Query psy9562
Match_columns 267
No_of_seqs 122 out of 386
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:48:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 7.2E-74 2.5E-78 516.0 20.1 207 13-260 29-236 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 4E-72 1.4E-76 488.7 17.7 182 37-259 1-182 (185)
3 1pi1_A MOB1A; mitotic EXIT net 99.0 5.3E-12 1.8E-16 110.0 -3.4 146 52-253 4-170 (185)
4 2hjn_A MPS1 binder 1, maintena 99.0 7.1E-12 2.4E-16 113.0 -5.2 154 45-253 47-223 (236)
5 2kwv_A RAD30 homolog B, DNA po 18.4 33 0.0011 23.9 0.6 24 44-67 3-26 (48)
6 1ae9_A Lambda integrase; DNA r 14.4 2.1E+02 0.0072 21.7 4.5 30 171-203 89-118 (179)
7 3etn_A Putative phosphosugar i 12.6 1.4E+02 0.0048 24.8 3.2 47 210-256 6-53 (220)
8 3ee1_A Effector protein VIRA; 11.8 98 0.0034 28.4 2.0 31 153-183 147-177 (400)
9 2i9f_A Nucleocapsid; assembly, 8.6 1.4E+02 0.0049 21.5 1.5 32 23-56 7-38 (69)
10 3nkh_A Integrase; alpha-fold, 7.0 6.1E+02 0.021 20.1 4.9 28 172-199 148-176 (244)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-74 Score=516.00 Aligned_cols=207 Identities=37% Similarity=0.775 Sum_probs=185.3
Q ss_pred cCCCccCcCCCCCCCCcchhhhHHHHhhhccccchhhhccCCCCCCchhHHHhcHHHHHHHHHHHHhhhcccccCCCCCC
Q psy9562 13 QKGKTFRPKKKFNPGTMRYSLHKQAQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPT 92 (267)
Q Consensus 13 ~~~~t~~p~k~~~~~~~~~~l~~~~~a~l~~~~~l~~~V~lP~G~D~neWiA~h~~dffneinll~~~vsefCT~~tCP~ 92 (267)
+.+|++.+.++.++|+++|.|+++++++|++|.|++++|+||+|+|+|||||+|++||||++|++||+++|+||++|||
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP- 107 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCP- 107 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCS-
T ss_pred CCCCCCCCcCCCCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCC-
Confidence 4567775556778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeccccccccCCCCCcccCCcchhhhhhhhhcccccceeeEeccCCCCCCCCCCChHHHHHHHHHHHHhhc
Q psy9562 93 MSGGPRINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQI 172 (267)
Q Consensus 93 m~~~~~~~~~~~~~~e~Ct~~~~p~Msag~~~~~~~~~~~~~~~~~~~ylw~d~~~~k~p~~~~Ap~Yi~~l~~w~~~~l 172 (267)
+|+||++|+ |+|+|+.+ ++|++||||+||+++|+|++++|
T Consensus 108 ------------------------~MsAg~~~~---------------YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l 147 (236)
T 2hjn_A 108 ------------------------RMIATNEYE---------------YLWAFQKG-QPPVSVSAPKYVECLMRWCQDQF 147 (236)
T ss_dssp ------------------------SCBSSTTEE---------------ECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCcCCCCee---------------EEeccCCC-CCCeeeCHHHHHHHHHHHHHHhc
Confidence 999999998 99999976 79999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHhCcchHHHHHHHHHHHHHHhhcCCCCCCccchH
Q psy9562 173 NDENLFPVSTDIPFPKTFV-NLCRKILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLR 251 (267)
Q Consensus 173 ~De~iFPt~~~~~FP~~F~-~~~~~i~rrLfRv~aHiY~hHf~~~~~l~~e~hlNt~fkHF~~F~~eF~Li~~kel~Pl~ 251 (267)
+|+++||++.+++||++|. +.|++|+|||||||||||+|||+.|+++|+|+|||+|||||++|+++|+||++||++||+
T Consensus 148 ~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~ 227 (236)
T 2hjn_A 148 DDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLL 227 (236)
T ss_dssp TCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHHSHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGH
T ss_pred cCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy9562 252 EMTAQICRD 260 (267)
Q Consensus 252 ~l~~~~~~~ 260 (267)
+||+.|+++
T Consensus 228 ~li~~l~~~ 236 (236)
T 2hjn_A 228 ELVMELRDR 236 (236)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHhC
Confidence 999999763
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=4e-72 Score=488.70 Aligned_cols=182 Identities=54% Similarity=1.107 Sum_probs=177.8
Q ss_pred HHhhhccccchhhhccCCCCCCchhHHHhcHHHHHHHHHHHHhhhcccccCCCCCCCCCCCceeeeeccccccccCCCCC
