RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9562
         (267 letters)



>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score =  255 bits (653), Expect = 3e-87
 Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 41/223 (18%)

Query: 38  QASLSSGINLRSVVQLPEGEDMNDWIAVHVVDFFNRINLIYGTVSEFCTEESCPTMSGGP 97
           +A+L SG NLR  V LPEGED+N+WIAV+ VDFFN+IN++YGT++EFCTE SCP MS GP
Sbjct: 2   EATLGSG-NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGP 60

Query: 98  RINLIYGTVSEFCTEESCPTMSGGPRYEYLWAKYHVNNCYWYEYLWADGAKYKKPTALPA 157
                                                    YEY WADG   KKP    A
Sbjct: 61  ----------------------------------------RYEYHWADGTNIKKPIKCSA 80

Query: 158 PQYIALLMDWIEGQINDENLFPVSTDIPFPKTFVNLCRKILTRLFRVFVHVYIHHFDRIV 217
           P+YI  LM W++ Q++DE LFP    +PFPK F+++ + IL RLFRV+ H+Y  HFD ++
Sbjct: 81  PKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVM 140

Query: 218 SIGAEPHVNTCYKHFYYFIREFDLVNVKELEPLREMTAQICRD 260
            +  E H+NT +KHF +F++EF+L++ +EL PL+E+  ++   
Sbjct: 141 QLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSK 183


>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein
          {Equine arteritis virus [TaxId: 11047]}
          Length = 56

 Score = 26.3 bits (57), Expect = 0.87
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 26 PGTMRYSLHKQAQASLSSGI 45
          PG +R+ L++Q +A+LSS +
Sbjct: 2  PGDLRHDLNQQERATLSSNV 21


>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 25.7 bits (56), Expect = 5.3
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 229 YKHFYYFIREFDLVNVKELEPLREMTAQICR 259
           ++H  Y ++  DL    + +  + M A + R
Sbjct: 70  HRHSAYILQNSDLPGFNQEQ--QLMMATLVR 98


>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 25.0 bits (54), Expect = 8.0
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 197 ILTRLFRVFVHVYIHHFDRIVSIGAEPHVNTCYKHFYYFIREF 239
           +LT   R+F    I +    + + AE       K      ++F
Sbjct: 32  LLTGDGRIFSGCNIENACYPLGVCAER--TAIQKAISEGYKDF 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,106,503
Number of extensions: 53446
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 8
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.4 bits)