RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9562
(267 letters)
>gnl|CDD|202711 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is an essential
Saccharomyces cerevisiae protein, identified from a
two-hybrid screen, that binds Mps1p, a protein kinase
essential for spindle pole body duplication and mitotic
checkpoint regulation. Mob1 contains no known structural
motifs; however MOB1 is a member of a conserved gene
family and shares sequence similarity with a
nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
in vivo and a substrate for the Mps1p kinase in vitro.
Conditional alleles of MOB1 cause a late nuclear
division arrest at restrictive temperature. This family
also includes phocein, a rat protein that by yeast two
hybrid interacts with striatin.
Length = 171
Score = 254 bits (651), Expect = 2e-86
Identities = 108/214 (50%), Positives = 139/214 (64%), Gaps = 43/214 (20%)
Query: 38 QASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGP 97
+A+L SG +L+++V+LPEGED+N+WIAVHVVDFFN INL+YGT+SEFCT ++CP MS GP
Sbjct: 1 EATLGSG-DLKTIVKLPEGEDLNEWIAVHVVDFFNEINLLYGTISEFCTPQTCPQMSAGP 59
Query: 98 RINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPA 157
+ YEYLWAD + KPT LPA
Sbjct: 60 Q----------------------------------------YEYLWAD--EKGKPTRLPA 77
Query: 158 PQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDRIV 217
PQYI L+DWIE Q+NDE +FP +PFPK F + +KIL RLFR+F H+Y HHFD IV
Sbjct: 78 PQYIDHLLDWIETQLNDEKIFPTKVGVPFPKNFKLIVKKILRRLFRIFAHIYFHHFDEIV 137
Query: 218 SIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLR 251
+ E H+NT +KHF F+REF+L++ KELEPL+
Sbjct: 138 ELELETHLNTRFKHFVSFVREFNLIDRKELEPLK 171
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 31.7 bits (72), Expect = 0.40
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 161 IALLMDWIEGQINDENLF--PVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDRI 216
+A + + NDEN+F P+S F T + C L +L VF FD I
Sbjct: 14 LAFYKHLADSKSNDENIFLSPLSISTAFAMTKLGACNNTLEQLMEVF------QFDTI 65
>gnl|CDD|233392 TIGR01391, dnaG, DNA primase, catalytic core. Members of this
family are DNA primase, a ubiquitous bacteria protein.
Most members of this family contain nearly two hundred
additional residues C-terminal to the region represented
here, but conservation between species is poor and the
C-terminal region was not included in the seed
alignment. This protein contains a CHC2 zinc finger
(pfam01807) and a Toprim domain (pfam01751) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 415
Score = 30.7 bits (70), Expect = 0.86
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 35 KQAQASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFF-----NRINLIY 78
+ + L GIN++ V++LP G+D ++++ V+ N +LI
Sbjct: 319 RAIELLLPLGINVK-VIKLPGGKDPDEYLRKEGVEALKKLLENSKSLIE 366
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 29.8 bits (67), Expect = 1.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 123 RYEYLWAKYHVNNC---------YWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQIN 173
R EY +A+ + +N +YE LW DG K +A P P+ +A D G
Sbjct: 150 RPEYEFAREYADNIADLLTPQSGAYYE-LWLDGEKVM--SAEPDPEVVAARNDNSHGTNF 206
Query: 174 DENLFPVSTDIPFPKTF 190
++ P+ P+ F
Sbjct: 207 ADSPEPLYGTQYLPRKF 223
>gnl|CDD|223435 COG0358, DnaG, DNA primase (bacterial type) [DNA replication,
recombination, and repair].
Length = 568
Score = 29.0 bits (65), Expect = 3.2
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 33 LHKQAQASLSSGINLRSVVQLPEGEDMNDWIAVHVVD-FFNRINLIYGTVSEF 84
+ Q L V+ LP+G+D ++ I + ++ + EF
Sbjct: 307 AKRALQLVLPLDFVGVFVILLPDGKDPDELIRKEGAEALRKKLPNERLPLIEF 359
>gnl|CDD|202250 pfam02474, NodA, Nodulation protein A (NodA). Rhizobia nodulation
(nod) genes control the biosynthesis of Nod factors
required for infection and nodulation of their legume
hosts. Nodulation protein A (NodA) is a
N-acetyltransferase involved in production of Nod
factors that stimulate mitosis in various plant
protoplasts.
Length = 196
Score = 27.6 bits (62), Expect = 5.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 25/71 (35%)
Query: 24 FNPGTMRYSLHK-------QAQASLSSGINLRS------------------VVQLPEGED 58
F GT+R++L K A++ SG+ +RS VV LP G
Sbjct: 120 FAFGTVRHALRKHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDVLVVVLPIGRP 179
Query: 59 MNDWIAVHVVD 69
M++W A ++D
Sbjct: 180 MSEWPAGTLID 190
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 26.9 bits (60), Expect = 7.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 145 DGAKYKKPTALPAPQYIALLMDWI 168
GA Y+ P + + AL + W+
Sbjct: 79 GGATYQVPVEVRPSRRYALAIRWL 102
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 27.5 bits (62), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 212 HFDRIVSIGAEPHV 225
FDRIVS+G HV
Sbjct: 228 QFDRIVSVGMFEHV 241
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 27.3 bits (61), Expect = 9.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
Query: 163 LLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFV-HVYIHHFDRIVSIGA 221
L M+WI+G +S DI K+ +++ L R F+ + F A
Sbjct: 243 LTMEWIDG-------IKIS-DIAALKSAGIDRKELAELLVRAFLRQLLRDGF-----FHA 289
Query: 222 EPH 224
+PH
Sbjct: 290 DPH 292
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,879,301
Number of extensions: 1293673
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1252
Number of HSP's successfully gapped: 19
Length of query: 267
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 172
Effective length of database: 6,723,972
Effective search space: 1156523184
Effective search space used: 1156523184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.2 bits)