPQGGGYA---EPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
Query: 390 APPA 393
A +
Sbjct: 64 AGTS 67
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/97 (16%), Positives = 20/97 (20%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
E D + + A + E PA A+ A
Sbjct: 194 PWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ 253
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
P A P E AA A A
Sbjct: 254 VPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGT 290
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/100 (18%), Positives = 21/100 (21%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
P E P E E A + E A P P
Sbjct: 194 PWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ 253
Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
P+ P E A P+ A A E
Sbjct: 254 VPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTTE 293
Score = 38.5 bits (89), Expect = 0.003
Identities = 14/92 (15%), Positives = 18/92 (19%)
Query: 325 VKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 384
R E E + + P A E A +EG
Sbjct: 199 PDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVPSVP 258
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
P+ E A P G
Sbjct: 259 IQQFPTEDWSAQPSTEDWSAAPTAQATEWVGT 290
Score = 37.4 bits (86), Expect = 0.008
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAE-GAPPAEGAPPAEGAPPAEGAPPA 393
+ + E + E +A A+ A E AP E A E A +EG + P
Sbjct: 202 YFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVP--SVPI 259
Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAE 420
+ P + + P E A A E
Sbjct: 260 QQFPTEDWSAQPSTEDWSAAPTAQATE 286
Score = 37.0 bits (85), Expect = 0.009
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P E AE A E APA E A P P+
Sbjct: 197 VMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVPS 256
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
P P+ + + AP A+
Sbjct: 257 -VPIQQFPTEDWSAQPSTEDWSAAPTAQAT 285
Score = 36.6 bits (84), Expect = 0.014
Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA-PPAEAPPPAEGAPAAE 432
P E P E E A A + +G A A P A+ + +
Sbjct: 194 PWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ 253
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P + P P E A A A G
Sbjct: 254 VPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTT 292
Score = 36.6 bits (84), Expect = 0.014
Identities = 14/103 (13%), Positives = 18/103 (17%)
Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
P E P E E A + E A P
Sbjct: 184 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQP 243
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P +A+ + AP A
Sbjct: 244 EVADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATE 286
Score = 36.6 bits (84), Expect = 0.015
Identities = 13/101 (12%), Positives = 19/101 (18%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
G E P A + E PA A+
Sbjct: 185 MRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPE 244
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
A P + + + AP A+
Sbjct: 245 VADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQAT 285
Score = 33.9 bits (77), Expect = 0.089
Identities = 14/91 (15%), Positives = 19/91 (20%), Gaps = 3/91 (3%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P E P E E A A + A A+ +
Sbjct: 194 PWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ 253
Query: 466 AEGAPAPPAEG---APAPPADAPPAEPAPPA 493
P + P + A P A
Sbjct: 254 VPSVPIQQFPTEDWSAQPSTEDWSAAPTAQA 284
Score = 28.1 bits (62), Expect = 5.9
Identities = 15/68 (22%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P E P P A + APAP A E A +E
Sbjct: 193 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTK-EEFQGEWTAPAPEFTAAQPEVADWSEG 251
Query: 496 PPAESAPA 503
S P
Sbjct: 252 VQVPSVPI 259
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 41.8 bits (97), Expect = 2e-04
Identities = 20/136 (14%), Positives = 29/136 (21%), Gaps = 3/136 (2%)
Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
+ P G P +G+P PP G + G P G G
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
P P +G + GA A G
Sbjct: 62 WGQ---PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYM 118
Query: 464 PPAEGAPAPPAEGAPA 479
+ + G+
Sbjct: 119 LGSAMSRPLIHFGSDY 134
Score = 41.8 bits (97), Expect = 2e-04
Identities = 14/126 (11%), Positives = 16/126 (12%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
P P P P G
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G P G G P+ P A
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121
Query: 493 AEAPPA 498
A + P
Sbjct: 122 AMSRPL 127
Score = 41.4 bits (96), Expect = 3e-04
Identities = 20/118 (16%), Positives = 24/118 (20%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
GG P G+P PP G + G P G G +
Sbjct: 10 GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 69
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P + P GA A A P
Sbjct: 70 WGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPL 127
Score = 40.2 bits (93), Expect = 7e-04
Identities = 19/131 (14%), Positives = 24/131 (18%), Gaps = 1/131 (0%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE-GAP 417
P G P +G+P PP G + G P G P
Sbjct: 5 RPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P G P A A G + +
Sbjct: 65 PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMS 124
Query: 478 PAPPADAPPAE 488
E
Sbjct: 125 RPLIHFGSDYE 135
Score = 37.5 bits (86), Expect = 0.005
Identities = 19/108 (17%), Positives = 22/108 (20%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
P G G P G G + G P G G
Sbjct: 28 NRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQ 87
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P+ P GA A A G A + E
Sbjct: 88 WNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYE 135
Score = 35.6 bits (81), Expect = 0.024
Identities = 12/125 (9%), Positives = 16/125 (12%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
P P P
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
G P G P G G + + A A A +
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121
Query: 499 ESAPA 503
+
Sbjct: 122 AMSRP 126
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 43.0 bits (101), Expect = 2e-04
Identities = 19/77 (24%), Positives = 26/77 (33%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P E P + A APA A PA A A P + AP + A
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRA 153
Query: 472 PPAEGAPAPPADAPPAE 488
A+ + PP++
Sbjct: 154 LVAQKLKKELTEIPPSK 170
Score = 41.8 bits (98), Expect = 5e-04
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P E P A A A+ P A A PA APA+ G AP + AP +
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149
Score = 41.8 bits (98), Expect = 6e-04
Identities = 17/58 (29%), Positives = 22/58 (37%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
+ P + P A ++ A A P A A PA AP A A + AP A
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 41.5 bits (97), Expect = 6e-04
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
+ P E P P A + A A AP A APAP + G AP DAP
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 41.5 bits (97), Expect = 7e-04
Identities = 22/71 (30%), Positives = 25/71 (35%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
E P PA + A A A A A PA PA PA P + AP D A
Sbjct: 95 IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRAL 154
Query: 489 PAPPAEAPPAE 499
A + E
Sbjct: 155 VAQKLKKELTE 165
Score = 41.5 bits (97), Expect = 7e-04
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P E P P A + A A AP A A PA PA A +AP
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140
Score = 40.3 bits (94), Expect = 0.002
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+ P + P A + A PA APA PA AP PA A P + AP
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPA--APAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 39.5 bits (92), Expect = 0.003
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
P + A P A APAA APAPA PA P + AP
Sbjct: 96 EDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 38.8 bits (90), Expect = 0.005
Identities = 16/55 (29%), Positives = 19/55 (34%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
E P A + APA PA A AP A PA P + P +
Sbjct: 96 EDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150
Score = 38.4 bits (89), Expect = 0.007
Identities = 15/55 (27%), Positives = 19/55 (34%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
+ P + P A + A PA A A PA P A A P + P
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 38.0 bits (88), Expect = 0.008
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P E P A A+ AP A PA A AP PA PAA AP
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAP-APAPASAGPAAPVQDAPVTATDVIR 152
Query: 446 A 446
A
Sbjct: 153 A 153
Score = 37.2 bits (86), Expect = 0.013
Identities = 14/59 (23%), Positives = 19/59 (32%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
+ +P + P A A A A PA A PA PA + A +
Sbjct: 91 DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149
Score = 36.8 bits (85), Expect = 0.017
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
E P A A+ AP A A PA A APA+ G AP + P A
Sbjct: 95 IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 36.5 bits (84), Expect = 0.027
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
E P A A+ AP A A PA A A APA P + A
Sbjct: 95 IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 35.3 bits (81), Expect = 0.051
Identities = 15/54 (27%), Positives = 18/54 (33%)
Query: 222 EPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTP 275
E EPE A+ D P P P P P PV++ P T
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 31.1 bits (70), Expect = 1.3
Identities = 11/53 (20%), Positives = 14/53 (26%)
Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
+E E A A PA A PA PA + +
Sbjct: 97 DEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 41.5 bits (97), Expect = 8e-04
Identities = 19/59 (32%), Positives = 21/59 (35%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
P A E A AP + PA APAP A APA A EP +
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150
Score = 41.5 bits (97), Expect = 8e-04
Identities = 14/55 (25%), Positives = 15/55 (27%)
Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
P+ P E AP A A A A A A AD P
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 40.7 bits (95), Expect = 0.001
Identities = 14/48 (29%), Positives = 15/48 (31%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
E A + APA A AP A AP A A P
Sbjct: 97 LAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 40.7 bits (95), Expect = 0.001
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
P A A A A APAPA APAP A AP A A A+ P +
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIAD-EPVKAS 148
Query: 467 EGAPAPPAEGAPAPPADAPPAE 488
A P ++
Sbjct: 149 LLLHVLVAHKLKKSLDSIPMSK 170
Score = 40.0 bits (93), Expect = 0.002
Identities = 16/56 (28%), Positives = 18/56 (32%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P+E A E A P A PA A P A A A A P +
Sbjct: 94 PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149
Score = 40.0 bits (93), Expect = 0.002
Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 10/82 (12%)
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P+E E A AP PA APAP A A A A A A
