RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9560
(503 letters)
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus
[TaxId: 1280]}
Length = 145
Score = 35.3 bits (81), Expect = 0.005
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 31/125 (24%)
Query: 116 YWQRIYNLEA-IKYELDREIMLKDFEITELGKQVNDLRGKFVRPIL--------KKVSKY 166
R+ +LE+ L +L+ + E K+ D + K + IL +K +Y
Sbjct: 27 LKGRLTSLESQFINALG---ILETYHYGE--KEYKDAKDKLMTRILGEDQYLLERKKVQY 81
Query: 167 ENKFAKLQKKAAEFNFRSQLKAVKKREFSMED---------------AEKEKKPEWVKEP 211
E ++ KL KK E N S++K ++++ED A K+ + + V+
Sbjct: 82 E-EYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKD-VEII 139
Query: 212 ESKKK 216
E++
Sbjct: 140 ENQHH 144
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 258
Score = 32.8 bits (74), Expect = 0.080
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLLRKKAAEEL 76
KL EL ++R E + E+A KG +T ER + LL + + EL
Sbjct: 9 KLAELHKRREESLHPVGEDAVEKVHAKGKLTARER---IYALLDEDSFVEL 56
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 31.6 bits (71), Expect = 0.19
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
K+EEL++ E+ + E + + G +T ER L LLL
Sbjct: 6 KIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 45
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium
freudenreichii [TaxId: 1744]}
Length = 253
Score = 31.0 bits (69), Expect = 0.28
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
++E+L +R + E + +G T ER L LL
Sbjct: 9 RVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER---LNNLL 48
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
thermophilus [TaxId: 274]}
Length = 299
Score = 30.6 bits (69), Expect = 0.36
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA-PPAEGA 449
+G P +G P G P + AE AP P E
Sbjct: 248 WKGASPEDGTEVVVVDGPPTGGPVFDAGHDAAEFAPEFHPGELY 291
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 29.4 bits (66), Expect = 0.47
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
+ A GA AP GA AP AP + P
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51
Score = 28.6 bits (64), Expect = 0.73
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
A A P APA GA A AP P A
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTA 43
Score = 28.2 bits (63), Expect = 1.0
Identities = 6/32 (18%), Positives = 7/32 (21%)
Query: 467 EGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
+ A A P A P P
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 27.4 bits (61), Expect = 1.9
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
A +P APA A A AP A P+
Sbjct: 17 AASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51
Score = 27.4 bits (61), Expect = 2.2
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
A +P APA AP A A P+
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 27.1 bits (60), Expect = 2.6
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
G++ A A+ A A AP AP + AP + A A+G
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPILDKAVKAKGEK 63
Score = 27.1 bits (60), Expect = 2.8
Identities = 5/32 (15%), Positives = 6/32 (18%)
Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
+ A P A P P
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 27.1 bits (60), Expect = 3.1
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
A +P A A AP P
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 26.7 bits (59), Expect = 3.3
Identities = 9/46 (19%), Positives = 12/46 (26%)
Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
+ A A AP A P + AP + A
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPILDKAVKAK 60
Score = 26.7 bits (59), Expect = 3.7
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
+ A P A A A P AP + P + A A+G
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPILDKAVKAKGEK 63
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
G AA A A G P P A
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTA 43
Score = 26.3 bits (58), Expect = 4.9
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
G A A+AP A A AP P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 26.3 bits (58), Expect = 5.7
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
+ A GA AP + A S
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 25.9 bits (57), Expect = 5.9
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
+ A A P PA AP + A
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 25.9 bits (57), Expect = 6.1
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 475 EGAPAPPADAPPAEPAPPAEAPPAESAPA 503
+ A A P A A P P
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPT 42
Score = 25.5 bits (56), Expect = 8.6
Identities = 7/34 (20%), Positives = 8/34 (23%)
Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
G A A AP A P+
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 25.5 bits (56), Expect = 8.8
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
+ A P PA A + AP
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 25.5 bits (56), Expect = 9.7
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
+ A P PA A AP P + AP
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 29.7 bits (65), Expect = 0.61
