RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9562
(267 letters)
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 236 bits (602), Expect = 2e-78
Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 42/257 (16%)
Query: 4 NLSGFVEFFQKGKTFRPKKKFNPGTMRYSLHKQAQASLSSGINLRSVVQLPEGEDMNDWI 63
N++ F K F + T + + + +L S L V+LP GED N+W+
Sbjct: 20 NVTDFNYTPSHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWL 79
Query: 64 AVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGPRINLIYGTVSEFCTEESCPTMSGGPR 123
AVH VDF+N+IN++YG+++EFC+ ++CP M
Sbjct: 80 AVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNE------------------------- 114
Query: 124 YEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQINDENLFPVSTD 183
YEYLWA K + P ++ AP+Y+ LM W + Q +DE+LFP
Sbjct: 115 ---------------YEYLWAFQ-KGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVT 158
Query: 184 IPFPKTFV-NLCRKILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREFDLV 242
FP+ F+ + + IL RLFRV+ H+Y HHF+ I+ + + +NT ++HF F +EF+L+
Sbjct: 159 GTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELL 218
Query: 243 NVKELEPLREMTAQICR 259
+ PL E+ ++
Sbjct: 219 RPADFGPLLELVMELRD 235
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Length = 185
Score = 224 bits (573), Expect = 9e-75
Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 41/222 (18%)
Query: 38 QASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGP 97
+A+L SG NLR V LPEGED+N+WIAV+ VDFFN+IN++YGT++EFCTE SCP MS GP
Sbjct: 2 EATLGSG-NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGP 60
Query: 98 RINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPA 157
YEY WADG KKP A
Sbjct: 61 ----------------------------------------RYEYHWADGTNIKKPIKCSA 80
Query: 158 PQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDRIV 217
P+YI LM W++ Q++DE LFP +PFPK F+++ + IL RLFRV+ H+Y HFD ++
Sbjct: 81 PKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVM 140
Query: 218 SIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQICR 259
+ E H+NT +KHF +F++EF+L++ +EL PL+E+ ++
Sbjct: 141 QLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGS 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.011
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 29/143 (20%)
Query: 103 YGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYE--------YL---WADGAKYKK 151
Y F +++ P Y ++ +H+ N E +L + + K +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRH 509
Query: 152 P-TALPAPQYIA-LLMDWI--EGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVH 207
TA A I L + I D + P + VN IL L ++ +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICD--------NDPKYERLVNA---ILDFLPKIEEN 558
Query: 208 VYIHHFDRIVSIGAEPHVNTCYK 230
+ + ++ I ++
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE 581
Score = 33.7 bits (76), Expect = 0.077
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 24/89 (26%)
Query: 122 PRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPAPQYIALLMDWIEGQINDENLFPVS 181
Y++L + + ++P ++ YI + + ND +F
Sbjct: 89 INYKFLMSPIK--------------TEQRQP-SMMTRMYI----EQRDRLYNDNQVFA-K 128
Query: 182 TDIPFPKTFVNLCRKILTRLFR---VFVH 207
++ + ++ L R+ L L V +
Sbjct: 129 YNVSRLQPYLKL-RQALLELRPAKNVLID 156
Score = 29.8 bits (66), Expect = 1.2
Identities = 21/155 (13%), Positives = 40/155 (25%), Gaps = 40/155 (25%)
Query: 112 EESCPTMSGGPRY-EYLWAKYHVNNCYWYEYLWADGAKYKKP-----TALPAPQYIALLM 165
E + PR + W + + K L +Y +
Sbjct: 320 REVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 166 DWIEGQINDENLFPVSTDIPFPKTFVNL--------CRKILTRLFRVFV--------HVY 209
+FP S IP + ++ +L + + +
Sbjct: 377 RLS--------VFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 210 IH--HFDRIVSIGAEP--HVNTCYKHFYYFIREFD 240
I + + V + E H + H Y + FD
Sbjct: 428 IPSIYLELKVKLENEYALH-RSIVDH-YNIPKTFD 460
Score = 26.7 bits (58), Expect = 9.6
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 207 HVYIHHFDRIVSIGAEPHVNTCYK----HFY-YFIREFDLVNVKELE 248
H + HH D G + YK F F+ FD +V+++
Sbjct: 1 HHHHHHMD--FETGEHQY---QYKDILSVFEDAFVDNFDCKDVQDMP 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.5
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 53/119 (44%)
Query: 5 LSGFVEFFQKGKT----------FRPKK-----KFNPGTMRY--SLHKQAQASLSSGINL 47
L G +K K F +K +F P + L A ++ +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 48 RSVV------QLP-----EGEDMN-------------------DWIAV------HVVDF 70
+V Q+P +G D+ W H++DF
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 27.9 bits (63), Expect = 3.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 212 HFDRIVSIGAEPHV 225
DRIVSIGA H
Sbjct: 129 PVDRIVSIGAFEHF 142
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 28.0 bits (63), Expect = 3.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 213 FDRIVSIGAEPHV 225
DRIVSI A H
Sbjct: 156 VDRIVSIEAFEHF 168
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
polyph protein-ligand complex, transferase; HET: DNA
ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
4edt_A* 4edv_A* 4ee1_A*
Length = 329
Score = 26.5 bits (59), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 41 LSSGINLRSVVQLPEGED 58
L G+N+ V+QLP G D
Sbjct: 220 LQQGLNVF-VIQLPSGMD 236
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.4 bits (59), Expect = 9.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 213 FDRIVSIGA 221
DRIVS+GA
Sbjct: 138 VDRIVSLGA 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,362,497
Number of extensions: 258451
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 16
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.2 bits)