Sbjct: 94 PSELAAKEEPAKEEAPAPTPAASAPAP----------AAAAPAPVAAAAPAAAAAEIADE 143
Query: 478 PAPPADAPPAEPAPPAEAPPAE 499
P + A +
Sbjct: 144 PVKASLLLHVLVAHKLKKSLDS 165
Score = 39.6 bits (92), Expect = 0.003
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
P+E A AP A + PA A A A AP A +A
Sbjct: 94 PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAE 139
Score = 39.2 bits (91), Expect = 0.004
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG-APAPPAEGPPPAEGAPPAEAPPPA 425
P A A PA APA APAP A P A A A+ P A
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147
Score = 39.2 bits (91), Expect = 0.004
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P A+ P E APAP + PA APAP A A PA A P +++
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150
Score = 38.4 bits (89), Expect = 0.006
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
P P A AP PA + A A APA A A PA A P
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAA-SAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 37.6 bits (87), Expect = 0.011
Identities = 15/48 (31%), Positives = 15/48 (31%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
E E PA P A PA A A AAE A P
Sbjct: 97 LAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 37.6 bits (87), Expect = 0.011
Identities = 16/55 (29%), Positives = 16/55 (29%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
P A A A APAP A P P A PA A P
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 37.6 bits (87), Expect = 0.011
Identities = 14/49 (28%), Positives = 14/49 (28%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
A E AP A PA A A A A A A P
Sbjct: 96 ELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 37.3 bits (86), Expect = 0.015
Identities = 12/58 (20%), Positives = 14/58 (24%)
Query: 442 PAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
P P A A + APA A A A A A +
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149
Score = 37.3 bits (86), Expect = 0.016
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
+ + A PA+ PA A+ APA A P A A A E A+
Sbjct: 93 DPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149
Score = 36.9 bits (85), Expect = 0.019
Identities = 16/57 (28%), Positives = 20/57 (35%)
Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
+ E + E + AP A A A AP A AP A A A+ A
Sbjct: 91 TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147
Score = 36.5 bits (84), Expect = 0.025
Identities = 10/46 (21%), Positives = 13/46 (28%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P+ A E PA + PA A A + A
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAA 135
Score = 36.5 bits (84), Expect = 0.026
Identities = 13/53 (24%), Positives = 14/53 (26%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P A PA APA A AP A A+ A
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147
Score = 36.1 bits (83), Expect = 0.033
Identities = 13/53 (24%), Positives = 14/53 (26%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P A PA AP A A A A A+ P A
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147
Score = 35.7 bits (82), Expect = 0.047
Identities = 12/59 (20%), Positives = 14/59 (23%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
P P A + E P A A A A A E A+
Sbjct: 91 TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149
Score = 35.3 bits (81), Expect = 0.050
Identities = 14/55 (25%), Positives = 16/55 (29%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
A PA A P A AP A A P A A A+ +
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASL 149
Score = 31.9 bits (72), Expect = 0.68
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 323 SVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 382
KD + + +E + + A PA AP A PA A A
Sbjct: 80 CYSKDAKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPA--PVAAAAPAAAA 137
Query: 383 GAPPAEGAPPAE 394
E +
Sbjct: 138 AEIADEPVKASL 149
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 40.5 bits (94), Expect = 8e-04
Identities = 22/112 (19%), Positives = 29/112 (25%)
Query: 326 KDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
+ T+ + + E + + AE A PA E
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGT 249
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
A P A A A A PA + A AP AP P
Sbjct: 250 DAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPTP 301
Score = 39.0 bits (90), Expect = 0.003
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
A+ A P GA A P A+ G A A+ A P GA A PA
Sbjct: 214 AKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGAD--WTAAPA 271
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
A APAP E AP A P
Sbjct: 272 PAAGGWDTAAAPAPGWEQGSAPVPAAAPTP 301
Score = 37.4 bits (86), Expect = 0.007
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
+ A P GA APAA+ E A P A AA
Sbjct: 217 QEEEEAALVAPDYGAVAEYAAPAADTW---GGEWGTDAAAQPAAIPAQAGADWTAAPAPA 273
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
A A PA G AP AP P
Sbjct: 274 AGGWDTAAAPAPGWE-QGSAPVPAAAPTP 301
Score = 36.7 bits (84), Expect = 0.012
Identities = 25/95 (26%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP 465
P E E AP A A A G A P A A A P
Sbjct: 211 PEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAP 270
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
APA A PA AP A P +
Sbjct: 271 ---APAAGGWDTAAAPAPGWEQGSAPVPAAAPTPN 302
Score = 36.7 bits (84), Expect = 0.013
Identities = 24/94 (25%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P A+ EA A A APA G + A PA
Sbjct: 211 PEEAKEQEEEEAALVAPDYGAVAEYAAPAA----DTWGGEWGTDAAAQPAAIPAQAGADW 266
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A PA A A PA AP +AP
Sbjct: 267 TAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPT 300
Score = 34.4 bits (78), Expect = 0.079
Identities = 21/87 (24%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPP 423
E + AE A PA E A PA A PA A
Sbjct: 216 EQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAPAPAAG 275
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAP 450
+ A A AP P A P
Sbjct: 276 GWDTAAAPAPG-WEQGSAPVPAAAPTP 301
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 41.0 bits (95), Expect = 8e-04
Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P + PP + GA P A AE A A +PA +P G
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG-GGGF 77
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A A + G A
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113
Score = 40.6 bits (94), Expect = 0.001
Identities = 15/99 (15%), Positives = 20/99 (20%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P PP A A + A+ AP+P + G
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
+ A A A A R
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
Score = 39.1 bits (90), Expect = 0.003
Identities = 18/97 (18%), Positives = 26/97 (26%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
P + PPP A A P + A A + A +PA P+ G+ G
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
+ A A + A
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 37.9 bits (87), Expect = 0.006
Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 5/101 (4%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
P + P P+A A P AE A A A +P +
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVA-----SPAAPSPGSSG 73
Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
G + + A + G G A
Sbjct: 74 GGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 37.9 bits (87), Expect = 0.006
Identities = 20/103 (19%), Positives = 27/103 (26%)
Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
+D A PP + + GA P A AE A A +P A P
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
+ G + A A A +E
Sbjct: 70 GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112
Score = 37.1 bits (85), Expect = 0.012
Identities = 15/95 (15%), Positives = 21/95 (22%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
+ PP A + P A A A P +P + G
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
+ A A + G G A
Sbjct: 80 SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 34.4 bits (78), Expect = 0.082
Identities = 15/86 (17%), Positives = 19/86 (22%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
PP + + GA P A +AE A P A + A
Sbjct: 27 QRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVK 86
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAE 459
A A G
Sbjct: 87 QTTAAAAATFSEQVGGGSGGAGRGGA 112
Score = 33.7 bits (76), Expect = 0.12
Identities = 17/93 (18%), Positives = 25/93 (26%)
Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
+ PPP A + P A + + AP A A P+ G+ +
Sbjct: 21 GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A A +E A
Sbjct: 81 LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113
Score = 33.7 bits (76), Expect = 0.16
Identities = 15/99 (15%), Positives = 22/99 (22%), Gaps = 2/99 (2%)
Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
+ P P PP A P +A + A A + AP +
Sbjct: 18 LPNGYMTDLQRPQPP--PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+ A A + A A
Sbjct: 76 GFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Score = 30.6 bits (68), Expect = 1.4
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 234 SDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
+++ +G T L PP P + +PV
Sbjct: 16 ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65
Score = 29.4 bits (65), Expect = 2.9
Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 2/102 (1%)
Query: 224 EPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
TD + P P P PSP +
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPSAASPGATP--GSAAASAERASTAAPVASPAAPSPGSSGG 74
Query: 284 EELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVV 325
+ L + V + + E++ + + V
Sbjct: 75 GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 40.4 bits (94), Expect = 0.001
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 1/126 (0%)
Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA-AEGAPAP 437
P + + ++ + P+E PP + A E AP + A
Sbjct: 16 PRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAPITTDATSAT 75
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A + + + A + A A + P
Sbjct: 76 VTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSDVVPF 135
Query: 498 AESAPA 503
Sbjct: 136 VRRTTD 141
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA
replication, phosphoprotein; 2.14A {Streptomyces
coelicolor}
Length = 199
Score = 37.6 bits (87), Expect = 0.004
Identities = 14/78 (17%), Positives = 18/78 (23%)
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
G +G G P + PA+ GAP G
Sbjct: 121 SGQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQGG 180
Query: 469 APAPPAEGAPAPPADAPP 486
G +D PP
Sbjct: 181 GGWGGGSGGGGGYSDEPP 198
Score = 33.7 bits (77), Expect = 0.087
Identities = 14/79 (17%), Positives = 17/79 (21%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
G G G G PA+ A GAPA +
Sbjct: 120 TSGQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQG 179
Query: 447 EGAPRAEGAPPAEGAPAPP 465
G + PP
Sbjct: 180 GGGWGGGSGGGGGYSDEPP 198
Score = 32.9 bits (75), Expect = 0.15
Identities = 14/79 (17%), Positives = 17/79 (21%), Gaps = 1/79 (1%)
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE-GAPAPPAEGAPAPP 473
+ G G P +G P A GAPA +G