Identities = 21/171 (12%), Positives = 60/171 (35%), Gaps = 4/171 (2%)
Query: 14 EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
+ + K+ EL+ K+ ++ + A R K + RL +K
Sbjct: 16 KIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEE 75
Query: 74 EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQ---EYWQRIYNLEAIKYEL 130
+ +K+ ++ + V + + +D + + + +Y + + L
Sbjct: 76 DAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTL 135
Query: 131 DREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFN 181
+ + D + ++ + + + + + KY K+QK+ + +
Sbjct: 136 FKYLNQNDATQQGVNEKSKAIEQNYKK-LKEVSDKYTKVLNKVQKEKQDVD 185
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.3 bits (65), Expect = 0.68
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 12/144 (8%)
Query: 14 EAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
+ A A D +LK ++ +R + +A +R++ + + + +
Sbjct: 52 DNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRI-----VDSN 106
Query: 72 AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131
EE K + +R+ + + E E +D + +R A+
Sbjct: 107 YKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQA 166
Query: 132 REIMLKDFEITELGKQVNDLRGKF 155
R E+ +L K + +L F
Sbjct: 167 RHQ-----ELLKLEKSMAELTQLF 185
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 29.7 bits (66), Expect = 0.78
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 28 KLEELERKRAEVRRRM-EEASGARRKKGFMTP-ERKKKLRLLL 68
KL +L R+ E A + KG +T ER + LLL
Sbjct: 8 KLADLRRRIEEATHAGSARAVEKQHAKGKLTARER---IDLLL 47
>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre
(cytochrome subunit) {Rhodopseudomonas viridis [TaxId:
1079]}
Length = 332
Score = 28.8 bits (64), Expect = 1.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
PA PPA A AEG P ++
Sbjct: 25 PATVKAKKERDAQYPPALAAVKAEGPPVSQ 54
Score = 26.5 bits (58), Expect = 9.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEA 421
A A PPA AEG P ++
Sbjct: 30 AKKERDAQYPPALAAVKAEGPPVSQV 55
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 2.9
Identities = 14/140 (10%), Positives = 44/140 (31%), Gaps = 20/140 (14%)
Query: 97 EPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFV 156
E + + +L + Q + ++ ++ + + + K
Sbjct: 195 ELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQN--FPAATDEKDKFVEKMTSFVKDA 252
Query: 157 RPILKKVSKYENKFAKLQKKAAEF------------------NFRSQLKAVKKREFSMED 198
+ K+ + L K+ ++ NFR+ K +
Sbjct: 253 QEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRE 312
Query: 199 AEKEKKPEWVKEPESKKKRI 218
E++ + + + +++K+R+
Sbjct: 313 TEEKMRRAKLAKEKAEKERL 332
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 27.5 bits (60), Expect = 4.1
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
P A A PP D A+ A +
Sbjct: 12 EPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLS 50
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 136
Score = 26.5 bits (58), Expect = 5.2
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 22 DEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRK 70
+ +R L K +R + AS ++ + K+L LL K
Sbjct: 84 EVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGK 132
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
P ++ P + PP + E A P+ P P A PP A
Sbjct: 290 PLSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVT--LPGPATSVARIPPHKA 343
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver
domain {Caulobacter crescentus [TaxId: 155892]}
Length = 153
Score = 26.2 bits (57), Expect = 6.2
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 53 KGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDE 93
+ E +++ +++K + R +LE V D+
Sbjct: 114 RPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLEL-AVTDQ 153
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
{Lactobacillus plantarum [TaxId: 1590]}
Length = 266
Score = 26.8 bits (59), Expect = 6.2
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
+G+ EG A +G E P G P + P
Sbjct: 221 DGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDP 259
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 26.6 bits (58), Expect = 7.3
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 137 KDFEIT--ELGKQVNDLRGKFVRPILKKVSKY---ENKFAKLQKKAAEFNFRSQLKAVKK 191
K T +N L+ K +L+ + Y + F K+ + L +
Sbjct: 167 KKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGT 226
Query: 192 REFSME---DAEKEKKPEWVKEPESKKKRIPIPEPEPEP 227
++ D++ E + +++ E + +P+P+P
Sbjct: 227 SVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTD 265
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 292
Score = 26.7 bits (58), Expect = 7.7
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 234 SDVEDGKETPLPPEGE---QPPVEEVPPPPEPEPEPPVEEIPPT 274
D + P P E E Q E+ E P ++ P
Sbjct: 43 DDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.304 0.128 0.371
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,949,599
Number of extensions: 108213
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 142
Length of query: 503
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,185,626
Effective search space: 490849164
Effective search space used: 490849164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.3 bits)