BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9562
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 136/220 (61%), Gaps = 41/220 (18%)
Query: 38 QASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGP 97
+A+L SG NLR V LPEGED+N+WIAV+ VDFFN+IN++YG
Sbjct: 2 EATLGSG-NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYG------------------ 42
Query: 98 RINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPA 157
T++EFCTE SCP MS GPRYEY WA DG KKP A
Sbjct: 43 -------TITEFCTEASCPVMSAGPRYEYHWA---------------DGTNIKKPIKCSA 80
Query: 158 PQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDRIV 217
P+YI LM W++ Q++DE LFP +PFPK F+++ + IL RLFRV+ H+Y HFD ++
Sbjct: 81 PKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVM 140
Query: 218 SIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQI 257
+ E H+NT +KHF +F++EF+L++ +EL PL+E+ ++
Sbjct: 141 QLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 180
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 135/222 (60%), Gaps = 41/222 (18%)
Query: 36 QAQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSG 95
+ A+L SG NLR V LPEGED+N+WIAV+ VDFFN+IN++YG
Sbjct: 17 RGSATLGSG-NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYG---------------- 59
Query: 96 GPRINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTAL 155
T++EFCTE +C MS GPRYEY WA DG KKP
Sbjct: 60 ---------TITEFCTESTCSVMSAGPRYEYHWA---------------DGTNIKKPIKC 95
Query: 156 PAPQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDR 215
AP+YI LM W++ Q++DE LFP +PFPK F+++ + IL RLFRV+ H+Y HFD
Sbjct: 96 SAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDA 155
Query: 216 IVSIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQI 257
++ + E H+NT +KHF +F++EF+L++ +EL PL+E+ ++
Sbjct: 156 VMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 197
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 43/234 (18%)
Query: 28 TMRYSLHKQAQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTE 87
T + + + +L S L V+LP GED N+W+AVH VDF+N+IN +YG+
Sbjct: 44 TTHQDIKQIVEXTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINXLYGS------- 96
Query: 88 ESCPTMSGGPRINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGA 147
++EFC+ ++CP YEYLWA
Sbjct: 97 ------------------ITEFCSPQTCPRXIATNEYEYLWA----------------FQ 122
Query: 148 KYKKPTALPAPQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVN-LCRKILTRLFRVFV 206
K + P ++ AP+Y+ L W + Q +DE+LFP FP+ F+ + + IL RLFRV+
Sbjct: 123 KGQPPVSVSAPKYVECLXRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYA 182
Query: 207 HVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQICRD 260
H+Y HHF+ I+ + + +NT ++HF F +EF+L+ + PL E+ ++ RD
Sbjct: 183 HIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVXEL-RD 235
>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|B Chain B, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|C Chain C, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|D Chain D, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|E Chain E, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|F Chain F, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|G Chain G, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|H Chain H, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|I Chain I, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A81|A Chain A, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
pdb|2A81|B Chain B, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
pdb|2A81|C Chain C, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
Length = 250
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 37 AQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRI 74
A+ S S+G + V QL ED+ +WI V+D + +
Sbjct: 54 AERSFSAGGDFNEVKQLSRSEDIEEWID-RVIDLYQAV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,721,215
Number of Sequences: 62578
Number of extensions: 372262
Number of successful extensions: 906
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 7
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)