Sbjct: 120 TSGQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQG 179
Query: 474 AEGAPAPPADAPPAEPAPP 492
G PP
Sbjct: 180 GGGWGGGSGGGGGYSDEPP 198
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 38.7 bits (90), Expect = 0.005
Identities = 19/212 (8%), Positives = 32/212 (15%), Gaps = 50/212 (23%)
Query: 242 TPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVS 301
LP + P S
Sbjct: 271 LDLPTRNGRYVDGLPEDDPVL----------------------------------KTYDS 296
Query: 302 IDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEE--TEGGEPKPEGEAPADGAPPAEG 359
L+ + + D +R + EE + E A G P
Sbjct: 297 YGRLLRRAID--------------PDPRQRFTTAEEMSAQLTGVLREVVAQDTGVPRPGL 342
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
+ + G + A
Sbjct: 343 STIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVAASVLQAT 402
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P + + A A A +
Sbjct: 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVE 434
Score = 31.7 bits (72), Expect = 0.63
Identities = 12/113 (10%), Positives = 18/113 (15%), Gaps = 9/113 (7%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPP--------AEAPPPAE-GAPAAEGAPAPAEGAPAPP 445
P G P A P P + A E +
Sbjct: 272 DLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVV 331
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
A+ +P+ G A +
Sbjct: 332 AQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTAL 384
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 35.9 bits (81), Expect = 0.028
Identities = 25/161 (15%), Positives = 34/161 (21%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
PK P+ P A PPA P + ++
Sbjct: 22 PPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPS 81
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P P P+ G ++ P A P A + R GA
Sbjct: 82 TPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALK 141
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
+ G P A A P
Sbjct: 142 ASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP 182
Score = 34.3 bits (77), Expect = 0.089
Identities = 18/130 (13%), Positives = 27/130 (20%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
P +P A A + + P +A PPA
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
+ P P A + G + PA + +
Sbjct: 75 DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134
Query: 494 EAPPAESAPA 503
A A A
Sbjct: 135 ARVRALKASA 144
Score = 33.6 bits (75), Expect = 0.18
Identities = 26/154 (16%), Positives = 32/154 (20%), Gaps = 6/154 (3%)
Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
P P P+ P A PPA PA E
Sbjct: 18 PRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEV 77
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
P+ P P+ G + PA + A+
Sbjct: 78 SSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARV 137
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A A P AE P E
Sbjct: 138 RALKA------SAQDAGESCTPEAEGRPEEPCGE 165
Score = 31.6 bits (70), Expect = 0.72
Identities = 32/160 (20%), Positives = 42/160 (26%), Gaps = 1/160 (0%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
R S P A P + PPA + + P
Sbjct: 28 RTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPD 87
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
PA +P + + PA G PP + + + A +
Sbjct: 88 IPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDA 147
Query: 451 RAEGAPPAEGAPAPP-AEGAPAPPAEGAPAPPADAPPAEP 489
P AEG P P E APA A A P P
Sbjct: 148 GESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLP 187
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 36.0 bits (83), Expect = 0.032
Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 10/141 (7%)
Query: 137 KDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSM 196
E ++ +V + K + + K + + + + + KK++ +
Sbjct: 640 FHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIV 699
Query: 197 ED-AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEE 255
++ K K K + + + D +T E E
Sbjct: 700 TILLKELKD----KIVSCKNQ-----HKATKGKECCDKLPKIADGDTSDDEEQEDEAPAP 750
Query: 256 VPPPPEPEPEPPVEEIPPTPP 276
P P P P V +
Sbjct: 751 PKPKPPSTPNPCVRKDQSGTH 771
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 35.2 bits (81), Expect = 0.048
Identities = 23/165 (13%), Positives = 34/165 (20%), Gaps = 13/165 (7%)
Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
E + + A PA A P +G A
Sbjct: 68 EVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVD 127
Query: 408 EGPPPA----EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE---------G 454
+ P +GA G PA + + + + +
Sbjct: 128 DYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLP 187
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
P A PP+ A P A PA
Sbjct: 188 EPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPAR 232
Score = 33.3 bits (76), Expect = 0.17
Identities = 15/136 (11%), Positives = 20/136 (14%), Gaps = 2/136 (1%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
A G + AP E A A P +
Sbjct: 55 VAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAV 114
Query: 420 EAPPPAEGAPAAEGAPAPA--EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
P + A A G P + +
Sbjct: 115 NRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASF 174
Query: 478 PAPPADAPPAEPAPPA 493
D P
Sbjct: 175 LTDLMDKHQVSLPEPV 190
Score = 31.3 bits (71), Expect = 0.71
Identities = 14/126 (11%), Positives = 22/126 (17%), Gaps = 4/126 (3%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE----GAPAAEG 433
A G + AP A P + G A
Sbjct: 55 VAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAV 114
Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
+G A + P A+ A P + +
Sbjct: 115 NRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASF 174
Query: 494 EAPPAE 499
+
Sbjct: 175 LTDLMD 180
Score = 30.2 bits (68), Expect = 1.6
Identities = 25/157 (15%), Positives = 32/157 (20%), Gaps = 10/157 (6%)
Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
GA A G P + A + + + + P E PP
Sbjct: 139 GATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPP 198
Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR-------AEGAPPAEGAPAPP 465
+ P GA PP P E GA P
Sbjct: 199 SLLLEAEPEGWFMRWVPYGGGAVLG---DRLPPVPARPEVAITMGTIELQAFGIGAVEPI 255
Query: 466 AEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A A+ A P P
Sbjct: 256 IAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion
related Pro cell WALL, NLPC-like module, hydrolase;
1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Length = 214
Score = 34.1 bits (78), Expect = 0.065
Identities = 19/84 (22%), Positives = 23/84 (27%), Gaps = 1/84 (1%)
Query: 416 APPAEAPPPAEGAPAAEGAPAPAE-GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
+ AE PA A AP + A A + A +
Sbjct: 1 SMDAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGG 60
Query: 475 EGAPAPPADAPPAEPAPPAEAPPA 498
A AP A A P A A A
Sbjct: 61 PAASAPSAATTGASRIPRANARQA 84
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 34.1 bits (79), Expect = 0.10
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 5 TPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKK 62
+ + + LE+LE +RA R ++ A+ +G +T ER
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARER-- 59
Query: 63 KLRLLL 68
+ LLL
Sbjct: 60 -VDLLL 64
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 34.2 bits (78), Expect = 0.11
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 201 KEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPP 260
K++ W + P+++ +P +P+ E + T ++
Sbjct: 223 KKEIFRWPESPKAQASSVPTAQPQAEGSL----AKATTAPATTRNTGRGGEEKKKEKEKE 278
Query: 261 EPEPEPPVEEIPPTPP-----SPVTPNPEELWLYLKDTVS 295
E E P+ +TP ++LWL K T +
Sbjct: 279 EQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT 318
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 33.5 bits (77), Expect = 0.16
Identities = 10/59 (16%), Positives = 13/59 (22%)
Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
+ A + A + A G A A G P A R
Sbjct: 256 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLH 314
Score = 30.8 bits (70), Expect = 1.1
Identities = 9/114 (7%), Positives = 17/114 (14%), Gaps = 3/114 (2%)
Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
P D A+ + + A A G A A +
Sbjct: 258 QPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDND 317
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
+ + + +G
Sbjct: 318 I---VLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/80 (11%), Positives = 16/80 (20%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P + +A+ A A +A + G P A
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDI 318
Query: 452 AEGAPPAEGAPAPPAEGAPA 471
+ A +
Sbjct: 319 VLDSANVSRHHAVIVDTGTN 338
Score = 30.1 bits (68), Expect = 1.8
Identities = 5/50 (10%), Positives = 6/50 (12%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P A + A A A
Sbjct: 257 QQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA 306
Score = 30.1 bits (68), Expect = 1.8
Identities = 7/106 (6%), Positives = 11/106 (10%), Gaps = 5/106 (4%)
Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P A A + + A A +
Sbjct: 257 QQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDN 316
Query: 449 A-----PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
+ G A
Sbjct: 317 DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVT 362
>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET:
GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1
c.47.1.5
Length = 249
Score = 32.8 bits (75), Expect = 0.17
Identities = 26/45 (57%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 449 APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
AP AEGAPPAEG PPAEGA G APPA+ PAEP +
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAE--PAEPIKHS 49
Score = 30.5 bits (69), Expect = 1.1
Identities = 18/45 (40%), Positives = 18/45 (40%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
A E PAEGAP E P AEGA A PA P
Sbjct: 2 ADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPI 46
Score = 30.1 bits (68), Expect = 1.3
Identities = 25/40 (62%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 410 PPPAEGAPPAE--APPPAEGAP-AAEGAPAPAEGAPAPPA 446
PPAEGAPPAE APPPAEGA A EG A PA P
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPI 46
Score = 30.1 bits (68), Expect = 1.5
Identities = 21/40 (52%), Positives = 21/40 (52%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
APPAEGAPPAEG P E APPAE A P
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPI 46
Score = 28.2 bits (63), Expect = 6.0
Identities = 20/38 (52%), Positives = 20/38 (52%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
APPAEGAPPAEG P E APPAE A
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAE 44
Score = 27.8 bits (62), Expect = 7.8
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 422 PPPAEGAPAAEG-APAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
PPAEGAP AEG AP PAEGA G P +
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY 50
Score = 27.4 bits (61), Expect = 9.0
Identities = 23/38 (60%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPA----EAPPPAEGAP 429
AP AEGAP E PPPAEGA A EA PPAE A
Sbjct: 7 APPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAE 44
Score = 27.4 bits (61), Expect = 9.1
Identities = 27/48 (56%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