Q psy9562 37 AQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGPRINLIYGTVSEFCTEESCP 116 (267)
Q Consensus 37 ~~a~l~~~~~l~~~V~lP~G~D~neWiA~h~~dffneinll~~~vsefCT~~tCP~m~~~~~~~~~~~~~~e~Ct~~~~p 116 (267)
++++|++| |++++|++|+|+|+|||||+|++||||++|++||+++|+||++|||
T Consensus 1 ~~~~l~~g-~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP------------------------- 54 (185)
T 1pi1_A 1 MEATLGSG-NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCP------------------------- 54 (185)
T ss_dssp CCCCTTCC-CHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCS-------------------------
T ss_pred CccchhcC-cHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCc-------------------------
Confidence 36889999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCcchhhhhhhhhcccccceeeEeccCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcchHHHHHH
Q psy9562 117 TMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRK 196 (267)
Q Consensus 117 ~Msag~~~~~~~~~~~~~~~~~~~ylw~d~~~~k~p~~~~Ap~Yi~~l~~w~~~~l~De~iFPt~~~~~FP~~F~~~~~~ 196 (267)
+|+||++|+ |+|+|+.++++|++||||+||+++|+|++++|+|+++||++.+++||++|.+.|++
T Consensus 55 ~MsAg~~~~---------------Ylw~d~~~~kkp~~~~A~~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~ 119 (185)
T 1pi1_A 55 VMSAGPRYE---------------YHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKT 119 (185)
T ss_dssp SEESSTTCE---------------ECBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHH
T ss_pred cccCCCCeE---------------EEEecCCCCCCCcccCHHHHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHH
Confidence 999999998 99999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhCcchHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHhh
Q psy9562 197 ILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQICR 259 (267)
Q Consensus 197 i~rrLfRv~aHiY~hHf~~~~~l~~e~hlNt~fkHF~~F~~eF~Li~~kel~Pl~~l~~~~~~ 259 (267)
|+|||||||||||+|||+.|.++|+|+|||||||||++|+++|+||++||++||++||+.|++
T Consensus 120 I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~ef~Li~~kel~Pl~~li~~~~~ 182 (185)
T 1pi1_A 120 ILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGS 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCSCGGGGGGGHHHHHHSSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHHHHhCCCCHHHHHhHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 3
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=99.05 E-value=5.3e-12 Score=109.96 Aligned_cols=146 Identities=22% Similarity=0.419 Sum_probs=109.5
Q ss_pred cCCCCCCchhHHHhcHHHHHHHHHHHHhhhcccccCCCCCCCCCCCceeeeeccccccccCCCCCcccCCcchhhhhhhh
Q psy9562 52 QLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGPRINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKY 131 (267)
Q Consensus 52 ~lP~G~D~neWiA~h~~dffneinll~~~vsefCT~~tCP~m~~~~~~~~~~~~~~e~Ct~~~~p~Msag~~~~~~~~~~ 131 (267)
.|..| |+.+-++.+.+...|+| ++.+++ +| .+++|++||+++|+||++
T Consensus 4 ~l~~g-~l~~~v~lP~g~d~~eW-la~~~~-df-----------~~~in~ly~~i~e~Ct~~------------------ 51 (185)
T 1pi1_A 4 TLGSG-NLRQAVMLPEGEDLNEW-IAVNTV-DF-----------FNQINMLYGTITEFCTEA------------------ 51 (185)
T ss_dssp CTTCC-CHHHHTSCCTTCCHHHH-HHHHHH-HH-----------HHHHHHHHHHTGGGSCTT------------------
T ss_pred chhcC-cHHHHhcCcCCCchhhh-HHHHHH-HH-----------HHHHHHHHHHHhcccCcc------------------
Confidence 46788 99999999999999999 889888 88 469999999999999997
Q ss_pred hcccccceeeEeccCCCCCCCCCCChHHHHHHHHHHHHhhc-CCCCCCCC---------------CCCCCCCc----chH
Q psy9562 132 HVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQI-NDENLFPV---------------STDIPFPK----TFV 191 (267)
Q Consensus 132 ~~~~~~~~~ylw~d~~~~k~p~~~~Ap~Yi~~l~~w~~~~l-~De~iFPt---------------~~~~~FP~----~F~ 191 (267)
+||+|.+.++| .+ .|.++.- ..+.--|- +++..||. .|+