APPAEGAPPAEG P PPAEGA A G APPAE P
Sbjct: 7 APPAEGAPPAEGEAP----PPAEGAEGA----VEGGEAAPPAEPAEPI 46
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 33.0 bits (74), Expect = 0.18
Identities = 10/92 (10%), Positives = 17/92 (18%)
Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
P + A P + + + P P
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285
Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
E+ P + E AP +
Sbjct: 286 RRSETESVNPVSTPASVEYHAGMKSLNKAPYS 317
Score = 31.1 bits (69), Expect = 0.78
Identities = 10/97 (10%), Positives = 17/97 (17%)
Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
+ EG P+ + A P + +
Sbjct: 218 IQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVP 277
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
+ E E P E + A
Sbjct: 278 FSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKA 314
Score = 29.1 bits (64), Expect = 3.8
Identities = 11/92 (11%), Positives = 18/92 (19%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
P + A + + + G+ P AP
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285
Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
E + A G AP +
Sbjct: 286 RRSETESVNPVSTPASVEYHAGMKSLNKAPYS 317
Score = 29.1 bits (64), Expect = 3.8
Identities = 9/90 (10%), Positives = 14/90 (15%)
Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
P + A P + + + G P
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
E + A AP
Sbjct: 286 RRSETESVNPVSTPASVEYHAGMKSLNKAP 315
Score = 28.4 bits (62), Expect = 5.6
Identities = 8/85 (9%), Positives = 11/85 (12%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
+ P + AP +
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPP 481
PA A AP
Sbjct: 294 NPVSTPASVEYHAGMKSLNKAPYSS 318
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 33.5 bits (77), Expect = 0.19
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV 279
+P+ + ++ + E+ + ++PP + PPP PEP +
Sbjct: 2 VPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLF 61
Query: 280 TPNPEELWL----YLKDTVSASNPVSIDDLVE 307
E L L S + L
Sbjct: 62 VDTAVEGTLPPLSLLDPAEVKQKSYSPESLEA 93
Score = 33.1 bits (76), Expect = 0.23
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 196 MEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEE 255
+ D ++ K + + + E E P D E E+
Sbjct: 2 VPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLF 61
Query: 256 VPPPPEPEPEPPVEEIPPTPPSPVTPNPEEL 286
V E PP+ + P + +PE L
Sbjct: 62 VDTAVEG-TLPPLSLLDPAEVKQKSYSPESL 91
Score = 32.0 bits (73), Expect = 0.55
Identities = 17/82 (20%), Positives = 27/82 (32%)
Query: 190 KKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGE 249
K +E +E E K +E K P P P+ S + + EG
Sbjct: 10 KAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVEGT 69
Query: 250 QPPVEEVPPPPEPEPEPPVEEI 271
PP+ + P + E +
Sbjct: 70 LPPLSLLDPAEVKQKSYSPESL 91
Score = 30.0 bits (68), Expect = 2.3
Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 3/87 (3%)
Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
P E A + E P P + P + P++
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62
Query: 472 PPAEGAPAPPAD---APPAEPAPPAEA 495
A PP + +
Sbjct: 63 DTAVEGTLPPLSLLDPAEVKQKSYSPE 89
Score = 28.5 bits (64), Expect = 6.0
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 2/90 (2%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
P E A + PP PPP+ AP E + + AP
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAP--EPSKRVLKEKQAPL 60
Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
PP + P
Sbjct: 61 FVDTAVEGTLPPLSLLDPAEVKQKSYSPES 90
Score = 28.1 bits (63), Expect = 7.8
Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 4/92 (4%)
Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
P + E + + PPP P + AP P++ +
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSK----RVLKEKQA 58
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
A PP + P
Sbjct: 59 PLFVDTAVEGTLPPLSLLDPAEVKQKSYSPES 90
Score = 28.1 bits (63), Expect = 8.8
Identities = 11/83 (13%), Positives = 16/83 (19%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
E E E + + P + P+P A + A
Sbjct: 7 EQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAV 66
Query: 468 GAPAPPAEGAPAPPADAPPAEPA 490
PP P
Sbjct: 67 EGTLPPLSLLDPAEVKQKSYSPE 89
Score = 27.7 bits (62), Expect = 9.2
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 191 KREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQ 250
+RE S ++ E + + S++++ P P+ +P P KE P +
Sbjct: 5 RREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDT 64
Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTP 275
+PP +P V++ +P
Sbjct: 65 AVEGTLPPLSLLDP-AEVKQKSYSP 88
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 32.3 bits (73), Expect = 0.19
Identities = 14/79 (17%), Positives = 17/79 (21%), Gaps = 1/79 (1%)
Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
A+ P E E E + E
Sbjct: 83 SADNVIPKTFKASNVNFISKEE-DEEERPRRQFNKGGRTGERDGRNKRGVGRGTRREGEE 141
Query: 428 APAAEGAPAPAEGAPAPPA 446
A EGA A+G PA
Sbjct: 142 AAKEEGAAETAQGNQETPA 160
Score = 28.1 bits (62), Expect = 4.7
Identities = 6/80 (7%), Positives = 11/80 (13%), Gaps = 1/80 (1%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
A+ P + + E + E +
Sbjct: 83 SADNVIPKTFKASNVNFISKE-EDEEERPRRQFNKGGRTGERDGRNKRGVGRGTRREGEE 141
Query: 446 AEGAPRAEGAPPAEGAPAPP 465
A A
Sbjct: 142 AAKEEGAAETAQGNQETPAQ 161
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 33.0 bits (74), Expect = 0.19
Identities = 11/81 (13%), Positives = 14/81 (17%)
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
+ G A A ++ P P A
Sbjct: 10 HSSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDA 69
Query: 480 PPADAPPAEPAPPAEAPPAES 500
DA P A P
Sbjct: 70 AFRDAKGLHGHQPWVATPLPG 90
Score = 28.8 bits (63), Expect = 4.0
Identities = 10/64 (15%), Positives = 13/64 (20%)
Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
G A +++ A G PP A P
Sbjct: 27 QLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRDAKGLHGHQPWVAT 86
Query: 470 PAPP 473
P P
Sbjct: 87 PLPG 90
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 32.9 bits (74), Expect = 0.23
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 239 GKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNP 283
P P P + + +P PV P+P P
Sbjct: 305 AIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 32.1 bits (72), Expect = 0.39
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
A G P AP P + PAP A + EP PP + P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 30.9 bits (69), Expect = 0.89
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 251 PPVEEVPPP-PEPEPEPPVEEIPPTPPSPVTPNPE 284
PV P P E E P+E P P P P
Sbjct: 311 KPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345
Score = 29.4 bits (65), Expect = 2.7
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 229 SATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPP 276
S +A V P P E+ P P E PP
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL,
peptidoglycan, hydrolase; 1.00A {Mycobacterium
tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Length = 214
Score = 32.3 bits (73), Expect = 0.24
Identities = 17/99 (17%), Positives = 21/99 (21%), Gaps = 7/99 (7%)
Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
G P P+ P G P A + + G E
Sbjct: 1 GAMGWDGLWDPTLPMIPSANIP---GDPIAVVNQVLGISATSAQVTANMGRKFLEQL--- 54
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
G P G A P G A+E
Sbjct: 55 -GILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRG 92
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 33.2 bits (76), Expect = 0.24
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 407 AEGPPPAEGAPPA-------EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
+ G P P P + +E + R+ A
Sbjct: 11 SSGLVPRGSHMARLYRLSWPTVQLPTSAQPPSCVLLGTSEVSADIQVYPDLRSLTAALDA 70
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADA 484
GA P AP PP G A +
Sbjct: 71 GAEPPGVVIAPTPPGGGRTADVRET 95
Score = 30.1 bits (68), Expect = 2.2
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 413 AEGAPPAEAPPPA------EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
+ G P + A P+ +E + + P A
Sbjct: 11 SSGLVPRGSHMARLYRLSWPTVQLPTSAQPPS-CVLLGTSEVSADIQVYPDLRSLTAALD 69
Query: 467 EGAPAPPAEGAPAPPADAPPAE 488
GA P AP PP A+
Sbjct: 70 AGAEPPGVVIAPTPPGGGRTAD 91
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 32.9 bits (76), Expect = 0.24
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 1 MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRM-EEASGARRKKGFMTP- 58
M T +A + + + + KL EL ++R E + E+A KG +T
Sbjct: 1 MTSVTDRSAHSAERSTEHTIDIHTTAGKLAELHKRREESLHPVGEDAVEKVHAKGKLTAR 60
Query: 59 ERKKKLRLLL 68
ER + LL
Sbjct: 61 ER---IYALL 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.25
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 23 EAKRLKLE-ELERK-RAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQ 80
+A RL E E RK R E R+R++E A + E+ KK ++ +E++++ +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 81 ERRALERKRVIDER 94
+ K +
Sbjct: 136 INNRIADKAFYQQP 149
Score = 30.9 bits (69), Expect = 0.69
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 13 AEAAAASAEDEAKR-------LKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLR 65
A+A + E E+ R +L+EL+ + + E + ++ + +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 66 LLLRKKAAEELKREQERRAL 85
+ + A + ++ + +
Sbjct: 135 KINNRIADKAFYQQPDADII 154
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 33.1 bits (74), Expect = 0.28
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A PA G P+ P + P P PP P
Sbjct: 1 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIP 48
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
APA G P+ R P + P P P + P PP P
Sbjct: 2 APAYGQPSAAMGQNMR----PMNQLYPIDLLTELPPPITDLTLPP----PPLVIPPERML 53
Query: 496 PPAESAPA 503
P+E + A
Sbjct: 54 VPSELSNA 61
Score = 28.0 bits (61), Expect = 8.4
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
AP + + A P E PP PP P P+
Sbjct: 2 APAYGQPSAAMGQNMRP----MNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSE 57
Query: 481 PADAPP 486
++A P
Sbjct: 58 LSNASP 63
Score = 28.0 bits (61), Expect = 8.8
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 404 APPAEG-PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
A PA G P A G E P + PP P P+E +
Sbjct: 1 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 60
Query: 463 APP 465
A P
Sbjct: 61 ASP 63
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.9 bits (75), Expect = 0.29
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
A A + G+ A G P A PAD+ +
Sbjct: 938 LEASHAFEVSDSNGSLIASGKVYQWESPDPKLFDTRAAVDPADSTAEFRLSQGDV 992
Score = 28.7 bits (64), Expect = 5.8
Identities = 7/65 (10%), Positives = 13/65 (20%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P G + + ++ + A G P +PA
Sbjct: 926 PKTGTVSLEVRLLEASHAFEVSDSNGSLIASGKVYQWESPDPKLFDTRAAVDPADSTAEF 985
Query: 497 PAESA 501
Sbjct: 986 RLSQG 990
Score = 28.3 bits (63), Expect = 7.6
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
P G E ++ + A G P A PA+S
Sbjct: 926 PKTGTVSLEVRLLEASHAFEVSDSNGSLIASGKVYQWESPDPKLFDTRAAVDPADSTAE 984
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 32.6 bits (72), Expect = 0.31