T Consensus 52 ------------------tCP~MsAg~~~-~Y--lw~d~~~~kkp~~~~A~~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp 110 (185)
T 1pi1_A 52 ------------------SCPVMSAGPRY-EY--HWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFP 110 (185)
T ss_dssp ------------------TCSSEESSTTC-EE--CBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTSCCC
T ss_pred ------------------cCccccCCCCe-EE--EEecCCCCCCCcccCHHHHHHHHHHHHHHHcCCCccCCCCCCCCCC
Confidence 57777666654 22 4644321 11111111 56778995 489
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCcchHHHHHHHHHHHHHHhhcCCCC-CCccchHHH
Q psy9562 192 NLCRKILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLVNV-KELEPLREM 253 (267)
Q Consensus 192 ~~~~~i~rrLfRv~aHiY~hHf~~~~~l~~e~hlNt~fkHF~~F~~eF~Li~~-kel~Pl~~l 253 (267)
+.+.++++.|||+++|||+|.|.+ |.+.-.+++.- +|+....++|-++-. =+|-+=+|+
T Consensus 111 ~~f~~~~~~I~rRLfRVyaHiY~~--Hf~~~~~l~~e-~hlNt~f~hF~~F~~ef~Li~~kel 170 (185)
T 1pi1_A 111 KNFMSVAKTILKRLFRVYAHIYHQ--HFDSVMQLQEE-AHLNTSFKHFIFFVQEFNLIDRREL 170 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCSCGGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHcCCc-ceehhhHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999966 44455677765 899998888876643 345444444
No 4
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=7.1e-12 Score=113.01 Aligned_cols=154 Identities=20% Similarity=0.331 Sum_probs=111.0
Q ss_pred cchhhhcc--CCCCCCchhHHHhcHHHHHHHHHHHHhhhcccccCCCCCCCCCCCceeeeeccccccccCCCCCcccCCc
Q psy9562 45 INLRSVVQ--LPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGPRINLIYGTVSEFCTEESCPTMSGGP 122 (267)
Q Consensus 45 ~~l~~~V~--lP~G~D~neWiA~h~~dffneinll~~~vsefCT~~tCP~m~~~~~~~~~~~~~~e~Ct~~~~p~Msag~ 122 (267)
..+.+.++ |..|.|+.+-++.+.....|+| ++.+++ +|+ +++|+|||+++|+||++
T Consensus 47 ~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neW-lA~h~~-dFf-----------n~in~lyg~ise~CT~~--------- 104 (236)
T 2hjn_A 47 QDIKQIVEMTLGSEGVLNQAVKLPRGEDENEW-LAVHCV-DFY-----------NQINMLYGSITEFCSPQ--------- 104 (236)
T ss_dssp -CHHHHHHHHHHGGGC---CCSCCTTCCHHHH-HHHHHH-HHH-----------HHHHHHHHHHGGGCCTT---------
T ss_pred HHHHHHHHHHhcCCcCHHHHhcCcCCCchhhH-HHHHHH-HHH-----------HHHHHHHHHHHcccCcc---------
Confidence 35555444 5568899999999999999999 888888 884 68999999999999997
Q ss_pred chhhhhhhhhcccccceeeEeccCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCCCCC---------------CCCCCCC
Q psy9562 123 RYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQINDENLFPV---------------STDIPFP 187 (267)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~ylw~d~~~~k~p~~~~Ap~Yi~~l~~w~~~~l~De~iFPt---------------~~~~~FP 187 (267)
+||+|.+.++| .+ .|.++.-..+.--|- +++..||
T Consensus 105 ---------------------------tCP~MsAg~~~-~Y--lW~d~~~kkp~~~~A~~Yi~~lm~wi~~~l~de~iFP 154 (236)
T 2hjn_A 105 ---------------------------TCPRMIATNEY-EY--LWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFP 154 (236)
T ss_dssp ---------------------------TCSSCBSSTTE-EE--CBCSSTTSCCBCCCHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred ---------------------------cCCCCcCCCCe-eE--EeccCCCCCCeeeCHHHHHHHHHHHHHHhccCCccCC
Confidence 57777766644 22 465542112222221 5677899
Q ss_pred c----chHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCcchHHHHHHHHHHHHHHhhcCCC-CCCccchHHH
Q psy9562 188 K----TFVNLCR-KILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLVN-VKELEPLREM 253 (267)
Q Consensus 188 ~----~F~~~~~-~i~rrLfRv~aHiY~hHf~~~~~l~~e~hlNt~fkHF~~F~~eF~Li~-~kel~Pl~~l 253 (267)
. .|++.+. ++++.|||+++|||+|.|.+ |.+.-.+++.- +|+..+.++|-++- .=+|-+=+||
T Consensus 155 s~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~--Hf~~~~~l~~e-~hLNt~FkHF~~F~~ef~Li~~kel 223 (236)
T 2hjn_A 155 SKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH--HFNEILELNLQ-TVLNTSFRHFCLFAQEFELLRPADF 223 (236)