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 201 KEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKET-PLPPEGEQPPVEEVPPP 259
P + + K+ I A + V K T P+ P P E P
Sbjct: 411 VSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKP 470
Query: 260 PEPEPEPPVEEIPPTPPSPVTPNP 283
+P P P E PTPP+ + +
Sbjct: 471 LKPAPVAPNYEKEPTPPTRLEHHH 494
Score = 29.9 bits (65), Expect = 2.1
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 1/101 (0%)
Query: 184 SQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETP 243
+ + + + + + +
Sbjct: 386 AGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK 445
Query: 244 LPPEGEQPPVEEVPP-PPEPEPEPPVEEIPPTPPSPVTPNP 283
+ E PPV+ P P E E P++ P P P P
Sbjct: 446 VTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
Score = 29.1 bits (63), Expect = 3.9
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 223 PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
P + + + K + VP + +P PPV+ PT P+ T
Sbjct: 410 PVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEK 469
Query: 283 PEE 285
P +
Sbjct: 470 PLK 472
Score = 29.1 bits (63), Expect = 4.0
Identities = 14/69 (20%), Positives = 22/69 (31%)
Query: 218 IPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS 277
+P + + +GK + P P +P E P P+
Sbjct: 415 PVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPA 474
Query: 278 PVTPNPEEL 286
PV PN E+
Sbjct: 475 PVAPNYEKE 483
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 30.8 bits (69), Expect = 0.49
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
A PP PP+ PP PPP+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPS 136
Score = 30.4 bits (68), Expect = 0.62
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
A A + P+ + PP PP P+
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 30.4 bits (68), Expect = 0.67
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A A + PP+ +PP+ PP PP +P+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPP--PSPS 138
Score = 29.6 bits (66), Expect = 1.1
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
A PPP+ P + PPP P+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
Score = 28.8 bits (64), Expect = 1.9
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
A P P + P + PP PP+ S
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 28.8 bits (64), Expect = 2.3
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
PP+ +PP + P P+P+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 28.1 bits (62), Expect = 4.3
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A A + P+ + PP P P+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 27.7 bits (61), Expect = 5.0
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
PP +P PP P P
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
Score = 27.3 bits (60), Expect = 7.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
A A + PP+ PP + PP PP
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 31.9 bits (71), Expect = 0.52
Identities = 25/151 (16%), Positives = 30/151 (19%), Gaps = 16/151 (10%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
GE P + P +PP A P A P G P P
Sbjct: 56 GERTPRKKEPPRASPPGGLAEPPGSAGPQAGPT----------------VVPGSATPMET 99
Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
G P E E +E AE + PP
Sbjct: 100 GIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAP 159
Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
P A + P
Sbjct: 160 PEEENESEPEEPSGVEGAAFQSRLPHDRMTS 190
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 31.5 bits (72), Expect = 0.65
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 253 VEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSA 312
VE V E E P E PP + + + S PV IDDL+ +
Sbjct: 298 VEAVASILERPIELPGREPEHAPPEGEPDTGDRTRIL--ALLGPS-PVGIDDLIRLSGIS 354
Query: 313 VSATPQPLL 321
+ LL
Sbjct: 355 PAVVRTILL 363
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 31.3 bits (71), Expect = 0.68
Identities = 20/171 (11%), Positives = 25/171 (14%), Gaps = 16/171 (9%)
Query: 349 APADGAPPAE--GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
AP + A G A P G E +
Sbjct: 36 APPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRDTEAGRQLWEQTASNV 95
Query: 407 AEGPPPAEGAPPAEA-----------PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
A+ A G P A
Sbjct: 96 AQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTAGPFSDR 155
Query: 456 PPAEGAPAPPAEGAPAPPAEGA---PAPPADAPPAEPAPPAEAPPAESAPA 503
P G P P PP+ P +
Sbjct: 156 AHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNGSG 206
Score = 30.1 bits (68), Expect = 1.5
Identities = 17/98 (17%), Positives = 22/98 (22%), Gaps = 1/98 (1%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
A P P ++ A P P P
Sbjct: 124 ALIGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELIL-DPC 182
Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
PP+ A A P + P + PA A A
Sbjct: 183 PPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSARR 220
Score = 28.2 bits (63), Expect = 6.6
Identities = 22/166 (13%), Positives = 28/166 (16%), Gaps = 12/166 (7%)
Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
P G E + P A
Sbjct: 56 GNDRTGDTGGTTQLRFPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRP 115
Query: 403 PAPPAE-----GPPPAE--GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
+ G P + A P G
Sbjct: 116 SVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGL-PT 174
Query: 456 PPAEGAPAPPAEGAPA----PPAEGAPAPPADAPPAEPAPPAEAPP 497
P P PP+ A P + P + A PA A A
Sbjct: 175 PELILDPCPPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSARR 220
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer
bacterial MEM protein membrane transport, beta barrel
biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Length = 316
Score = 31.3 bits (70), Expect = 0.68
Identities = 18/58 (31%), Positives = 21/58 (36%)
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
E A+ P + AP+ E APP PAP P E P A EP
Sbjct: 3 ETRATTAKQLVQAPEQPAPQPEVAPPTTEQPAPAPAPGTTPGTENFNTPNATPETTEP 60
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 31.1 bits (69), Expect = 0.73
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 400 EGAPAPPAEG-PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
E A A + G P A PP P + P ++ R
Sbjct: 1 EQAKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53
Score = 30.3 bits (67), Expect = 1.5
Identities = 7/42 (16%), Positives = 9/42 (21%)
Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P A PP + PP P +
Sbjct: 8 SNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQ 49
Score = 29.2 bits (64), Expect = 3.6
Identities = 7/43 (16%), Positives = 8/43 (18%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
A + G P PPP P
Sbjct: 4 KAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQ 46
Score = 28.4 bits (62), Expect = 5.9
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
E A A + G P + + P P + P
Sbjct: 1 EQAKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQP 44
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 30.9 bits (69), Expect = 0.76
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 42 RMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCG 96
++ ++KK + T ++ K + K A + + + ++ +CG
Sbjct: 67 KLLGGKKKKKKKSYTTKKKTKHRHVH-TKLGALAFYKLENNGKVSLQQKGCPKCG 120
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 30.5 bits (69), Expect = 0.88
Identities = 18/130 (13%), Positives = 23/130 (17%), Gaps = 13/130 (10%)
Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G+ E E P P P E P
Sbjct: 72 GSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRL 131
Query: 443 APPAEGAPRAEGAPPAEGAP-------------APPAEGAPAPPAEGAPAPPADAPPAEP 489
+P A ++G E P P A P P
Sbjct: 132 SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKITESRPTPAPTATPTAP 191
Query: 490 APPAEAPPAE 499
+P
Sbjct: 192 SPLQATSGPS 201
Score = 29.4 bits (66), Expect = 2.6
Identities = 7/46 (15%), Positives = 8/46 (17%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
E P P P P P P +
Sbjct: 79 VEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIP 124
Score = 28.6 bits (64), Expect = 4.2
Identities = 9/52 (17%), Positives = 11/52 (21%)
Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P G P P+ P P P P + P
Sbjct: 80 EEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRL 131
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 30.5 bits (69), Expect = 0.88
Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 16/104 (15%)
Query: 190 KKREFSMEDAE---KEKKP-------------EWVKEPESKKKRIPIPEPEPEPESATDA 233
K ++F +++A K+++ ++ E P + E ++
Sbjct: 107 KTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYESEILPSTPNPQPPSCQGEAAGSSLI 166
Query: 234 SDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS 277
++ P P P T S
Sbjct: 167 GHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATATS 210
Score = 29.0 bits (65), Expect = 3.2
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
P P+P A G L P+ + P P P + SPV
Sbjct: 149 PNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCT--FPASVLAPVPTHSTVSELSRSPVA 206
Query: 281 PNP 283
Sbjct: 207 TAT 209
Score = 29.0 bits (65), Expect = 3.2
Identities = 10/62 (16%), Positives = 15/62 (24%)
Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
P P+ E A + +P P + AP P P
Sbjct: 149 PNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 497 PA 498
+
Sbjct: 209 TS 210
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA
cleavage, proofreading, BACKTRACKING, gene expression,
multiprotein complex; 3.80A {Saccharomyces cerevisiae}
SCOP: i.8.1.1 PDB: 1eo0_A
Length = 309
Score = 30.5 bits (67), Expect = 1.1
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 9/139 (6%)
Query: 104 MAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITE-------LGKQVNDLRGKFV 156
M E+ + + N A+ L + K+F TE +G +VN +
Sbjct: 1 MDSKEVLVHVKNLEKNKSNDAAVLEILHV--LDKEFVPTEKLLRETKVGVEVNKFKKSTN 58
Query: 157 RPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKK 216
I K V K + + K Q + + + V++P S +
Sbjct: 59 VEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQS 118
Query: 217 RIPIPEPEPEPESATDASD 235
+ + +D
Sbjct: 119 DAMKQDKYVSTKPRNSKND 137
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 30.8 bits (69), Expect = 1.1
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 2/82 (2%)
Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
P + + P + P + + E P P+ A
Sbjct: 11 PPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIE--PEQGTELPSRRAEVP 68
Query: 432 EGAPAPAEGAPAPPAEGAPRAE 453
P P P R +
Sbjct: 69 TKPPLPPARTQGTPVHLNYRQK 90
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 30.9 bits (70), Expect = 1.2
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP-AEPAPPAEAPPAESA 501
E P +P + + A P + AP PP A+P P ++
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTR 61
Score = 28.2 bits (63), Expect = 7.1
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 461 APAPPAEGAPAPPAEGAPAPPADA--PPAEPAPPAEAPPAESAPA 503
+P + + A P + AP + P AEP PP P A +
Sbjct: 12 HQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLK 56
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/71 (14%), Positives = 20/71 (28%)
Query: 199 AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP 258
+ +S K E+ S+ + + P+ + ++P
Sbjct: 9 SSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPA 68
Query: 259 PPEPEPEPPVE 269
PP P V
Sbjct: 69 PPAPFDHRIVT 79
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 30.5 bits (68), Expect = 1.2
Identities = 25/136 (18%), Positives = 32/136 (23%)
Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
P PA+ PP PP E E P P E P A
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
P P + + P + A A + P +
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVAS 141
Query: 480 PPADAPPAEPAPPAEA 495
P +P PA A
Sbjct: 142 GPRALSRNQPQYPARA 157
Score = 29.7 bits (66), Expect = 1.9
Identities = 21/143 (14%), Positives = 29/143 (20%)
Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
E PA+ P P A P P P P
Sbjct: 16 RGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 75
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
+ P + P + A P E + A A P
Sbjct: 76 PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135
Query: 479 APPADAPPAEPAPPAEAPPAESA 501
+ P + PA +
Sbjct: 136 VTSVASGPRALSRNQPQYPARAQ 158
Score = 29.3 bits (65), Expect = 2.7
Identities = 21/125 (16%), Positives = 28/125 (22%)
Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
PA P + + PP P P PP + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
P E PA P E + A A + P
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146
Query: 498 AESAP 502
+ + P
Sbjct: 147 SRNQP 151
Score = 29.3 bits (65), Expect = 2.7
Identities = 19/131 (14%), Positives = 29/131 (22%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
PA P + P + P P + AP + P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
+ P + + + A + A A P P
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146
Query: 474 AEGAPAPPADA 484
+ P PA A
Sbjct: 147 SRNQPQYPARA 157
Score = 28.9 bits (64), Expect = 3.3
Identities = 21/119 (17%), Positives = 27/119 (22%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
A P PP PP E E P P E + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P + + P +P APA + A A
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 28.1 bits (62), Expect = 5.3
Identities = 19/135 (14%), Positives = 24/135 (17%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
P PA+ PP PP E E P P A
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
P P P + + + A
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVAS 141
Query: 474 AEGAPAPPADAPPAE 488
A + PA
Sbjct: 142 GPRALSRNQPQYPAR 156
Score = 27.8 bits (61), Expect = 8.0
Identities = 15/126 (11%), Positives = 24/126 (19%)
Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
+P A P P P + P +
Sbjct: 31 PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 90
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P + P + P P A + A + + +
Sbjct: 91 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150
Query: 462 PAPPAE 467
P PA
Sbjct: 151 PQYPAR 156
Score = 27.4 bits (60), Expect = 9.3
Identities = 21/117 (17%), Positives = 29/117 (24%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
G+ + APA P P E P P P
Sbjct: 15 PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74
Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ P + P P + P + P A P E PA + + A
Sbjct: 75 APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 30.7 bits (68), Expect = 1.3
Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 14/162 (8%)
Query: 196 MEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESAT--------------DASDVEDGKE 241
M + +++ E + P AT + + D ++
Sbjct: 297 MRALIHLAGVSLGQRRATRRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKED 356
Query: 242 TPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVS 301
+ + V EV PE +++ + + V ++
Sbjct: 357 KENAMKRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDDE 416
Query: 302 IDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEP 343
D M + Q K KD + + E
Sbjct: 417 EADDDVSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRT 458
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 355 PPAEGAPPAEGA-PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
++G P A PP + P P G+ + A +E P P
Sbjct: 29 SASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPY 88
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAE 439
+P + + +
Sbjct: 89 TSSPESIMGYSYMDSYQTSSPASIPH 114
Score = 30.3 bits (68), Expect = 1.6
Identities = 18/104 (17%), Positives = 30/104 (28%)
Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
+ P +A +D + P PP + P P
Sbjct: 29 SASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPY 88
Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLK 322
+ + D+ S+P SI L+ +L+ PQ K
Sbjct: 89 TSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAK 132
Score = 29.2 bits (65), Expect = 3.2
Identities = 21/137 (15%), Positives = 33/137 (24%), Gaps = 14/137 (10%)
Query: 376 EGAPPAEGAPPAEGAPPAEG---APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
E A P++ + A++G P A PP P P + P
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP------ 486
P + P +P + + + PA P
Sbjct: 65 SLQGYQTYGHFPS----RAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 487 -AEPAPPAEAPPAESAP 502
EP P +
Sbjct: 121 KCEPDEPQVQAKIMAYL 137
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 28.3 bits (64), Expect = 1.5
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 79 EQERRALERKRVIDERCG-EPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLK 137
EQ+ + L + +++ G D+ E+E+ +L ++ ++ + + R
Sbjct: 29 EQQNKILLAE--LEQLKGQGKSRLGDLYEEEMRELRRQ-------VDQLTNDKAR----V 75
Query: 138 DFEITELGKQVNDLRGKF 155
+ E L + + LR K
Sbjct: 76 EVERDNLAEDIMRLREKL 93
>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A
2cwl_A
Length = 302
Score = 30.1 bits (67), Expect = 1.6
Identities = 11/51 (21%), Positives = 14/51 (27%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
P +G P +G P G P + AE AP
Sbjct: 238 PEDYRDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGHDAAEFAPEFHPG 288
Score = 27.8 bits (61), Expect = 8.4
Identities = 14/92 (15%), Positives = 20/92 (21%), Gaps = 1/92 (1%)
Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
+A T K D + E + + G +GA
Sbjct: 193 GKALESLTGVEMTKMLPIPKIDNSKIPEAKKYMDLGFHRNLYRFSPEDYRDLG-LIWKGA 251
Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
P +G P A AP
Sbjct: 252 SPEDGTEVVVVDGPPTGGPVFDAGHDAAEFAP 283
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 30.2 bits (68), Expect = 1.7
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 161 KKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEK-----EKKPE------WVK 209
+ + L + F R + K F++ +E K+ W +
Sbjct: 238 TMSNYTLLPPSLLDHRRGAF-LRKGVCGDWKNHFTVAQSEAFDRAYRKQMRGMPTFPWDE 296
Query: 210 EPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEP 264
+PE P P PEPEP+ + + + + P P P + P P P
Sbjct: 297 DPEEDGSPDPEPSPEPEPKPSLEPN--TSLEREPRPNSSPSPSPGQASETPHPRP 349
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 30.1 bits (67), Expect = 1.8
Identities = 20/94 (21%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
+ P E + + A AA A A P P P P E A
Sbjct: 6 HMSVTTPRRETSLLSRALRAT--AAAATAVVATVALAAPAQAANPYERGPNPTESMLEAR 63
Query: 433 GAPAP--AEGAPAPPAEGAPRAEGAPPAEGAPAP 464
P E A A+G P E
Sbjct: 64 SGPFSVSEERASRFGADGFGGGTIYYPRENNTYG 97
Score = 29.3 bits (65), Expect = 3.3
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
+ + + A A A PA+A P E P + A P
Sbjct: 8 SVTTPRRETSLLSRALRATAAAATAVVATVALAAPAQAANPYERGPNPTESMLEARSGPF 67
Query: 444 PPAEGAPRAEGAPPAEGAP-APPAEGAPAP 472
+E GA G P E
Sbjct: 68 SVSEERASRFGADGFGGGTIYYPRENNTYG 97
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 29.9 bits (67), Expect = 1.8
Identities = 16/112 (14%), Positives = 26/112 (23%)
Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
A APP+ A + + P + + +
Sbjct: 2 ATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQK 61
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
+ + A A AE A E + G P+ P P
Sbjct: 62 QSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLK 113
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 29.1 bits (65), Expect = 1.8
Identities = 11/46 (23%), Positives = 13/46 (28%)
Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G P P E E APA+ GA G+
Sbjct: 2 SDNNGTPEPQVETTSVFRADLLKEMESSTGTAPASTGAENLPAGSA 47
Score = 27.5 bits (61), Expect = 6.4
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 467 EGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
G P P E AD + AP + A
Sbjct: 5 NGTPEPQVETTSVFRADLLKEMESSTGTAPASTGAEN 41
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 30.2 bits (67), Expect = 1.9
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 237 EDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEI-PPTPPSPVTPNPEELWLYLKDTV- 294
+ K E P + V P E + P E++ PPTP + + L
Sbjct: 8 RNAKVKGKFRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCT 67
Query: 295 SASNPVSI 302
NP+++
Sbjct: 68 DPRNPITV 75
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.2 bits (67), Expect = 2.0
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 3/137 (2%)
Query: 7 AAAETPAEAAAASAEDEAKRLKLE---ELERKRAEVRRRMEEASGARRKKGFMTPERKKK 63
A E + A+A+ EA+RL+ E LER++ + E+A + M+ +
Sbjct: 660 LAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVEST 719
Query: 64 LRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNL 123
++ E R + ++ + ++ + + + ++ ++ Y + L
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779
Query: 124 EAIKYELDREIMLKDFE 140
E K + + K F+
Sbjct: 780 EVSKAQQLANVEAKKFK 796
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 29.7 bits (67), Expect = 2.0
Identities = 17/94 (18%), Positives = 22/94 (23%), Gaps = 4/94 (4%)
Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
P A G PAE + PA+ P A A +
Sbjct: 197 VNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDR---DIPFQISAVAARSVQGDGGI-RS 252
Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
+ + A A P APR
Sbjct: 253 ASTLLNLMQQATAVADRTEVLGPIDEAPVSAAPR 286
Score = 29.7 bits (67), Expect = 2.2
Identities = 17/89 (19%), Positives = 21/89 (23%)
Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
P G AE A PA P A A + +
Sbjct: 197 VNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTL 256
Query: 474 AEGAPAPPADAPPAEPAPPAEAPPAESAP 502
A A E P + P +AP
Sbjct: 257 LNLMQQATAVADRTEVLGPIDEAPVSAAP 285
Score = 29.7 bits (67), Expect = 2.3
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
P A PAE A + PA+ P + + A + +G +
Sbjct: 197 VNRWPLPEAGVRSGLAPAERDTAGQ-PIEPADIDRDIPFQISAVAARSVQGDGGIRSAST 255
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
A A + P A P
Sbjct: 256 LLNLMQQATAVADRTEVLGPIDEAPVSAAP 285
Score = 28.2 bits (63), Expect = 6.8
Identities = 15/89 (16%), Positives = 21/89 (23%)
Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA 441
P A G AE A P + P + A + +G A
Sbjct: 197 VNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTL 256
Query: 442 PAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
+ A+ P AP
Sbjct: 257 LNLMQQATAVADRTEVLGPIDEAPVSAAP 285
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A
3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 29.8 bits (68), Expect = 2.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
KL +L R+ E A + KG +T ER + LLL
Sbjct: 17 KLADLRRRIEEATHAGSARAVEKQHAKGKLTARER---IDLLL 56