T ss_dssp SSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH--SHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcccc-hhhhhhHHHHHHHHHHhcCCCHHHh
Confidence 5 4899999 99999999999999999966 44455677765 89999999987653 3345544444
No 5
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=18.38 E-value=33 Score=23.87 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=16.0
Q ss_pred ccchhhhccCCCCCCchhHHHhcH
Q psy9562 44 GINLRSVVQLPEGEDMNDWIAVHV 67 (267)
Q Consensus 44 ~~~l~~~V~lP~G~D~neWiA~h~ 67 (267)
.+|..-+..||+|+|....-+.++
T Consensus 3 ~~~~~p~~~lP~~VD~eVF~~LP~ 26 (48)
T 2kwv_A 3 DTSDLPLQALPEGVDQEVFKQLPA 26 (48)
T ss_dssp ----CCTTSSCTTCCGGGTTTSCH
T ss_pred ccccCccccCCCCCCHHHHHHCcH
Confidence 345666789999999988766654
No 6
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=14.35 E-value=2.1e+02 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=17.8
Q ss_pred hcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q psy9562 171 QINDENLFPVSTDIPFPKTFVNLCRKILTRLFR 203 (267)
Q Consensus 171 ~l~De~iFPt~~~~~FP~~F~~~~~~i~rrLfR 203 (267)
.-.++-+||+..|.+... ..+.++++++.+
T Consensus 89 ~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~~ 118 (179)
T 1ae9_A 89 ILGGETIIASTRREPLSS---GTVSRYFMRARK 118 (179)
T ss_dssp HTCCSBSSCCTTSCCCCH---HHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCcCCh---hHHHHHHHHHHH
Confidence 345788999887765543 344444444443
No 7
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=12.64 E-value=1.4e+02 Score=24.83 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=23.9
Q ss_pred hhhHHHHHHhCcchHHHHHHHHHHH-HHHhhcCCCCCCccchHHHHHH
Q psy9562 210 IHHFDRIVSIGAEPHVNTCYKHFYY-FIREFDLVNVKELEPLREMTAQ 256 (267)
Q Consensus 210 ~hHf~~~~~l~~e~hlNt~fkHF~~-F~~eF~Li~~kel~Pl~~l~~~ 256 (267)
+||++++.....+.-+|..+..+.. .-.-+++++.++++-+.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~~~ld~~~i~~~~~~i~~ 53 (220)
T 3etn_A 6 IHHHHHHENLYFQGMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVE 53 (220)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5788888888888888888777775 4445688888777666665554
No 8
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=11.76 E-value=98 Score=28.38 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy9562 153 TALPAPQYIALLMDWIEGQINDENLFPVSTD 183 (267)
Q Consensus 153 ~~~~Ap~Yi~~l~~w~~~~l~De~iFPt~~~ 183 (267)
+--|||+-|+..+.-+...+-+...||+++.
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt 177 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT 177 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT
T ss_pred cCCCCHHHHHHHHhhhccccCCCCccccccC
Confidence 4568999999999999999999999999763
No 9
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=8.62 E-value=1.4e+02 Score=21.49 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=23.2
Q ss_pred CCCCCCcchhhhHHHHhhhccccchhhhccCCCC
Q psy9562 23 KFNPGTMRYSLHKQAQASLSSGINLRSVVQLPEG 56 (267)
Q Consensus 23 ~~~~~~~~~~l~~~~~a~l~~~~~l~~~V~lP~G 56 (267)
-++||..|..|.|+-.++|++ |+.+...+..|
T Consensus 7 hhepgdlrhdlnqqeratlss--nvqrffmighg 38 (69)
T 2i9f_A 7 HHEPGDLRHDLNQQERATLSS--NVQRFFMIGHG 38 (69)
T ss_dssp CCCCSSGGGGCCHHHHHHHHH--HHHHHHHTTCS
T ss_pred cCCCccccchhhHHHHHHHhh--hhhheeeeccc
Confidence 467899999999999999877 34444444443
No 10
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=6.98 E-value=6.1e+02 Score=20.12 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCCCCCCc-chHHHHHHHHH
Q psy9562 172 INDENLFPVSTDIPFPK-TFVNLCRKILT 199 (267)
Q Consensus 172 l~De~iFPt~~~~~FP~-~F~~~~~~i~r 199 (267)
-.+.-+||+..+.+... .+...++.+++
T Consensus 148 ~~~~~lF~~~~g~~~~~~~~~~~~~~~~~ 176 (244)
T 3nkh_A 148 LNRNFVFTNHKGNPMQTERFNKILREAAK 176 (244)
T ss_dssp CCCSBSSBCTTSSBCCHHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCCchhhHHHHHHHHHH
Confidence 46788999888765542 23334444433
Done!