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 29.8 bits (68), Expect = 2.2
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
+EEL + + + + +E + KG +T ER L LL
Sbjct: 11 LIEELRQLKEKAYKGGGDERIQFQHSKGKLTARER---LALLF 50
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 29.7 bits (66), Expect = 2.2
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 15/109 (13%)
Query: 147 QVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPE 206
+ +R + K+V + A+L K +++ K F +++ K
Sbjct: 160 HIRAIRKVISEILTKEVQG--STLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRK--- 214
Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEE 255
K + P + + S E GK+ G + V E
Sbjct: 215 ------VKLLKQPKFDVGALMALHGEGSGEEKGKK----VTGFKDEVLE 253
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.9 bits (66), Expect = 2.2
Identities = 8/63 (12%), Positives = 16/63 (25%)
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
+ P + R+ PP +P + + P P + + S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 501 APA 503
Sbjct: 61 FAV 63
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 29.7 bits (67), Expect = 2.6
Identities = 18/112 (16%), Positives = 22/112 (19%), Gaps = 3/112 (2%)
Query: 384 APPAEGAPPAEGAPAAEGAPAPPAE---GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
+ PA P + +P A P APA G
Sbjct: 119 SWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAE 178
Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
A R G P E AP P +
Sbjct: 179 AEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGD 230
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 29.6 bits (66), Expect = 2.9
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 255 EVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDD 304
+ P P P +P TP+P+++ + L D V
Sbjct: 2 DNSSSSSTSGSPGSPGNPGNPGTPGTPDPQDVVVRLPDVAVPGEAVQASA 51
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 29.4 bits (65), Expect = 3.1
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
P + I + A ++ + + + PPP P P P
Sbjct: 2 PGYQDPNSQIIPSMSVSIYPSSAEVLKACRNLGKNGLSNSSILLDKCPPPRP-PSSPYPP 60
Query: 271 I------PPTPPSPVTPNPEELWLYLKDTV-SASNPVSI 302
+ PPTP + + + L + +NPV++
Sbjct: 61 LPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTV 99
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 29.5 bits (67), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
K+EEL++ E+ + E + + G +T ER L LLL
Sbjct: 18 KIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 57
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.4 bits (65), Expect = 3.2
Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 22/183 (12%)
Query: 23 EAKRLKLEELER-KRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQE 81
E +R LEE+E + A R + A ++ + ++
Sbjct: 18 ETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKK 77
Query: 82 RRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI---KYELDREIMLKD 138
+ ++ ++ + EI ++Y ++ I + + + L +
Sbjct: 78 VKRKRKQIIL-------------QQHEINIFLRDYQEKQQTFNKINRPEETQEDDKDLPN 124
Query: 139 F--EITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKK--REF 194
F ++ +L K++ + F + F+ + N S F
Sbjct: 125 FERKLQQLEKELKNEDENFELD-INSKKDKYALFSSSSDPSRRTNILSDRARDLDLNEIF 183
Query: 195 SME 197
+ +
Sbjct: 184 TRD 186
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 28.9 bits (64), Expect = 3.3
Identities = 9/71 (12%), Positives = 14/71 (19%)
Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
+ + + + PP + A P P
Sbjct: 151 FLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAG 210
Query: 414 EGAPPAEAPPP 424
G PP P
Sbjct: 211 PGGPPPPFPAG 221
Score = 28.1 bits (62), Expect = 6.0
Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 4/80 (5%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
+ + + EG PP + A P P +
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPG----AVPGGDR 204
Query: 477 APAPPADAPPAEPAPPAEAP 496
P P P P P +
Sbjct: 205 FPGPAGPGGPPPPFPAGQTH 224
Score = 28.1 bits (62), Expect = 6.2
Identities = 15/80 (18%), Positives = 18/80 (22%), Gaps = 1/80 (1%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA-PPAEG 460
P + G A + A G R GA P +
Sbjct: 145 TPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 204
Query: 461 APAPPAEGAPAPPAEGAPAP 480
P P G P PP
Sbjct: 205 FPGPAGPGGPPPPFPAGQTH 224
Score = 27.8 bits (61), Expect = 7.6
Identities = 10/80 (12%), Positives = 14/80 (17%), Gaps = 3/80 (3%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
+ G + + P + A P G
Sbjct: 145 TPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 204
Query: 479 APPADAPPAEPAPPAEAPPA 498
P P PP P
Sbjct: 205 FPG---PAGPGGPPPPFPAG 221
Score = 27.4 bits (60), Expect = 9.7
Identities = 11/73 (15%), Positives = 15/73 (20%)
Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
+ + P G+ A P G GA + P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208
Query: 445 PAEGAPRAEGAPP 457
G P
Sbjct: 209 AGPGGPPPPFPAG 221
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 29.5 bits (65), Expect = 3.5
Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 36/166 (21%)
Query: 29 LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERK 88
+ L + E+ + A+ A+ +G E L+ LL +E+K+E R LE
Sbjct: 526 IVLLCKPEPELNAAIPSANPAKTMQG---SEVVNVLKSLLSNL--DEVKKE--REGLE-- 576
Query: 89 RVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQV 148
D + D D I + +TEL +
Sbjct: 577 ----------NDLKSVNFDMTSKFLTA------------LAQDGVINEEALSVTELDRVY 614
Query: 149 NDLRGKFVRPILKKVSKYENKFAKLQKKAAEF-NFRSQLKAVKKRE 193
L K + + + K E +Q EF + RE
Sbjct: 615 GGLTTK----VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLRE 656
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 29.1 bits (65), Expect = 3.5
Identities = 30/162 (18%), Positives = 38/162 (23%), Gaps = 17/162 (10%)
Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA---- 396
G E P +G P A P P +G G A G
Sbjct: 60 GAGLSEAFTP-NGIPADVTADPVMERPGDRSFLNDDGLITGSEPGTEGGTTAAPGINGSR 118
Query: 397 ---PAAEGAPAPPAEGPPPAEGAPPAE---------APPPAEGAPAAEGAPAPAEGAPAP 444
P P G A PA + AP A +
Sbjct: 119 ARLPYNLDPARTPVLGSWRAGVQVPAMLRSGWYRLPTNEQRDRAPLLVVTAAGRFDSREV 178
Query: 445 PAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
+ A + A G A+ AP AP + P
Sbjct: 179 RLQWATDEQAAAGHHGGSMEFADVGAAPAWRNLRAPLSAIPS 220
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 28.6 bits (64), Expect = 3.7
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 69 RKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQR----IYNLE 124
+ + E L A+E ++ +PKD DD E E+ + C ++ IY E
Sbjct: 106 KGQLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ-E 164
Query: 125 AIKYELDREIMLKDF----EITELGKQVNDLRGKF 155
E D EI++K F +E K + L G++
Sbjct: 165 KQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 28.8 bits (64), Expect = 3.8
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 8/76 (10%)
Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
+ + + G PA+ + A GA + + P
Sbjct: 250 FSSNSTEASAITRELLGGGVPAQYKD--ESWVRKFASGAQARHDGVSTLQMPSDTPQ--- 304
Query: 477 APAPPADAPPAEPAPP 492
PA+ P P
Sbjct: 305 ---HPAETPEHSNTQP 317
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 28.6 bits (63), Expect = 3.8
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Query: 20 AEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKRE 79
+ ++ K+++L E ++E + +T + L +++ E
Sbjct: 148 WQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL--YHQVSKIEWE 205
Query: 80 QERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRI 120
E K + D + + W +
Sbjct: 206 YECEPGMVKGIHHGPSVAQPIHLDSTQLSRKFISDYLWSLV 246
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 28.6 bits (63), Expect = 3.9
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 30 EELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELK--REQERRALER 87
E +++K R E+ A+ ++ + + K+ + KA + E++ ++
Sbjct: 7 ENVQKKL----ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDE 62
Query: 88 KRV 90
KR
Sbjct: 63 KRK 65
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 28.7 bits (64), Expect = 4.0
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
P ++ P + PP + E A P+ P P A PP A
Sbjct: 290 PLSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVT--LPGPATSVARIPPHKA 343
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 29.0 bits (65), Expect = 4.0
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQP--PVEEVP 257
+ + E P + + E P + +E G +P P E P
Sbjct: 277 DGPRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRERP 336
Query: 258 PPPEPEPEPPVEEIPPTP 275
P P P + P
Sbjct: 337 TSPAPHRPPKRVKAKAVP 354
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 29.2 bits (66), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 20 AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK 53
AE + LK +LE+ E+ M+ S ARR K
Sbjct: 198 AEAIQELLKELDLEKLERELLEEMKHPSRARRAK 231
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 27.5 bits (60), Expect = 4.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 432 EGAPAPAEGAPAPPAEGAPRAEGA----PPAEGAPAPPAEGAPAPPAEGAPAPPA 482
+ + +P PAPP P A G P G+P PPA+G P G+P PP+
Sbjct: 52 DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase;
HET: MCA; 1.90A {Propionibacterium freudenreichii}
SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 29.1 bits (66), Expect = 4.5
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
++E+L +R + E + +G T ER L LL
Sbjct: 15 RVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER---LNNLL 54
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization,
active site conformation, hydrolysis/apoptosis complex;
2.50A {Drosophila melanogaster}
Length = 316
Score = 28.6 bits (63), Expect = 4.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEEL 286
P PE P V ++ P +TP +
Sbjct: 3 PSPEASEGPCVSKLRNEPLGALTPYVGVV 31
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 29.0 bits (63), Expect = 4.7
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 13/162 (8%)
Query: 91 IDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150
++ R D E EI + + + + L + I E K
Sbjct: 303 VNSRLKHFDQPFDRKEFEILERTYRKFAELSVSDEEWQNLKNLEQPLNGRIVECAKNQET 362
Query: 151 LRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKE 210
+ +R K N + S +V + E+ + K W
Sbjct: 363 GAWEMLRFRDDK--LNGNHT-----SVVQKVLESINDSVSLEDL--EEIVGDIKRCW--- 410
Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPP 252
+ ++ + P P + +A+ PP ++ P
Sbjct: 411 -DERRANMAGGSGRPLPSQSQNATLSTSKPVHSQPPSNDKEP 451
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 28.9 bits (63), Expect = 4.7
Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 17/215 (7%)
Query: 18 ASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELK 77
+ ED+ + ++ +R+ RRR + S + ++ + ++ E +
Sbjct: 391 GNQEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRS----VETQSTEVVT 446
Query: 78 REQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLK 137
+ + ++ P D + + + N E I + L
Sbjct: 447 SSKSTSVDTKPPKKTQKIDAPAPVDLV---NLSEKTSNRSLGATNRELINNRAANRLGLS 503
Query: 138 DFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSME 197
VN L ++ L +N + ++ +
Sbjct: 504 REAAAV--SSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPI 561
Query: 198 DAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATD 232
D + +K++ P E E
Sbjct: 562 DTKVSN--------VGQKRKAPDSTEENENTDTVR 588
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.7 bits (65), Expect = 4.8
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 22 DEA---KRLK-------LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLR---LLL 68
DEA RL+ L+ELE+K EVR+ + A + + F E+ LR L
Sbjct: 379 DEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAV---QSQEF---EKAASLRDTEQRL 432
Query: 69 RKKAAEELKREQERRALERKRVIDE 93
R++ + K +E++ E V +
Sbjct: 433 REQVEDTKKSWKEKQGQENSEVTVD 457
>3nb3_A Outer membrane protein A; virus assembly, cementing protein,
bacteriophage, SF6, shige beta-barrel, icosahedral,
virus; 19.00A {Escherichia coli}
Length = 346
Score = 28.8 bits (64), Expect = 4.9
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 252 PVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMS 311
P P P P V+ T S V L+ + K T+ ++D L +L +
Sbjct: 194 GEAAPVVAPAPAPAPEVQTKHFTLKSDV------LFNFNKATLKPEGQAALDQLYSQLSN 247
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 28.4 bits (64), Expect = 5.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
PAP G P AP PA APPA+ P P
Sbjct: 2 PAPADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVDP 37
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 28.9 bits (64), Expect = 5.0
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
E + A P P APP+ + A AEA A
Sbjct: 371 RTELSAALPLYQTDGEPTREGGAPPSGTSQPDEAGAAEAVTA 412
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 28.7 bits (63), Expect = 5.1
Identities = 8/58 (13%), Positives = 11/58 (18%), Gaps = 3/58 (5%)
Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
A G + G G + P G P G +
Sbjct: 453 AANGGTQSFGFNINYSGVLSKPT--GFTVNGTECT-VKKGELEGKPIPNPLLGLDSTR 507
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 28.3 bits (62), Expect = 5.5
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 20 AEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKRE 79
A + AK E++ KR RR E + +++K + + ++ +A E+ E
Sbjct: 2 ASEAAKVAVPEKVILKR----RREEVWAAEKKQKVAAEKIKAAENTKVIYARA-EQYAGE 56
Query: 80 QERRALERKRVIDER 94
E + E ++ E
Sbjct: 57 YEAQDKELVQLKREA 71
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 28.6 bits (64), Expect = 5.8
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
G P A P AP + GA ++ P PP A A G+PP
Sbjct: 184 DVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPP 239
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton
TR pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB:
1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H*
1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H*
1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Length = 260
Score = 28.3 bits (63), Expect = 6.0
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 426 EGAP--AAEGAPAPAEGAPAPPAEGA-----PRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
EG P +G PA +G P R P + P A +EG P
Sbjct: 38 EGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFP 97
Query: 479 APPADAPPAEPAPPAEAPPAESAP 502
P P + PA P
Sbjct: 98 HAPTGDPMKDGVGPASWVARRDLP 121
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase,
metalloenzyme, preoxidase; HET: MES; 1.33A
{Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A
1jku_A
Length = 266
Score = 28.1 bits (62), Expect = 6.2
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
+G+ EG A +G E P G P + P
Sbjct: 221 DGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDP 259
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 28.6 bits (64), Expect = 6.2
Identities = 7/44 (15%), Positives = 9/44 (20%)
Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
A PA A + A+ A P
Sbjct: 5 APPKDPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVTA 48
>3aja_A Putative uncharacterized protein; alpha-beta hydrolase, serine
esterase, cutinase, lipase, HYD; 2.90A {Mycobacterium
smegmatis}
Length = 302
Score = 28.4 bits (62), Expect = 6.4
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
P A PP+ P PP P P + A P
Sbjct: 2 RRPDTPATPPPSAEPPGGVVVPPGTRKPRPEFQSADCPDVM 42
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.8 bits (62), Expect = 6.7
Identities = 11/59 (18%), Positives = 12/59 (20%)
Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
P A G A A EG + E A A A
Sbjct: 173 PPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 28.4 bits (63), Expect = 7.0
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
A + E A E P + P PP A P G APA G P P
Sbjct: 564 ASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQA---PFGYGYTAPAYGQPQP 618
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.4 bits (62), Expect = 7.2
Identities = 23/139 (16%), Positives = 31/139 (22%), Gaps = 7/139 (5%)
Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP-----PPAEGAPPAEA 421
P PP + + G G A P P P A A
Sbjct: 15 PMLPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGP 74
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
P A+ A AP A AP + P P + A
Sbjct: 75 RVRQPARPLGSAWRDQAQRPAVASRRRPTTAGAAP--LTAVAPAHDTPPVPDVDSRGAIL 132
Query: 482 ADAPPAEPAPPAEAPPAES 500
+P + +
Sbjct: 133 RRQYNLSTSPLTSSVATGT 151
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 28.4 bits (62), Expect = 7.4
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
PA+ A A +G + +GP E E PAE P +
Sbjct: 14 PADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKED- 72
Query: 434 APAPAEGAPAPPAEGAP 450
PA P P P
Sbjct: 73 --KPAAAKPETPKTVTP 87
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 27.7 bits (62), Expect = 7.8
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 5/49 (10%)
Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDL 305
P + E + +T + L+L ASN +
Sbjct: 7 TLPRTLMAPRMISEGDIGGIAQITSS-----LFLGRGSVASNRHLLQAR 50
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 27.7 bits (61), Expect = 8.6
Identities = 13/93 (13%), Positives = 20/93 (21%), Gaps = 1/93 (1%)
Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
P G AP P + P++ A GA + + A
Sbjct: 4 IPTQTFYGRRWRP-APVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA 62
Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
P + P P +
Sbjct: 63 QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRM 95
Score = 27.7 bits (61), Expect = 9.5
Identities = 14/89 (15%), Positives = 19/89 (21%)
Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
PA P G + AA GA A + P +
Sbjct: 10 YGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKT 69
Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
PPP P + +
Sbjct: 70 PPPKPKKTQKPKKPTQKKKSKPGKRMRNC 98
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 28.2 bits (63), Expect = 8.8
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 1/152 (0%)
Query: 195 SMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVE 254
+ + ++E+ V +PI E E DVE L + +
Sbjct: 25 ELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLLQKASSKAGAK 84
Query: 255 EVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVS 314
E + + + + + + P + K+ ++
Sbjct: 85 EKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSE 144
Query: 315 ATPQPLLKSVVKDTLRRQAS-HEETEGGEPKP 345
+ QP K + K S E E PKP
Sbjct: 145 SDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKP 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 9.1
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 23/68 (33%)
Query: 283 PEELWLY---LKDTVSAS------------NPVSIDDLVEKLMSAVSATPQP-------- 319
P + L++ + P + +LV K + VS+ +P
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 320 LLKSVVKD 327
+L + +
Sbjct: 83 VLNLCLTE 90
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 27.7 bits (61), Expect = 9.1
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 236 VEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
+D P P+ P P P+ P P P + N +
Sbjct: 217 NDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNP--NNPDNPDNGDNNNSD 263
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 27.9 bits (62), Expect = 9.1
Identities = 14/105 (13%), Positives = 15/105 (14%), Gaps = 2/105 (1%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
G P A P A P E A
Sbjct: 165 GTPHARLLWGPDI--TTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVV 222
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
PAP A P+ P
Sbjct: 223 VGQWTIDPAPAAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPER 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.9 bits (61), Expect = 9.3
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 30/155 (19%)
Query: 154 KFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPES 213
K +L ++ + + K +K+ + + +K + + + K+ + E
Sbjct: 809 KVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFY 868
Query: 214 KKKRIPIPEPEPEPESATDA-----SDVEDGKETPL----------------PPEGE--- 249
K K P S ++D + P+ P E
Sbjct: 869 KNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVALI 928
Query: 250 ----QPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
Q P P + + V+ P+ P
Sbjct: 929 ETVRQMKDVNAPLPTPFKVDDNVD--FPSALQPSL 961
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 27.5 bits (60), Expect = 9.4
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEP 266
V E+ + + + + ++ ++ P P P P P+
Sbjct: 195 AVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPN-NPDN 253
Query: 267 PVEEIPPTPPS-PVTPNPEE 285
P P + NP+
Sbjct: 254 PNNPDNPDNGDNNNSDNPDA 273
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.9 bits (63), Expect = 9.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 28 KLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLR---LLLRKKAAEELKREQERRA 84
L+ELE+K EVR+ + A ++ E+ LR LR++ + K +E++
Sbjct: 395 NLKELEQKLDEVRKEKDAAVQSQEF------EKAASLRDTEQRLREQVEDTKKSWKEKQG 448
Query: 85 LERKRVIDE 93
E V +
Sbjct: 449 QENSEVTVD 457
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 27.8 bits (62), Expect = 9.7
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 212 ESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
S+ + P+P P P P + P PP +Q P V + + +++
Sbjct: 4 NSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDD 62
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 27.7 bits (62), Expect = 9.7
Identities = 24/165 (14%), Positives = 30/165 (18%), Gaps = 25/165 (15%)
Query: 349 APADGAPPAEGAPPAEGAPPAE-GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
A G P G P +G A +P P
Sbjct: 55 TGEGFAGTLRKL----GFEPVATGMPVFDGFLAALRIRFDTDSPEGLTPEQLSELPQIVF 110
Query: 408 EGPPPAEGAPPAEA-------------PPPAEGAPAAE--GAPAPAEGAPAPPAEGAPRA 452
P + AA G P G + R+
Sbjct: 111 GRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRS 170
Query: 453 EGAPPAE-----GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
G PP PP+ P A P
Sbjct: 171 IEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARP 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.128 0.371
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,259,924
Number of extensions: 578010
Number of successful extensions: 7599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4633
Number of HSP's successfully gapped: 1170
Length of query: 503
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 405
Effective length of database: 3,965,535
Effective search space: 1606041675
Effective search space used: 1606041675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (26.6 bits)